AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0180004038.01

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0180004038.01.T02 MTR_3g106480 82.201 309 32 1 1 286 170 478 2.33e-179 503
MsG0180004038.01.T02 MTR_3g106420 82.201 309 32 1 1 286 172 480 5.21e-170 479
MsG0180004038.01.T02 MTR_1g115145 83.871 310 20 5 1 286 170 473 1.04e-169 478
MsG0180004038.01.T02 MTR_1g073400 85.761 309 17 2 1 286 170 474 2.33e-166 470
MsG0180004038.01.T02 MTR_3g106485 83.172 309 25 4 1 286 170 474 7.51e-166 469
MsG0180004038.01.T02 MTR_1g071130 78.317 309 15 3 1 286 170 449 1.15e-164 465
MsG0180004038.01.T02 MTR_1g083190 79.288 309 33 2 1 286 172 472 1.73e-159 452
MsG0180004038.01.T02 MTR_3g106430 80.968 310 32 3 1 287 170 475 8.86e-155 441
MsG0180004038.01.T02 MTR_3g106470 71.429 308 28 2 1 285 182 452 5.14e-136 392
MsG0180004038.01.T02 MTR_8g063830 77.365 296 36 4 1 272 137 425 2.09e-132 382
MsG0180004038.01.T01 MTR_1g073400 71.338 157 2 1 211 324 4 160 1.49e-62 206
MsG0180004038.01.T01 MTR_1g071130 69.427 157 5 1 211 324 4 160 1.87e-61 202
MsG0180004038.01.T01 MTR_1g115145 69.427 157 5 1 211 324 4 160 9.01e-61 201
MsG0180004038.01.T01 MTR_3g106430 67.516 157 8 1 211 324 4 160 1.94e-58 195
MsG0180004038.01.T01 MTR_3g106480 65.605 157 11 1 211 324 4 160 9.17e-57 191
MsG0180004038.01.T01 MTR_3g106485 64.968 157 12 1 211 324 4 160 1.57e-56 190
MsG0180004038.01.T01 MTR_3g106420 64.331 157 13 1 211 324 6 162 2.22e-54 185
MsG0180004038.01.T01 MTR_1g083190 63.694 157 14 1 211 324 6 162 1.85e-52 179
MsG0180004038.01.T01 MTR_3g106470 52.071 169 18 3 199 324 24 172 1.18e-38 142
MsG0180004038.01.T01 MTR_3g065540 85.135 74 11 0 245 318 28 101 1.12e-35 125
MsG0180004038.01.T01 MTR_8g063830 52.740 146 15 2 211 324 4 127 5.60e-32 124
MsG0180004038.01.T01 MTR_1g105765 25.688 218 156 2 17 233 35 247 4.59e-23 97.1
MsG0180004038.01.T01 MTR_1g105780 25.229 218 157 2 17 233 35 247 6.95e-23 96.3
MsG0180004038.01.T01 MTR_2g100360 28.108 185 125 2 19 199 36 216 9.02e-20 87.8
MsG0180004038.01.T01 MTR_4g032560 27.273 187 131 1 13 199 59 240 1.62e-19 87.4
MsG0180004038.01.T01 MTR_4g032580 27.273 187 131 1 13 199 59 240 2.45e-19 87.0
MsG0180004038.01.T01 MTR_3g085990 31.250 128 83 1 14 141 32 154 3.84e-19 85.5
MsG0180004038.01.T01 MTR_3g070250 32.479 117 79 0 17 133 39 155 4.23e-18 83.2
MsG0180004038.01.T01 MTR_2g038740 23.774 265 189 3 17 270 34 296 1.55e-17 84.0
MsG0180004038.01.T01 MTR_1g052720 31.677 161 98 2 20 177 40 191 3.07e-17 81.3
MsG0180004038.01.T01 MTR_1g084880 25.668 187 131 2 17 199 34 216 1.97e-16 78.6
MsG0180004038.01.T01 MTR_6g465600 27.660 188 113 3 22 199 45 219 4.67e-16 77.8
MsG0180004038.01.T01 MTR_3g048970 32.727 110 74 0 17 126 34 143 6.38e-16 77.0
MsG0180004038.01.T01 MTR_5g066660 34.694 98 64 0 19 116 36 133 1.98e-14 72.8
MsG0180004038.01.T01 MTR_7g110090 23.684 190 137 2 17 206 34 215 1.15e-13 70.5
MsG0180004038.01.T01 MTR_4g062370 24.590 183 133 1 17 199 38 215 1.93e-13 71.6
MsG0180004038.01.T01 MTR_0246s0040 31.532 111 76 0 23 133 72 182 3.79e-13 69.3
MsG0180004038.01.T01 MTR_1g047540 25.137 183 117 2 17 199 34 196 5.71e-12 66.6
MsG0180004038.01.T01 MTR_1g087870 26.752 157 115 0 43 199 8 164 1.37e-11 64.3
MsG0180004038.01.T01 MTR_5g075200 24.793 121 86 1 34 154 64 179 2.24e-11 62.8
MsG0180004038.01.T01 MTR_6g066070 31.325 83 57 0 17 99 34 116 5.03e-11 59.7
MsG0180004038.01.T01 MTR_4g117740 32.051 78 53 0 35 112 63 140 6.05e-11 61.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0180004038.01.T02 AT5G25260 68.367 294 80 3 1 282 170 462 1.50e-137 396
MsG0180004038.01.T02 AT5G25250 67.918 293 79 3 1 281 170 459 6.09e-132 382
MsG0180004038.01.T02 AT5G64870 61.433 293 101 1 1 281 171 463 3.63e-115 340
MsG0180004038.01.T01 AT5G25260 59.236 157 21 1 211 324 4 160 4.37e-52 178
MsG0180004038.01.T01 AT5G25250 61.146 157 18 2 211 324 4 160 5.48e-52 178
MsG0180004038.01.T01 AT5G64870 60.625 160 20 2 208 324 2 161 3.42e-49 171

Find 162 sgRNAs with CRISPR-Local

Find 272 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATCTCCCTCCTTTACGTTTA+AGG 0.071204 1:+72376914 MsG0180004038.01.T01:CDS
TCATGAATATTCTCATATTT+AGG 0.139914 1:+72379358 MsG0180004038.01.T01:CDS
AATACAGACACATTTGATAT+TGG 0.242803 1:+72376639 MsG0180004038.01.T01:intron
TTAAATTTAGTGTCATTAAA+TGG 0.246283 1:+72377025 MsG0180004038.01.T01:CDS
TTGAACCTAAGATTAGTATT+TGG 0.251111 1:+72380756 MsG0180004038.01.T02:CDS
CGGAATAACGGAAGGTTCTA+TGG 0.257659 1:+72380802 MsG0180004038.01.T02:CDS
CTGCTAAAGCTGTGGCTCTA+AGG 0.272737 1:+72379686 MsG0180004038.01.T02:CDS
TTTGTATAAAATACCTCGTC+TGG 0.292200 1:-72376507 None:intergenic
AGGGATTACTTGATGATAAA+TGG 0.295084 1:+72380683 MsG0180004038.01.T02:CDS
GATACTTGATTTCATTGTTA+TGG 0.309469 1:-72376885 None:intergenic
GTGAAGTTGGCTCGAAATCT+AGG 0.314615 1:+72379446 MsG0180004038.01.T02:CDS
TTTAGGTACAAGAGGCTAAC+TGG 0.315931 1:+72380433 MsG0180004038.01.T02:intron
TTAGTCCAAATACTAATCTT+AGG 0.318195 1:-72380761 None:intergenic
GCCACCATGCTCTAATTTAT+AGG 0.319528 1:-72376806 None:intergenic
CATGAATATTCTCATATTTA+GGG 0.324660 1:+72379359 MsG0180004038.01.T01:CDS
CTTCCCGCTGTCTTCACAAT+TGG 0.324959 1:+72379068 MsG0180004038.01.T01:intron
ACAAGGAGGGATTTAGAGTT+AGG 0.330276 1:+72379548 MsG0180004038.01.T02:CDS
