AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0180003670.01

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0180003670.01.T01 MTR_1g068810 79.116 249 30 3 77 303 4 252 6.31e-132 375
MsG0180003670.01.T01 MTR_1g068810 79.032 248 30 3 78 303 1 248 1.89e-131 374
MsG0180003670.01.T01 MTR_1g068810 78.166 229 47 1 78 303 1 229 5.32e-126 359
MsG0180003670.01.T01 MTR_1g068810 71.119 277 30 4 77 303 4 280 1.20e-125 360
MsG0180003670.01.T01 MTR_1g068810 78.605 215 43 1 92 303 10 224 2.31e-119 342
MsG0180003670.01.T01 MTR_1g068810 78.605 215 43 1 92 303 2 216 2.37e-119 342
MsG0180003670.01.T01 MTR_1g068810 69.547 243 43 2 92 303 2 244 9.01e-113 326
MsG0180003670.01.T01 MTR_1g096640 94.737 152 8 0 139 290 51 202 7.13e-106 308
MsG0180003670.01.T01 MTR_1g068810 67.826 230 43 2 92 290 2 231 4.93e-103 301
MsG0180003670.01.T01 MTR_8g077180 83.636 165 27 0 139 303 62 226 3.06e-102 298
MsG0180003670.01.T01 MTR_8g024050 82.424 165 29 0 139 303 93 257 5.69e-102 299
MsG0180003670.01.T01 MTR_7g118340 82.530 166 29 0 138 303 54 219 1.74e-101 296
MsG0180003670.01.T01 MTR_5g020840 81.818 165 30 0 139 303 49 213 1.52e-100 294
MsG0180003670.01.T01 MTR_8g024050 85.484 124 18 0 139 262 48 171 4.73e-77 234
MsG0180003670.01.T01 MTR_1g112450 71.429 49 12 1 222 268 63 111 3.54e-17 78.2
MsG0180003670.01.T01 MTR_1g112430 89.286 28 3 0 223 250 39 66 1.78e-12 62.0
MsG0180003670.01.T01 MTR_2g010430 31.902 163 87 6 126 264 79 241 2.75e-12 66.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0180003670.01.T01 AT3G53620 87.879 165 20 0 139 303 52 216 1.39e-109 317
MsG0180003670.01.T01 AT1G01050 86.061 165 23 0 139 303 48 212 1.51e-105 306
MsG0180003670.01.T01 AT1G01050 86.061 165 23 0 139 303 48 212 1.51e-105 306
MsG0180003670.01.T01 AT2G46860 83.030 165 28 0 139 303 52 216 7.63e-103 300
MsG0180003670.01.T01 AT4G01480 81.818 165 30 0 139 303 52 216 3.07e-100 293
MsG0180003670.01.T01 AT4G01480 81.818 165 30 0 139 303 52 216 3.07e-100 293
MsG0180003670.01.T01 AT2G18230 78.788 165 35 0 139 303 54 218 4.03e-94 278
MsG0180003670.01.T01 AT5G09650 32.143 168 90 6 126 269 89 256 6.06e-13 68.6

Find 82 sgRNAs with CRISPR-Local

Find 210 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TGCTTAACTTTGTTAAATTT+TGG 0.082092 1:+66363959 MsG0180003670.01.T01:three_prime_UTR
CAAGAAAACTGGACTTATTA+AGG 0.226202 1:+66362464 MsG0180003670.01.T01:CDS
TTTGAACTTGTACATTCTTA+AGG 0.309589 1:+66362313 MsG0180003670.01.T01:CDS
TTGAAGATCCTGGGAGCTTC+AGG 0.313776 1:-66361599 None:intergenic
TTTCTTCGTGCCAAAGCTAT+TGG 0.320096 1:+66363298 MsG0180003670.01.T01:CDS
ACTGTTAATGTTCAGGCTAA+TGG 0.334959 1:+66360730 MsG0180003670.01.T01:intron
TATGAACTTGACAAGAAAAC+TGG 0.356052 1:+66362453 MsG0180003670.01.T01:CDS
CAACAGGAGCCAGTTCTTCC+TGG 0.361097 1:+66363271 MsG0180003670.01.T01:intron
TGCTTAAGTAGAGGTGGAAA+TGG 0.377784 1:-66360274 None:intergenic
GTTGTGTATCCTCACAACTA+TGG 0.379576 1:+66362591 MsG0180003670.01.T01:CDS
AGGAATGAAATGAAATGAAA+TGG 0.388985 1:-66360341 None:intergenic
ATAATAACCAAGACATCAAT+GGG 0.410303 1:-66362648 None:intergenic
CATAATAACCAAGACATCAA+TGG 0.424808 1:-66362649 None:intergenic
TGATGTCTTGGTTATTATGC+AGG 0.426309 1:+66362653 MsG0180003670.01.T01:CDS
AGAAAGCAGCCAGGAAGAAC+TGG 0.439777 1:-66363280 None:intergenic
GACAAATGTACATGCTATAT+AGG 0.444522 1:-66363898 None:intergenic
GGAGAGAGAATACGGAAGTA+AGG 0.446608 1:-66360376 None:intergenic
GGCGGTAGTATTGATGCATA+TGG 0.450578 1:+66363785 MsG0180003670.01.T01:exon
GCTTACACAATTGAAGATCC+TGG 0.455092 1:-66361609 None:intergenic
