AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0180004243.01

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0180004243.01.T01 MTR_1g077840 98.971 680 7 0 1 680 1 680 0.0 1386
MsG0180004243.01.T01 MTR_3g092090 64.680 671 222 3 17 680 4 666 0.0 917
MsG0180004243.01.T01 MTR_3g092090 64.795 659 217 3 17 668 4 654 0.0 901
MsG0180004243.01.T01 MTR_1g007580 62.556 673 243 5 11 680 6 672 0.0 873
MsG0180004243.01.T01 MTR_0312s0020 61.782 662 248 4 23 680 12 672 0.0 862
MsG0180004243.01.T01 MTR_1g007540 61.782 662 248 4 23 680 12 672 0.0 862
MsG0180004243.01.T01 MTR_7g028250 53.521 639 288 5 46 677 37 673 0.0 727
MsG0180004243.01.T01 MTR_6g077870 51.794 641 294 7 47 679 66 699 0.0 712
MsG0180004243.01.T01 MTR_5g091600 51.274 667 312 7 22 679 7 669 0.0 704
MsG0180004243.01.T01 MTR_3g063490 53.052 639 291 5 47 679 48 683 0.0 697
MsG0180004243.01.T01 MTR_3g063520 52.426 639 295 5 47 679 42 677 0.0 672
MsG0180004243.01.T01 MTR_6g077870 51.402 535 251 6 153 679 5 538 0.0 597
MsG0180004243.01.T01 MTR_1626s0010 61.277 235 91 0 224 458 1 235 1.83e-102 312
MsG0180004243.01.T01 MTR_5g091615 56.291 151 65 1 530 679 59 209 1.34e-50 178
MsG0180004243.01.T01 MTR_0312s0050 74.699 83 21 0 47 129 38 120 1.57e-38 139
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0180004243.01.T01 AT4G24120 70.915 667 189 2 16 680 10 673 0.0 1001
MsG0180004243.01.T01 AT5G53550 64.318 667 232 4 16 680 9 671 0.0 908
MsG0180004243.01.T01 AT5G53550 64.318 667 232 4 16 680 9 671 0.0 908
MsG0180004243.01.T01 AT5G53550 64.318 667 232 4 16 680 9 671 0.0 908
MsG0180004243.01.T01 AT5G53550 64.318 667 232 4 16 680 9 671 0.0 908
MsG0180004243.01.T01 AT5G53550 64.318 667 232 4 16 680 9 671 0.0 908
MsG0180004243.01.T01 AT5G24380 63.514 666 231 4 20 680 5 663 0.0 900
MsG0180004243.01.T01 AT1G65730 52.353 680 299 9 19 679 1 674 0.0 729
MsG0180004243.01.T01 AT3G27020 51.194 670 312 6 20 677 4 670 0.0 720
MsG0180004243.01.T01 AT5G41000 51.940 670 314 4 18 680 2 670 0.0 720
MsG0180004243.01.T01 AT5G53550 64.579 511 178 2 171 680 1 509 0.0 711
MsG0180004243.01.T01 AT1G48370 52.359 657 292 7 40 680 59 710 0.0 686
MsG0180004243.01.T01 AT5G41000 50.526 665 306 4 18 680 2 645 0.0 682
MsG0180004243.01.T01 AT3G17650 50.685 657 304 7 39 680 49 700 0.0 677
MsG0180004243.01.T01 AT3G17650 50.685 657 304 7 39 680 49 700 0.0 677
MsG0180004243.01.T01 AT1G48370 52.505 539 242 5 156 680 9 547 0.0 570
MsG0180004243.01.T01 AT5G41000 51.717 495 231 4 193 680 1 494 0.0 534