CATGTTGCCTCCTGCTTGGA+TGG 0.342126 1:+72380895 MsG0180004038.01.T02:CDS
AGGCTAGCACAATTAATTTA+CGG 0.346533 1:+72376934 MsG0180004038.01.T01:CDS
TGTAAATCAATAACCCGAAT+TGG 0.349196 1:-72379301 None:intergenic
GAAACGACTACACAGCTCTA+AGG 0.361629 1:+72380663 MsG0180004038.01.T02:CDS
AAGATTAGTATTTGGACTAA+TGG 0.361897 1:+72380764 MsG0180004038.01.T02:CDS
ATACAGACACATTTGATATT+GGG 0.363411 1:+72376640 MsG0180004038.01.T01:intron
ATCCGACAAAAGCTCTAATT+AGG 0.369231 1:+72380925 MsG0180004038.01.T02:CDS
CCTTCGCAGATGTTGCACTA+TGG 0.374617 1:+72376409 None:intergenic
CAATGCGAATGTTAAGCAAT+TGG 0.388576 1:+72379322 MsG0180004038.01.T01:CDS
AGATAGACAATGAGTTGAAT+AGG 0.389032 1:+72376680 MsG0180004038.01.T01:CDS
CAACTCGAACTAAACCAATT+CGG 0.390858 1:+72379287 MsG0180004038.01.T01:CDS
ATCAAAATCAAACGATGTAC+AGG 0.393868 1:+72378867 MsG0180004038.01.T01:intron
TGGTCCTCGTGTTGACGATC+AGG 0.407219 1:+72379088 MsG0180004038.01.T01:intron
AAGGAGCGGGGTAGTCGATC+TGG 0.413387 1:-72376981 None:intergenic
TCAAACTTGCAAAGAAATCA+TGG 0.416941 1:+72378942 MsG0180004038.01.T01:CDS
AACTCGAACTAAACCAATTC+GGG 0.427281 1:+72379288 MsG0180004038.01.T01:CDS
CTTCGCAGATGTTGCACTAT+GGG 0.428784 1:+72376410 None:intergenic
ACAGATCCAGGTGCTGCATT+AGG 0.428950 1:-72376958 None:intergenic
TCCGAGTACCTGGTGATAAC+CGG 0.437519 1:+72378902 MsG0180004038.01.T01:CDS
GATGTCTTCGATTCCAGCTC+CGG 0.437947 1:-72378921 None:intergenic
GAAGAAAGCGGCTTGGACTA+AGG 0.439613 1:+72379639 MsG0180004038.01.T02:CDS
CAGTCGCATATGTGGGGATA+AGG 0.445648 1:-72377000 None:intergenic
ATTTAAAACAGTCGCATATG+TGG 0.449053 1:-72377008 None:intergenic
TTGACGATAGCGGACATCAT+TGG 0.464204 1:+72377247 MsG0180004038.01.T01:CDS
AGATGTAACATCTGATCAAC+TGG 0.467401 1:+72377059 MsG0180004038.01.T01:CDS
AAATCAGTTTAGCGTATTTG+AGG 0.472961 1:-72379118 None:intergenic
TTCAGCAGTTGCATAAATGC+AGG 0.477011 1:-72376450 None:intergenic
ATAAATTAGAGCATGGTGGC+TGG 0.483104 1:+72376809 MsG0180004038.01.T01:CDS
TAGTCGATCTGGACAGATCC+AGG 0.489641 1:-72376970 None:intergenic
TTTAGGGCAAAAGACGCAAA+TGG 0.491891 1:+72379375 MsG0180004038.01.T02:exon
AAGACTGTCCATGAGCAAAC+AGG 0.492575 1:+72380872 MsG0180004038.01.T02:CDS
GGAAAGCTATATTTCTCTCA+TGG 0.493636 1:+72376763 MsG0180004038.01.T01:CDS
TCCAGGACTCAATCAATTTG+AGG 0.495516 1:+72376720 MsG0180004038.01.T01:CDS
TGGAAGCAGCGAATCAAGCT+AGG 0.499263 1:+72379395 MsG0180004038.01.T02:CDS
TTGGACTAAGGCGGCTCAAG+TGG 0.501148 1:+72379651 MsG0180004038.01.T02:CDS
TGCTAAAGCTGTGGCTCTAA+GGG 0.501192 1:+72379687 MsG0180004038.01.T02:CDS
CAGGCATGTTGCCTCCTGCT+TGG 0.503335 1:+72380891 MsG0180004038.01.T02:CDS
TGCTTCGATGACCATGGAAG+AGG 0.508530 1:+72379217 MsG0180004038.01.T01:CDS
AGCAAAAGCATCCGAGTACC+TGG 0.509436 1:+72378892 MsG0180004038.01.T01:CDS
AAAGAAATCATGGGTTTCCC+TGG 0.511521 1:+72378952 MsG0180004038.01.T01:CDS
TAGAGTTAGGACTGAAGTGA+AGG 0.517399 1:+72379561 MsG0180004038.01.T02:CDS
CGTAAAGGAGGGAGATAACT+CGG 0.517430 1:-72376907 None:intergenic
GCTAAGATGAAAGGTGAAGT+TGG 0.517494 1:+72379433 MsG0180004038.01.T02:CDS
CATGTCAAGGAACTAGTTCA+AGG 0.517510 1:+72379164 MsG0180004038.01.T01:CDS
GCAACATGCCTGTTTGCTCA+TGG 0.521020 1:-72380880 None:intergenic
ATGTTGCCTCCTGCTTGGAT+GGG 0.522936 1:+72380896 MsG0180004038.01.T02:CDS
TACCTGGTGATAACCGGAGC+TGG 0.525647 1:+72378908 MsG0180004038.01.T01:CDS
ACCTCAAATTGATTGAGTCC+TGG 0.525940 1:-72376721 None:intergenic
ATGGGCATGAAAGAGGTTGC+TGG 0.526365 1:+72380821 MsG0180004038.01.T02:CDS
AAGCAATTGGTGGATGTGCC+TGG 0.526695 1:+72379335 MsG0180004038.01.T01:CDS
TCCTCTGAAAACCTCTTCCA+TGG 0.530446 1:-72379228 None:intergenic
GGCTCAAGTGGCTGAAGTCG+AGG 0.533715 1:+72379663 MsG0180004038.01.T02:CDS
ATTAGTATTTGGACTAATGG+AGG 0.534214 1:+72380767 MsG0180004038.01.T02:CDS
TGCAACTGCTGAAACTAAAG+TGG 0.536228 1:+72376460 MsG0180004038.01.T01:CDS
TTTAAAACAGTCGCATATGT+GGG 0.537260 1:-72377007 None:intergenic
TTCCAGCTCCGGTTATCACC+AGG 0.538435 1:-72378910 None:intergenic
TGGTGGCATGTTTCAAGAGA+TGG 0.539247 1:+72380703 MsG0180004038.01.T02:CDS
GTTATTGCTATGCAGAGAGC+TGG 0.540557 1:+72379517 MsG0180004038.01.T02:CDS
TCCGGTTATCACCAGGTACT+CGG 0.542656 1:-72378903 None:intergenic
GGCTGAGGCTAATTCTGAGT+TGG 0.544080 1:+72379612 MsG0180004038.01.T02:CDS
TGACAATGGAGGCGGAATAA+CGG 0.546090 1:+72380790 MsG0180004038.01.T02:CDS
GCAGAAGGGATTGTGACACT+TGG 0.546780 1:+72380596 MsG0180004038.01.T02:CDS
TTGTATAAAATACCTCGTCT+GGG 0.548258 1:-72376506 None:intergenic
CACCGTCTTCGACCTCTCAC+CGG 0.548854 1:+72378984 MsG0180004038.01.T01:intron
GATAAGGTTCCCATCCAAGC+AGG 0.550974 1:-72380905 None:intergenic
GTTGTCGTGGATAAATATGA+TGG 0.551953 1:+72376742 MsG0180004038.01.T01:CDS
GGGAAGAACGAAAGGCAGAA+AGG 0.555894 1:-72379051 None:intergenic
TACGGTCCTAATGCAGCACC+TGG 0.556503 1:+72376952 MsG0180004038.01.T01:CDS
AATACACTTCTCAATGCACT+TGG 0.557121 1:+72380641 MsG0180004038.01.T02:CDS
AAGAGAGGCTGAAGTGGCTG+AGG 0.558698 1:+72379597 MsG0180004038.01.T02:CDS
TTGGATGGTTTAGGTACAAG+AGG 0.561865 1:+72380425 MsG0180004038.01.T02:intron
CAAACTTGCAAAGAAATCAT+GGG 0.562132 1:+72378943 MsG0180004038.01.T01:CDS
AGGTTCTATGGGCATGAAAG+AGG 0.562875 1:+72380814 MsG0180004038.01.T02:CDS
TGCGAATGTTAAGCAATTGG+TGG 0.563120 1:+72379325 MsG0180004038.01.T01:CDS
TGTGCTAGCCTTAAACGTAA+AGG 0.563280 1:-72376922 None:intergenic
GGACCAATTGTGAAGACAGC+GGG 0.564372 1:-72379071 None:intergenic