CAGGCTAATGGCTTCTGAAT+CGG 0.459794 1:+66360742 MsG0180003670.01.T01:intron
TCAGATACCTGATCAATCAT+AGG 0.466855 1:-66363328 None:intergenic
ACTACGTTGTGGAGAGTTTG+AGG 0.477682 1:+66363764 MsG0180003670.01.T01:CDS
ACGATTTCAGAAACTGCAAT+TGG 0.481587 1:-66360889 None:intergenic
CACAACGTAGTCTGCATACA+AGG 0.481707 1:-66363752 None:intergenic
TCTCATGCCTATGATTGATC+AGG 0.492132 1:+66363321 MsG0180003670.01.T01:CDS
GCTTAAGTAGAGGTGGAAAT+GGG 0.493203 1:-66360273 None:intergenic
TTGTGTATCCTCACAACTAT+GGG 0.498500 1:+66362592 MsG0180003670.01.T01:CDS
AGGCATGAGACCAATAGCTT+TGG 0.503559 1:-66363308 None:intergenic
ACCATCCTCACAAATAGTGC+GGG 0.507168 1:-66362622 None:intergenic
AATATGCATGTGTTGTCAGC+TGG 0.509898 1:-66363923 None:intergenic
CCCCGCACTATTTGTGAGGA+TGG 0.512555 1:+66362621 MsG0180003670.01.T01:CDS
TGCTATATAGGATAGGATTA+CGG 0.512938 1:-66363886 None:intergenic
AGAATGTACAAGTTCAAAAG+AGG 0.522733 1:-66362308 None:intergenic
TAGGCATTACAATGATATCA+AGG 0.527302 1:+66363477 MsG0180003670.01.T01:CDS
AGAGGATGCTTAAGTAGAGG+TGG 0.527341 1:-66360280 None:intergenic
TAGGTGGTTGAAATTGGGAA+AGG 0.533306 1:+66362417 MsG0180003670.01.T01:intron
TGGTGACCCCATTGATGTCT+TGG 0.533354 1:+66362641 MsG0180003670.01.T01:CDS
GATTGTTTCGAATCACAACT+TGG 0.536487 1:+66362279 MsG0180003670.01.T01:CDS
GAATGAAGAGAAGGATGAAG+AGG 0.539841 1:-66360417 None:intergenic
AAGTAAGGAAAACGTGAAGA+AGG 0.543930 1:-66360361 None:intergenic
GGAATGCTCAATAGCTTCAA+AGG 0.545999 1:-66363605 None:intergenic
CTCAATACTATGTGAATGGA+AGG 0.552644 1:+66360121 None:intergenic
GTTTCGAATCACAACTTGGA+CGG 0.556463 1:+66362283 MsG0180003670.01.T01:CDS
ATTTCAGAAACTGCAATTGG+TGG 0.561215 1:-66360886 None:intergenic
AGTATGCAATGGAAGGAAAG+AGG 0.563215 1:-66360298 None:intergenic
GAAAGAGGATGCTTAAGTAG+AGG 0.564319 1:-66360283 None:intergenic
ATGTAGGTCCTGAAGCTCCC+AGG 0.568121 1:+66361591 MsG0180003670.01.T01:intron
GATACACAACTGATGAGTAA+AGG 0.570339 1:-66362578 None:intergenic
AAGAGGAAGCACAGATCTCG+AGG 0.574256 1:-66360400 None:intergenic
CAAAGGCAGATGAGGAAGGA+AGG 0.576115 1:-66363588 None:intergenic
CTTGTTGAGTATGCAATGGA+AGG 0.577541 1:-66360305 None:intergenic
GAACTTGTACATTCTTAAGG+TGG 0.580381 1:+66362316 MsG0180003670.01.T01:CDS
CTTACACAATTGAAGATCCT+GGG 0.582044 1:-66361608 None:intergenic
GTGCTGATGATCCTGAGTAT+AGG 0.582724 1:+66363458 MsG0180003670.01.T01:CDS
CGACAGTGAGAATGAAGAGA+AGG 0.587064 1:-66360426 None:intergenic
GCGGTAGTATTGATGCATAT+GGG 0.588298 1:+66363786 MsG0180003670.01.T01:exon
TGAAATGAAATGAAATGGAA+TGG 0.592668 1:-66360336 None:intergenic
ATGTACATGCTATATAGGAT+AGG 0.592686 1:-66363893 None:intergenic
AATAGCTTCAAAGGCAGATG+AGG 0.596063 1:-66363596 None:intergenic
TGAAATTGGGAAAGGAAACA+AGG 0.596735 1:+66362425 MsG0180003670.01.T01:CDS
ATATGCATGTGTTGTCAGCT+GGG 0.599753 1:-66363922 None:intergenic
GCTTCAAAGGCAGATGAGGA+AGG 0.607869 1:-66363592 None:intergenic
CACCATCCTCACAAATAGTG+CGG 0.608255 1:-66362623 None:intergenic
ATTTCAGCTAAACGATGTGG+AGG 0.614529 1:-66363505 None:intergenic
TTGGCACGAAGAAAGCAGCC+AGG 0.615889 1:-66363289 None:intergenic
TCATTGTAATGCCTATACTC+AGG 0.624794 1:-66363469 None:intergenic
GAGGAAGCACAGATCTCGAG+GGG 0.635851 1:-66360398 None:intergenic
TTACAAGAAGAATGAGAACA+AGG 0.636721 1:+66363546 MsG0180003670.01.T01:CDS
AGAGGAAGCACAGATCTCGA+GGG 0.647447 1:-66360399 None:intergenic
CCATCCTCACAAATAGTGCG+GGG 0.650576 1:-66362621 None:intergenic
CGGATTTCAGCTAAACGATG+TGG 0.654970 1:-66363508 None:intergenic
GAAATGGGAAAATGTGAGTG+AGG 0.668719 1:-66360258 None:intergenic
GGGATAAACCCATAGTTGTG+AGG 0.674435 1:-66362600 None:intergenic
