Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0180005400.01.T01 | XP_003589162.1 | 92.53 | 415 | 28 | 1 | 1 | 415 | 1 | 412 | 0 | 733 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0180005400.01.T01 | A0MFS5 | 30.211 | 331 | 199 | 5 | 29 | 333 | 79 | 403 | 2.33E-38 | 148 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0180005400.01.T01 | G7I2E4 | 92.530 | 415 | 28 | 1 | 1 | 415 | 1 | 412 | 0.0 | 733 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MsG0080048298.01 | MsG0180005400.01 | 0.805439 | 1.334345e-49 | 7.059520e-47 |
| MsG0180000470.01 | MsG0180005400.01 | 0.807210 | 5.648682e-50 | 3.127709e-47 |
| MsG0180001186.01 | MsG0180005400.01 | 0.814004 | 1.920923e-51 | 1.273849e-48 |
| MsG0180002460.01 | MsG0180005400.01 | 0.806470 | 8.097600e-50 | 4.398850e-47 |
| MsG0180003686.01 | MsG0180005400.01 | 0.802642 | 5.092766e-49 | 2.507607e-46 |
| MsG0180004249.01 | MsG0180005400.01 | 0.802962 | 4.374066e-49 | 2.171398e-46 |
| MsG0180004389.01 | MsG0180005400.01 | 0.808154 | 3.560406e-50 | 2.020677e-47 |
| MsG0180005400.01 | MsG0280006324.01 | 0.807111 | 5.927628e-50 | 3.273532e-47 |
| MsG0180005400.01 | MsG0280006783.01 | 0.815539 | 8.778822e-52 | 6.069420e-49 |
| MsG0180005400.01 | MsG0280007494.01 | 0.809153 | 2.177747e-50 | 1.268973e-47 |
| MsG0180005400.01 | MsG0280007955.01 | 0.841032 | 6.074570e-58 | 8.813155e-55 |
| MsG0180005400.01 | MsG0280010992.01 | 0.854257 | 1.388233e-61 | 3.082407e-58 |
| MsG0180005400.01 | MsG0280011101.01 | 0.810916 | 9.087020e-51 | 5.548176e-48 |
| MsG0180005400.01 | MsG0380011494.01 | 0.802370 | 5.794854e-49 | 2.833808e-46 |
| MsG0180005400.01 | MsG0380015332.01 | 0.800949 | 1.133461e-48 | 5.346836e-46 |
| MsG0180005400.01 | MsG0380015555.01 | 0.820297 | 7.389752e-53 | 5.824213e-50 |
| MsG0180005400.01 | MsG0380015720.01 | 0.813608 | 2.348790e-51 | 1.540963e-48 |
| MsG0180005400.01 | MsG0380016517.01 | 0.810417 | 1.164849e-50 | 7.017436e-48 |
| MsG0180005400.01 | MsG0380016920.01 | 0.821519 | 3.866467e-53 | 3.152649e-50 |
| MsG0180005400.01 | MsG0380016970.01 | 0.801974 | 6.991213e-49 | 3.384174e-46 |
| MsG0180005400.01 | MsG0380017061.01 | 0.807438 | 5.054107e-50 | 2.815071e-47 |
| MsG0180005400.01 | MsG0480018163.01 | 0.803815 | 2.912020e-49 | 1.477611e-46 |
| MsG0180005400.01 | MsG0480020558.01 | 0.803698 | 3.078841e-49 | 1.557553e-46 |
| MsG0180005400.01 | MsG0480020836.01 | 0.812622 | 3.864528e-51 | 2.469104e-48 |
| MsG0180005400.01 | MsG0480020909.01 | 0.820998 | 5.100132e-53 | 4.099259e-50 |
| MsG0180005400.01 | MsG0480021491.01 | 0.817256 | 3.624010e-52 | 2.625974e-49 |
| MsG0180005400.01 | MsG0480021501.01 | 0.802113 | 6.544598e-49 | 3.179361e-46 |
| MsG0180005400.01 | MsG0480021558.01 | 0.807260 | 5.512544e-50 | 3.056314e-47 |
| MsG0180005400.01 | MsG0480022068.01 | 0.804085 | 2.558296e-49 | 1.307178e-46 |
| MsG0180005400.01 | MsG0480023202.01 | 0.850710 | 1.424165e-60 | 2.814562e-57 |
| MsG0180005400.01 | MsG0480023463.01 | 0.806139 | 9.510870e-50 | 5.123083e-47 |
| MsG0180005400.01 | MsG0480023488.01 | 0.820008 | 8.606801e-53 | 6.729594e-50 |
| MsG0180005400.01 | MsG0580024038.01 | 0.847221 | 1.326416e-59 | 2.341187e-56 |
| MsG0180005400.01 | MsG0580024045.01 | 0.808038 | 3.768577e-50 | 2.132144e-47 |
| MsG0180005400.01 | MsG0580024426.01 | 0.809543 | 1.796835e-50 | 1.057930e-47 |
| MsG0180005400.01 | MsG0580026002.01 | 0.818181 | 2.241079e-52 | 1.665694e-49 |
| MsG0180005400.01 | MsG0580026515.01 | 0.800681 | 1.286061e-48 | 6.025116e-46 |
| MsG0180005400.01 | MsG0580027031.01 | 0.815744 | 7.901253e-52 | 5.493888e-49 |
| MsG0180005400.01 | MsG0580029925.01 | 0.813076 | 3.073158e-51 | 1.987161e-48 |
| MsG0180005400.01 | MsG0680031617.01 | 0.807786 | 4.263737e-50 | 2.396439e-47 |
| MsG0180005400.01 | MsG0680034853.01 | 0.806205 | 9.211548e-50 | 4.970393e-47 |
| MsG0180005400.01 | MsG0680035475.01 | 0.805583 | 1.244827e-49 | 6.610338e-47 |
| MsG0180005400.01 | MsG0780037918.01 | 0.814678 | 1.362942e-51 | 9.204707e-49 |
| MsG0180005400.01 | MsG0780037942.01 | 0.813380 | 2.635367e-51 | 1.718373e-48 |
| MsG0180005400.01 | MsG0780038603.01 | 0.822208 | 2.677982e-53 | 2.226823e-50 |
| MsG0180005400.01 | MsG0780039423.01 | 0.811729 | 6.051177e-51 | 3.774733e-48 |
| MsG0180005400.01 | MsG0780040057.01 | 0.827530 | 1.487272e-54 | 1.439575e-51 |
| MsG0180005400.01 | MsG0880041863.01 | 0.811606 | 6.437651e-51 | 4.002429e-48 |