CTCAACCTCACCTTGCAACT+CGG 0.566348 1:-72379713 None:intergenic
GGAATAACGGAAGGTTCTAT+GGG 0.567693 1:+72380803 MsG0180004038.01.T02:CDS
CCTCGCTGCTTCGATGACCA+TGG 0.570615 1:+72379211 MsG0180004038.01.T01:CDS
ACTTCGAAGGTATAGTTCAC+CGG 0.571447 1:-72379003 None:intergenic
AAGACGGTGCAAGATTGACC+AGG 0.574032 1:-72378970 None:intergenic
AGGTATAGTTCACCGGTGAG+AGG 0.574045 1:-72378996 None:intergenic
AGTTGCAAGGTGAGGTTGAG+AGG 0.575856 1:+72379716 MsG0180004038.01.T02:CDS
CAATCAATTTGAGGTTGTCG+TGG 0.576079 1:+72376729 MsG0180004038.01.T01:CDS
CATATGTGGGGATAAGGAGC+GGG 0.578422 1:-72376994 None:intergenic
GCTATCAAATACTTTAGCAT+AGG 0.578440 1:-72377191 None:intergenic
TTAGGTACAAGAGGCTAACT+GGG 0.579786 1:+72380434 MsG0180004038.01.T02:intron
TGAAGTTGGCTCGAAATCTA+GGG 0.579862 1:+72379447 MsG0180004038.01.T02:CDS
GTGACACTTGGGAATGCTCA+AGG 0.583871 1:+72380608 MsG0180004038.01.T02:CDS
TGGCGAAGAAGAAAGCGGCT+TGG 0.584288 1:+72379632 MsG0180004038.01.T02:CDS
TCAGTTTAGCGTATTTGAGG+AGG 0.587438 1:-72379115 None:intergenic
GAATCAAAGAGAGGCTGAAG+TGG 0.589954 1:+72379591 MsG0180004038.01.T02:CDS
AAACGACTACACAGCTCTAA+GGG 0.592700 1:+72380664 MsG0180004038.01.T02:CDS
CTAAGGGAAGCCGAGTTGCA+AGG 0.593610 1:+72379703 MsG0180004038.01.T02:CDS
CAGAAGGGATTGTGACACTT+GGG 0.598815 1:+72380597 MsG0180004038.01.T02:CDS
ACTCATGGCTTGAACTTCGA+AGG 0.601319 1:-72379016 None:intergenic
AATGGAGGTGACAATGGAGG+CGG 0.607583 1:+72380782 MsG0180004038.01.T02:CDS
TGGACTAATGGAGGTGACAA+TGG 0.609237 1:+72380776 MsG0180004038.01.T02:CDS
GCTGGAGAGAGTGACAAGGA+GGG 0.609527 1:+72379535 MsG0180004038.01.T02:CDS
CTAGTTCAAGGAATCATCGA+AGG 0.612313 1:+72379176 MsG0180004038.01.T01:CDS
GTGGCAGAAGCTAAGATGAA+AGG 0.614706 1:+72379424 MsG0180004038.01.T02:CDS
GCTAGCCTTAAACGTAAAGG+AGG 0.620035 1:-72376919 None:intergenic
TGGAATAGAAGAACTGAACA+AGG 0.624967 1:+72376783 MsG0180004038.01.T01:CDS
AGCTGGAGAGAGTGACAAGG+AGG 0.627665 1:+72379534 MsG0180004038.01.T02:CDS
CACCGGTGAGAGGTCGAAGA+CGG 0.628279 1:-72378986 None:intergenic
AAGACAGCGGGAAGAACGAA+AGG 0.630029 1:-72379059 None:intergenic
GGAAGCAGCGAATCAAGCTA+GGG 0.630802 1:+72379396 MsG0180004038.01.T02:CDS
TAGTTCAAGGAATCATCGAA+GGG 0.630851 1:+72379177 MsG0180004038.01.T01:CDS
ATTGCAATTATTGACGATAG+CGG 0.633710 1:+72377237 MsG0180004038.01.T01:CDS
GTTGGCTCGAAATCTAGGGA+AGG 0.635413 1:+72379451 MsG0180004038.01.T02:CDS
AAGGCCTATAAATTAGAGCA+TGG 0.635613 1:+72376802 MsG0180004038.01.T01:CDS
ATCAATGCTGAGGCAGTACG+TGG 0.635980 1:+72380731 MsG0180004038.01.T02:CDS
GAGAGCTGGAGAGAGTGACA+AGG 0.636874 1:+72379531 MsG0180004038.01.T02:CDS
ATATGAGAATATTCATGACC+AGG 0.637090 1:-72379353 None:intergenic
ACATCATTGGTTGTTCAATG+TGG 0.637756 1:+72377260 MsG0180004038.01.T01:CDS
GCATATGTGGGGATAAGGAG+CGG 0.639162 1:-72376995 None:intergenic
TCAAAATCAAACGATGTACA+GGG 0.641066 1:+72378868 MsG0180004038.01.T01:intron
TAGTGTTGAGTATGAAACCA+AGG 0.644971 1:+72379792 MsG0180004038.01.T02:CDS
GGAAGCCGAGTTGCAAGGTG+AGG 0.648282 1:+72379708 MsG0180004038.01.T02:CDS
TTGGCTCGAAATCTAGGGAA+GGG 0.650991 1:+72379452 MsG0180004038.01.T02:CDS
TGAGTTGGCGAAGAAGAAAG+CGG 0.653130 1:+72379627 MsG0180004038.01.T02:CDS
TTAAAACAGTCGCATATGTG+GGG 0.654118 1:-72377006 None:intergenic
TAAACTCTCGAATCATGTCA+AGG 0.655320 1:+72379151 MsG0180004038.01.T01:CDS
TGGACAGTCTTAAACAGAGG+TGG 0.656626 1:-72380860 None:intergenic
GATTACTTGATGATAAATGG+TGG 0.658453 1:+72380686 MsG0180004038.01.T02:CDS
TCATGGACAGTCTTAAACAG+AGG 0.660499 1:-72380863 None:intergenic
CTAGCCTTAAACGTAAAGGA+GGG 0.662726 1:-72376918 None:intergenic
AGTCGAGGCTGCTAAAGCTG+TGG 0.666475 1:+72379678 MsG0180004038.01.T02:CDS
AATGGAGGCGGAATAACGGA+AGG 0.668536 1:+72380794 MsG0180004038.01.T02:CDS
AAGGTTCCCATCCAAGCAGG+AGG 0.669932 1:-72380902 None:intergenic
ACTAATGGAGGTGACAATGG+AGG 0.677352 1:+72380779 MsG0180004038.01.T02:CDS
TGATTCGAGAGTTTATCATG+AGG 0.680428 1:-72379143 None:intergenic
GATGGCTAAGATCAATGCTG+AGG 0.682349 1:+72380721 MsG0180004038.01.T02:CDS
GAATCAAGCTAGGGTTGACG+TGG 0.682564 1:+72379405 MsG0180004038.01.T02:CDS
ATTGGGTACAGCTCTCAACA+AGG 0.685497 1:+72376657 MsG0180004038.01.T01:CDS
CTTTCCTGATCGTCAACACG+AGG 0.689163 1:-72379092 None:intergenic
AGACGGTGCAAGATTGACCA+GGG 0.716272 1:-72378969 None:intergenic
GCCTATAAATTAGAGCATGG+TGG 0.717961 1:+72376805 MsG0180004038.01.T01:CDS
TATAAAATACCTCGTCTGGG+TGG 0.721657 1:-72376503 None:intergenic
AGTTCAAGGAATCATCGAAG+GGG 0.721843 1:+72379178 MsG0180004038.01.T01:CDS
AGGACCAATTGTGAAGACAG+CGG 0.726189 1:-72379072 None:intergenic
ATATGTGGGGATAAGGAGCG+GGG 0.728179 1:-72376993 None:intergenic
CCATGGTCATCGAAGCAGCG+AGG 0.728643 1:-72379211 None:intergenic
TGTGCAGTACCACCCAGACG+AGG 0.739111 1:+72376494 MsG0180004038.01.T01:CDS
GAAAGCGGCTTGGACTAAGG+CGG 0.747622 1:+72379642 MsG0180004038.01.T02:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AATAATAAAACATATCAAAT+AGG - Chr1:72377477-72377496 None:intergenic 10.0%
!! AATAATTAATAAATGAAAGA+AGG - Chr1:72379839-72379858 None:intergenic 10.0%
!! TTAAGAAAATATAATTAATC+TGG - Chr1:72377577-72377596 None:intergenic 10.0%
!!! AATAATACTTTAATATCTTT+TGG + Chr1:72379888-72379907 MsG0180004038.01.T02:intron 10.0%
!!! TTATTATTATTTCTACAAAT+CGG - Chr1:72377691-72377710 None:intergenic 10.0%
!! AATAATAATAATAGTCATCA+TGG + Chr1:72377700-72377719 MsG0180004038.01.T01:intron 15.0%