CAACTGATGAGTAAAGGACC+CGG 0.675914 1:-66362572 None:intergenic
TTTCAGCTAAACGATGTGGA+GGG 0.687080 1:-66363504 None:intergenic
CATCCTCACAAATAGTGCGG+GGG 0.690869 1:-66362620 None:intergenic
TGAATCGGAAACTGTCACTG+TGG 0.703517 1:+66360757 MsG0180003670.01.T01:CDS
TTTGCTTGTTGAGTATGCAA+TGG 0.710582 1:-66360309 None:intergenic
AGGAAGCACAGATCTCGAGG+GGG 0.719181 1:-66360397 None:intergenic
CTTGTATGCAGACTACGTTG+TGG 0.725981 1:+66363753 MsG0180003670.01.T01:CDS
ACGTTGTGGAGAGTTTGAGG+CGG 0.743485 1:+66363767 MsG0180003670.01.T01:CDS
TAATAACCAAGACATCAATG+GGG 0.783648 1:-66362647 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ACATAATTTTAATGATATTT+TGG - Chr1:66361261-66361280 None:intergenic 10.0%
!!! ATTAGTTTAATCTTAAAAAA+TGG + Chr1:66361058-66361077 MsG0180003670.01.T01:intron 10.0%
!! AATCTAATCTAACATTTATT+AGG - Chr1:66361026-66361045 None:intergenic 15.0%
!! TAATCATCATAAAAGATATT+TGG - Chr1:66361909-66361928 None:intergenic 15.0%
!!! TATGATGATTATTTTTTCTA+TGG + Chr1:66361918-66361937 MsG0180003670.01.T01:intron 15.0%
!!! TTATAATGATTTTTTGAAGA+AGG + Chr1:66361306-66361325 MsG0180003670.01.T01:intron 15.0%
!!! TTGAAATATTGATGAATTTT+AGG + Chr1:66362398-66362417 MsG0180003670.01.T01:intron 15.0%
!!! TTTTATTTTTATTGTTGTGA+AGG + Chr1:66363728-66363747 MsG0180003670.01.T01:intron 15.0%
!! ACTAATTCTTATGAAATTCA+GGG + Chr1:66363406-66363425 MsG0180003670.01.T01:intron 20.0%
!! TACAATTTCACAATAATACA+TGG + Chr1:66363146-66363165 MsG0180003670.01.T01:intron 20.0%
!! TAGGAAAAAAAAAAAAAACC+TGG - Chr1:66361007-66361026 None:intergenic 20.0%
!!! AAAAAGCTGAGATTTTTTTT+TGG - Chr1:66362245-66362264 None:intergenic 20.0%
!!! AAATATTGATGAATTTTAGG+TGG + Chr1:66362401-66362420 MsG0180003670.01.T01:intron 20.0%
!!! AATGAAATTTTCTCAAGTAT+TGG - Chr1:66360556-66360575 None:intergenic 20.0%
!!! AGCAGTTTTATTATAAGAAA+TGG + Chr1:66362068-66362087 MsG0180003670.01.T01:intron 20.0%
!!! ATGATTGTTTATTTTTTTCC+AGG + Chr1:66361342-66361361 MsG0180003670.01.T01:intron 20.0%
!!! ATTTTGTTTTGTGAGATTAA+GGG + Chr1:66360969-66360988 MsG0180003670.01.T01:intron 20.0%
!!! TGCTTAACTTTGTTAAATTT+TGG + Chr1:66363959-66363978 MsG0180003670.01.T01:three_prime_UTR 20.0%
!!! TTGTGAGTAAATTTTGAATA+TGG + Chr1:66363114-66363133 MsG0180003670.01.T01:intron 20.0%
! AATTGTAACTGTTAATGTTC+AGG + Chr1:66360723-66360742 MsG0180003670.01.T01:intron 25.0%
! AGAAAAACACTGAAATGAAA+CGG - Chr1:66360479-66360498 None:intergenic 25.0%
! AGGAATGAAATGAAATGAAA+TGG - Chr1:66360344-66360363 None:intergenic 25.0%
! ATAATAACCAAGACATCAAT+GGG - Chr1:66362651-66362670 None:intergenic 25.0%
! CACTAATTCTTATGAAATTC+AGG + Chr1:66363405-66363424 MsG0180003670.01.T01:intron 25.0%
! GTATAATAATACTCAACTTC+TGG + Chr1:66362894-66362913 MsG0180003670.01.T01:intron 25.0%
! TAAGCAATGTTGTTGAAAAA+CGG + Chr1:66361507-66361526 MsG0180003670.01.T01:intron 25.0%
! TCATTAGAGCATAATGTATT+TGG + Chr1:66361541-66361560 MsG0180003670.01.T01:intron 25.0%
! TCTGTTAAAACATAATTTCC+AGG + Chr1:66363670-66363689 MsG0180003670.01.T01:intron 25.0%
! TGAAATGAAATGAAATGGAA+TGG - Chr1:66360339-66360358 None:intergenic 25.0%
! TGCAATCTTGTTAATTCATT+TGG + Chr1:66360941-66360960 MsG0180003670.01.T01:intron 25.0%
! TTAGAGTAATAGAATTACTC+AGG + Chr1:66361670-66361689 MsG0180003670.01.T01:intron 25.0%
! TTTGAACTTGTACATTCTTA+AGG + Chr1:66362313-66362332 MsG0180003670.01.T01:CDS 25.0%
!! AATACATACATGTTTCCTTT+TGG - Chr1:66362837-66362856 None:intergenic 25.0%
!! ATTTTCCTTAAACAGAAAAG+TGG + Chr1:66360210-66360229 MsG0180003670.01.T01:intron 25.0%