| MsG0180005400.01 | MsG0880045111.01 | 0.813635 | 2.316038e-51 | 1.520572e-48 |
| MsG0180005400.01 | MsG0880045453.01 | 0.809255 | 2.071018e-50 | 1.210046e-47 |
| MsG0180005400.01 | MsG0880045691.01 | 0.814842 | 1.253695e-51 | 8.504347e-49 |
PPI
| Gene1 | Gene2 | Type |
|---|---|---|
| MsG0180004000.01 | MsG0180005400.01 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0180005400.01.T01 | MTR_1g019170 | 92.530 | 415 | 28 | 1 | 1 | 415 | 1 | 412 | 0.0 | 733 |
| MsG0180005400.01.T01 | MTR_3g029990 | 92.910 | 409 | 26 | 1 | 1 | 409 | 1 | 406 | 0.0 | 733 |
| MsG0180005400.01.T01 | MTR_3g029990 | 92.910 | 409 | 26 | 1 | 1 | 409 | 1 | 406 | 0.0 | 732 |
| MsG0180005400.01.T01 | MTR_1g098960 | 91.443 | 409 | 34 | 1 | 1 | 409 | 1 | 408 | 0.0 | 714 |
| MsG0180005400.01.T01 | MTR_3g448960 | 86.216 | 399 | 29 | 3 | 1 | 399 | 1 | 373 | 0.0 | 642 |
| MsG0180005400.01.T01 | MTR_3g030020 | 78.973 | 409 | 40 | 2 | 1 | 409 | 1 | 363 | 0.0 | 608 |
| MsG0180005400.01.T01 | MTR_7g009010 | 89.831 | 118 | 12 | 0 | 69 | 186 | 25 | 142 | 3.24e-68 | 213 |
| MsG0180005400.01.T01 | MTR_1g072550 | 32.033 | 359 | 224 | 5 | 29 | 368 | 36 | 393 | 1.77e-55 | 189 |
| MsG0180005400.01.T01 | MTR_1g032040 | 33.237 | 346 | 207 | 7 | 14 | 340 | 25 | 365 | 2.07e-54 | 186 |
| MsG0180005400.01.T01 | MTR_1g032380 | 33.237 | 346 | 207 | 7 | 14 | 340 | 25 | 365 | 2.07e-54 | 186 |
| MsG0180005400.01.T01 | MTR_2g017885 | 87.912 | 91 | 11 | 0 | 105 | 195 | 1 | 91 | 1.14e-49 | 164 |
| MsG0180005400.01.T01 | MTR_7g117270 | 30.699 | 329 | 200 | 7 | 29 | 333 | 87 | 411 | 1.99e-38 | 145 |
| MsG0180005400.01.T01 | MTR_3g105530 | 31.195 | 343 | 206 | 10 | 17 | 333 | 25 | 363 | 3.48e-38 | 143 |
| MsG0180005400.01.T01 | MTR_6g033595 | 30.599 | 317 | 189 | 9 | 49 | 337 | 69 | 382 | 4.94e-37 | 141 |
| MsG0180005400.01.T01 | MTR_6g043850 | 30.056 | 356 | 217 | 12 | 8 | 338 | 4 | 352 | 1.76e-35 | 139 |
| MsG0180005400.01.T01 | MTR_7g107280 | 30.579 | 363 | 216 | 8 | 50 | 385 | 54 | 407 | 8.22e-35 | 134 |
| MsG0180005400.01.T01 | MTR_8g089370 | 31.849 | 292 | 180 | 6 | 60 | 341 | 87 | 369 | 1.95e-34 | 132 |
| MsG0180005400.01.T01 | MTR_3g074730 | 36.667 | 270 | 159 | 4 | 100 | 358 | 136 | 404 | 3.35e-33 | 129 |
| MsG0180005400.01.T01 | MTR_2g067960 | 29.874 | 318 | 194 | 9 | 47 | 337 | 32 | 347 | 9.41e-32 | 125 |
| MsG0180005400.01.T01 | MTR_7g088530 | 30.450 | 289 | 165 | 8 | 82 | 346 | 101 | 377 | 2.12e-31 | 124 |
| MsG0180005400.01.T01 | MTR_7g018630 | 27.893 | 337 | 220 | 5 | 50 | 369 | 75 | 405 | 6.98e-29 | 117 |
| MsG0180005400.01.T01 | MTR_4g053720 | 28.614 | 332 | 216 | 7 | 30 | 340 | 26 | 357 | 1.03e-28 | 115 |
| MsG0180005400.01.T01 | MTR_0153s0070 | 30.195 | 308 | 185 | 10 | 17 | 298 | 32 | 335 | 1.26e-27 | 112 |
| MsG0180005400.01.T01 | MTR_3g063230 | 24.427 | 393 | 234 | 10 | 3 | 361 | 30 | 393 | 1.67e-27 | 114 |
| MsG0180005400.01.T01 | MTR_3g083350 | 28.125 | 320 | 191 | 8 | 49 | 336 | 77 | 389 | 6.45e-23 | 101 |
| MsG0180005400.01.T01 | MTR_0153s0070 | 26.531 | 343 | 187 | 11 | 17 | 333 | 2 | 305 | 2.94e-22 | 98.2 |
| MsG0180005400.01.T01 | MTR_3g063230 | 24.599 | 374 | 231 | 11 | 4 | 361 | 31 | 369 | 1.60e-20 | 93.2 |
| MsG0180005400.01.T01 | MTR_8g102038 | 28.729 | 181 | 114 | 5 | 98 | 263 | 54 | 234 | 8.21e-14 | 71.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0180005400.01.T01 | AT2G31290 | 64.611 | 373 | 121 | 3 | 21 | 388 | 21 | 387 | 7.92e-168 | 478 |
| MsG0180005400.01.T01 | AT2G31290 | 64.611 | 373 | 121 | 3 | 21 | 388 | 21 | 387 | 7.92e-168 | 478 |
| MsG0180005400.01.T01 | AT3G63090 | 34.551 | 356 | 209 | 6 | 29 | 363 | 39 | 391 | 2.06e-60 | 202 |
| MsG0180005400.01.T01 | AT5G48040 | 30.423 | 378 | 227 | 6 | 30 | 389 | 41 | 400 | 3.46e-41 | 151 |
| MsG0180005400.01.T01 | AT4G01037 | 30.211 | 331 | 199 | 5 | 29 | 333 | 79 | 403 | 2.38e-39 | 148 |
| MsG0180005400.01.T01 | AT5G21970 | 31.563 | 339 | 203 | 11 | 17 | 332 | 44 | 376 | 6.32e-38 | 143 |
| MsG0180005400.01.T01 | AT5G21970 | 31.563 | 339 | 203 | 11 | 17 | 332 | 44 | 376 | 6.32e-38 | 143 |
| MsG0180005400.01.T01 | AT3G58520 | 30.408 | 319 | 191 | 6 | 50 | 341 | 57 | 371 | 3.68e-37 | 140 |
| MsG0180005400.01.T01 | AT1G79120 | 27.356 | 329 | 207 | 6 | 33 | 333 | 67 | 391 | 5.41e-36 | 137 |
| MsG0180005400.01.T01 | AT1G79120 | 27.356 | 329 | 207 | 6 | 33 | 333 | 67 | 391 | 5.41e-36 | 137 |
