Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0180004000.01.T01 | XP_003590678.1 | 89.313 | 393 | 9 | 1 | 1 | 360 | 1 | 393 | 0 | 707 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0180004000.01.T01 | A0MFS5 | 33.934 | 333 | 193 | 10 | 36 | 348 | 79 | 404 | 9.03E-39 | 147 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0180004000.01.T01 | G7IEG0 | 89.313 | 393 | 9 | 1 | 1 | 360 | 1 | 393 | 0.0 | 707 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|---|---|
| MsG0180004000.01 | MsG0180005400.01 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0180004000.01.T01 | MTR_1g072550 | 89.313 | 393 | 9 | 1 | 1 | 360 | 1 | 393 | 0.0 | 707 |
| MsG0180004000.01.T01 | MTR_1g032040 | 86.889 | 389 | 18 | 1 | 1 | 356 | 1 | 389 | 0.0 | 656 |
| MsG0180004000.01.T01 | MTR_1g032380 | 86.889 | 389 | 18 | 1 | 1 | 356 | 1 | 389 | 0.0 | 656 |
| MsG0180004000.01.T01 | MTR_1g019170 | 30.719 | 306 | 185 | 7 | 36 | 333 | 26 | 312 | 2.12e-37 | 139 |
| MsG0180004000.01.T01 | MTR_3g029990 | 31.046 | 306 | 184 | 7 | 36 | 333 | 26 | 312 | 3.31e-37 | 142 |
| MsG0180004000.01.T01 | MTR_8g089370 | 29.139 | 302 | 209 | 4 | 21 | 319 | 23 | 322 | 3.55e-37 | 138 |
| MsG0180004000.01.T01 | MTR_3g029990 | 31.046 | 306 | 184 | 7 | 36 | 333 | 26 | 312 | 3.92e-37 | 141 |
| MsG0180004000.01.T01 | MTR_7g117270 | 35.093 | 322 | 184 | 10 | 30 | 334 | 81 | 394 | 4.53e-37 | 140 |
| MsG0180004000.01.T01 | MTR_7g107280 | 28.387 | 310 | 210 | 3 | 18 | 319 | 15 | 320 | 1.25e-36 | 137 |
| MsG0180004000.01.T01 | MTR_0153s0070 | 33.333 | 300 | 180 | 6 | 17 | 302 | 21 | 314 | 2.97e-36 | 134 |
| MsG0180004000.01.T01 | MTR_1g098960 | 30.392 | 306 | 186 | 7 | 36 | 333 | 28 | 314 | 7.47e-36 | 135 |
| MsG0180004000.01.T01 | MTR_3g105530 | 33.333 | 300 | 180 | 6 | 17 | 302 | 14 | 307 | 3.63e-35 | 133 |
| MsG0180004000.01.T01 | MTR_3g448960 | 28.743 | 334 | 210 | 7 | 36 | 360 | 28 | 342 | 7.23e-35 | 133 |
| MsG0180004000.01.T01 | MTR_0153s0070 | 34.717 | 265 | 157 | 5 | 39 | 293 | 17 | 275 | 6.21e-34 | 129 |
| MsG0180004000.01.T01 | MTR_6g033595 | 29.562 | 274 | 181 | 4 | 37 | 302 | 50 | 319 | 1.71e-30 | 121 |
| MsG0180004000.01.T01 | MTR_3g030020 | 30.682 | 264 | 155 | 8 | 78 | 333 | 26 | 269 | 2.68e-29 | 116 |
| MsG0180004000.01.T01 | MTR_3g063230 | 28.520 | 277 | 183 | 6 | 37 | 302 | 54 | 326 | 6.73e-29 | 116 |
| MsG0180004000.01.T01 | MTR_6g043850 | 26.812 | 276 | 186 | 7 | 24 | 294 | 19 | 283 | 3.46e-28 | 116 |
| MsG0180004000.01.T01 | MTR_4g053720 | 25.407 | 307 | 210 | 6 | 24 | 319 | 13 | 311 | 1.15e-26 | 108 |
| MsG0180004000.01.T01 | MTR_2g067960 | 28.682 | 258 | 172 | 4 | 53 | 302 | 31 | 284 | 2.86e-24 | 103 |
| MsG0180004000.01.T01 | MTR_3g074730 | 31.159 | 276 | 176 | 5 | 40 | 309 | 62 | 329 | 2.20e-21 | 94.7 |
| MsG0180004000.01.T01 | MTR_3g063230 | 26.740 | 273 | 169 | 10 | 37 | 302 | 54 | 302 | 9.39e-21 | 93.2 |