MsG0180004243.01.T01 AT5G45450 48.558 208 100 2 474 680 1 202 8.85e-66 216

Find 176 sgRNAs with CRISPR-Local

Find 288 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TAATGTTCGACATTGCTTTA+TGG 0.147135 1:-75474358 None:intergenic
TCTTGTAAAATATGAATTAT+TGG 0.155138 1:+75475284 MsG0180004243.01.T01:three_prime_UTR
CTTGCATTCTGCAACGCTTT+TGG 0.182277 1:+75473610 MsG0180004243.01.T01:CDS
CATTGCTTGCAACTTTGTTT+TGG 0.185014 1:+75474012 MsG0180004243.01.T01:CDS
AGAATGTTTGAGCTTGTTTA+AGG 0.190142 1:-75473450 None:intergenic
TGACAAATAACACAGGTTTC+TGG 0.210672 1:+75474512 MsG0180004243.01.T01:three_prime_UTR
CTAAACATCAACATGGAATT+TGG 0.220436 1:+75471544 MsG0180004243.01.T01:CDS
AACCATCAACTCTGCTTTCT+TGG 0.226520 1:-75474208 None:intergenic
CTTGGAGCTGTGCTCTCTTA+TGG 0.235520 1:+75473074 MsG0180004243.01.T01:CDS
CAAGAGCAAGAACCATAAAA+AGG 0.240574 1:+75473280 MsG0180004243.01.T01:CDS
GCAGCAGAGACATTCAAATT+TGG 0.267639 1:-75471763 None:intergenic
AATGTTCGACATTGCTTTAT+GGG 0.269475 1:-75474357 None:intergenic
GAAGGGTTTATATGGTTATA+AGG 0.272710 1:+75473166 MsG0180004243.01.T01:CDS
AATTCCATGTTGATGTTTAG+TGG 0.292963 1:-75471541 None:intergenic
ACTAACATGAAGGGTTTATA+TGG 0.306840 1:+75473158 MsG0180004243.01.T01:CDS
ACAGAAACATGGCAGTTATA+GGG 0.308924 1:+75473962 MsG0180004243.01.T01:CDS
TCACACACAGGATGATAAAA+TGG 0.314433 1:+75472633 MsG0180004243.01.T01:CDS
CCTGCATTTGGTTGGATGTC+TGG 0.315025 1:+75472306 MsG0180004243.01.T01:CDS
TTTGAACAGTTTCCAACCTT+TGG 0.315680 1:+75472854 MsG0180004243.01.T01:CDS
CTGTCCAATGTTCATCAGAT+TGG 0.320759 1:-75471645 None:intergenic
ATTATTTCAGCTCCTATAAC+TGG 0.321331 1:-75471622 None:intergenic
TACAGAAACATGGCAGTTAT+AGG 0.321915 1:+75473961 MsG0180004243.01.T01:CDS
CAACAAAGCAAACAACAAAA+AGG 0.327369 1:-75472332 None:intergenic
CTCCAAGAAAGCAGAGTTGA+TGG 0.329189 1:+75474206 MsG0180004243.01.T01:CDS
CAACCTTTGGATTGCAAGCT+TGG 0.329374 1:+75472867 MsG0180004243.01.T01:CDS
CGATATGTGCACGGGTAGTT+TGG 0.340781 1:+75474158 MsG0180004243.01.T01:CDS
ACAAAGTACATAGTTGTAAA+AGG 0.352842 1:+75475237 MsG0180004243.01.T01:intron
TTTCTGTAAATTAGTGCATA+AGG 0.363611 1:-75473946 None:intergenic
GAAGAAAGGTTGCCAGTTAT+AGG 0.369530 1:+75471610 MsG0180004243.01.T01:CDS
TTGGAACCATTCCTGTTGTA+AGG 0.381075 1:-75471744 None:intergenic
TCGACATTGCTTTATGGGTT+GGG 0.382065 1:-75474352 None:intergenic
TTGCATCCGGACTAATTTGC+GGG 0.383280 1:+75474238 MsG0180004243.01.T01:CDS
GTATTAATGCCATTAGTATA+TGG 0.383869 1:-75474466 None:intergenic