| MsG0180005400.01.T01 | AT3G58520 | 31.469 | 286 | 165 | 6 | 83 | 341 | 78 | 359 | 2.42e-35 | 135 |
| MsG0180005400.01.T01 | AT1G06440 | 27.348 | 362 | 231 | 7 | 9 | 342 | 18 | 375 | 1.08e-33 | 130 |
| MsG0180005400.01.T01 | AT5G45790 | 31.118 | 331 | 185 | 10 | 83 | 394 | 39 | 345 | 6.68e-33 | 127 |
| MsG0180005400.01.T01 | AT5G45790 | 30.791 | 354 | 199 | 11 | 63 | 394 | 101 | 430 | 7.54e-33 | 129 |
| MsG0180005400.01.T01 | AT4G08940 | 34.062 | 320 | 193 | 7 | 28 | 332 | 65 | 381 | 1.86e-32 | 127 |
| MsG0180005400.01.T01 | AT4G33495 | 27.848 | 316 | 195 | 9 | 52 | 337 | 70 | 382 | 3.36e-32 | 126 |
| MsG0180005400.01.T01 | AT2G39120 | 31.023 | 303 | 194 | 4 | 50 | 338 | 55 | 356 | 3.80e-32 | 126 |
| MsG0180005400.01.T01 | AT1G71850 | 26.873 | 387 | 242 | 9 | 30 | 393 | 33 | 401 | 4.00e-32 | 127 |
| MsG0180005400.01.T01 | AT4G24320 | 27.273 | 319 | 182 | 9 | 74 | 351 | 71 | 380 | 2.44e-26 | 110 |
| MsG0180005400.01.T01 | AT5G62990 | 28.571 | 364 | 214 | 10 | 14 | 338 | 37 | 393 | 4.19e-25 | 107 |
Find 108 sgRNAs with CRISPR-Local
Find 167 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CAGATTCAAGGGAATCTTTA+AGG | 0.131693 | 1:-91407919 | None:intergenic |
| ATTCGGATTTGTTTCGAATT+AGG | 0.138544 | 1:+91408071 | MsG0180005400.01.T01:CDS |
| GAAGATTTCAATTATGAAAT+TGG | 0.157669 | 1:+91408381 | MsG0180005400.01.T01:CDS |
| TTCAAGGTAAAGCTCTTAAT+TGG | 0.194648 | 1:+91407807 | MsG0180005400.01.T01:CDS |
| TCGGAGGAGAATAATGATTT+TGG | 0.233088 | 1:-91407597 | None:intergenic |
| CTGGAAGCAGGAAGGGTATT+TGG | 0.233503 | 1:-91407834 | None:intergenic |
| GTGGTTGTTAAAGAGAAATT+TGG | 0.234799 | 1:+91408559 | MsG0180005400.01.T01:CDS |
| CAAAGAAAGCATGAGCAATT+TGG | 0.235534 | 1:-91407960 | None:intergenic |
| TGTTACAGGCTTAGAGATTA+AGG | 0.248818 | 1:+91409346 | MsG0180005400.01.T01:intron |
| AATGAAATTAAGAATAGTTT+AGG | 0.257173 | 1:+91408010 | MsG0180005400.01.T01:CDS |
| TGAATTGGGATTTGGTTGTT+AGG | 0.262122 | 1:-91407752 | None:intergenic |
| AGACCAGGATAGTATTTATC+TGG | 0.303240 | 1:+91409424 | MsG0180005400.01.T01:CDS |
| GAGAGTGCTGATTCTAAGTC+TGG | 0.307043 | 1:-91407674 | None:intergenic |
| TTTCCTGATGATTATTTGAT+TGG | 0.317199 | 1:+91408034 | MsG0180005400.01.T01:CDS |
| TTCTTCTGAAGGGTTTGAAT+TGG | 0.321007 | 1:-91407767 | None:intergenic |
| TGGTTGTTAAAGAGAAATTT+GGG | 0.321648 | 1:+91408560 | MsG0180005400.01.T01:CDS |
| ATCACATGAAGGGTAGAAAA+AGG | 0.338755 | 1:+91408686 | MsG0180005400.01.T01:CDS |
| ATGAAATTAAGAATAGTTTA+GGG | 0.339997 | 1:+91408011 | MsG0180005400.01.T01:CDS |
| ATAAAGGTCTTACTTTGAAT+AGG | 0.342215 | 1:+91408653 | MsG0180005400.01.T01:CDS |
| AACATCACATTCACCTTATC+AGG | 0.342273 | 1:-91408430 | None:intergenic |
| GAACGTGATCTTGATGAAAC+TGG | 0.351983 | 1:-91407853 | None:intergenic |
| GATGAGGTTGTGGGAGAAAA+TGG | 0.355247 | 1:+91408739 | MsG0180005400.01.T01:CDS |
| GAAGGGTTTGAATTGGGATT+TGG | 0.355833 | 1:-91407760 | None:intergenic |
| AGTTGTTGTCATTGACTCTT+TGG | 0.357456 | 1:+91408356 | MsG0180005400.01.T01:CDS |
| TGGGATTGTGGCGAAATATT+CGG | 0.360410 | 1:+91408054 | MsG0180005400.01.T01:CDS |
| AAGATTTCAATTATGAAATT+GGG | 0.370455 | 1:+91408382 | MsG0180005400.01.T01:CDS |
| ACTTCCGAAACAGCAAAATC+AGG | 0.376371 | 1:-91408145 | None:intergenic |
| TTCCTGATGATTATTTGATT+GGG | 0.376554 | 1:+91408035 | MsG0180005400.01.T01:CDS |
| TAAAGGTCTTACTTTGAATA+GGG | 0.377600 | 1:+91408654 | MsG0180005400.01.T01:CDS |
| CGTGTTGTTTGCCTTCTAGT+TGG | 0.377717 | 1:+91408209 | MsG0180005400.01.T01:CDS |
| AGATTCAAGGGAATCTTTAA+GGG | 0.380268 | 1:-91407918 | None:intergenic |
| GAGTGGGAGGAGAAGTTCTA+TGG | 0.389317 | 1:+91408099 | MsG0180005400.01.T01:CDS |
| AGGCTTTGGCGATGAAGAAC+GGG | 0.393462 | 1:+91408170 | MsG0180005400.01.T01:CDS |
| GTTACAGGCTTAGAGATTAA+GGG | 0.396129 | 1:+91409347 | MsG0180005400.01.T01:intron |
| GGAGAAGAGGAATGTGGGTT+TGG | 0.397779 | 1:+91408327 | MsG0180005400.01.T01:CDS |
| TTGAGGAGGTTGAAGTGGTT+CGG | 0.398340 | 1:-91407616 | None:intergenic |
| TGTTTCGGAAGTTGAGGCTT+TGG | 0.400756 | 1:+91408156 | MsG0180005400.01.T01:CDS |
| GTTTCGCCTTATTCTGATCC+GGG | 0.406148 | 1:+91408277 | MsG0180005400.01.T01:CDS |
| TCTATGTTTCTAATAAGTAT+AGG | 0.410221 | 1:+91408473 | MsG0180005400.01.T01:CDS |
| TCTTCTGAAGGGTTTGAATT+GGG | 0.412053 | 1:-91407766 | None:intergenic |
| TGTTTCGCCTTATTCTGATC+CGG | 0.412087 | 1:+91408276 | MsG0180005400.01.T01:CDS |