| MsG0180004000.01.T01 | MTR_8g102038 | 31.892 | 185 | 119 | 4 | 115 | 292 | 54 | 238 | 9.43e-21 | 90.1 |
| MsG0180004000.01.T01 | MTR_7g088530 | 26.459 | 257 | 177 | 3 | 66 | 319 | 78 | 325 | 1.12e-20 | 92.8 |
| MsG0180004000.01.T01 | MTR_7g018630 | 27.333 | 300 | 185 | 10 | 35 | 319 | 51 | 332 | 1.71e-18 | 86.7 |
| MsG0180004000.01.T01 | MTR_2g017885 | 38.889 | 90 | 54 | 1 | 122 | 210 | 1 | 90 | 1.24e-15 | 72.0 |
| MsG0180004000.01.T01 | MTR_3g083350 | 25.153 | 326 | 223 | 10 | 9 | 319 | 27 | 346 | 3.54e-15 | 77.0 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0180004000.01.T01 | AT3G63090 | 64.946 | 368 | 96 | 1 | 20 | 354 | 23 | 390 | 1.76e-175 | 494 |
| MsG0180004000.01.T01 | AT2G31290 | 32.302 | 291 | 169 | 6 | 36 | 319 | 29 | 298 | 1.01e-42 | 154 |
| MsG0180004000.01.T01 | AT2G31290 | 32.302 | 291 | 169 | 6 | 36 | 319 | 29 | 298 | 1.01e-42 | 154 |
| MsG0180004000.01.T01 | AT4G01037 | 33.934 | 333 | 193 | 10 | 36 | 348 | 79 | 404 | 9.20e-40 | 147 |
| MsG0180004000.01.T01 | AT3G58520 | 28.612 | 353 | 226 | 8 | 1 | 334 | 1 | 346 | 2.25e-36 | 136 |
| MsG0180004000.01.T01 | AT5G48040 | 27.414 | 321 | 213 | 6 | 3 | 319 | 14 | 318 | 1.59e-35 | 134 |
| MsG0180004000.01.T01 | AT5G21970 | 29.697 | 330 | 205 | 9 | 23 | 333 | 38 | 359 | 2.59e-35 | 134 |
| MsG0180004000.01.T01 | AT5G21970 | 29.697 | 330 | 205 | 9 | 23 | 333 | 38 | 359 | 2.59e-35 | 134 |
| MsG0180004000.01.T01 | AT3G58520 | 28.531 | 354 | 213 | 11 | 1 | 334 | 1 | 334 | 1.46e-32 | 126 |
| MsG0180004000.01.T01 | AT4G33495 | 27.528 | 356 | 219 | 7 | 37 | 357 | 48 | 399 | 3.13e-32 | 125 |
| MsG0180004000.01.T01 | AT1G71850 | 28.723 | 282 | 173 | 8 | 37 | 302 | 33 | 302 | 5.07e-32 | 125 |
| MsG0180004000.01.T01 | AT4G24320 | 28.105 | 306 | 199 | 8 | 26 | 319 | 16 | 312 | 2.17e-25 | 106 |
| MsG0180004000.01.T01 | AT1G79120 | 28.000 | 300 | 194 | 6 | 34 | 319 | 61 | 352 | 3.03e-25 | 105 |
| MsG0180004000.01.T01 | AT1G79120 | 28.000 | 300 | 194 | 6 | 34 | 319 | 61 | 352 | 3.03e-25 | 105 |
| MsG0180004000.01.T01 | AT1G06440 | 27.609 | 297 | 195 | 8 | 21 | 302 | 19 | 310 | 3.46e-23 | 99.8 |
| MsG0180004000.01.T01 | AT5G45790 | 27.372 | 274 | 178 | 7 | 37 | 302 | 70 | 330 | 2.02e-22 | 98.2 |
| MsG0180004000.01.T01 | AT4G08940 | 30.797 | 276 | 170 | 8 | 41 | 309 | 71 | 332 | 1.62e-21 | 95.1 |
| MsG0180004000.01.T01 | AT5G45790 | 29.515 | 227 | 140 | 6 | 83 | 302 | 32 | 245 | 2.63e-20 | 91.3 |
| MsG0180004000.01.T01 | AT2G39120 | 26.148 | 283 | 188 | 8 | 15 | 288 | 11 | 281 | 2.98e-19 | 88.6 |
| MsG0180004000.01.T01 | AT5G62990 | 25.836 | 329 | 214 | 10 | 3 | 319 | 38 | 348 | 1.19e-15 | 78.6 |
Find 85 sgRNAs with CRISPR-Local
Find 108 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CGATCATCTCCTTCAGTTTC+TGG | 0.104424 | 1:-71613063 | MsG0180004000.01.T01:CDS |
| CTTCATGTGAAGAGGGAATT+TGG | 0.191525 | 1:-71612936 | MsG0180004000.01.T01:CDS |
| AGGAGATGAGGGAGTGGATT+AGG | 0.209979 | 1:-71612689 | MsG0180004000.01.T01:CDS |