CATCAAATGCTTTGTAGAAC+AGG 0.389070 1:-75473894 None:intergenic
TGGATCGGGGTAGTTGGATA+TGG 0.389113 1:+75473493 MsG0180004243.01.T01:CDS
GGATTTGCTTCTTACCTGTT+GGG 0.389382 1:+75472213 MsG0180004243.01.T01:CDS
TTCGACATTGCTTTATGGGT+TGG 0.392532 1:-75474353 None:intergenic
GTGAACTTGTCTCTGCTCCT+TGG 0.393687 1:+75473056 MsG0180004243.01.T01:CDS
ATTAGTCCGGATGCAATTGC+TGG 0.393834 1:-75474231 None:intergenic
GCATGTTTCCTCAGCTGAAA+TGG 0.394853 1:+75473551 MsG0180004243.01.T01:CDS
CTATCAATTGCTCTAATCCT+TGG 0.398456 1:+75473194 MsG0180004243.01.T01:CDS
TCTTATGGGGTTTCTTTAAG+TGG 0.406690 1:+75472804 MsG0180004243.01.T01:CDS
GCAACAGCGGTTCTCATCAA+TGG 0.408070 1:+75472607 MsG0180004243.01.T01:CDS
AGAGCATTCCAATGTGGATC+GGG 0.417671 1:+75473479 MsG0180004243.01.T01:CDS
ACAAGCTCAAACATTCTTGA+AGG 0.418237 1:+75473456 MsG0180004243.01.T01:CDS
TTGATGTTTAGTGGACTTGA+TGG 0.419351 1:-75471532 None:intergenic
GCAGTTAAAGAACCTGCATT+TGG 0.420611 1:+75472294 MsG0180004243.01.T01:CDS
CTTACCTGTTGGGATTAAAC+AGG 0.421340 1:+75472223 MsG0180004243.01.T01:CDS
CAGGTTCTTTAACTGCGCTT+GGG 0.424884 1:-75472287 None:intergenic
TTCTGTAAATTAGTGCATAA+GGG 0.426176 1:-75473945 None:intergenic
GCAGGTTCTTTAACTGCGCT+TGG 0.426747 1:-75472288 None:intergenic
AGGATTTGCTTCTTACCTGT+TGG 0.428296 1:+75472212 MsG0180004243.01.T01:CDS
AACAGCACAAGTCTGAATAA+TGG 0.434716 1:-75471875 None:intergenic
GACAGTTGAAACTAGAATCT+TGG 0.437254 1:-75473237 None:intergenic
TGGAATACAGTTCTTGCTGC+AGG 0.438378 1:+75474532 MsG0180004243.01.T01:three_prime_UTR
TCTTCCTGTTTAATCCCAAC+AGG 0.440272 1:-75472227 None:intergenic
TCGATCGGCGTAAAGGAAAC+TGG 0.440797 1:+75473114 MsG0180004243.01.T01:CDS
GCTTGTTTAAGGTCACCATT+TGG 0.442681 1:-75473439 None:intergenic
ATGGCAGTTATAGGGGTTCA+AGG 0.442747 1:+75473970 MsG0180004243.01.T01:CDS
ATCATGATTGTTCAGGGAAG+GGG 0.444645 1:-75474590 None:intergenic
ACAGAACACATAACAATAAG+AGG 0.457854 1:+75471664 MsG0180004243.01.T01:CDS
CCATCGCAGTGCCAACTACT+TGG 0.458126 1:-75473843 None:intergenic
TTCGAGCAAAGGCGCGGATA+CGG 0.458677 1:-75471299 None:intergenic
TATAGGGGTTCAAGGTTTCT+CGG 0.460745 1:+75473978 MsG0180004243.01.T01:CDS
AGGAAGACATATATATTGTC+TGG 0.461260 1:+75472243 MsG0180004243.01.T01:CDS
ATTCTAGTTTCAACTGTCCT+TGG 0.462241 1:+75473242 MsG0180004243.01.T01:CDS
ATTGCACACGCACCTCTCCC+AGG 0.462537 1:+75473806 MsG0180004243.01.T01:CDS
GGTGTAGTGGCAGCACTTGT+TGG 0.470788 1:+75473718 MsG0180004243.01.T01:CDS
CCGCTCGTCGATCGGCGTAA+AGG 0.473893 1:+75473107 MsG0180004243.01.T01:CDS