| ATCGAAAAGAAGAGAAATAA+AGG | 0.413059 | 1:+91408637 | MsG0180005400.01.T01:CDS |
| TACTTAGAGAAGGGTATGTT+GGG | 0.423576 | 1:+91408509 | MsG0180005400.01.T01:CDS |
| TGGGTCTCAATTAGTTGATA+AGG | 0.437882 | 1:+91408528 | MsG0180005400.01.T01:CDS |
| TTCAAAACGCTCGATCTTCA+AGG | 0.439024 | 1:+91407791 | MsG0180005400.01.T01:CDS |
| TATTAACAAGTCGCCGCCTC+TGG | 0.440474 | 1:-91408615 | None:intergenic |
| GGGGTTGGTGGAAGGGTCTA+AGG | 0.440553 | 1:+91408300 | MsG0180005400.01.T01:CDS |
| GAATTGGGATTTGGTTGTTA+GGG | 0.441534 | 1:-91407751 | None:intergenic |
| AACGATTTCACCCAACTAGA+AGG | 0.446056 | 1:-91408220 | None:intergenic |
| ATCCCAATCAAATAATCATC+AGG | 0.448191 | 1:-91408037 | None:intergenic |
| CTATGTAGACGCAAATCAAA+TGG | 0.454728 | 1:-91409453 | None:intergenic |
| GAAATTTGGGGAGATTATGC+AGG | 0.454766 | 1:+91408573 | MsG0180005400.01.T01:CDS |
| GTGTTGTTTGCCTTCTAGTT+GGG | 0.465704 | 1:+91408210 | MsG0180005400.01.T01:CDS |
| GGTGGAAGGGTCTAAGGAAA+TGG | 0.466765 | 1:+91408306 | MsG0180005400.01.T01:CDS |
| GGCGATGAAGAACGGGGTTG+AGG | 0.467191 | 1:+91408177 | MsG0180005400.01.T01:CDS |
| TACTTTGAATAGGGTGGATG+AGG | 0.468471 | 1:+91408663 | MsG0180005400.01.T01:CDS |
| TGGTGGTTGAGTTGATGAAA+TGG | 0.473170 | 1:+91408119 | MsG0180005400.01.T01:CDS |
| TGATTATTTGATTGGGATTG+TGG | 0.475721 | 1:+91408042 | MsG0180005400.01.T01:CDS |
| TCTTCTTACTAAACGCATGA+TGG | 0.484824 | 1:+91407874 | MsG0180005400.01.T01:CDS |
| GTGATGTTGCTTAAGCATCC+TGG | 0.501167 | 1:+91408445 | MsG0180005400.01.T01:CDS |
| TTACTTAGAGAAGGGTATGT+TGG | 0.502755 | 1:+91408508 | MsG0180005400.01.T01:CDS |
| TCAGAATAAGGCGAAACATA+AGG | 0.503310 | 1:-91408271 | None:intergenic |
| GTCGAACGAAAACAGATTCA+AGG | 0.503440 | 1:-91407931 | None:intergenic |
| TGATGAAGATGATGAGGTTG+TGG | 0.509984 | 1:+91408729 | MsG0180005400.01.T01:CDS |
| TTCTCTTTAACAACCACAAG+AGG | 0.511752 | 1:-91408553 | None:intergenic |
| GGAAATGGAGAAGAGGAATG+TGG | 0.528792 | 1:+91408321 | MsG0180005400.01.T01:CDS |
| TTCTAGTTGGGTGAAATCGT+TGG | 0.533806 | 1:+91408222 | MsG0180005400.01.T01:CDS |
| GGATTTGGTTGTTAGGGTAA+CGG | 0.533975 | 1:-91407745 | None:intergenic |
| GAGGCTTTGGCGATGAAGAA+CGG | 0.534571 | 1:+91408169 | MsG0180005400.01.T01:CDS |
| AGGAGGTTGAAGTGGTTCGG+AGG | 0.535473 | 1:-91407613 | None:intergenic |
| CCTATGTTATGCTTTAGACC+AGG | 0.546571 | 1:+91409409 | MsG0180005400.01.T01:CDS |
| GAGATTTCGCGAATTTGAGT+TGG | 0.551897 | 1:+91408246 | MsG0180005400.01.T01:CDS |
| CTTCCGAAACAGCAAAATCA+GGG | 0.553057 | 1:-91408144 | None:intergenic |
| ATCTTGATGAAACTGGAAGC+AGG | 0.556535 | 1:-91407846 | None:intergenic |
| TTGGGGAGATTATGCAGGAA+GGG | 0.557741 | 1:+91408578 | MsG0180005400.01.T01:CDS |
| CGCCTTATTCTGATCCGGGG+GGG | 0.558695 | 1:+91408281 | MsG0180005400.01.T01:CDS |
| GATGAAGATGATGAGGTTGT+GGG | 0.558960 | 1:+91408730 | MsG0180005400.01.T01:CDS |
| TCACCAGATAAATACTATCC+TGG | 0.559332 | 1:-91409427 | None:intergenic |
| TTGGTTTGATGATGGAACAT+TGG | 0.565193 | 1:-91407578 | None:intergenic |
| AGGTCTTACTTTGAATAGGG+TGG | 0.566557 | 1:+91408657 | MsG0180005400.01.T01:CDS |
| TTCGAATTAGGAATGAGAGT+GGG | 0.566767 | 1:+91408083 | MsG0180005400.01.T01:CDS |
| TTTCGAATTAGGAATGAGAG+TGG | 0.567675 | 1:+91408082 | MsG0180005400.01.T01:CDS |
| GATGAAACTGGAAGCAGGAA+GGG | 0.569228 | 1:-91407841 | None:intergenic |
| AGTTGATAAGGATCCTCTTG+TGG | 0.570094 | 1:+91408540 | MsG0180005400.01.T01:CDS |
| GAAATGGAGAAGAGGAATGT+GGG | 0.571047 | 1:+91408322 | MsG0180005400.01.T01:CDS |
| GGTCTAAGGAAATGGAGAAG+AGG | 0.574044 | 1:+91408314 | MsG0180005400.01.T01:CDS |
| TTAGAAACATAGAAAATCCC+AGG | 0.574471 | 1:-91408463 | None:intergenic |
| TGATGTTGCTTAAGCATCCT+GGG | 0.575518 | 1:+91408446 | MsG0180005400.01.T01:CDS |
| TTACAGGCTTAGAGATTAAG+GGG | 0.576831 | 1:+91409348 | MsG0180005400.01.T01:intron |
| GGTGGATGAGGATCACATGA+AGG | 0.577829 | 1:+91408675 | MsG0180005400.01.T01:CDS |
| CCTGGTCTAAAGCATAACAT+AGG | 0.586171 | 1:-91409409 | None:intergenic |
| GAATTAGGAATGAGAGTGGG+AGG | 0.586831 | 1:+91408086 | MsG0180005400.01.T01:CDS |
| TGGGAGGAGAAGTTCTATGG+TGG | 0.588305 | 1:+91408102 | MsG0180005400.01.T01:CDS |
| TCGAACGAAAACAGATTCAA+GGG | 0.591034 | 1:-91407930 | None:intergenic |
| TGATGAAACTGGAAGCAGGA+AGG | 0.592019 | 1:-91407842 | None:intergenic |
| TTTCGCCTTATTCTGATCCG+GGG | 0.596558 | 1:+91408278 | MsG0180005400.01.T01:CDS |
| CACTCTCACGCAACAAACGT+TGG | 0.598301 | 1:+91407690 | MsG0180005400.01.T01:CDS |