| AAATTTCACAGGTTCGGTTT+TGG | 0.299650 | 1:+71613097 | None:intergenic |
| AAAGTAGGGCTACTGGGATT+AGG | 0.305980 | 1:-71612761 | MsG0180004000.01.T01:CDS |
| GGAGATGAGGGAGTGGATTA+GGG | 0.318583 | 1:-71612688 | MsG0180004000.01.T01:CDS |
| GGAAGAGAAACAGATTTATA+AGG | 0.324584 | 1:-71613039 | MsG0180004000.01.T01:CDS |
| AGATGGAGAAGAGGTCTGTT+GGG | 0.329836 | 1:-71612599 | MsG0180004000.01.T01:CDS |
| AGGATTCCAGTGCCGATTCT+TGG | 0.329887 | 1:-71612540 | MsG0180004000.01.T01:CDS |
| GAAAGTTCTGCGATGAATAT+AGG | 0.333511 | 1:-71612518 | MsG0180004000.01.T01:CDS |
| TTACGAGGATGTTTCTCATT+TGG | 0.335472 | 1:-71612637 | MsG0180004000.01.T01:CDS |
| CTATAGCTTGGTCTAGTGAT+TGG | 0.353320 | 1:+71613303 | None:intergenic |
| CAAAATCTGTTATTGAGAAA+AGG | 0.361339 | 1:-71612794 | MsG0180004000.01.T01:CDS |
| CCAGTTAACCTAAAATATTC+CGG | 0.376533 | 1:+71612873 | None:intergenic |
| AAGTAGGGCTACTGGGATTA+GGG | 0.379922 | 1:-71612760 | MsG0180004000.01.T01:CDS |
| TTTCTCTTTCGTTGTATAAG+AGG | 0.387708 | 1:-71612560 | MsG0180004000.01.T01:CDS |
| CACAACTTAGAAACGATTAA+CGG | 0.392975 | 1:+71613008 | None:intergenic |
| AGAGAAAGTTAAGCAAGATA+TGG | 0.400457 | 1:-71612287 | MsG0180004000.01.T01:CDS |
| GAGATGGAGAAGAGGTCTGT+TGG | 0.413891 | 1:-71612600 | MsG0180004000.01.T01:CDS |
| TATCCAGTCTCAAAGTAGTA+TGG | 0.418015 | 1:-71613334 | MsG0180004000.01.T01:CDS |
| TAACCTTGAGACGCATCCTT+TGG | 0.425075 | 1:+71613183 | None:intergenic |
| CTAAAATATTCCGGATACCT+TGG | 0.426664 | 1:+71612882 | None:intergenic |
| TGATTTGGTTCCAAGGTATC+CGG | 0.427927 | 1:-71612892 | MsG0180004000.01.T01:CDS |
| AAAATCTGTTATTGAGAAAA+GGG | 0.432851 | 1:-71612793 | MsG0180004000.01.T01:CDS |
| TTTAGGTTAACTGGTTTACC+TGG | 0.437466 | 1:-71612864 | MsG0180004000.01.T01:CDS |
| GTTTATCTTGTTCTATAGCT+TGG | 0.441093 | 1:+71613291 | None:intergenic |
| GTTGATGATGTCAAAGGATA+AGG | 0.441454 | 1:-71612979 | MsG0180004000.01.T01:CDS |
| ACGAAAGAGAAAGCAATTCA+TGG | 0.441460 | 1:+71612571 | None:intergenic |
| ACGGAGAAATTTCACAGGTT+CGG | 0.447529 | 1:+71613091 | None:intergenic |
| TCGCAGAACTTTCCAAGAAT+CGG | 0.453730 | 1:+71612528 | None:intergenic |
| GAAGAGGAAAGTAGGGCTAC+TGG | 0.454889 | 1:-71612768 | MsG0180004000.01.T01:CDS |
| TTCAATGTAAAGCTTCCTCC+AGG | 0.458954 | 1:-71612726 | MsG0180004000.01.T01:CDS |
| ATAAATTGCTTCATGTGAAG+AGG | 0.460378 | 1:-71612944 | MsG0180004000.01.T01:CDS |
| TCCAGGGTTTGTGTTGAAGA+AGG | 0.465720 | 1:-71612709 | MsG0180004000.01.T01:CDS |
| CCTTGAGACGCATCCTTTGG+CGG | 0.467784 | 1:+71613186 | None:intergenic |
| CTGAGCTGCTGAAGGAGGGT+TGG | 0.468811 | 1:-71612342 | MsG0180004000.01.T01:CDS |
| TGAGGGAGTGGATTAGGGAT+TGG | 0.471413 | 1:-71612683 | MsG0180004000.01.T01:CDS |
| AAAGGGCTGAAGAGGAAAGT+AGG | 0.479784 | 1:-71612776 | MsG0180004000.01.T01:CDS |
| TGTGTTGAAGAAGGAGATGA+GGG | 0.491644 | 1:-71612700 | MsG0180004000.01.T01:CDS |
| GGGCTACTGGGATTAGGGTT+AGG | 0.495666 | 1:-71612755 | MsG0180004000.01.T01:CDS |