!! CATTATAAAACTAAATCATA+TGG + Chr1:72380061-72380080 MsG0180004038.01.T02:intron 15.0%
!!! AATGTTTTATTTTTAAGTAC+TGG + Chr1:72380394-72380413 MsG0180004038.01.T02:intron 15.0%
!!! GTTTTATTATTTTCAATTGA+AGG + Chr1:72377486-72377505 MsG0180004038.01.T01:intron 15.0%
!!! TAAAATTAAAAGTGCAAAAT+AGG - Chr1:72377410-72377429 None:intergenic 15.0%
!!! TGTTCTAAATTAATTTTGTT+AGG + Chr1:72380116-72380135 MsG0180004038.01.T02:intron 15.0%
!!! TTAAATTTAGTGTCATTAAA+TGG + Chr1:72377025-72377044 MsG0180004038.01.T01:CDS 15.0%
!! CAATTAAAAGCAATTGTTAT+AGG - Chr1:72378065-72378084 None:intergenic 20.0%
!! CATGAATATTCTCATATTTA+GGG + Chr1:72379359-72379378 MsG0180004038.01.T01:CDS 20.0%
!! GTATGATATAAAACTTCTAT+CGG + Chr1:72378521-72378540 MsG0180004038.01.T01:intron 20.0%
!! TCATACATAACAAAATGAAA+TGG - Chr1:72378507-72378526 None:intergenic 20.0%
!! TCATGAATATTCTCATATTT+AGG + Chr1:72379358-72379377 MsG0180004038.01.T01:CDS 20.0%
!! TTCATGTTAAAAAATTGACA+AGG - Chr1:72380316-72380335 None:intergenic 20.0%
!!! ATGTGTTTATATATTTTTCG+TGG - Chr1:72378240-72378259 None:intergenic 20.0%
!!! GTATTTTATACAAAAAATCC+TGG + Chr1:72376516-72376535 MsG0180004038.01.T01:intron 20.0%
!!! TATGGAATAGTCAAAATTTT+TGG + Chr1:72380003-72380022 MsG0180004038.01.T02:intron 20.0%
!!! TTAATATGTTATATGGACTA+TGG + Chr1:72379985-72380004 MsG0180004038.01.T02:intron 20.0%
!!! TTTTAATTTTAGTTGTCTGA+TGG + Chr1:72377419-72377438 MsG0180004038.01.T01:intron 20.0%
! AAAACAAAACGATTGACATA+TGG + Chr1:72380238-72380257 MsG0180004038.01.T02:intron 25.0%
! AAGATTAGTATTTGGACTAA+TGG + Chr1:72380764-72380783 MsG0180004038.01.T02:CDS 25.0%
! AATACAGACACATTTGATAT+TGG + Chr1:72376639-72376658 MsG0180004038.01.T01:intron 25.0%
! AATATCAAATGTGTCTGTAT+TGG - Chr1:72376640-72376659 None:intergenic 25.0%
! ACAAAATAATAGCAAGCAAA+GGG - Chr1:72380167-72380186 None:intergenic 25.0%
! AGTCACATCATAAAGAAAAA+TGG - Chr1:72378413-72378432 None:intergenic 25.0%
! ATACAGACACATTTGATATT+GGG + Chr1:72376640-72376659 MsG0180004038.01.T01:intron 25.0%
! ATTGACATATGGTATGTAAA+TGG + Chr1:72380249-72380268 MsG0180004038.01.T02:intron 25.0%
! GAAGTAAAACATAACAAAGT+AGG + Chr1:72380347-72380366 MsG0180004038.01.T02:intron 25.0%
! GATACTTGATTTCATTGTTA+TGG - Chr1:72376888-72376907 None:intergenic 25.0%
! GTTAAAAAATTGACAAGGTT+TGG - Chr1:72380311-72380330 None:intergenic 25.0%
! TATGACGTACTTATATCAAT+TGG + Chr1:72378139-72378158 MsG0180004038.01.T01:intron 25.0%
! TTAGTCCAAATACTAATCTT+AGG - Chr1:72380764-72380783 None:intergenic 25.0%
! TTGAACCTAAGATTAGTATT+TGG + Chr1:72380756-72380775 MsG0180004038.01.T02:CDS 25.0%
!! ACGTCATAAATGCTTTTAAT+AGG - Chr1:72378127-72378146 None:intergenic 25.0%
!! TGCTTTTAATAGGTAGTAAT+TGG - Chr1:72378117-72378136 None:intergenic 25.0%
!! TTTTCTGTTTCCATTCTTTA+CGG + Chr1:72378362-72378381 MsG0180004038.01.T01:intron 25.0%
!!! GCTATTATTTTGTGTACTTT+TGG + Chr1:72380174-72380193 MsG0180004038.01.T02:intron 25.0%
!!! TCACTGTAGTTAAAGTTTTT+TGG + Chr1:72379922-72379941 MsG0180004038.01.T02:intron 25.0%
!!! TCGTGGTTATTTTTTGTTAT+GGG - Chr1:72378223-72378242 None:intergenic 25.0%
!!! TTCGTGGTTATTTTTTGTTA+TGG - Chr1:72378224-72378243 None:intergenic 25.0%
AAATCAGTTTAGCGTATTTG+AGG - Chr1:72379121-72379140 None:intergenic 30.0%
AAGAAGGAGTTATATTTGCA+TGG - Chr1:72379823-72379842 None:intergenic 30.0%
AATCCTGGAAATCAATCATA+CGG + Chr1:72376531-72376550 MsG0180004038.01.T01:intron 30.0%
ACCTTGTATTGCAAATCAAA+TGG - Chr1:72377779-72377798 None:intergenic 30.0%
AGGCTAGCACAATTAATTTA+CGG + Chr1:72376934-72376953 MsG0180004038.01.T01:CDS 30.0%
ATATGAGAATATTCATGACC+AGG - Chr1:72379356-72379375 None:intergenic 30.0%
ATCAAAATCAAACGATGTAC+AGG + Chr1:72378867-72378886 MsG0180004038.01.T01:intron 30.0%
ATTAGTATTTGGACTAATGG+AGG + Chr1:72380767-72380786 MsG0180004038.01.T02:CDS 30.0%
ATTGCAATTATTGACGATAG+CGG + Chr1:72377237-72377256 MsG0180004038.01.T01:CDS 30.0%
CAAACTTGCAAAGAAATCAT+GGG + Chr1:72378943-72378962 MsG0180004038.01.T01:CDS 30.0%
CACAAAATAATAGCAAGCAA+AGG - Chr1:72380168-72380187 None:intergenic 30.0%
GCTATCAAATACTTTAGCAT+AGG - Chr1:72377194-72377213 None:intergenic 30.0%
GGCAAATAGATTGAAGAATA+TGG + Chr1:72380270-72380289 MsG0180004038.01.T02:intron 30.0%
GTCACGAAAAACTTAATACA+CGG + Chr1:72378161-72378180 MsG0180004038.01.T01:intron 30.0%
TCAAAATCAAACGATGTACA+GGG + Chr1:72378868-72378887 MsG0180004038.01.T01:intron 30.0%
TCAAACTTGCAAAGAAATCA+TGG + Chr1:72378942-72378961 MsG0180004038.01.T01:CDS 30.0%
TGTAAATCAATAACCCGAAT+TGG - Chr1:72379304-72379323 None:intergenic 30.0%
TTCTTAGAAACCGACAAAAT+AGG + Chr1:72377821-72377840 MsG0180004038.01.T01:intron 30.0%
TTGTATAAAATACCTCGTCT+GGG - Chr1:72376509-72376528 None:intergenic 30.0%
TTTGTATAAAATACCTCGTC+TGG - Chr1:72376510-72376529 None:intergenic 30.0%
! AAAAATTGACAAGGTTTGGT+TGG - Chr1:72380307-72380326 None:intergenic 30.0%
! AATTGAAGGATGCTATGTTT+TGG + Chr1:72377500-72377519 MsG0180004038.01.T01:intron 30.0%
! AGATAGACAATGAGTTGAAT+AGG + Chr1:72376680-72376699 MsG0180004038.01.T01:CDS 30.0%
! AGGGATTACTTGATGATAAA+TGG + Chr1:72380683-72380702 MsG0180004038.01.T02:CDS 30.0%
! ATTTAAAACAGTCGCATATG+TGG - Chr1:72377011-72377030 None:intergenic 30.0%
! GATTACTTGATGATAAATGG+TGG + Chr1:72380686-72380705 MsG0180004038.01.T02:CDS 30.0%