| AGAGTGCTGATTCTAAGTCT+GGG | 0.602097 | 1:-91407673 | None:intergenic |
| TTCGCCTTATTCTGATCCGG+GGG | 0.608336 | 1:+91408279 | MsG0180005400.01.T01:CDS |
| GTGGATGAGGATCACATGAA+GGG | 0.616541 | 1:+91408676 | MsG0180005400.01.T01:CDS |
| TTTGGGGAGATTATGCAGGA+AGG | 0.630590 | 1:+91408577 | MsG0180005400.01.T01:CDS |
| TTTGGTTGTTAGGGTAACGG+AGG | 0.634763 | 1:-91407742 | None:intergenic |
| TTCATGAGTATAACCAGAGG+CGG | 0.650650 | 1:+91408602 | MsG0180005400.01.T01:CDS |
| GGCTTTGGCGATGAAGAACG+GGG | 0.651640 | 1:+91408171 | MsG0180005400.01.T01:CDS |
| AGTGTCTGATGAAGATGATG+AGG | 0.666168 | 1:+91408723 | MsG0180005400.01.T01:CDS |
| TCGCCTTATTCTGATCCGGG+GGG | 0.687281 | 1:+91408280 | MsG0180005400.01.T01:CDS |
| GGCTTCATGAGTATAACCAG+AGG | 0.709215 | 1:+91408599 | MsG0180005400.01.T01:CDS |
| GGTTGTTAAAGAGAAATTTG+GGG | 0.712500 | 1:+91408561 | MsG0180005400.01.T01:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAAAATAACTAAACATTGA+AGG | - | Chr1:91409115-91409134 | None:intergenic | 15.0% |
| !! | AAAAATAACTAAACATTGAA+GGG | - | Chr1:91409114-91409133 | None:intergenic | 15.0% |
| !! | AAAAATCAAACAAACAAAAT+TGG | + | Chr1:91408893-91408912 | MsG0180005400.01.T01:intron | 15.0% |
| !! | AAGATTTCAATTATGAAATT+GGG | + | Chr1:91408382-91408401 | MsG0180005400.01.T01:CDS | 15.0% |
| !! | AATGAAATTAAGAATAGTTT+AGG | + | Chr1:91408010-91408029 | MsG0180005400.01.T01:CDS | 15.0% |
| !! | ATGAAATTAAGAATAGTTTA+GGG | + | Chr1:91408011-91408030 | MsG0180005400.01.T01:CDS | 15.0% |
| !! | TTACATAATAATTTAGATAG+TGG | + | Chr1:91409172-91409191 | MsG0180005400.01.T01:intron | 15.0% |
| !! | GAAGATTTCAATTATGAAAT+TGG | + | Chr1:91408381-91408400 | MsG0180005400.01.T01:CDS | 20.0% |
| !!! | TCTATGTTTCTAATAAGTAT+AGG | + | Chr1:91408473-91408492 | MsG0180005400.01.T01:CDS | 20.0% |
| ! | ACAAAATTGGACAGTTTAAT+TGG | + | Chr1:91408906-91408925 | MsG0180005400.01.T01:intron | 25.0% |
| ! | ATAAAGGTCTTACTTTGAAT+AGG | + | Chr1:91408653-91408672 | MsG0180005400.01.T01:CDS | 25.0% |
| ! | ATCGAAAAGAAGAGAAATAA+AGG | + | Chr1:91408637-91408656 | MsG0180005400.01.T01:CDS | 25.0% |
| ! | ATTCAATTTCAAGGAAAGAT+AGG | - | Chr1:91409217-91409236 | None:intergenic | 25.0% |
| ! | TAAAGGTCTTACTTTGAATA+GGG | + | Chr1:91408654-91408673 | MsG0180005400.01.T01:CDS | 25.0% |
| ! | TCTTTCCTTGAAATTGAATT+AGG | + | Chr1:91409218-91409237 | MsG0180005400.01.T01:intron | 25.0% |
| ! | TGGTTGTTAAAGAGAAATTT+GGG | + | Chr1:91408560-91408579 | MsG0180005400.01.T01:CDS | 25.0% |
| ! | TTCCTGATGATTATTTGATT+GGG | + | Chr1:91408035-91408054 | MsG0180005400.01.T01:CDS | 25.0% |
| ! | TTTCCTGATGATTATTTGAT+TGG | + | Chr1:91408034-91408053 | MsG0180005400.01.T01:CDS | 25.0% |
| !! | AAAACCTTTTTCTTTCTTCA+GGG | - | Chr1:91408789-91408808 | None:intergenic | 25.0% |
| !! | ATACTGTTTTACTTAGAGAA+GGG | + | Chr1:91408500-91408519 | MsG0180005400.01.T01:CDS | 25.0% |
| !! | TAAAACCTTTTTCTTTCTTC+AGG | - | Chr1:91408790-91408809 | None:intergenic | 25.0% |
| !! | TATACTGTTTTACTTAGAGA+AGG | + | Chr1:91408499-91408518 | MsG0180005400.01.T01:CDS | 25.0% |
| !!! | AAAGTTCTTTTTGATGATGA+TGG | + | Chr1:91408811-91408830 | MsG0180005400.01.T01:intron | 25.0% |
| !!! | GAAATTGGGTCATTTTAAAA+GGG | + | Chr1:91408396-91408415 | MsG0180005400.01.T01:CDS | 25.0% |
| !!! | TAATGATTTTGGTTTGATGA+TGG | - | Chr1:91407589-91407608 | None:intergenic | 25.0% |
| !!! | TGAAATTGGGTCATTTTAAA+AGG | + | Chr1:91408395-91408414 | MsG0180005400.01.T01:CDS | 25.0% |
| ACAAGCCTAATTCAATTTCA+AGG | - | Chr1:91409226-91409245 | None:intergenic | 30.0% | |
| AGATTCAAGGGAATCTTTAA+GGG | - | Chr1:91407921-91407940 | None:intergenic | 30.0% | |
| ATCCCAATCAAATAATCATC+AGG | - | Chr1:91408040-91408059 | None:intergenic | 30.0% | |
| CAAAAAGACACTATTGTCTA+TGG | + | Chr1:91407636-91407655 | MsG0180005400.01.T01:CDS | 30.0% | |
| GGTTGTTAAAGAGAAATTTG+GGG | + | Chr1:91408561-91408580 | MsG0180005400.01.T01:CDS | 30.0% | |
| GTGGTTGTTAAAGAGAAATT+TGG | + | Chr1:91408559-91408578 | MsG0180005400.01.T01:CDS | 30.0% | |
| TACTCAAAAATCATCACAGT+AGG | - | Chr1:91409297-91409316 | None:intergenic | 30.0% | |
| TAGAAAAAGGAGAAGAAACA+GGG | + | Chr1:91408699-91408718 | MsG0180005400.01.T01:CDS | 30.0% | |
| TGATTATTTGATTGGGATTG+TGG | + | Chr1:91408042-91408061 | MsG0180005400.01.T01:CDS | 30.0% | |
| TTAGAAACATAGAAAATCCC+AGG | - | Chr1:91408466-91408485 | None:intergenic | 30.0% | |