!!! AATTTTAGGTGGTTGAAATT+GGG + Chr1:66362412-66362431 MsG0180003670.01.T01:intron 25.0%
!!! ACATTTTTTACTTTGTATGC+TGG + Chr1:66361732-66361751 MsG0180003670.01.T01:intron 25.0%
!!! ATGATTTTTTGAAGAAGGAT+CGG + Chr1:66361311-66361330 MsG0180003670.01.T01:intron 25.0%
!!! CATTTTGTTTTGTGAGATTA+AGG + Chr1:66360968-66360987 MsG0180003670.01.T01:intron 25.0%
!!! CTTTTGGAATTCAAAGAATA+CGG - Chr1:66362821-66362840 None:intergenic 25.0%
!!! TAGTGTTTTTTGAACAATGT+AGG + Chr1:66361575-66361594 MsG0180003670.01.T01:intron 25.0%
!!! TCTTTTCTTTGCTTTTGAAA+GGG + Chr1:66360850-66360869 MsG0180003670.01.T01:intron 25.0%
!!! TTCTTTTCTTTGCTTTTGAA+AGG + Chr1:66360849-66360868 MsG0180003670.01.T01:intron 25.0%
AAAAAAAATGAAGTTGCGTG+TGG - Chr1:66360523-66360542 None:intergenic 30.0%
AGAATGTACAAGTTCAAAAG+AGG - Chr1:66362311-66362330 None:intergenic 30.0%
AGATCCATCATTATCATGTT+TGG - Chr1:66361284-66361303 None:intergenic 30.0%
ATAACATGGAGTTTGCAAAA+CGG - Chr1:66360613-66360632 None:intergenic 30.0%
ATAGCTCAGAAGTAAAGATA+AGG - Chr1:66363045-66363064 None:intergenic 30.0%
ATGTACATGCTATATAGGAT+AGG - Chr1:66363896-66363915 None:intergenic 30.0%
CAAGAAAACTGGACTTATTA+AGG + Chr1:66362464-66362483 MsG0180003670.01.T01:CDS 30.0%
CATAATAACCAAGACATCAA+TGG - Chr1:66362652-66362671 None:intergenic 30.0%
CGTATTCTTTGAATTCCAAA+AGG + Chr1:66362819-66362838 MsG0180003670.01.T01:intron 30.0%
GAAAAACATACTCAAATGCA+TGG - Chr1:66361234-66361253 None:intergenic 30.0%
GACAAATGTACATGCTATAT+AGG - Chr1:66363901-66363920 None:intergenic 30.0%
GGAATATATCCTATATCCTA+TGG - Chr1:66360166-66360185 None:intergenic 30.0%
GGATTCTGTTATTAGTTATG+TGG + Chr1:66362791-66362810 MsG0180003670.01.T01:intron 30.0%
TAATAACCAAGACATCAATG+GGG - Chr1:66362650-66362669 None:intergenic 30.0%
TAATTGTGATAGAGAGAACA+TGG + Chr1:66361783-66361802 MsG0180003670.01.T01:intron 30.0%
TAGGCATTACAATGATATCA+AGG + Chr1:66363477-66363496 MsG0180003670.01.T01:CDS 30.0%
TATGAACTTGACAAGAAAAC+TGG + Chr1:66362453-66362472 MsG0180003670.01.T01:CDS 30.0%
TATGTTGTGATCTTCATTGA+GGG + Chr1:66362353-66362372 MsG0180003670.01.T01:intron 30.0%
TCAGTAACTCAACAATAACA+TGG - Chr1:66360627-66360646 None:intergenic 30.0%
TCCATGTAAGTAACAATGAT+GGG + Chr1:66363625-66363644 MsG0180003670.01.T01:intron 30.0%
TGATTTCAAATGCAAGAAGT+TGG + Chr1:66362924-66362943 MsG0180003670.01.T01:intron 30.0%
TGCAATTCTGTTCTCAAATT+TGG + Chr1:66362770-66362789 MsG0180003670.01.T01:intron 30.0%
TGCTATATAGGATAGGATTA+CGG - Chr1:66363889-66363908 None:intergenic 30.0%
TGGACTTATTAAGGTGATTA+TGG + Chr1:66362473-66362492 MsG0180003670.01.T01:intron 30.0%
TGTAATCTTCAAAAAAGCGA+CGG - Chr1:66363531-66363550 None:intergenic 30.0%
TTACAAGAAGAATGAGAACA+AGG + Chr1:66363546-66363565 MsG0180003670.01.T01:CDS 30.0%
TTATGTTGTGATCTTCATTG+AGG + Chr1:66362352-66362371 MsG0180003670.01.T01:intron 30.0%
TTCCATGTAAGTAACAATGA+TGG + Chr1:66363624-66363643 MsG0180003670.01.T01:intron 30.0%
! ATGTCCAAACATGATAATGA+TGG + Chr1:66361277-66361296 MsG0180003670.01.T01:intron 30.0%
! ATTAAGTCTGATTTGTGTTC+AGG - Chr1:66362145-66362164 None:intergenic 30.0%
!! CAACGAAAAGTTAATTTGCA+AGG - Chr1:66362707-66362726 None:intergenic 30.0%
!! GAAAATTGGTTTGATTCCAT+AGG + Chr1:66360147-66360166 MsG0180003670.01.T01:intron 30.0%
!! GAATTTTAGGTGGTTGAAAT+TGG + Chr1:66362411-66362430 MsG0180003670.01.T01:intron 30.0%
!!! ATTCTTTTTTGTGCTACAAC+AGG + Chr1:66363255-66363274 MsG0180003670.01.T01:intron 30.0%
!!! TTTTTTTTTTAGCCGACTCA+AGG + Chr1:66363075-66363094 MsG0180003670.01.T01:intron 30.0%
AAGAGAAGTTATTGCCATCT+AGG - Chr1:66363366-66363385 None:intergenic 35.0%