TTGGCATACGAACATCGCCC+TGG 0.477283 1:-75473824 None:intergenic
TCCTTCCCCGCAAATTAGTC+CGG 0.483208 1:-75474244 None:intergenic
TGTCTTAATTCCACTCAGAA+AGG 0.483712 1:+75472362 MsG0180004243.01.T01:CDS
CCAATGTGGATCGGGGTAGT+TGG 0.486909 1:+75473487 MsG0180004243.01.T01:CDS
AAGTATGCCCCTACCAGAAA+AGG 0.489539 1:-75474129 None:intergenic
CAAGCTTGCAATCCAAAGGT+TGG 0.490018 1:-75472866 None:intergenic
GTTGCAAAGCCACTTGGATA+AGG 0.490476 1:-75472589 None:intergenic
TGTTATAGCATTGCTGTTAG+CGG 0.491697 1:+75471901 MsG0180004243.01.T01:CDS
GTGGCAGCACTTGTTGGTTG+TGG 0.492912 1:+75473724 MsG0180004243.01.T01:CDS
ATGGTTCCAGCAATTGCATC+CGG 0.493010 1:+75474225 MsG0180004243.01.T01:CDS
ACTGTGACAGGAAAAGAAAA+TGG 0.493538 1:+75473697 MsG0180004243.01.T01:CDS
TCCGGACTAATTTGCGGGGA+AGG 0.496868 1:+75474243 MsG0180004243.01.T01:CDS
AATCATGATTGTTCAGGGAA+GGG 0.498688 1:-75474591 None:intergenic
ATAAACATGGCATATAACTA+CGG 0.499123 1:+75473649 MsG0180004243.01.T01:CDS
CAGAAACATGGCAGTTATAG+GGG 0.504777 1:+75473963 MsG0180004243.01.T01:CDS
TCGATTAAGTACTAAATCAA+AGG 0.505327 1:+75474635 MsG0180004243.01.T01:three_prime_UTR
TACGAACATCGCCCTGGGAG+AGG 0.508872 1:-75473818 None:intergenic
TTGTTTGTGAGTATGATGAT+TGG 0.510508 1:+75471688 MsG0180004243.01.T01:CDS
CAAGTAGTTGGCACTGCGAT+GGG 0.512978 1:+75473844 MsG0180004243.01.T01:CDS
CCAAGTAGTTGGCACTGCGA+TGG 0.514917 1:+75473843 MsG0180004243.01.T01:CDS
GAGAAAGAACAAATAAACTA+AGG 0.515796 1:+75471372 MsG0180004243.01.T01:five_prime_UTR
ATGGACTTATTATATAGTGT+GGG 0.516304 1:-75471275 None:intergenic
AAATCATGATTGTTCAGGGA+AGG 0.516846 1:-75474592 None:intergenic
ATGAAGCTGAACCTTACAAC+AGG 0.516868 1:+75471733 MsG0180004243.01.T01:CDS
CTTCCAAGCTTGCAATCCAA+AGG 0.518270 1:-75472870 None:intergenic
AGAACATTACCATATACTAA+TGG 0.518616 1:+75474457 MsG0180004243.01.T01:three_prime_UTR
TTAATCAGAACATGGAAGAA+AGG 0.519391 1:+75471596 MsG0180004243.01.T01:CDS
GCAAAGGCGCGGATACGGTA+TGG 0.521818 1:-75471294 None:intergenic
TTAAAGAACCTGCATTTGGT+TGG 0.523266 1:+75472298 MsG0180004243.01.T01:CDS
ACCGCTGTTGCAAAGCCACT+TGG 0.524230 1:-75472595 None:intergenic
CGATTAAGTACTAAATCAAA+GGG 0.525010 1:+75474636 MsG0180004243.01.T01:three_prime_UTR
TAGATGCTTTCTTCGAGCAA+AGG 0.525127 1:-75471310 None:intergenic
ATTGCATCCGGACTAATTTG+CGG 0.528699 1:+75474237 MsG0180004243.01.T01:CDS
CTTAGAAGAAACTAACATGA+AGG 0.531827 1:+75473148 MsG0180004243.01.T01:CDS
TAATCCAATCTGATGAACAT+TGG 0.534849 1:+75471641 MsG0180004243.01.T01:CDS
TTATGTATCCGCTCGTCGAT+CGG 0.538651 1:+75473099 MsG0180004243.01.T01:CDS