| TTCAAGGTAAAGCTCTTAAT+TGG | + | Chr1:91407807-91407826 | MsG0180005400.01.T01:CDS | 30.0% | |
| ! | ATTCGGATTTGTTTCGAATT+AGG | + | Chr1:91408071-91408090 | MsG0180005400.01.T01:CDS | 30.0% |
| ! | GATTTTGTCCCATTAAAATG+CGG | + | Chr1:91408983-91409002 | MsG0180005400.01.T01:intron | 30.0% |
| ! | TAGACAATAGTGTCTTTTTG+AGG | - | Chr1:91407636-91407655 | None:intergenic | 30.0% |
| !! | AGATTCAACCGCATTTTAAT+GGG | - | Chr1:91408994-91409013 | None:intergenic | 30.0% |
| !! | CGTTTTGAATTTCTTCTGAA+GGG | - | Chr1:91407780-91407799 | None:intergenic | 30.0% |
| !! | GGAGGATAATGTTTTTGATT+TGG | - | Chr1:91407727-91407746 | None:intergenic | 30.0% |
| !! | GTTAATTTGTTCTCTGTTAC+AGG | + | Chr1:91409332-91409351 | MsG0180005400.01.T01:intron | 30.0% |
| !!! | TGTTTTGATCAGATTCAACA+GGG | - | Chr1:91409081-91409100 | None:intergenic | 30.0% |
| !!! | TTGTTTTGATCAGATTCAAC+AGG | - | Chr1:91409082-91409101 | None:intergenic | 30.0% |
| AAAATGGTAATAAGCTGGGA+GGG | + | Chr1:91408755-91408774 | MsG0180005400.01.T01:intron | 35.0% | |
| AACATCACATTCACCTTATC+AGG | - | Chr1:91408433-91408452 | None:intergenic | 35.0% | |
| AGACCAGGATAGTATTTATC+TGG | + | Chr1:91409424-91409443 | MsG0180005400.01.T01:CDS | 35.0% | |
| AGTCTTCAAACTTCCATTCT+AGG | + | Chr1:91409271-91409290 | MsG0180005400.01.T01:intron | 35.0% | |
| ATCACATGAAGGGTAGAAAA+AGG | + | Chr1:91408686-91408705 | MsG0180005400.01.T01:CDS | 35.0% | |
| CAGATTCAAGGGAATCTTTA+AGG | - | Chr1:91407922-91407941 | None:intergenic | 35.0% | |
| GGAGAAAATGGTAATAAGCT+GGG | + | Chr1:91408751-91408770 | MsG0180005400.01.T01:intron | 35.0% | |
| GTAGAAAAAGGAGAAGAAAC+AGG | + | Chr1:91408698-91408717 | MsG0180005400.01.T01:CDS | 35.0% | |
| GTTACAGGCTTAGAGATTAA+GGG | + | Chr1:91409347-91409366 | MsG0180005400.01.T01:intron | 35.0% | |
| TCACCAGATAAATACTATCC+TGG | - | Chr1:91409430-91409449 | None:intergenic | 35.0% | |
| TCAGAATAAGGCGAAACATA+AGG | - | Chr1:91408274-91408293 | None:intergenic | 35.0% | |
| TCGAACGAAAACAGATTCAA+GGG | - | Chr1:91407933-91407952 | None:intergenic | 35.0% | |
| TCTTCTTACTAAACGCATGA+TGG | + | Chr1:91407874-91407893 | MsG0180005400.01.T01:CDS | 35.0% | |
| TGTTACAGGCTTAGAGATTA+AGG | + | Chr1:91409346-91409365 | MsG0180005400.01.T01:intron | 35.0% | |
| TTACAGGCTTAGAGATTAAG+GGG | + | Chr1:91409348-91409367 | MsG0180005400.01.T01:intron | 35.0% | |
| TTCGAATTAGGAATGAGAGT+GGG | + | Chr1:91408083-91408102 | MsG0180005400.01.T01:CDS | 35.0% | |
| TTCTCTTTAACAACCACAAG+AGG | - | Chr1:91408556-91408575 | None:intergenic | 35.0% | |
| TTGACCCTGAAGAAAGAAAA+AGG | + | Chr1:91408782-91408801 | MsG0180005400.01.T01:intron | 35.0% | |
| TTTCGAATTAGGAATGAGAG+TGG | + | Chr1:91408082-91408101 | MsG0180005400.01.T01:CDS | 35.0% | |
| ! | AATGAAGATTTGCTTAGCCT+AGG | + | Chr1:91408840-91408859 | MsG0180005400.01.T01:intron | 35.0% |
| ! | CAAAGAAAGCATGAGCAATT+TGG | - | Chr1:91407963-91407982 | None:intergenic | 35.0% |
| ! | CAGATTCAACCGCATTTTAA+TGG | - | Chr1:91408995-91409014 | None:intergenic | 35.0% |
| ! | GAATTGGGATTTGGTTGTTA+GGG | - | Chr1:91407754-91407773 | None:intergenic | 35.0% |
| ! | TACTTAGAGAAGGGTATGTT+GGG | + | Chr1:91408509-91408528 | MsG0180005400.01.T01:CDS | 35.0% |
| ! | TCGGAGGAGAATAATGATTT+TGG | - | Chr1:91407600-91407619 | None:intergenic | 35.0% |
| ! | TCTTCTGAAGGGTTTGAATT+GGG | - | Chr1:91407769-91407788 | None:intergenic | 35.0% |
| ! | TGAATTGGGATTTGGTTGTT+AGG | - | Chr1:91407755-91407774 | None:intergenic | 35.0% |
| ! | TGGGTCTCAATTAGTTGATA+AGG | + | Chr1:91408528-91408547 | MsG0180005400.01.T01:CDS | 35.0% |
| ! | TTACTTAGAGAAGGGTATGT+TGG | + | Chr1:91408508-91408527 | MsG0180005400.01.T01:CDS | 35.0% |
| ! | TTCTTCTGAAGGGTTTGAAT+TGG | - | Chr1:91407770-91407789 | None:intergenic | 35.0% |
| !! | ACAATAGTGTCTTTTTGAGG+AGG | - | Chr1:91407633-91407652 | None:intergenic | 35.0% |
| !! | AGTTGTTGTCATTGACTCTT+TGG | + | Chr1:91408356-91408375 | MsG0180005400.01.T01:CDS | 35.0% |
| !! | GCGTTTTGAATTTCTTCTGA+AGG | - | Chr1:91407781-91407800 | None:intergenic | 35.0% |
| !!! | AACCTTGAGCTGTTTTTCAT+TGG | + | Chr1:91408932-91408951 | MsG0180005400.01.T01:intron | 35.0% |
| !!! | AGCTGTTTTTCATTGGAGTT+CGG | + | Chr1:91408939-91408958 | MsG0180005400.01.T01:intron | 35.0% |
| !!! | CTGTGATGATTTTTGAGTAC+TGG | + | Chr1:91409298-91409317 | MsG0180005400.01.T01:intron | 35.0% |
| !!! | GGAGTTTTTTTTGCCTGATA+AGG | + | Chr1:91408417-91408436 | MsG0180005400.01.T01:CDS | 35.0% |