| AGCTGCTGAAGGAGGGTTGG+CGG | 0.498108 | 1:-71612339 | MsG0180004000.01.T01:CDS |
| AAGGGCTGAAGAGGAAAGTA+GGG | 0.511043 | 1:-71612775 | MsG0180004000.01.T01:CDS |
| TGAAGAAGGAGATGAGGGAG+TGG | 0.511255 | 1:-71612695 | MsG0180004000.01.T01:CDS |
| GTTGTTGATGTAGTAGCAGA+AGG | 0.516086 | 1:+71613388 | None:intergenic |
| AAGAGGAAAGTAGGGCTACT+GGG | 0.519587 | 1:-71612767 | MsG0180004000.01.T01:CDS |
| ATCTCGAGAAACGCCGCCAA+AGG | 0.521204 | 1:-71613199 | MsG0180004000.01.T01:CDS |
| GCGCCATACTACTTTGAGAC+TGG | 0.524282 | 1:+71613331 | None:intergenic |
| GGAGTGGATTAGGGATTGGA+TGG | 0.525757 | 1:-71612679 | MsG0180004000.01.T01:CDS |
| TTGTGTTGAAGAAGGAGATG+AGG | 0.526747 | 1:-71612701 | MsG0180004000.01.T01:CDS |
| AACTTTCCAAGAATCGGCAC+TGG | 0.532533 | 1:+71612534 | None:intergenic |
| TCCTTCTTCAACACAAACCC+TGG | 0.543626 | 1:+71612708 | None:intergenic |
| CTTCTAGAGAGATGGAGAAG+AGG | 0.548178 | 1:-71612608 | MsG0180004000.01.T01:CDS |
| TTAGGTTAACTGGTTTACCT+GGG | 0.552423 | 1:-71612863 | MsG0180004000.01.T01:CDS |
| TATTGAGAAAAGGGCTGAAG+AGG | 0.554667 | 1:-71612784 | MsG0180004000.01.T01:CDS |
| GGAGCAAGCTTCTAGAGAGA+TGG | 0.559050 | 1:-71612616 | MsG0180004000.01.T01:CDS |
| TCTCTTCCTCCAGAAACTGA+AGG | 0.563582 | 1:+71613054 | None:intergenic |
| GATGGAGAAGAGGTCTGTTG+GGG | 0.566636 | 1:-71612598 | MsG0180004000.01.T01:CDS |
| ATTTGCTGAGCTGCTGAAGG+AGG | 0.567543 | 1:-71612347 | MsG0180004000.01.T01:CDS |
| GGAAGCTTTACATTGAAACT+AGG | 0.567947 | 1:+71612732 | None:intergenic |
| CCGCCAAAGGATGCGTCTCA+AGG | 0.569230 | 1:-71613186 | MsG0180004000.01.T01:CDS |
| TTAACTGGTTTACCTGGGGA+GGG | 0.572811 | 1:-71612858 | MsG0180004000.01.T01:CDS |
| AAATGAGAAACATCCTCGTA+AGG | 0.582013 | 1:+71612639 | None:intergenic |
| GTTAACTGGTTTACCTGGGG+AGG | 0.585489 | 1:-71612859 | MsG0180004000.01.T01:CDS |
| TAAATTGCTTCATGTGAAGA+GGG | 0.587758 | 1:-71612943 | MsG0180004000.01.T01:CDS |
| TAGATTTGCTGAGCTGCTGA+AGG | 0.597476 | 1:-71612350 | MsG0180004000.01.T01:CDS |
| GAGAACTTCTTTGACGACGC+GGG | 0.600948 | 1:+71613253 | None:intergenic |
| TGATTATGTTTCGCCTTACG+AGG | 0.603847 | 1:-71612652 | MsG0180004000.01.T01:CDS |
| TTTGCTGAGCTGCTGAAGGA+GGG | 0.605834 | 1:-71612346 | MsG0180004000.01.T01:CDS |
| CGTAGAGGGATGACTTGACC+TGG | 0.606314 | 1:+71613224 | None:intergenic |
| ATATGGAACTTGTAGCCACA+AGG | 0.614696 | 1:-71612270 | MsG0180004000.01.T01:CDS |
| TCATCTCCTTCAGTTTCTGG+AGG | 0.615466 | 1:-71613060 | MsG0180004000.01.T01:CDS |
| GGAGGGTTGGCGGCTAAGAG+CGG | 0.618803 | 1:-71612329 | MsG0180004000.01.T01:CDS |
| TAGGTTAACTGGTTTACCTG+GGG | 0.623812 | 1:-71612862 | MsG0180004000.01.T01:CDS |
| TAAATTGTTGATGATGTCAA+AGG | 0.624204 | 1:-71612985 | MsG0180004000.01.T01:CDS |
| GAAGGAGATGATCGCTGACA+CGG | 0.626335 | 1:+71613072 | None:intergenic |
| AAAGAAGTTCTCAATGAACC+AGG | 0.644115 | 1:-71613242 | MsG0180004000.01.T01:CDS |