TCTCATTAAATCCGTGATCT+CGG 0.542009 1:+75473747 MsG0180004243.01.T01:CDS
TCTGTAAATTAGTGCATAAG+GGG 0.547725 1:-75473944 None:intergenic
TTGTCTGGAGTAGGCACTGA+GGG 0.548441 1:+75472258 MsG0180004243.01.T01:CDS
TAAACATGGCATATAACTAC+GGG 0.549716 1:+75473650 MsG0180004243.01.T01:CDS
TATGGACTTATTATATAGTG+TGG 0.549861 1:-75471276 None:intergenic
AAAGGTACGGCCATGACCAT+TGG 0.552599 1:-75474111 None:intergenic
CCAACTACCCCGATCCACAT+TGG 0.553126 1:-75473487 None:intergenic
TTCTACAAAGCATTTGATGT+GGG 0.553517 1:+75473898 MsG0180004243.01.T01:CDS
TCCAAGTGGCTTTGCAACAG+CGG 0.554986 1:+75472594 MsG0180004243.01.T01:CDS
GGGCTTTGAATTCTCCATGT+GGG 0.558789 1:-75473924 None:intergenic
GTAACAAATTTCATGCAGAT+AGG 0.560658 1:-75474315 None:intergenic
TTCTCAGGCAAAGAAGATTG+TGG 0.560939 1:+75472830 MsG0180004243.01.T01:CDS
ACGGCCATGACCATTGGTAA+TGG 0.563697 1:-75474105 None:intergenic
GAGAGCATTCCAATGTGGAT+CGG 0.564131 1:+75473478 MsG0180004243.01.T01:CDS
AGCAATGTCGAACATTAGCT+AGG 0.568216 1:+75474364 MsG0180004243.01.T01:three_prime_UTR
CTCAATTTACCTTATCCAAG+TGG 0.569415 1:+75472580 MsG0180004243.01.T01:CDS
CAAGAATTTCAGAATTTGTG+TGG 0.570772 1:-75475266 MsG0180004242.01.T01:three_prime_UTR
TTAGAAGAAACTAACATGAA+GGG 0.576320 1:+75473149 MsG0180004243.01.T01:CDS
CCAGACATCCAACCAAATGC+AGG 0.582970 1:-75472306 None:intergenic
CTTTGCAATCGATATGTGCA+CGG 0.585680 1:+75474149 MsG0180004243.01.T01:CDS
TGATTCTTTCATGTACGCCA+AGG 0.587279 1:-75473259 None:intergenic
TATTGCAGGAAGCAAGTGCA+TGG 0.588826 1:+75472755 MsG0180004243.01.T01:intron
GCTAGAGCAAGAATAGCAGC+AGG 0.590008 1:-75474279 None:intergenic
TGGCATACGAACATCGCCCT+GGG 0.590951 1:-75473823 None:intergenic
TTGCACACGCACCTCTCCCA+GGG 0.591980 1:+75473807 MsG0180004243.01.T01:CDS
CCTTTACGCCGATCGACGAG+CGG 0.592216 1:-75473107 None:intergenic
GCTTTCTTCGAGCAAAGGCG+CGG 0.592262 1:-75471305 None:intergenic
CACTTGGATAAGGTAAATTG+AGG 0.592998 1:-75472579 None:intergenic
GCAATGTCGAACATTAGCTA+GGG 0.594077 1:+75474365 MsG0180004243.01.T01:three_prime_UTR
GATGCCATTACCAATGGTCA+TGG 0.594138 1:+75474101 MsG0180004243.01.T01:CDS
GCGTTGCAGAATGCAAGAGA+TGG 0.596604 1:-75473604 None:intergenic
GTTCTACAAAGCATTTGATG+TGG 0.597381 1:+75473897 MsG0180004243.01.T01:CDS
ATTGCAAGACACCGAGATCA+CGG 0.597470 1:-75473758 None:intergenic
TGCCCCTACCAGAAAAGGTA+CGG 0.600276 1:-75474124 None:intergenic
CATAAGAGAGCACAGCTCCA+AGG 0.601707 1:-75473073 None:intergenic
GATCTGCACGGGAATCCAAA+TGG 0.602302 1:+75473424 MsG0180004243.01.T01:CDS