| !!! | TCAATGTTCGGTTGTTTTTG+CGG | + | Chr1:91409038-91409057 | MsG0180005400.01.T01:intron | 35.0% |
| AACGATTTCACCCAACTAGA+AGG | - | Chr1:91408223-91408242 | None:intergenic | 40.0% | |
| ACTTCCGAAACAGCAAAATC+AGG | - | Chr1:91408148-91408167 | None:intergenic | 40.0% | |
| AGGTCTTACTTTGAATAGGG+TGG | + | Chr1:91408657-91408676 | MsG0180005400.01.T01:CDS | 40.0% | |
| AGTGTCTGATGAAGATGATG+AGG | + | Chr1:91408723-91408742 | MsG0180005400.01.T01:CDS | 40.0% | |
| ATCTTGATGAAACTGGAAGC+AGG | - | Chr1:91407849-91407868 | None:intergenic | 40.0% | |
| CTCCAATGAAAAACAGCTCA+AGG | - | Chr1:91408937-91408956 | None:intergenic | 40.0% | |
| CTTCCGAAACAGCAAAATCA+GGG | - | Chr1:91408147-91408166 | None:intergenic | 40.0% | |
| GAAAATGGTAATAAGCTGGG+AGG | + | Chr1:91408754-91408773 | MsG0180005400.01.T01:intron | 40.0% | |
| GAAATGGAGAAGAGGAATGT+GGG | + | Chr1:91408322-91408341 | MsG0180005400.01.T01:CDS | 40.0% | |
| GAAATTTGGGGAGATTATGC+AGG | + | Chr1:91408573-91408592 | MsG0180005400.01.T01:CDS | 40.0% | |
| GAACGTGATCTTGATGAAAC+TGG | - | Chr1:91407856-91407875 | None:intergenic | 40.0% | |
| GAAGGGTTTGAATTGGGATT+TGG | - | Chr1:91407763-91407782 | None:intergenic | 40.0% | |
| GAGATTTCGCGAATTTGAGT+TGG | + | Chr1:91408246-91408265 | MsG0180005400.01.T01:CDS | 40.0% | |
| GATGAAGATGATGAGGTTGT+GGG | + | Chr1:91408730-91408749 | MsG0180005400.01.T01:CDS | 40.0% | |
| GGGAGAAAATGGTAATAAGC+TGG | + | Chr1:91408750-91408769 | MsG0180005400.01.T01:intron | 40.0% | |
| GTCGAACGAAAACAGATTCA+AGG | - | Chr1:91407934-91407953 | None:intergenic | 40.0% | |
| TACTTTGAATAGGGTGGATG+AGG | + | Chr1:91408663-91408682 | MsG0180005400.01.T01:CDS | 40.0% | |
| TGATGAAGATGATGAGGTTG+TGG | + | Chr1:91408729-91408748 | MsG0180005400.01.T01:CDS | 40.0% | |
| TGGGATTGTGGCGAAATATT+CGG | + | Chr1:91408054-91408073 | MsG0180005400.01.T01:CDS | 40.0% | |
| TTCAAAACGCTCGATCTTCA+AGG | + | Chr1:91407791-91407810 | MsG0180005400.01.T01:CDS | 40.0% | |
| TTCATGAGTATAACCAGAGG+CGG | + | Chr1:91408602-91408621 | MsG0180005400.01.T01:CDS | 40.0% | |
| ! | CCTATGTTATGCTTTAGACC+AGG | + | Chr1:91409409-91409428 | MsG0180005400.01.T01:CDS | 40.0% |
| ! | CCTGGTCTAAAGCATAACAT+AGG | - | Chr1:91409412-91409431 | None:intergenic | 40.0% |
| ! | GGATTTGGTTGTTAGGGTAA+CGG | - | Chr1:91407748-91407767 | None:intergenic | 40.0% |
| ! | TGATGTTGCTTAAGCATCCT+GGG | + | Chr1:91408446-91408465 | MsG0180005400.01.T01:CDS | 40.0% |
| ! | TGTTTCGCCTTATTCTGATC+CGG | + | Chr1:91408276-91408295 | MsG0180005400.01.T01:CDS | 40.0% |
| ! | TTCTAGTTGGGTGAAATCGT+TGG | + | Chr1:91408222-91408241 | MsG0180005400.01.T01:CDS | 40.0% |
| !! | AGAGTGCTGATTCTAAGTCT+GGG | - | Chr1:91407676-91407695 | None:intergenic | 40.0% |
| !! | AGTTGATAAGGATCCTCTTG+TGG | + | Chr1:91408540-91408559 | MsG0180005400.01.T01:CDS | 40.0% |
| !! | GTGTTGTTTGCCTTCTAGTT+GGG | + | Chr1:91408210-91408229 | MsG0180005400.01.T01:CDS | 40.0% |
| !! | TCTTTTTGAGGAGGTTGAAG+TGG | - | Chr1:91407624-91407643 | None:intergenic | 40.0% |
| !! | TGGTGGTTGAGTTGATGAAA+TGG | + | Chr1:91408119-91408138 | MsG0180005400.01.T01:CDS | 40.0% |
| !!! | GAACCCTGATTTTGCTGTTT+CGG | + | Chr1:91408141-91408160 | MsG0180005400.01.T01:CDS | 40.0% |
| !!! | TTTTGCTGTTTCGGAAGTTG+AGG | + | Chr1:91408150-91408169 | MsG0180005400.01.T01:CDS | 40.0% |
| AGTCTCGTCGCTTCAATGTT+CGG | + | Chr1:91409026-91409045 | MsG0180005400.01.T01:intron | 45.0% | |
| ATTTGCTTAGCCTAGGACCT+AGG | + | Chr1:91408847-91408866 | MsG0180005400.01.T01:intron | 45.0% | |
| GAATTAGGAATGAGAGTGGG+AGG | + | Chr1:91408086-91408105 | MsG0180005400.01.T01:CDS | 45.0% | |
| GATGAAACTGGAAGCAGGAA+GGG | - | Chr1:91407844-91407863 | None:intergenic | 45.0% | |
| GATGAGGTTGTGGGAGAAAA+TGG | + | Chr1:91408739-91408758 | MsG0180005400.01.T01:CDS | 45.0% | |
| GGAAATGGAGAAGAGGAATG+TGG | + | Chr1:91408321-91408340 | MsG0180005400.01.T01:CDS | 45.0% | |
| GGCTTCATGAGTATAACCAG+AGG | + | Chr1:91408599-91408618 | MsG0180005400.01.T01:CDS | 45.0% | |
| GGTCTAAGGAAATGGAGAAG+AGG | + | Chr1:91408314-91408333 | MsG0180005400.01.T01:CDS | 45.0% | |
| GTGGATGAGGATCACATGAA+GGG | + | Chr1:91408676-91408695 | MsG0180005400.01.T01:CDS | 45.0% | |
| TCATCACAGTAGGCCTAGAA+TGG | - | Chr1:91409287-91409306 | None:intergenic | 45.0% | |
| TGATGAAACTGGAAGCAGGA+AGG | - | Chr1:91407845-91407864 | None:intergenic | 45.0% | |