| TCAATGTAAAGCTTCCTCCA+GGG | 0.646952 | 1:-71612725 | MsG0180004000.01.T01:CDS |
| CTGACACGGAGAAATTTCAC+AGG | 0.652514 | 1:+71613086 | None:intergenic |
| GTTTCTCGAGATAACGTAGA+GGG | 0.653076 | 1:+71613210 | None:intergenic |
| TCTCAAAGTAGTATGGCGCA+AGG | 0.655878 | 1:-71613327 | MsG0180004000.01.T01:CDS |
| TTACTATTCAGCAACCCTTG+TGG | 0.658533 | 1:+71612255 | None:intergenic |
| TATGGAACTTGTAGCCACAA+GGG | 0.664603 | 1:-71612269 | MsG0180004000.01.T01:CDS |
| TTCTTCAACACAAACCCTGG+AGG | 0.672314 | 1:+71612711 | None:intergenic |
| CGTTTCTCGAGATAACGTAG+AGG | 0.709195 | 1:+71613209 | None:intergenic |
| TGAGAACTTCTTTGACGACG+CGG | 0.726715 | 1:+71613252 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAATCAACTAAAAAATCATT+AGG | + | Chr1:71612768-71612787 | None:intergenic | 15.0% |
| !! | AATCAACTAAAAAATCATTA+GGG | + | Chr1:71612767-71612786 | None:intergenic | 15.0% |
| !!! | TAATGATTTTTTAGTTGATT+TGG | - | Chr1:71612767-71612786 | MsG0180004000.01.T01:CDS | 15.0% |
| !! | AAAATCTGTTATTGAGAAAA+GGG | - | Chr1:71612881-71612900 | MsG0180004000.01.T01:CDS | 20.0% |
| !! | TAGTATACATCGAATAAAAA+AGG | + | Chr1:71612543-71612562 | None:intergenic | 20.0% |
| !!! | AAAAGGATTTTGATTCAAAA+AGG | + | Chr1:71612526-71612545 | None:intergenic | 20.0% |
| ! | ATATTCTATATGTCGTTGAA+AGG | - | Chr1:71613220-71613239 | MsG0180004000.01.T01:CDS | 25.0% |
| ! | CAAAATCTGTTATTGAGAAA+AGG | - | Chr1:71612880-71612899 | MsG0180004000.01.T01:CDS | 25.0% |
| !! | CTTTTCTTGAATTGGTTAAT+TGG | - | Chr1:71612844-71612863 | MsG0180004000.01.T01:CDS | 25.0% |
| !!! | TAAATTGTTGATGATGTCAA+AGG | - | Chr1:71612689-71612708 | MsG0180004000.01.T01:CDS | 25.0% |
| AGAGAAAGTTAAGCAAGATA+TGG | - | Chr1:71613387-71613406 | MsG0180004000.01.T01:CDS | 30.0% | |
| ATAAATTGCTTCATGTGAAG+AGG | - | Chr1:71612730-71612749 | MsG0180004000.01.T01:CDS | 30.0% | |
| CACAACTTAGAAACGATTAA+CGG | + | Chr1:71612669-71612688 | None:intergenic | 30.0% | |
| CCAGTTAACCTAAAATATTC+CGG | + | Chr1:71612804-71612823 | None:intergenic | 30.0% | |
| GGAAGAGAAACAGATTTATA+AGG | - | Chr1:71612635-71612654 | MsG0180004000.01.T01:CDS | 30.0% | |
| GTTTATCTTGTTCTATAGCT+TGG | + | Chr1:71612386-71612405 | None:intergenic | 30.0% | |
| TAAATTGCTTCATGTGAAGA+GGG | - | Chr1:71612731-71612750 | MsG0180004000.01.T01:CDS | 30.0% | |
| TTTCTCTTTCGTTGTATAAG+AGG | - | Chr1:71613114-71613133 | MsG0180004000.01.T01:CDS | 30.0% | |
| ! | ATAACAGATTTTGCAAACTC+AGG | + | Chr1:71612873-71612892 | None:intergenic | 30.0% |
| ! | GGAAGTTTGAATTTTTGTCT+TGG | + | Chr1:71612268-71612287 | None:intergenic | 30.0% |
| ! | GGGAAAATCTTTTCTTGAAT+TGG | - | Chr1:71612836-71612855 | MsG0180004000.01.T01:CDS | 30.0% |
| ! | TAACAGATTTTGCAAACTCA+GGG | + | Chr1:71612872-71612891 | None:intergenic | 30.0% |
| !!! | TTTTAGTTGATTTGGTTCCA+AGG | - | Chr1:71612775-71612794 | MsG0180004000.01.T01:CDS | 30.0% |
| AAAGAAGTTCTCAATGAACC+AGG | - | Chr1:71612432-71612451 | MsG0180004000.01.T01:intron | 35.0% | |