AAGTAAGGAAAACGTGAAGA+AGG - Chr1:66360364-66360383 None:intergenic 35.0%
AAGTTATTGCCATCTAGGAA+AGG - Chr1:66363361-66363380 None:intergenic 35.0%
AATGGCAACAAGTACAACAA+TGG - Chr1:66362517-66362536 None:intergenic 35.0%
ACGATTTCAGAAACTGCAAT+TGG - Chr1:66360892-66360911 None:intergenic 35.0%
ACTACGTGAATCATCAACTA+AGG - Chr1:66361977-66361996 None:intergenic 35.0%
ACTGTTAATGTTCAGGCTAA+TGG + Chr1:66360730-66360749 MsG0180003670.01.T01:intron 35.0%
AGATAAGGCTCAATATGTCA+AGG - Chr1:66363030-66363049 None:intergenic 35.0%
AGTTATTGCCATCTAGGAAA+GGG - Chr1:66363360-66363379 None:intergenic 35.0%
ATTTCAGAAACTGCAATTGG+TGG - Chr1:66360889-66360908 None:intergenic 35.0%
CAAGAAACACCAAAGTAAAC+AGG + Chr1:66361950-66361969 MsG0180003670.01.T01:intron 35.0%
CTACGTGAATCATCAACTAA+GGG - Chr1:66361976-66361995 None:intergenic 35.0%
CTGCTTAACTAGATAAAGCA+AGG - Chr1:66362053-66362072 None:intergenic 35.0%
CTTACACAATTGAAGATCCT+GGG - Chr1:66361611-66361630 None:intergenic 35.0%
GAACTTGTACATTCTTAAGG+TGG + Chr1:66362316-66362335 MsG0180003670.01.T01:CDS 35.0%
GAGTATGAAAACTGAAATCC+TGG - Chr1:66363691-66363710 None:intergenic 35.0%
GATACACAACTGATGAGTAA+AGG - Chr1:66362581-66362600 None:intergenic 35.0%
GATTGTTTCGAATCACAACT+TGG + Chr1:66362279-66362298 MsG0180003670.01.T01:CDS 35.0%
GCTGGAATGAAATTTCGTAA+TGG + Chr1:66361750-66361769 MsG0180003670.01.T01:intron 35.0%
GGTTTGATTCCATAGGATAT+AGG + Chr1:66360154-66360173 MsG0180003670.01.T01:intron 35.0%
TATATTGCTGACCTGTTGAA+TGG + Chr1:66362098-66362117 MsG0180003670.01.T01:intron 35.0%
TCAGATACCTGATCAATCAT+AGG - Chr1:66363331-66363350 None:intergenic 35.0%
TCATTGTAATGCCTATACTC+AGG - Chr1:66363472-66363491 None:intergenic 35.0%
TGAAAGGATCTCTCATTAAG+AGG - Chr1:66361434-66361453 None:intergenic 35.0%
TGAAATTGGGAAAGGAAACA+AGG + Chr1:66362425-66362444 MsG0180003670.01.T01:CDS 35.0%
TGATGTCTTGGTTATTATGC+AGG + Chr1:66362653-66362672 MsG0180003670.01.T01:CDS 35.0%
TTGTGTATCCTCACAACTAT+GGG + Chr1:66362592-66362611 MsG0180003670.01.T01:CDS 35.0%
TTTCAAATGCAAGAAGTTGG+TGG + Chr1:66362927-66362946 MsG0180003670.01.T01:intron 35.0%
! AATTTGTTTGGGGTCTCAAT+TGG - Chr1:66361385-66361404 None:intergenic 35.0%
! ACCAATTTTCTTACCTTCCA+TGG - Chr1:66360137-66360156 None:intergenic 35.0%
! ACCCATCATTGTTACTTACA+TGG - Chr1:66363629-66363648 None:intergenic 35.0%
! AGATCCTTTCATCATTGACT+AGG + Chr1:66361443-66361462 MsG0180003670.01.T01:intron 35.0%
! CTAAGCATGCTTTTATGTGT+AGG + Chr1:66362545-66362564 MsG0180003670.01.T01:intron 35.0%
! CTACACATAAAAGCATGCTT+AGG - Chr1:66362547-66362566 None:intergenic 35.0%
! GATGCATATGGGATTTTGTT+TGG + Chr1:66363797-66363816 MsG0180003670.01.T01:three_prime_UTR 35.0%
! TTTGCTTGTTGAGTATGCAA+TGG - Chr1:66360312-66360331 None:intergenic 35.0%
!! ACATTTTGATCACCTTGAGT+CGG - Chr1:66363090-66363109 None:intergenic 35.0%
!!! TTTTTTCCAGGCTGAAGAAA+TGG + Chr1:66361354-66361373 MsG0180003670.01.T01:intron 35.0%
AACGGTGCGTAAAAGAGAAA+AGG - Chr1:66360461-66360480 None:intergenic 40.0%
AACTAAGGGCCTGTTTACTT+TGG - Chr1:66361962-66361981 None:intergenic 40.0%
AAGGATCTCTCATTAAGAGG+TGG - Chr1:66361431-66361450 None:intergenic 40.0%
AATAGCTTCAAAGGCAGATG+AGG - Chr1:66363599-66363618 None:intergenic 40.0%
AATATGCATGTGTTGTCAGC+TGG - Chr1:66363926-66363945 None:intergenic 40.0%
AATGAAGTTGCGTGTGGTTA+CGG - Chr1:66360517-66360536 None:intergenic 40.0%
ACCTCCTAGTCAATGATGAA+AGG - Chr1:66361450-66361469 None:intergenic 40.0%
ACGGTGCGTAAAAGAGAAAA+GGG - Chr1:66360460-66360479 None:intergenic 40.0%