! GTTTCAATTTTCTTGTCAAG+AGG + Chr1:72378830-72378849 MsG0180004038.01.T01:intron 30.0%
! TGACGATATACCTATTTTGT+CGG - Chr1:72377834-72377853 None:intergenic 30.0%
! TGATTCGTTTAACTTCTATG+TGG + Chr1:72378569-72378588 MsG0180004038.01.T01:intron 30.0%
! TTTAAAACAGTCGCATATGT+GGG - Chr1:72377010-72377029 None:intergenic 30.0%
!! TAGAGTTTGTTATGCGATAA+AGG - Chr1:72378750-72378769 None:intergenic 30.0%
!!! TATGTCATTTTAATCGATCC+AGG + Chr1:72376703-72376722 MsG0180004038.01.T01:CDS 30.0%
AACACATTTGTCACGCTATA+TGG + Chr1:72378253-72378272 MsG0180004038.01.T01:intron 35.0%
AACTCGAACTAAACCAATTC+GGG + Chr1:72379288-72379307 MsG0180004038.01.T01:CDS 35.0%
AAGGCCTATAAATTAGAGCA+TGG + Chr1:72376802-72376821 MsG0180004038.01.T01:CDS 35.0%
AATACACTTCTCAATGCACT+TGG + Chr1:72380641-72380660 MsG0180004038.01.T02:CDS 35.0%
AGATGTAACATCTGATCAAC+TGG + Chr1:72377059-72377078 MsG0180004038.01.T01:CDS 35.0%
AGCAATTCTGTATGAGAAGA+AGG + Chr1:72380485-72380504 MsG0180004038.01.T02:intron 35.0%
AGTGACTCTGTTCTTTCTTA+TGG - Chr1:72378798-72378817 None:intergenic 35.0%
AGTGCAAAATAGGAATGCAT+TGG - Chr1:72377400-72377419 None:intergenic 35.0%
CAACTCGAACTAAACCAATT+CGG + Chr1:72379287-72379306 MsG0180004038.01.T01:CDS 35.0%
CAATGCGAATGTTAAGCAAT+TGG + Chr1:72379322-72379341 MsG0180004038.01.T01:CDS 35.0%
CTGTTCTTTCTTATGGCTTA+AGG - Chr1:72378791-72378810 None:intergenic 35.0%
GAGCTATACGCAAAAAAAAG+AGG + Chr1:72380574-72380593 MsG0180004038.01.T02:CDS 35.0%
GGAAAGCTATATTTCTCTCA+TGG + Chr1:72376763-72376782 MsG0180004038.01.T01:CDS 35.0%
GTGCAAAATAGGAATGCATT+GGG - Chr1:72377399-72377418 None:intergenic 35.0%
GTTATGCGATAAAGGAAACT+GGG - Chr1:72378742-72378761 None:intergenic 35.0%
GTTGTCGTGGATAAATATGA+TGG + Chr1:72376742-72376761 MsG0180004038.01.T01:CDS 35.0%
TAAACTCTCGAATCATGTCA+AGG + Chr1:72379151-72379170 MsG0180004038.01.T01:CDS 35.0%
TAGCATTAACTACGTTCTCA+TGG - Chr1:72377882-72377901 None:intergenic 35.0%
TAGTTCAAGGAATCATCGAA+GGG + Chr1:72379177-72379196 MsG0180004038.01.T01:CDS 35.0%
TGAAGGGTAGTTACGTATAA+CGG + Chr1:72378664-72378683 MsG0180004038.01.T01:intron 35.0%
TGATTCGAGAGTTTATCATG+AGG - Chr1:72379146-72379165 None:intergenic 35.0%
TGCAAAATAGGAATGCATTG+GGG - Chr1:72377398-72377417 None:intergenic 35.0%
TGGAATAGAAGAACTGAACA+AGG + Chr1:72376783-72376802 MsG0180004038.01.T01:CDS 35.0%
TGGCTTGAAAACGTAGTTAA+TGG + Chr1:72378010-72378029 MsG0180004038.01.T01:intron 35.0%
TGTTATGCGATAAAGGAAAC+TGG - Chr1:72378743-72378762 None:intergenic 35.0%
TTAAAACAGTCGCATATGTG+GGG - Chr1:72377009-72377028 None:intergenic 35.0%
! AAACTTCTATCGGCTATGTA+TGG + Chr1:72378531-72378550 MsG0180004038.01.T01:intron 35.0%
! AACGAATGATGCACTGATAA+TGG + Chr1:72377968-72377987 MsG0180004038.01.T01:intron 35.0%
! AAGGTTTGGAGCAAAAACTT+TGG + Chr1:72377371-72377390 MsG0180004038.01.T01:intron 35.0%
! ACATCATTGGTTGTTCAATG+TGG + Chr1:72377260-72377279 MsG0180004038.01.T01:CDS 35.0%
! AGTGTCATTACCGTAAAGAA+TGG - Chr1:72378375-72378394 None:intergenic 35.0%
! ATATTTGCATGGACTAACCT+TGG - Chr1:72379812-72379831 None:intergenic 35.0%
! ATTAGAGCTTTTGTCGGATA+AGG - Chr1:72380924-72380943 None:intergenic 35.0%
! GCAATTAAGAGCGTAGTTAA+TGG + Chr1:72377990-72378009 MsG0180004038.01.T01:intron 35.0%
! TAACCGTATGATTGATTTCC+AGG - Chr1:72376537-72376556 None:intergenic 35.0%
! TAGTGTTGAGTATGAAACCA+AGG + Chr1:72379792-72379811 MsG0180004038.01.T02:CDS 35.0%
! TCCCTCAACTTTTTGTGATT+CGG + Chr1:72376851-72376870 MsG0180004038.01.T01:CDS 35.0%
! TGTGGTCATTCTTTTTGACA+AGG + Chr1:72377278-72377297 MsG0180004038.01.T01:intron 35.0%
!! GCCATTTGATTTGCAATACA+AGG + Chr1:72377775-72377794 MsG0180004038.01.T01:intron 35.0%
!! GGTTTTTGAGAATCAAAGAG+AGG + Chr1:72379582-72379601 MsG0180004038.01.T02:CDS 35.0%
AAAGAAATCATGGGTTTCCC+TGG + Chr1:72378952-72378971 MsG0180004038.01.T01:CDS 40.0%
AAATCAAGTTTGGAGGGGAT+TGG + Chr1:72377304-72377323 MsG0180004038.01.T01:intron 40.0%
AAGGACGAAATCAAGTTTGG+AGG + Chr1:72377297-72377316 MsG0180004038.01.T01:intron 40.0%
AATGTGCCAAGTCTAAATCG+TGG + Chr1:72380139-72380158 MsG0180004038.01.T02:intron 40.0%
ACCCGAATCACAAAAAGTTG+AGG - Chr1:72376856-72376875 None:intergenic 40.0%
ACCTCAAATTGATTGAGTCC+TGG - Chr1:72376724-72376743 None:intergenic 40.0%
ACGCAAAAAAAAGAGGCAGA+AGG + Chr1:72380581-72380600 MsG0180004038.01.T02:CDS 40.0%
AGCAAGTGCTATGTTTCGTT+TGG + Chr1:72380213-72380232 MsG0180004038.01.T02:intron 40.0%
AGGACGAAATCAAGTTTGGA+GGG + Chr1:72377298-72377317 MsG0180004038.01.T01:intron 40.0%
AGTGATCATGTCTCAAACCA+TGG + Chr1:72377743-72377762 MsG0180004038.01.T01:intron 40.0%
AGTTCAAGGAATCATCGAAG+GGG + Chr1:72379178-72379197 MsG0180004038.01.T01:CDS 40.0%
ATAAATTAGAGCATGGTGGC+TGG + Chr1:72376809-72376828 MsG0180004038.01.T01:CDS 40.0%
ATCTCCCTCCTTTACGTTTA+AGG + Chr1:72376914-72376933 MsG0180004038.01.T01:CDS 40.0%
CATGTCAAGGAACTAGTTCA+AGG + Chr1:72379164-72379183 MsG0180004038.01.T01:CDS 40.0%
CCCGAATCACAAAAAGTTGA+GGG - Chr1:72376855-72376874 None:intergenic 40.0%
CGCAAAAAAAAGAGGCAGAA+GGG + Chr1:72380582-72380601 MsG0180004038.01.T02:CDS 40.0%
CTAGTTCAAGGAATCATCGA+AGG + Chr1:72379176-72379195 MsG0180004038.01.T01:CDS 40.0%
GAATGCAGCAAAAATTGACG+CGG + Chr1:72379486-72379505 MsG0180004038.01.T02:CDS 40.0%
GACAAGGACGAAATCAAGTT+TGG + Chr1:72377294-72377313 MsG0180004038.01.T01:intron 40.0%