| AAATGAGAAACATCCTCGTA+AGG | + | Chr1:71613038-71613057 | None:intergenic | 35.0% | |
| ACGAAAGAGAAAGCAATTCA+TGG | + | Chr1:71613106-71613125 | None:intergenic | 35.0% | |
| CTAAAATATTCCGGATACCT+TGG | + | Chr1:71612795-71612814 | None:intergenic | 35.0% | |
| GAAAGTTCTGCGATGAATAT+AGG | - | Chr1:71613156-71613175 | MsG0180004000.01.T01:CDS | 35.0% | |
| GGAAGCTTTACATTGAAACT+AGG | + | Chr1:71612945-71612964 | None:intergenic | 35.0% | |
| TATCCAGTCTCAAAGTAGTA+TGG | - | Chr1:71612340-71612359 | MsG0180004000.01.T01:CDS | 35.0% | |
| TCTATATGTCGTTGAAAGGT+GGG | - | Chr1:71613224-71613243 | MsG0180004000.01.T01:CDS | 35.0% | |
| TTACGAGGATGTTTCTCATT+TGG | - | Chr1:71613037-71613056 | MsG0180004000.01.T01:CDS | 35.0% | |
| TTCTATATGTCGTTGAAAGG+TGG | - | Chr1:71613223-71613242 | MsG0180004000.01.T01:CDS | 35.0% | |
| ! | TTAGGTTAACTGGTTTACCT+GGG | - | Chr1:71612811-71612830 | MsG0180004000.01.T01:CDS | 35.0% |
| ! | TTTAGGTTAACTGGTTTACC+TGG | - | Chr1:71612810-71612829 | MsG0180004000.01.T01:CDS | 35.0% |
| !! | AAATTTCACAGGTTCGGTTT+TGG | + | Chr1:71612580-71612599 | None:intergenic | 35.0% |
| !! | AATTTCACAGGTTCGGTTTT+GGG | + | Chr1:71612579-71612598 | None:intergenic | 35.0% |
| !! | CAAGGTATCCGGAATATTTT+AGG | - | Chr1:71612793-71612812 | MsG0180004000.01.T01:CDS | 35.0% |
| !! | CATTTTCAAGCGCTTTTACA+AGG | - | Chr1:71613189-71613208 | MsG0180004000.01.T01:CDS | 35.0% |
| !! | CTATCTTTTATCTGAAGCAG+TGG | + | Chr1:71613307-71613326 | None:intergenic | 35.0% |
| !! | GTTGATGATGTCAAAGGATA+AGG | - | Chr1:71612695-71612714 | MsG0180004000.01.T01:CDS | 35.0% |
| !!! | CCGGAATATTTTAGGTTAAC+TGG | - | Chr1:71612801-71612820 | MsG0180004000.01.T01:CDS | 35.0% |
| ACGGAGAAATTTCACAGGTT+CGG | + | Chr1:71612586-71612605 | None:intergenic | 40.0% | |
| ATATGGAACTTGTAGCCACA+AGG | - | Chr1:71613404-71613423 | MsG0180004000.01.T01:CDS | 40.0% | |
| CTATAGCTTGGTCTAGTGAT+TGG | + | Chr1:71612374-71612393 | None:intergenic | 40.0% | |
| CTTCATGTGAAGAGGGAATT+TGG | - | Chr1:71612738-71612757 | MsG0180004000.01.T01:CDS | 40.0% | |
| GTTGTTGATGTAGTAGCAGA+AGG | + | Chr1:71612289-71612308 | None:intergenic | 40.0% | |
| GTTTCTCGAGATAACGTAGA+GGG | + | Chr1:71612467-71612486 | None:intergenic | 40.0% | |
| TATGGAACTTGTAGCCACAA+GGG | - | Chr1:71613405-71613424 | MsG0180004000.01.T01:CDS | 40.0% | |
| TATTGAGAAAAGGGCTGAAG+AGG | - | Chr1:71612890-71612909 | MsG0180004000.01.T01:CDS | 40.0% | |
| TCAATGTAAAGCTTCCTCCA+GGG | - | Chr1:71612949-71612968 | MsG0180004000.01.T01:CDS | 40.0% | |
| TCGCAGAACTTTCCAAGAAT+CGG | + | Chr1:71613149-71613168 | None:intergenic | 40.0% | |
| TGATTATGTTTCGCCTTACG+AGG | - | Chr1:71613022-71613041 | MsG0180004000.01.T01:CDS | 40.0% | |
| TGTGTTGAAGAAGGAGATGA+GGG | - | Chr1:71612974-71612993 | MsG0180004000.01.T01:CDS | 40.0% | |
| TTCAATGTAAAGCTTCCTCC+AGG | - | Chr1:71612948-71612967 | MsG0180004000.01.T01:CDS | 40.0% | |