AGTAATGCTTGTGCGCTATA+GGG + Chr1:66362169-66362188 MsG0180003670.01.T01:intron 40.0%
AGTATGCAATGGAAGGAAAG+AGG - Chr1:66360301-66360320 None:intergenic 40.0%
ATATGCATGTGTTGTCAGCT+GGG - Chr1:66363925-66363944 None:intergenic 40.0%
ATTTCAGCTAAACGATGTGG+AGG - Chr1:66363508-66363527 None:intergenic 40.0%
CAACAGGTCAGCAATATAAC+AGG - Chr1:66362096-66362115 None:intergenic 40.0%
CTATCTCAAGATCATGCCAT+GGG - Chr1:66361486-66361505 None:intergenic 40.0%
CTTCAATTGTGTAAGCATGC+TGG + Chr1:66361616-66361635 MsG0180003670.01.T01:intron 40.0%
CTTCTCTTCATTCTCACTGT+CGG + Chr1:66360427-66360446 MsG0180003670.01.T01:intron 40.0%
CTTGTTGAGTATGCAATGGA+AGG - Chr1:66360308-66360327 None:intergenic 40.0%
GAAACATTCCCTTTCCTAGA+TGG + Chr1:66363349-66363368 MsG0180003670.01.T01:intron 40.0%
GAAAGAGGATGCTTAAGTAG+AGG - Chr1:66360286-66360305 None:intergenic 40.0%
GAAATGGGAAAATGTGAGTG+AGG - Chr1:66360261-66360280 None:intergenic 40.0%
GAATGAAGAGAAGGATGAAG+AGG - Chr1:66360420-66360439 None:intergenic 40.0%
GCTTAAGTAGAGGTGGAAAT+GGG - Chr1:66360276-66360295 None:intergenic 40.0%
GCTTACACAATTGAAGATCC+TGG - Chr1:66361612-66361631 None:intergenic 40.0%
GGAATGCTCAATAGCTTCAA+AGG - Chr1:66363608-66363627 None:intergenic 40.0%
GGTTAAGCGTTAAGCATGTT+GGG + Chr1:66362190-66362209 MsG0180003670.01.T01:intron 40.0%
GTTGTGTATCCTCACAACTA+TGG + Chr1:66362591-66362610 MsG0180003670.01.T01:CDS 40.0%
GTTTCGAATCACAACTTGGA+CGG + Chr1:66362283-66362302 MsG0180003670.01.T01:CDS 40.0%
TAGGTGGTTGAAATTGGGAA+AGG + Chr1:66362417-66362436 MsG0180003670.01.T01:intron 40.0%
TAGTAATGCTTGTGCGCTAT+AGG + Chr1:66362168-66362187 MsG0180003670.01.T01:intron 40.0%
TCTCATGCCTATGATTGATC+AGG + Chr1:66363321-66363340 MsG0180003670.01.T01:CDS 40.0%
TGCTTAAGTAGAGGTGGAAA+TGG - Chr1:66360277-66360296 None:intergenic 40.0%
TTTCAGCTAAACGATGTGGA+GGG - Chr1:66363507-66363526 None:intergenic 40.0%
TTTCTTCGTGCCAAAGCTAT+TGG + Chr1:66363298-66363317 MsG0180003670.01.T01:CDS 40.0%
! CTTGCATTTGAAATCACAGC+TGG - Chr1:66362920-66362939 None:intergenic 40.0%
! TCCTTTCATCATTGACTAGG+AGG + Chr1:66361446-66361465 MsG0180003670.01.T01:intron 40.0%
!! CGCTTCCACTTTTCTGTTTA+AGG - Chr1:66360218-66360237 None:intergenic 40.0%
!! CTTTTATGTGTAGGTTGACC+GGG + Chr1:66362554-66362573 MsG0180003670.01.T01:intron 40.0%
!! GCGGTAGTATTGATGCATAT+GGG + Chr1:66363786-66363805 MsG0180003670.01.T01:exon 40.0%
!! GCTTTTATGTGTAGGTTGAC+CGG + Chr1:66362553-66362572 MsG0180003670.01.T01:intron 40.0%
!!! CTTTTGAAAGGGTGTTTCTG+AGG + Chr1:66360861-66360880 MsG0180003670.01.T01:intron 40.0%
ACCATCCTCACAAATAGTGC+GGG - Chr1:66362625-66362644 None:intergenic 45.0%
ACTACGTTGTGGAGAGTTTG+AGG + Chr1:66363764-66363783 MsG0180003670.01.T01:CDS 45.0%
AGAGGATGCTTAAGTAGAGG+TGG - Chr1:66360283-66360302 None:intergenic 45.0%
AGGCATGAGACCAATAGCTT+TGG - Chr1:66363311-66363330 None:intergenic 45.0%
CAACTGATGAGTAAAGGACC+CGG - Chr1:66362575-66362594 None:intergenic 45.0%
CACAACGTAGTCTGCATACA+AGG - Chr1:66363755-66363774 None:intergenic 45.0%
CACCATCCTCACAAATAGTG+CGG - Chr1:66362626-66362645 None:intergenic 45.0%
CAGGCTAATGGCTTCTGAAT+CGG + Chr1:66360742-66360761 MsG0180003670.01.T01:intron 45.0%
CCATGGCATGATCTTGAGAT+AGG + Chr1:66361484-66361503 MsG0180003670.01.T01:intron 45.0%
CCTATCTCAAGATCATGCCA+TGG - Chr1:66361487-66361506 None:intergenic 45.0%
CGACAGTGAGAATGAAGAGA+AGG - Chr1:66360429-66360448 None:intergenic 45.0%
CGGATTTCAGCTAAACGATG+TGG - Chr1:66363511-66363530 None:intergenic 45.0%
CTTGTATGCAGACTACGTTG+TGG + Chr1:66363753-66363772 MsG0180003670.01.T01:CDS 45.0%