GCAAAATAGGAATGCATTGG+GGG - Chr1:72377397-72377416 None:intergenic 40.0%
GCCACCATGCTCTAATTTAT+AGG - Chr1:72376809-72376828 None:intergenic 40.0%
GCCTATAAATTAGAGCATGG+TGG + Chr1:72376805-72376824 MsG0180004038.01.T01:CDS 40.0%
GCTAAGATGAAAGGTGAAGT+TGG + Chr1:72379433-72379452 MsG0180004038.01.T02:CDS 40.0%
TAGAGTTAGGACTGAAGTGA+AGG + Chr1:72379561-72379580 MsG0180004038.01.T02:CDS 40.0%
TATAAAATACCTCGTCTGGG+TGG - Chr1:72376506-72376525 None:intergenic 40.0%
TCAGTTTAGCGTATTTGAGG+AGG - Chr1:72379118-72379137 None:intergenic 40.0%
TCATGGACAGTCTTAAACAG+AGG - Chr1:72380866-72380885 None:intergenic 40.0%
TCCAGGACTCAATCAATTTG+AGG + Chr1:72376720-72376739 MsG0180004038.01.T01:CDS 40.0%
TCTCAAACCATGGACGATAA+AGG + Chr1:72377753-72377772 MsG0180004038.01.T01:intron 40.0%
TGCAACTGCTGAAACTAAAG+TGG + Chr1:72376460-72376479 MsG0180004038.01.T01:CDS 40.0%
TGCGAATGTTAAGCAATTGG+TGG + Chr1:72379325-72379344 MsG0180004038.01.T01:CDS 40.0%
TTAGGTACAAGAGGCTAACT+GGG + Chr1:72380434-72380453 MsG0180004038.01.T02:intron 40.0%
TTCAGCAGTTGCATAAATGC+AGG - Chr1:72376453-72376472 None:intergenic 40.0%
TTGGATGGTTTAGGTACAAG+AGG + Chr1:72380425-72380444 MsG0180004038.01.T02:intron 40.0%
TTTAGGTACAAGAGGCTAAC+TGG + Chr1:72380433-72380452 MsG0180004038.01.T02:intron 40.0%
! AAACGACTACACAGCTCTAA+GGG + Chr1:72380664-72380683 MsG0180004038.01.T02:CDS 40.0%
! AAGGCAGAAAGGCAGTTTTT+CGG - Chr1:72379043-72379062 None:intergenic 40.0%
! ACAAGGAGGGATTTAGAGTT+AGG + Chr1:72379548-72379567 MsG0180004038.01.T02:CDS 40.0%
! ACTTCGAAGGTATAGTTCAC+CGG - Chr1:72379006-72379025 None:intergenic 40.0%
! CAATCAATTTGAGGTTGTCG+TGG + Chr1:72376729-72376748 MsG0180004038.01.T01:CDS 40.0%
! CCCTCAACTTTTTGTGATTC+GGG + Chr1:72376852-72376871 MsG0180004038.01.T01:CDS 40.0%
! GGAATAACGGAAGGTTCTAT+GGG + Chr1:72380803-72380822 MsG0180004038.01.T02:CDS 40.0%
! TTTAGGGCAAAAGACGCAAA+TGG + Chr1:72379375-72379394 MsG0180004038.01.T02:exon 40.0%
!! CTAGCCTTAAACGTAAAGGA+GGG - Chr1:72376921-72376940 None:intergenic 40.0%
!! TGAAGTTGGCTCGAAATCTA+GGG + Chr1:72379447-72379466 MsG0180004038.01.T02:CDS 40.0%
!! TGTGCTAGCCTTAAACGTAA+AGG - Chr1:72376925-72376944 None:intergenic 40.0%
AAGACTGTCCATGAGCAAAC+AGG + Chr1:72380872-72380891 MsG0180004038.01.T02:CDS 45.0%
AAGGAATCTGTACGAGTGGA+AGG + Chr1:72377344-72377363 MsG0180004038.01.T01:intron 45.0%
ACTAATGGAGGTGACAATGG+AGG + Chr1:72380779-72380798 MsG0180004038.01.T02:CDS 45.0%
ACTCATGGCTTGAACTTCGA+AGG - Chr1:72379019-72379038 None:intergenic 45.0%
AGGACCAATTGTGAAGACAG+CGG - Chr1:72379075-72379094 None:intergenic 45.0%
AGGGATCCACGATTTAGACT+TGG - Chr1:72380148-72380167 None:intergenic 45.0%
AGGTTCTATGGGCATGAAAG+AGG + Chr1:72380814-72380833 MsG0180004038.01.T02:CDS 45.0%
ATGCGATAAAGGAAACTGGG+AGG - Chr1:72378739-72378758 None:intergenic 45.0%
ATTGGGTACAGCTCTCAACA+AGG + Chr1:72376657-72376676 MsG0180004038.01.T01:CDS 45.0%
CAAATGGCCTTTATCGTCCA+TGG - Chr1:72377763-72377782 None:intergenic 45.0%
CAGAAGGGATTGTGACACTT+GGG + Chr1:72380597-72380616 MsG0180004038.01.T02:CDS 45.0%
CGTAAAGGAGGGAGATAACT+CGG - Chr1:72376910-72376929 None:intergenic 45.0%
GAAACGACTACACAGCTCTA+AGG + Chr1:72380663-72380682 MsG0180004038.01.T02:CDS 45.0%
GAATCAAAGAGAGGCTGAAG+TGG + Chr1:72379591-72379610 MsG0180004038.01.T02:CDS 45.0%
GATGGCTAAGATCAATGCTG+AGG + Chr1:72380721-72380740 MsG0180004038.01.T02:CDS 45.0%
GGACGAAATCAAGTTTGGAG+GGG + Chr1:72377299-72377318 MsG0180004038.01.T01:intron 45.0%
GTGGCAGAAGCTAAGATGAA+AGG + Chr1:72379424-72379443 MsG0180004038.01.T02:CDS 45.0%
GTTATTGCTATGCAGAGAGC+TGG + Chr1:72379517-72379536 MsG0180004038.01.T02:CDS 45.0%
TCTGTATGAGAAGAAGGCAG+AGG + Chr1:72380491-72380510 MsG0180004038.01.T02:intron 45.0%
TGACAATGGAGGCGGAATAA+CGG + Chr1:72380790-72380809 MsG0180004038.01.T02:CDS 45.0%
TGGACAGTCTTAAACAGAGG+TGG - Chr1:72380863-72380882 None:intergenic 45.0%
TGGACTAATGGAGGTGACAA+TGG + Chr1:72380776-72380795 MsG0180004038.01.T02:CDS 45.0%
TGGTGGCATGTTTCAAGAGA+TGG + Chr1:72380703-72380722 MsG0180004038.01.T02:CDS 45.0%
! ACCATGGAAGAGGTTTTCAG+AGG + Chr1:72379227-72379246 MsG0180004038.01.T01:CDS 45.0%
! CGGAATAACGGAAGGTTCTA+TGG + Chr1:72380802-72380821 MsG0180004038.01.T02:CDS 45.0%
! GGAAAATGTTTTGCACCGCA+AGG + Chr1:72377325-72377344 MsG0180004038.01.T01:intron 45.0%
! TCCTCTGAAAACCTCTTCCA+TGG - Chr1:72379231-72379250 None:intergenic 45.0%
! TGAGTTGGCGAAGAAGAAAG+CGG + Chr1:72379627-72379646 MsG0180004038.01.T02:CDS 45.0%
! TTGGCTCGAAATCTAGGGAA+GGG + Chr1:72379452-72379471 MsG0180004038.01.T02:CDS 45.0%
!! GAGTGGAAGGCATTAAGGTT+TGG + Chr1:72377357-72377376 MsG0180004038.01.T01:intron 45.0%
!! GCTAGCCTTAAACGTAAAGG+AGG - Chr1:72376922-72376941 None:intergenic 45.0%
!! GTGAAGTTGGCTCGAAATCT+AGG + Chr1:72379446-72379465 MsG0180004038.01.T02:CDS 45.0%
!! TGCTAAAGCTGTGGCTCTAA+GGG + Chr1:72379687-72379706 MsG0180004038.01.T02:CDS 45.0%
!! TGTACGAGTGGAAGGCATTA+AGG + Chr1:72377352-72377371 MsG0180004038.01.T01:intron 45.0%
!! TTGACGATAGCGGACATCAT+TGG + Chr1:72377247-72377266 MsG0180004038.01.T01:CDS 45.0%
!!! AAAAAAAAATTATATTTTGA+AGG + Chr1:72378647-72378666 MsG0180004038.01.T01:intron 5.0%
!!! AAAAAAAATTATATTTTGAA+GGG + Chr1:72378648-72378667 MsG0180004038.01.T01:intron 5.0%
!!! CAAAATATAATTTTTTTTTA+CGG - Chr1:72378646-72378665 None:intergenic 5.0%