ACAAATTTCATGCAGATAGG+CGG 0.603089 1:-75474312 None:intergenic
TCAGCTGAGGAAACATGCGC+GGG 0.603914 1:-75473546 None:intergenic
TTAGCTGCTGATGATCTGCA+CGG 0.611628 1:+75473412 MsG0180004243.01.T01:CDS
ATTGCTCTAATCCTTGGTGA+TGG 0.613675 1:+75473200 MsG0180004243.01.T01:CDS
TAGCTGCTGATGATCTGCAC+GGG 0.614301 1:+75473413 MsG0180004243.01.T01:CDS
CAGAGACAAGTTCACAAGGT+GGG 0.617705 1:-75473048 None:intergenic
AGGAAAAGAAAATGGTGTAG+TGG 0.618420 1:+75473705 MsG0180004243.01.T01:CDS
ATGTTCGTATGCCAAGTAGT+TGG 0.622489 1:+75473832 MsG0180004243.01.T01:CDS
TGCACTAATTTACAGAAACA+TGG 0.622591 1:+75473951 MsG0180004243.01.T01:CDS
GCTGAACCTTACAACAGGAA+TGG 0.626965 1:+75471738 MsG0180004243.01.T01:CDS
ACATATATATTGTCTGGAGT+AGG 0.628251 1:+75472249 MsG0180004243.01.T01:CDS
TTCAGCTGAGGAAACATGCG+CGG 0.629166 1:-75473547 None:intergenic
GAAATGGATGCCATTACCAA+TGG 0.632319 1:+75474095 MsG0180004243.01.T01:CDS
TTTGCAATCGATATGTGCAC+GGG 0.633896 1:+75474150 MsG0180004243.01.T01:CDS
TTTGATGTGGGAAACCCACA+TGG 0.634234 1:+75473910 MsG0180004243.01.T01:CDS
TAATTTGCGGGGAAGGACTG+TGG 0.634672 1:+75474250 MsG0180004243.01.T01:CDS
ACATAGTACCATTTCAGCTG+AGG 0.638500 1:-75473559 None:intergenic
TAAATCAAAGGGATCAAACA+AGG 0.639257 1:+75474647 MsG0180004243.01.T01:three_prime_UTR
AAGAGATATTAATCAGAACA+TGG 0.647672 1:+75471588 MsG0180004243.01.T01:CDS
CAAAGTTGCAAGCAATGTCG+AGG 0.653267 1:-75474006 None:intergenic
GGAGCAGAGACAAGTTCACA+AGG 0.657179 1:-75473052 None:intergenic
TGCATCCGGACTAATTTGCG+GGG 0.661956 1:+75474239 MsG0180004243.01.T01:CDS
AAGTCCACTAAACATCAACA+TGG 0.666317 1:+75471537 MsG0180004243.01.T01:CDS
GAGCATTCCAATGTGGATCG+GGG 0.670545 1:+75473480 MsG0180004243.01.T01:CDS
AAGTAGTTGGCACTGCGATG+GGG 0.675338 1:+75473845 MsG0180004243.01.T01:CDS
AGAATTCTGACAAATAACAC+AGG 0.675707 1:+75474505 MsG0180004243.01.T01:three_prime_UTR
GGGGCTTTGAATTCTCCATG+TGG 0.676243 1:-75473925 None:intergenic
TGAAGGAGAGCATTCCAATG+TGG 0.677015 1:+75473473 MsG0180004243.01.T01:CDS
TAGAACAGGAAGAAGCTCAG+AGG 0.680521 1:-75473880 None:intergenic
AGGTCTCACTGATATAAACA+TGG 0.684403 1:+75473636 MsG0180004243.01.T01:CDS
TGGACTTATTATATAGTGTG+GGG 0.685196 1:-75471274 None:intergenic
GGACTACAAACCTTTCTGAG+TGG 0.685333 1:-75472372 None:intergenic
GCAGAGACAAGTTCACAAGG+TGG 0.689164 1:-75473049 None:intergenic
AAGTATATACGCCATCACCA+AGG 0.720711 1:-75473211 None:intergenic
ATTGTCTGGAGTAGGCACTG+AGG 0.727451 1:+75472257 MsG0180004243.01.T01:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TAAAAAAATTAAATTTTTTT+GGG - Chr1:75474903-75474922 None:intergenic 0.0%