GATCTCTCATTAAGAGGTGG+TGG - Chr1:66361428-66361447 None:intergenic 45.0%
GCATGCTTAGGAACAGCAAA+TGG - Chr1:66362535-66362554 None:intergenic 45.0%
GGAGAGAGAATACGGAAGTA+AGG - Chr1:66360379-66360398 None:intergenic 45.0%
GGGATAAACCCATAGTTGTG+AGG - Chr1:66362603-66362622 None:intergenic 45.0%
GGGTTAAGCGTTAAGCATGT+TGG + Chr1:66362189-66362208 MsG0180003670.01.T01:intron 45.0%
TAAGGGTAAAAAGCAGCACC+AGG + Chr1:66360986-66361005 MsG0180003670.01.T01:intron 45.0%
TCAACACGCATCCATTCAAC+AGG - Chr1:66362112-66362131 None:intergenic 45.0%
TGAATCGGAAACTGTCACTG+TGG + Chr1:66360757-66360776 MsG0180003670.01.T01:CDS 45.0%
! ATTCGCGGTGGGAATTTGTT+TGG - Chr1:66361397-66361416 None:intergenic 45.0%
! GTGCTGATGATCCTGAGTAT+AGG + Chr1:66363458-66363477 MsG0180003670.01.T01:CDS 45.0%
! TCTCATTAAGAGGTGGTGGT+GGG - Chr1:66361424-66361443 None:intergenic 45.0%
! TTCGCGGTGGGAATTTGTTT+GGG - Chr1:66361396-66361415 None:intergenic 45.0%
! TTGTTTGGGGTCTCAATTGG+TGG - Chr1:66361382-66361401 None:intergenic 45.0%
!! GGCGGTAGTATTGATGCATA+TGG + Chr1:66363785-66363804 MsG0180003670.01.T01:exon 45.0%
!!! TTATTAGTATTTAATTTAAT+TGG - Chr1:66360187-66360206 None:intergenic 5.0%
ACGTTGTGGAGAGTTTGAGG+CGG + Chr1:66363767-66363786 MsG0180003670.01.T01:CDS 50.0%
AGAAAGCAGCCAGGAAGAAC+TGG - Chr1:66363283-66363302 None:intergenic 50.0%
CAAAGGCAGATGAGGAAGGA+AGG - Chr1:66363591-66363610 None:intergenic 50.0%
CATCCTCACAAATAGTGCGG+GGG - Chr1:66362623-66362642 None:intergenic 50.0%
CCATCCTCACAAATAGTGCG+GGG - Chr1:66362624-66362643 None:intergenic 50.0%
GCTTCAAAGGCAGATGAGGA+AGG - Chr1:66363595-66363614 None:intergenic 50.0%
TATCCCCCGCACTATTTGTG+AGG + Chr1:66362617-66362636 MsG0180003670.01.T01:CDS 50.0%
TCGGAAACTGTCACTGTGGT+TGG + Chr1:66360761-66360780 MsG0180003670.01.T01:intron 50.0%
TGGTGACCCCATTGATGTCT+TGG + Chr1:66362641-66362660 MsG0180003670.01.T01:CDS 50.0%
TTGAAGATCCTGGGAGCTTC+AGG - Chr1:66361602-66361621 None:intergenic 50.0%
! AAGAGGAAGCACAGATCTCG+AGG - Chr1:66360403-66360422 None:intergenic 50.0%
! AGAGGAAGCACAGATCTCGA+GGG - Chr1:66360402-66360421 None:intergenic 50.0%
! CTCTCATTAAGAGGTGGTGG+TGG - Chr1:66361425-66361444 None:intergenic 50.0%
! TCGCGGTGGGAATTTGTTTG+GGG - Chr1:66361395-66361414 None:intergenic 50.0%
!! GTGGTTACGGAGCATTGAGA+CGG - Chr1:66360504-66360523 None:intergenic 50.0%
ATGTAGGTCCTGAAGCTCCC+AGG + Chr1:66361591-66361610 MsG0180003670.01.T01:intron 55.0%
CAACAGGAGCCAGTTCTTCC+TGG + Chr1:66363271-66363290 MsG0180003670.01.T01:intron 55.0%
CCCCGCACTATTTGTGAGGA+TGG + Chr1:66362621-66362640 MsG0180003670.01.T01:CDS 55.0%
CTCGAGGGGGAGAGAGAATA+CGG - Chr1:66360387-66360406 None:intergenic 55.0%
GTGGAGCCATTTCTTCAGCC+TGG - Chr1:66361363-66361382 None:intergenic 55.0%
TTGGCACGAAGAAAGCAGCC+AGG - Chr1:66363292-66363311 None:intergenic 55.0%
! AGGAAGCACAGATCTCGAGG+GGG - Chr1:66360400-66360419 None:intergenic 55.0%
! GAGGAAGCACAGATCTCGAG+GGG - Chr1:66360401-66360420 None:intergenic 55.0%
! TGGTGGGTGTAATTCGCGGT+GGG - Chr1:66361408-66361427 None:intergenic 55.0%
!! GTGGTGGTGGGTGTAATTCG+CGG - Chr1:66361412-66361431 None:intergenic 55.0%
GGTCTGTTGCTGCACACCCA+TGG + Chr1:66361467-66361486 MsG0180003670.01.T01:intron 60.0%
!! GTGGTGGGTGTAATTCGCGG+TGG - Chr1:66361409-66361428 None:intergenic 60.0%
Chromosome Type Strat End Strand Name
Chr1 gene 66360136 66364049 66360136 ID=MsG0180003670.01;Name=MsG0180003670.01
Chr1 mRNA 66360136 66364049 66360136 ID=MsG0180003670.01.T01;Parent=MsG0180003670.01;Name=MsG0180003670.01.T01;_AED=0.35;_eAED=0.48;_QI=0|0.5|0.72|0.90|0.5|0.63|11|257|303