!!! TTATTTTTTAATATGTTATA+TGG + Chr1:72379978-72379997 MsG0180004038.01.T02:intron 5.0%
AAGACAGCGGGAAGAACGAA+AGG - Chr1:72379062-72379081 None:intergenic 50.0%
AAGACGGTGCAAGATTGACC+AGG - Chr1:72378973-72378992 None:intergenic 50.0%
AATGGAGGTGACAATGGAGG+CGG + Chr1:72380782-72380801 MsG0180004038.01.T02:CDS 50.0%
AGACGGTGCAAGATTGACCA+GGG - Chr1:72378972-72378991 None:intergenic 50.0%
AGGTATAGTTCACCGGTGAG+AGG - Chr1:72378999-72379018 None:intergenic 50.0%
AGTTGCAAGGTGAGGTTGAG+AGG + Chr1:72379716-72379735 MsG0180004038.01.T02:CDS 50.0%
ATATGTGGGGATAAGGAGCG+GGG - Chr1:72376996-72377015 None:intergenic 50.0%
ATCAATGCTGAGGCAGTACG+TGG + Chr1:72380731-72380750 MsG0180004038.01.T02:CDS 50.0%
ATGGGCATGAAAGAGGTTGC+TGG + Chr1:72380821-72380840 MsG0180004038.01.T02:CDS 50.0%
ATGTTGCCTCCTGCTTGGAT+GGG + Chr1:72380896-72380915 MsG0180004038.01.T02:CDS 50.0%
CAGTCGCATATGTGGGGATA+AGG - Chr1:72377003-72377022 None:intergenic 50.0%
CATATGTGGGGATAAGGAGC+GGG - Chr1:72376997-72377016 None:intergenic 50.0%
CCACTCGTACAGATTCCTTG+CGG - Chr1:72377343-72377362 None:intergenic 50.0%
CTCAACCTCACCTTGCAACT+CGG - Chr1:72379716-72379735 None:intergenic 50.0%
CTTCCCGCTGTCTTCACAAT+TGG + Chr1:72379068-72379087 MsG0180004038.01.T01:intron 50.0%
CTTTCCTGATCGTCAACACG+AGG - Chr1:72379095-72379114 None:intergenic 50.0%
GAATCAAGCTAGGGTTGACG+TGG + Chr1:72379405-72379424 MsG0180004038.01.T02:CDS 50.0%
GATAAGGTTCCCATCCAAGC+AGG - Chr1:72380908-72380927 None:intergenic 50.0%
GATGTCTTCGATTCCAGCTC+CGG - Chr1:72378924-72378943 None:intergenic 50.0%
GCAACATGCCTGTTTGCTCA+TGG - Chr1:72380883-72380902 None:intergenic 50.0%
GCAGAAGGGATTGTGACACT+TGG + Chr1:72380596-72380615 MsG0180004038.01.T02:CDS 50.0%
GCATATGTGGGGATAAGGAG+CGG - Chr1:72376998-72377017 None:intergenic 50.0%
GGAAGCAGCGAATCAAGCTA+GGG + Chr1:72379396-72379415 MsG0180004038.01.T02:CDS 50.0%
GGACCAATTGTGAAGACAGC+GGG - Chr1:72379074-72379093 None:intergenic 50.0%
GGCTGAGGCTAATTCTGAGT+TGG + Chr1:72379612-72379631 MsG0180004038.01.T02:CDS 50.0%
GGGAAGAACGAAAGGCAGAA+AGG - Chr1:72379054-72379073 None:intergenic 50.0%
GTGACACTTGGGAATGCTCA+AGG + Chr1:72380608-72380627 MsG0180004038.01.T02:CDS 50.0%
TAGTCGATCTGGACAGATCC+AGG - Chr1:72376973-72376992 None:intergenic 50.0%
TCCGAGTACCTGGTGATAAC+CGG + Chr1:72378902-72378921 MsG0180004038.01.T01:CDS 50.0%
TCCGGTTATCACCAGGTACT+CGG - Chr1:72378906-72378925 None:intergenic 50.0%
TCTATGTGGTAAGACCCGTG+CGG + Chr1:72378583-72378602 MsG0180004038.01.T01:intron 50.0%
TGCTTCGATGACCATGGAAG+AGG + Chr1:72379217-72379236 MsG0180004038.01.T01:CDS 50.0%
TGGAAGCAGCGAATCAAGCT+AGG + Chr1:72379395-72379414 MsG0180004038.01.T02:CDS 50.0%
! AAGCAATTGGTGGATGTGCC+TGG + Chr1:72379335-72379354 MsG0180004038.01.T01:CDS 50.0%
! AATGGAGGCGGAATAACGGA+AGG + Chr1:72380794-72380813 MsG0180004038.01.T02:CDS 50.0%
! ACAGATCCAGGTGCTGCATT+AGG - Chr1:72376961-72376980 None:intergenic 50.0%
! CTGCTAAAGCTGTGGCTCTA+AGG + Chr1:72379686-72379705 MsG0180004038.01.T02:CDS 50.0%
! GAAGAAAGCGGCTTGGACTA+AGG + Chr1:72379639-72379658 MsG0180004038.01.T02:CDS 50.0%
!! AGCAAAAGCATCCGAGTACC+TGG + Chr1:72378892-72378911 MsG0180004038.01.T01:CDS 50.0%
!! AGGCAGTTTTTCGGCACTCA+TGG - Chr1:72379034-72379053 None:intergenic 50.0%
!! GTTGGCTCGAAATCTAGGGA+AGG + Chr1:72379451-72379470 MsG0180004038.01.T02:CDS 50.0%
AAGAGAGGCTGAAGTGGCTG+AGG + Chr1:72379597-72379616 MsG0180004038.01.T02:CDS 55.0%
AAGGTTCCCATCCAAGCAGG+AGG - Chr1:72380905-72380924 None:intergenic 55.0%
AGCTGGAGAGAGTGACAAGG+AGG + Chr1:72379534-72379553 MsG0180004038.01.T02:CDS 55.0%
AGTCGAGGCTGCTAAAGCTG+TGG + Chr1:72379678-72379697 MsG0180004038.01.T02:CDS 55.0%
CATGTTGCCTCCTGCTTGGA+TGG + Chr1:72380895-72380914 MsG0180004038.01.T02:CDS 55.0%
CCGCAAGGAATCTGTACGAG+TGG + Chr1:72377340-72377359 MsG0180004038.01.T01:intron 55.0%
CTAAGGGAAGCCGAGTTGCA+AGG + Chr1:72379703-72379722 MsG0180004038.01.T02:CDS 55.0%
GAGAGCTGGAGAGAGTGACA+AGG + Chr1:72379531-72379550 MsG0180004038.01.T02:CDS 55.0%
GCTGGAGAGAGTGACAAGGA+GGG + Chr1:72379535-72379554 MsG0180004038.01.T02:CDS 55.0%
TACCTGGTGATAACCGGAGC+TGG + Chr1:72378908-72378927 MsG0180004038.01.T01:CDS 55.0%
TACGGTCCTAATGCAGCACC+TGG + Chr1:72376952-72376971 MsG0180004038.01.T01:CDS 55.0%
TGGCGAAGAAGAAAGCGGCT+TGG + Chr1:72379632-72379651 MsG0180004038.01.T02:CDS 55.0%
TTCCAGCTCCGGTTATCACC+AGG - Chr1:72378913-72378932 None:intergenic 55.0%
TTGGACTAAGGCGGCTCAAG+TGG + Chr1:72379651-72379670 MsG0180004038.01.T02:CDS 55.0%
! GAAAGCGGCTTGGACTAAGG+CGG + Chr1:72379642-72379661 MsG0180004038.01.T02:CDS 55.0%
! TGGTCCTCGTGTTGACGATC+AGG + Chr1:72379088-72379107 MsG0180004038.01.T01:intron 55.0%
AAGGAGCGGGGTAGTCGATC+TGG - Chr1:72376984-72377003 None:intergenic 60.0%
ATTGACCCGTGCTACCGCAC+GGG - Chr1:72378600-72378619 None:intergenic 60.0%
CACCGGTGAGAGGTCGAAGA+CGG - Chr1:72378989-72379008 None:intergenic 60.0%
CACCGTCTTCGACCTCTCAC+CGG + Chr1:72378984-72379003 MsG0180004038.01.T01:intron 60.0%
CAGGCATGTTGCCTCCTGCT+TGG + Chr1:72380891-72380910 MsG0180004038.01.T02:CDS 60.0%
CATTGACCCGTGCTACCGCA+CGG - Chr1:72378601-72378620 None:intergenic 60.0%
CCATGGTCATCGAAGCAGCG+AGG - Chr1:72379214-72379233 None:intergenic 60.0%
CCTCGCTGCTTCGATGACCA+TGG + Chr1:72379211-72379230 MsG0180004038.01.T01:CDS 60.0%