| TGTTTCGGAAGTTGAGGCTT+TGG | + | Chr1:91408156-91408175 | MsG0180005400.01.T01:CDS | 45.0% | |
| TTGAGGAGGTTGAAGTGGTT+CGG | - | Chr1:91407619-91407638 | None:intergenic | 45.0% | |
| TTGGGGAGATTATGCAGGAA+GGG | + | Chr1:91408578-91408597 | MsG0180005400.01.T01:CDS | 45.0% | |
| TTTGGGGAGATTATGCAGGA+AGG | + | Chr1:91408577-91408596 | MsG0180005400.01.T01:CDS | 45.0% | |
| ! | AAGCGACGAGACTTCTGTTT+TGG | - | Chr1:91409019-91409038 | None:intergenic | 45.0% |
| ! | GTGATGTTGCTTAAGCATCC+TGG | + | Chr1:91408445-91408464 | MsG0180005400.01.T01:CDS | 45.0% |
| ! | GTTTCGCCTTATTCTGATCC+GGG | + | Chr1:91408277-91408296 | MsG0180005400.01.T01:CDS | 45.0% |
| ! | TTTCGCCTTATTCTGATCCG+GGG | + | Chr1:91408278-91408297 | MsG0180005400.01.T01:CDS | 45.0% |
| ! | TTTGGTTGTTAGGGTAACGG+AGG | - | Chr1:91407745-91407764 | None:intergenic | 45.0% |
| !! | CGTGTTGTTTGCCTTCTAGT+TGG | + | Chr1:91408209-91408228 | MsG0180005400.01.T01:CDS | 45.0% |
| !! | GAGAGTGCTGATTCTAAGTC+TGG | - | Chr1:91407677-91407696 | None:intergenic | 45.0% |
| CACTCTCACGCAACAAACGT+TGG | + | Chr1:91407690-91407709 | MsG0180005400.01.T01:CDS | 50.0% | |
| GAGTGGGAGGAGAAGTTCTA+TGG | + | Chr1:91408099-91408118 | MsG0180005400.01.T01:CDS | 50.0% | |
| GGAGAAGAGGAATGTGGGTT+TGG | + | Chr1:91408327-91408346 | MsG0180005400.01.T01:CDS | 50.0% | |
| GGTGGAAGGGTCTAAGGAAA+TGG | + | Chr1:91408306-91408325 | MsG0180005400.01.T01:CDS | 50.0% | |
| GGTGGATGAGGATCACATGA+AGG | + | Chr1:91408675-91408694 | MsG0180005400.01.T01:CDS | 50.0% | |
| TATTAACAAGTCGCCGCCTC+TGG | - | Chr1:91408618-91408637 | None:intergenic | 50.0% | |
| TGGGAGGAGAAGTTCTATGG+TGG | + | Chr1:91408102-91408121 | MsG0180005400.01.T01:CDS | 50.0% | |
| ! | AGGCTTTGGCGATGAAGAAC+GGG | + | Chr1:91408170-91408189 | MsG0180005400.01.T01:CDS | 50.0% |
| ! | GAGGCTTTGGCGATGAAGAA+CGG | + | Chr1:91408169-91408188 | MsG0180005400.01.T01:CDS | 50.0% |
| ! | TTCGCCTTATTCTGATCCGG+GGG | + | Chr1:91408279-91408298 | MsG0180005400.01.T01:CDS | 50.0% |
| !! | CTGGAAGCAGGAAGGGTATT+TGG | - | Chr1:91407837-91407856 | None:intergenic | 50.0% |
| AACCCCCCCGGATCAGAATA+AGG | - | Chr1:91408286-91408305 | None:intergenic | 55.0% | |
| ATGCACCACACCTAGGTCCT+AGG | - | Chr1:91408860-91408879 | None:intergenic | 55.0% | |
| CTGTTCCATGCACCACACCT+AGG | - | Chr1:91408867-91408886 | None:intergenic | 55.0% | |
| CTTAGCCTAGGACCTAGGTG+TGG | + | Chr1:91408852-91408871 | MsG0180005400.01.T01:intron | 55.0% | |
| TAGGACCTAGGTGTGGTGCA+TGG | + | Chr1:91408859-91408878 | MsG0180005400.01.T01:intron | 55.0% | |
| TTATTCTGATCCGGGGGGGT+TGG | + | Chr1:91408285-91408304 | MsG0180005400.01.T01:CDS | 55.0% | |
| ! | AGGAGGTTGAAGTGGTTCGG+AGG | - | Chr1:91407616-91407635 | None:intergenic | 55.0% |
| ! | GGCTTTGGCGATGAAGAACG+GGG | + | Chr1:91408171-91408190 | MsG0180005400.01.T01:CDS | 55.0% |
| ! | TCGCCTTATTCTGATCCGGG+GGG | + | Chr1:91408280-91408299 | MsG0180005400.01.T01:CDS | 55.0% |
| GGCGATGAAGAACGGGGTTG+AGG | + | Chr1:91408177-91408196 | MsG0180005400.01.T01:CDS | 60.0% | |
| ! | CGCCTTATTCTGATCCGGGG+GGG | + | Chr1:91408281-91408300 | MsG0180005400.01.T01:CDS | 60.0% |
| !! | GGGGTTGGTGGAAGGGTCTA+AGG | + | Chr1:91408300-91408319 | MsG0180005400.01.T01:CDS | 60.0% |
| TTCTGATCCGGGGGGGTTGG+TGG | + | Chr1:91408288-91408307 | MsG0180005400.01.T01:CDS | 65.0% | |
| !! | ATCCGGGGGGGTTGGTGGAA+GGG | + | Chr1:91408293-91408312 | MsG0180005400.01.T01:CDS | 65.0% |
| GACCCTTCCACCAACCCCCC+CGG | - | Chr1:91408298-91408317 | None:intergenic | 70.0% | |
| !! | GATCCGGGGGGGTTGGTGGA+AGG | + | Chr1:91408292-91408311 | MsG0180005400.01.T01:CDS | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| Chr1 | gene | 91407581 | 91409460 | 91407581 | ID=MsG0180005400.01;Name=MsG0180005400.01 |
| Chr1 | mRNA | 91407581 | 91409460 | 91407581 | ID=MsG0180005400.01.T01;Parent=MsG0180005400.01;Name=MsG0180005400.01.T01;_AED=0.47;_eAED=0.47;_QI=0|0|0|0.5|1|1|2|0|428 |
| Chr1 | exon | 91407581 | 91408760 | 91407581 | ID=MsG0180005400.01.T01:exon:17663;Parent=MsG0180005400.01.T01 |
| Chr1 | exon | 91409354 | 91409460 | 91409354 | ID=MsG0180005400.01.T01:exon:17664;Parent=MsG0180005400.01.T01 |
| Chr1 | CDS | 91407581 | 91408760 | 91407581 | ID=MsG0180005400.01.T01:cds;Parent=MsG0180005400.01.T01 |
| Chr1 | CDS | 91409354 | 91409460 | 91409354 | ID=MsG0180005400.01.T01:cds;Parent=MsG0180005400.01.T01 |
| Gene Sequence |
| Protein sequence |