| TTGTGTTGAAGAAGGAGATG+AGG | - | Chr1:71612973-71612992 | MsG0180004000.01.T01:CDS | 40.0% | |
| ! | ATGCTGAGAGAAGCATATGA+AGG | - | Chr1:71613259-71613278 | MsG0180004000.01.T01:CDS | 40.0% |
| ! | TAGGTTAACTGGTTTACCTG+GGG | - | Chr1:71612812-71612831 | MsG0180004000.01.T01:CDS | 40.0% |
| ! | TGCTGAGAGAAGCATATGAA+GGG | - | Chr1:71613260-71613279 | MsG0180004000.01.T01:CDS | 40.0% |
| !! | AAGCGCTTTTACAAGGCATT+CGG | - | Chr1:71613196-71613215 | MsG0180004000.01.T01:CDS | 40.0% |
| !! | TGATTTGGTTCCAAGGTATC+CGG | - | Chr1:71612782-71612801 | MsG0180004000.01.T01:CDS | 40.0% |
| AAAGGGCTGAAGAGGAAAGT+AGG | - | Chr1:71612898-71612917 | MsG0180004000.01.T01:CDS | 45.0% | |
| AAAGTAGGGCTACTGGGATT+AGG | - | Chr1:71612913-71612932 | MsG0180004000.01.T01:CDS | 45.0% | |
| AACTTTCCAAGAATCGGCAC+TGG | + | Chr1:71613143-71613162 | None:intergenic | 45.0% | |
| AAGAGGAAAGTAGGGCTACT+GGG | - | Chr1:71612907-71612926 | MsG0180004000.01.T01:CDS | 45.0% | |
| AAGGGCTGAAGAGGAAAGTA+GGG | - | Chr1:71612899-71612918 | MsG0180004000.01.T01:CDS | 45.0% | |
| AAGTAGGGCTACTGGGATTA+GGG | - | Chr1:71612914-71612933 | MsG0180004000.01.T01:CDS | 45.0% | |
| AGATGGAGAAGAGGTCTGTT+GGG | - | Chr1:71613075-71613094 | MsG0180004000.01.T01:CDS | 45.0% | |
| CGATCATCTCCTTCAGTTTC+TGG | - | Chr1:71612611-71612630 | MsG0180004000.01.T01:CDS | 45.0% | |
| CGTTTCTCGAGATAACGTAG+AGG | + | Chr1:71612468-71612487 | None:intergenic | 45.0% | |
| CTGACACGGAGAAATTTCAC+AGG | + | Chr1:71612591-71612610 | None:intergenic | 45.0% | |
| TAACCTTGAGACGCATCCTT+TGG | + | Chr1:71612494-71612513 | None:intergenic | 45.0% | |
| TCCAGGGTTTGTGTTGAAGA+AGG | - | Chr1:71612965-71612984 | MsG0180004000.01.T01:CDS | 45.0% | |
| TCCTTCTTCAACACAAACCC+TGG | + | Chr1:71612969-71612988 | None:intergenic | 45.0% | |
| TCTCAAAGTAGTATGGCGCA+AGG | - | Chr1:71612347-71612366 | MsG0180004000.01.T01:CDS | 45.0% | |
| TCTCTTCCTCCAGAAACTGA+AGG | + | Chr1:71612623-71612642 | None:intergenic | 45.0% | |
| TGAGAACTTCTTTGACGACG+CGG | + | Chr1:71612425-71612444 | None:intergenic | 45.0% | |
| TTCTTCAACACAAACCCTGG+AGG | + | Chr1:71612966-71612985 | None:intergenic | 45.0% | |
| ! | AGAAAAGATTTTCCCTCCCC+AGG | + | Chr1:71612831-71612850 | None:intergenic | 45.0% |
| ! | CTTCTAGAGAGATGGAGAAG+AGG | - | Chr1:71613066-71613085 | MsG0180004000.01.T01:CDS | 45.0% |
| ! | GCTGAGAGAAGCATATGAAG+GGG | - | Chr1:71613261-71613280 | MsG0180004000.01.T01:CDS | 45.0% |
| ! | TCATCTCCTTCAGTTTCTGG+AGG | - | Chr1:71612614-71612633 | MsG0180004000.01.T01:CDS | 45.0% |
| ! | TTAACTGGTTTACCTGGGGA+GGG | - | Chr1:71612816-71612835 | MsG0180004000.01.T01:CDS | 45.0% |
| !! | TAGATTTGCTGAGCTGCTGA+AGG | - | Chr1:71613324-71613343 | MsG0180004000.01.T01:CDS | 45.0% |
| GAAGAGGAAAGTAGGGCTAC+TGG | - | Chr1:71612906-71612925 | MsG0180004000.01.T01:CDS | 50.0% | |
| GAAGGAGATGATCGCTGACA+CGG | + | Chr1:71612605-71612624 | None:intergenic | 50.0% | |