GGAAGCCGAGTTGCAAGGTG+AGG + Chr1:72379708-72379727 MsG0180004038.01.T02:CDS 60.0%
GGCTCAAGTGGCTGAAGTCG+AGG + Chr1:72379663-72379682 MsG0180004038.01.T02:CDS 60.0%
GTAAGACCCGTGCGGTAGCA+CGG + Chr1:72378591-72378610 MsG0180004038.01.T01:intron 60.0%
TAAGACCCGTGCGGTAGCAC+GGG + Chr1:72378592-72378611 MsG0180004038.01.T01:intron 60.0%
TGTGCAGTACCACCCAGACG+AGG + Chr1:72376494-72376513 MsG0180004038.01.T01:CDS 60.0%
CGTGCGGTAGCACGGGTCAA+TGG + Chr1:72378599-72378618 MsG0180004038.01.T01:intron 65.0%
Chromosome Type Strat End Strand Name
Chr1 gene 72376420 72380946 72376420 ID=MsG0180004038.01;Name=MsG0180004038.01
Chr1 mRNA 72376420 72379379 72376420 ID=MsG0180004038.01.T01;Parent=MsG0180004038.01;Name=MsG0180004038.01.T01;_AED=0.63;_eAED=0.63;_QI=0|0|0|0.6|1|1|5|0|327
Chr1 exon 72376420 72376515 72376420 ID=MsG0180004038.01.T01:exon:31104;Parent=MsG0180004038.01.T01
Chr1 exon 72376646 72377080 72376646 ID=MsG0180004038.01.T01:exon:31105;Parent=MsG0180004038.01.T01
Chr1 exon 72377184 72377281 72377184 ID=MsG0180004038.01.T01:exon:31106;Parent=MsG0180004038.01.T01
Chr1 exon 72378889 72378973 72378889 ID=MsG0180004038.01.T01:exon:31107;Parent=MsG0180004038.01.T01
Chr1 exon 72379110 72379379 72379110 ID=MsG0180004038.01.T01:exon:31108;Parent=MsG0180004038.01.T01
Chr1 CDS 72376420 72376515 72376420 ID=MsG0180004038.01.T01:cds;Parent=MsG0180004038.01.T01
Chr1 CDS 72376646 72377080 72376646 ID=MsG0180004038.01.T01:cds;Parent=MsG0180004038.01.T01
Chr1 CDS 72377184 72377281 72377184 ID=MsG0180004038.01.T01:cds;Parent=MsG0180004038.01.T01
Chr1 CDS 72378889 72378973 72378889 ID=MsG0180004038.01.T01:cds;Parent=MsG0180004038.01.T01
Chr1 CDS 72379110 72379379 72379110 ID=MsG0180004038.01.T01:cds;Parent=MsG0180004038.01.T01
Chr1 mRNA 72378817 72380946 72378817 ID=MsG0180004038.01.T02;Parent=MsG0180004038.01;Name=MsG0180004038.01.T02;_AED=0.32;_eAED=0.32;_QI=577|0.5|0.33|1|1|1|3|0|287
Chr1 exon 72378817 72379813 72378817 ID=MsG0180004038.01.T02:exon:31109;Parent=MsG0180004038.01.T02
Chr1 exon 72380438 72380493 72380438 ID=MsG0180004038.01.T02:exon:31110;Parent=MsG0180004038.01.T02
Chr1 exon 72380559 72380946 72380559 ID=MsG0180004038.01.T02:exon:31111;Parent=MsG0180004038.01.T02
Chr1 five_prime_UTR 72378817 72379393 72378817 ID=MsG0180004038.01.T02:five_prime_utr;Parent=MsG0180004038.01.T02
Chr1 CDS 72379394 72379813 72379394 ID=MsG0180004038.01.T02:cds;Parent=MsG0180004038.01.T02
Chr1 CDS 72380438 72380493 72380438 ID=MsG0180004038.01.T02:cds;Parent=MsG0180004038.01.T02
Chr1 CDS 72380559 72380946 72380559 ID=MsG0180004038.01.T02:cds;Parent=MsG0180004038.01.T02
Gene Sequence

>MsG0180004038.01.T02

ATGGAAGCAGCGAATCAAGCTAGGGTTGACGTGGCAGAAGCTAAGATGAAAGGTGAAGTTGGCTCGAAATCTAGGGAAGGGCAAACACTGCAGAATGCAGCAAAAATTGACGCGGAGACGAAAGTTATTGCTATGCAGAGAGCTGGAGAGAGTGACAAGGAGGGATTTAGAGTTAGGACTGAAGTGAAGGTTTTTGAGAATCAAAGAGAGGCTGAAGTGGCTGAGGCTAATTCTGAGTTGGCGAAGAAGAAAGCGGCTTGGACTAAGGCGGCTCAAGTGGCTGAAGTCGAGGCTGCTAAAGCTGTGGCTCTAAGGGAAGCCGAGTTGCAAGGTGAGGTTGAGAGGATGAATGCTTTGACTACTACTCAGAAGCTTAAAGCTGATTTACTTAGCAAAGCTAGTGTTGAGTATGAAACCAAGGTACAAGAGGCTAACTGGGAATTATACAAGAAACAGAAAGAAGCAGAAGCAATTCTCAAGCAGCTGAAGCAGAGCTATACGCAAAAAAAAGAGGCAGAAGGGATTGTGACACTTGGGAATGCTCAAGGAGTGTATGTAAATACACTTCTCAATGCACTTGGAAACGACTACACAGCTCTAAGGGATTACTTGATGATAAATGGTGGCATGTTTCAAGAGATGGCTAAGATCAATGCTGAGGCAGTACGTGGACTTGAACCTAAGATTAGTATTTGGACTAATGGAGGTGACAATGGAGGCGGAATAACGGAAGGTTCTATGGGCATGAAAGAGGTTGCTGGTGTTTACAAGATGCTGCCACCTCTGTTTAAGACTGTCCATGAGCAAACAGGCATGTTGCCTCCTGCTTGGATGGGAACCTTATCCGACAAAAGCTCTAATTAG

>MsG0180004038.01.T01

GTTGCACTATGGGAGTATCACGTTGAAGATCCTGCATTTATGCAACTGCTGAAACTAAAGTGGCGCACATATCATGTGCAGTACCACCCAGACGAGACACATTTGATATTGGGTACAGCTCTCAACAAGGAGATAGACAATGAGTTGAATAGGTATGTCATTTTAATCGATCCAGGACTCAATCAATTTGAGGTTGTCGTGGATAAATATGATGGAAAGCTATATTTCTCTCATGGAATAGAAGAACTGAACAAGGCCTATAAATTAGAGCATGGTGGCTGGATATCTCTGATCTATGCTTTCCCTCAACTTTTTGTGATTCGGGTTCACGATCGCCATAACAATGAAATCAAGTATCCGAGTTATCTCCCTCCTTTACGTTTAAGGCTAGCACAATTAATTTACGGTCCTAATGCAGCACCTGGATCTGTCCAGATCGACTACCCCGCTCCTTATCCCCACATATGCGACTGTTTTAAATTTAGTGTCATTAAATGGTTAACACTTGTAGATGTAACATCTGATCAACTGACTTTCTCCTATGCTAAAGTATTTGATAGCATCGTTGACAAGAATTGCAAAGAATTGCAATTATTGACGATAGCGGACATCATTGGTTGTTCAATGTGGGTAGCAAAAGCATCCGAGTACCTGGTGATAACCGGAGCTGGAATCGAAGACATCAAACTTGCAAAGAAATCATGGGTTTCCCTGGAAAGCCTCCTCAAATACGCTAAACTGATTTCACCTCATGATAAACTCTCGAATCATGTCAAGGAACTAGTTCAAGGAATCATCGAAGGGGAGACACGTGTCCTCGCTGCTTCGATGACCATGGAAGAGGTTTTCAGAGGAACAAAAGAGTTTAAACAAGAAGTATTCGAGAAAGTTCAACTCGAACTAAACCAATTCGGGTTATTGATTTACAATGCGAATGTTAAGCAATTGGTGGATGTGCCTGGTCATGAATATTCTCATATTTAG
Protein sequence

>MsG0180004038.01.T02

MEAANQARVDVAEAKMKGEVGSKSREGQTLQNAAKIDAETKVIAMQRAGESDKEGFRVRTEVKVFENQREAEVAEANSELAKKKAAWTKAAQVAEVEAAKAVALREAELQGEVERMNALTTTQKLKADLLSKASVEYETKVQEANWELYKKQKEAEAILKQLKQSYTQKKEAEGIVTLGNAQGVYVNTLLNALGNDYTALRDYLMINGGMFQEMAKINAEAVRGLEPKISIWTNGGDNGGGITEGSMGMKEVAGVYKMLPPLFKTVHEQTGMLPPAWMGTLSDKSSN*

>MsG0180004038.01.T01

VALWEYHVEDPAFMQLLKLKWRTYHVQYHPDETHLILGTALNKEIDNELNRYVILIDPGLNQFEVVVDKYDGKLYFSHGIEELNKAYKLEHGGWISLIYAFPQLFVIRVHDRHNNEIKYPSYLPPLRLRLAQLIYGPNAAPGSVQIDYPAPYPHICDCFKFSVIKWLTLVDVTSDQLTFSYAKVFDSIVDKNCKELQLLTIADIIGCSMWVAKASEYLVITGAGIEDIKLAKKSWVSLESLLKYAKLISPHDKLSNHVKELVQGIIEGETRVLAASMTMEEVFRGTKEFKQEVFEKVQLELNQFGLLIYNANVKQLVDVPGHEYSHI*