Chr1 exon 66363750 66364049 66363750 ID=MsG0180003670.01.T01:exon:3684;Parent=MsG0180003670.01.T01
Chr1 exon 66363427 66363629 66363427 ID=MsG0180003670.01.T01:exon:3683;Parent=MsG0180003670.01.T01
Chr1 exon 66363277 66363342 66363277 ID=MsG0180003670.01.T01:exon:3682;Parent=MsG0180003670.01.T01
Chr1 exon 66362567 66362674 66362567 ID=MsG0180003670.01.T01:exon:3681;Parent=MsG0180003670.01.T01
Chr1 exon 66362420 66362485 66362420 ID=MsG0180003670.01.T01:exon:3680;Parent=MsG0180003670.01.T01
Chr1 exon 66362259 66362337 66362259 ID=MsG0180003670.01.T01:exon:3679;Parent=MsG0180003670.01.T01
Chr1 exon 66361597 66361625 66361597 ID=MsG0180003670.01.T01:exon:3678;Parent=MsG0180003670.01.T01
Chr1 exon 66360871 66360927 66360871 ID=MsG0180003670.01.T01:exon:3677;Parent=MsG0180003670.01.T01
Chr1 exon 66360745 66360778 66360745 ID=MsG0180003670.01.T01:exon:3676;Parent=MsG0180003670.01.T01
Chr1 exon 66360225 66360444 66360225 ID=MsG0180003670.01.T01:exon:3675;Parent=MsG0180003670.01.T01
Chr1 exon 66360136 66360142 66360136 ID=MsG0180003670.01.T01:exon:3674;Parent=MsG0180003670.01.T01
Chr1 CDS 66360136 66360142 66360136 ID=MsG0180003670.01.T01:cds;Parent=MsG0180003670.01.T01
Chr1 CDS 66360225 66360444 66360225 ID=MsG0180003670.01.T01:cds;Parent=MsG0180003670.01.T01
Chr1 CDS 66360745 66360778 66360745 ID=MsG0180003670.01.T01:cds;Parent=MsG0180003670.01.T01
Chr1 CDS 66360871 66360927 66360871 ID=MsG0180003670.01.T01:cds;Parent=MsG0180003670.01.T01
Chr1 CDS 66361597 66361625 66361597 ID=MsG0180003670.01.T01:cds;Parent=MsG0180003670.01.T01
Chr1 CDS 66362259 66362337 66362259 ID=MsG0180003670.01.T01:cds;Parent=MsG0180003670.01.T01
Chr1 CDS 66362420 66362485 66362420 ID=MsG0180003670.01.T01:cds;Parent=MsG0180003670.01.T01
Chr1 CDS 66362567 66362674 66362567 ID=MsG0180003670.01.T01:cds;Parent=MsG0180003670.01.T01
Chr1 CDS 66363277 66363342 66363277 ID=MsG0180003670.01.T01:cds;Parent=MsG0180003670.01.T01
Chr1 CDS 66363427 66363629 66363427 ID=MsG0180003670.01.T01:cds;Parent=MsG0180003670.01.T01
Chr1 CDS 66363750 66363792 66363750 ID=MsG0180003670.01.T01:cds;Parent=MsG0180003670.01.T01
Chr1 three_prime_UTR 66363793 66364049 66363793 ID=MsG0180003670.01.T01:three_prime_utr;Parent=MsG0180003670.01.T01
Gene Sequence

>MsG0180003670.01.T01

ATGGAAGAAAAGTGGAAGCGAATAGAACGCGTCGCTTACACCTCACTCACATTTTCCCATTTCCACCTCTACTTAAGCATCCTCTTTCCTTCCATTGCATACTCAACAAGCAAAGCAACCATTCCATTTCATTTCATTTCATTCCTTCTTCACGTTTTCCTTACTTCCGTATTCTCTCTCCCCCTCGAGATCTGTGCTTCCTCTTCATCCTTCTCTTCATTCTCACTGCTAATGGCTTCTGAATCGGAAACTGTCACTGTGGGTGTTTCTGAGGTACCACCAATTGCAGTTTCTGAAATCGTGATGAATGTTAATTTTGTCCTGAAGCTCCCAGGATCTTCAATTGTCTTTTTCAAAATTTCAATGCGATTGTTTCGAATCACAACTTGGACGGTTCCTCTTTTGAACTTGTACATTCTTAAGGTGGTGGTTGAAATTGGGAAAGGAAACAAGGTGAAATATGAACTTGACAAGAAAACTGGACTTATTAAGGTTGACCGGGTCCTTTACTCATCAGTTGTGTATCCTCACAACTATGGGTTTATCCCCCGCACTATTTGTGAGGATGGTGACCCCATTGATGTCTTGGTTATTATGCAGGAGCCAGTTCTTCCTGGCTGCTTTCTTCGTGCCAAAGCTATTGGTCTCATGCCTATGATTGATCAGGGTGAGAAAGATGACAAGATCATTGCTGTCTGTGCTGATGATCCTGAGTATAGGCATTACAATGATATCAAGGAGCTCCCTCCACATCGTTTAGCTGAAATCCGTCGCTTTTTTGAAGATTACAAGAAGAATGAGAACAAGGAAGTTGCAGTTAACGACTTCCTTCCTTCCTCATCTGCCTTTGAAGCTATTGAGCATTCCATGACCTTGTATGCAGACTACGTTGTGGAGAGTTTGAGGCGGTAG
Protein sequence

>MsG0180003670.01.T01

MEEKWKRIERVAYTSLTFSHFHLYLSILFPSIAYSTSKATIPFHFISFLLHVFLTSVFSLPLEICASSSSFSSFSLLMASESETVTVGVSEVPPIAVSEIVMNVNFVLKLPGSSIVFFKISMRLFRITTWTVPLLNLYILKVVVEIGKGNKVKYELDKKTGLIKVDRVLYSSVVYPHNYGFIPRTICEDGDPIDVLVIMQEPVLPGCFLRAKAIGLMPMIDQGEKDDKIIAVCADDPEYRHYNDIKELPPHRLAEIRRFFEDYKKNENKEVAVNDFLPSSSAFEAIEHSMTLYADYVVESLRR*