| GAGAACTTCTTTGACGACGC+GGG | + | Chr1:71612424-71612443 | None:intergenic | 50.0% | |
| GAGATGGAGAAGAGGTCTGT+TGG | - | Chr1:71613074-71613093 | MsG0180004000.01.T01:CDS | 50.0% | |
| GATGGAGAAGAGGTCTGTTG+GGG | - | Chr1:71613076-71613095 | MsG0180004000.01.T01:CDS | 50.0% | |
| TGAAGAAGGAGATGAGGGAG+TGG | - | Chr1:71612979-71612998 | MsG0180004000.01.T01:CDS | 50.0% | |
| TTTGCTGAGCTGCTGAAGGA+GGG | - | Chr1:71613328-71613347 | MsG0180004000.01.T01:CDS | 50.0% | |
| ! | AGGAGATGAGGGAGTGGATT+AGG | - | Chr1:71612985-71613004 | MsG0180004000.01.T01:CDS | 50.0% |
| ! | ATTTGCTGAGCTGCTGAAGG+AGG | - | Chr1:71613327-71613346 | MsG0180004000.01.T01:CDS | 50.0% |
| ! | GGAGCAAGCTTCTAGAGAGA+TGG | - | Chr1:71613058-71613077 | MsG0180004000.01.T01:CDS | 50.0% |
| ! | GTTAACTGGTTTACCTGGGG+AGG | - | Chr1:71612815-71612834 | MsG0180004000.01.T01:CDS | 50.0% |
| !! | AGGATTCCAGTGCCGATTCT+TGG | - | Chr1:71613134-71613153 | MsG0180004000.01.T01:CDS | 50.0% |
| !! | GCGCCATACTACTTTGAGAC+TGG | + | Chr1:71612346-71612365 | None:intergenic | 50.0% |
| !! | GGAGATGAGGGAGTGGATTA+GGG | - | Chr1:71612986-71613005 | MsG0180004000.01.T01:CDS | 50.0% |
| !! | GGAGTGGATTAGGGATTGGA+TGG | - | Chr1:71612995-71613014 | MsG0180004000.01.T01:CDS | 50.0% |
| !! | TGAGGGAGTGGATTAGGGAT+TGG | - | Chr1:71612991-71613010 | MsG0180004000.01.T01:CDS | 50.0% |
| ATCTCGAGAAACGCCGCCAA+AGG | - | Chr1:71612475-71612494 | MsG0180004000.01.T01:intron | 55.0% | |
| CCTTGAGACGCATCCTTTGG+CGG | + | Chr1:71612491-71612510 | None:intergenic | 55.0% | |
| CGTAGAGGGATGACTTGACC+TGG | + | Chr1:71612453-71612472 | None:intergenic | 55.0% | |
| GGGCTACTGGGATTAGGGTT+AGG | - | Chr1:71612919-71612938 | MsG0180004000.01.T01:CDS | 55.0% | |
| AGCTGCTGAAGGAGGGTTGG+CGG | - | Chr1:71613335-71613354 | MsG0180004000.01.T01:CDS | 60.0% | |
| CCGCCAAAGGATGCGTCTCA+AGG | - | Chr1:71612488-71612507 | MsG0180004000.01.T01:CDS | 60.0% | |
| CTGAGCTGCTGAAGGAGGGT+TGG | - | Chr1:71613332-71613351 | MsG0180004000.01.T01:CDS | 60.0% | |
| ! | GGAGGGTTGGCGGCTAAGAG+CGG | - | Chr1:71613345-71613364 | MsG0180004000.01.T01:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| Chr1 | gene | 71612258 | 71613438 | 71612258 | ID=MsG0180004000.01;Name=MsG0180004000.01 |
| Chr1 | mRNA | 71612258 | 71613438 | 71612258 | ID=MsG0180004000.01.T01;Parent=MsG0180004000.01;Name=MsG0180004000.01.T01;_AED=0.24;_eAED=0.29;_QI=0|0|0|1|1|0.5|2|0|360 |
| Chr1 | exon | 71612479 | 71613438 | 71612479 | ID=MsG0180004000.01.T01:exon:30895;Parent=MsG0180004000.01.T01 |
| Chr1 | exon | 71612258 | 71612380 | 71612258 | ID=MsG0180004000.01.T01:exon:30894;Parent=MsG0180004000.01.T01 |
| Chr1 | CDS | 71612479 | 71613438 | 71612479 | ID=MsG0180004000.01.T01:cds;Parent=MsG0180004000.01.T01 |
| Chr1 | CDS | 71612258 | 71612380 | 71612258 | ID=MsG0180004000.01.T01:cds;Parent=MsG0180004000.01.T01 |
| Gene Sequence |
| Protein sequence |