!!! TTAAAAAAATTAAATTTTTT+TGG - Chr1:75474904-75474923 None:intergenic 0.0%
!! ACTAAAATAAACTTAAAAAT+AGG + Chr1:75475071-75475090 MsG0180004243.01.T01:intron 10.0%
!! CAAAAACATATAAAATTATA+AGG + Chr1:75474683-75474702 MsG0180004243.01.T01:intron 10.0%
!! CTAAAATAAACTTAAAAATA+GGG + Chr1:75475072-75475091 MsG0180004243.01.T01:intron 10.0%
!! ATCTTATATTATAATATTGC+AGG + Chr1:75472741-75472760 MsG0180004243.01.T01:intron 15.0%
!! TGCAATATTATAATATAAGA+TGG - Chr1:75472742-75472761 None:intergenic 15.0%
!! TTGTTACTAATCTTATTATT+TGG + Chr1:75472961-75472980 MsG0180004243.01.T01:intron 15.0%
!!! AAAAAGTTGGTATATTTATA+GGG - Chr1:75474727-75474746 None:intergenic 15.0%
!! AACAGTGACAAAAAAAAAAA+AGG - Chr1:75474393-75474412 None:intergenic 20.0%
!! ATATGAGTTTACTTTAAATG+AGG - Chr1:75474819-75474838 None:intergenic 20.0%
!! CATATTATATATAGTTGGTT+TGG + Chr1:75472916-75472935 MsG0180004243.01.T01:intron 20.0%
!! GAAAATGATAAATATGTAGT+AGG - Chr1:75471939-75471958 None:intergenic 20.0%
!! TATGAGTTTACTTTAAATGA+GGG - Chr1:75474818-75474837 None:intergenic 20.0%
!! TCAAGCATATTATATATAGT+TGG + Chr1:75472911-75472930 MsG0180004243.01.T01:intron 20.0%
!! TGAAAAATTCAAAAGAAGAA+AGG - Chr1:75473328-75473347 None:intergenic 20.0%
!! TTAAAAATCATGATTGTTCA+GGG - Chr1:75474599-75474618 None:intergenic 20.0%
!!! AAATTTTCAATCACTACTTT+TGG - Chr1:75475099-75475118 None:intergenic 20.0%
!!! ATAAGGGTTAAATATGTTTT+TGG + Chr1:75474700-75474719 MsG0180004243.01.T01:intron 20.0%
!!! ATCCAAAATTTTGTACAAAA+AGG - Chr1:75472414-75472433 None:intergenic 20.0%
!!! ATTTTTCAATCAGTTTCTTA+TGG + Chr1:75472789-75472808 MsG0180004243.01.T01:CDS 20.0%
!!! CAAAAAGTTGGTATATTTAT+AGG - Chr1:75474728-75474747 None:intergenic 20.0%
!!! GAAAAGTTGGTATATTTATA+GGG + Chr1:75475163-75475182 MsG0180004243.01.T01:intron 20.0%
!!! TAGTGATTGAAAATTTTACA+GGG + Chr1:75475103-75475122 MsG0180004243.01.T01:intron 20.0%
!!! TGAAGATGGAAAATTTTTTA+GGG - Chr1:75474787-75474806 None:intergenic 20.0%
!!! TTAATTAGACACTGAATTTT+TGG - Chr1:75472523-75472542 None:intergenic 20.0%
!!! TTTTTCAATCAGTTTCTTAT+GGG + Chr1:75472790-75472809 MsG0180004243.01.T01:CDS 20.0%
! AAGAGATATTAATCAGAACA+TGG + Chr1:75471588-75471607 MsG0180004243.01.T01:CDS 25.0%
! ACAAAGTACATAGTTGTAAA+AGG + Chr1:75475237-75475256 MsG0180004243.01.T01:intron 25.0%
! AGAACATTACCATATACTAA+TGG + Chr1:75474457-75474476 MsG0180004243.01.T01:three_prime_UTR 25.0%
! ATAAACATGGCATATAACTA+CGG + Chr1:75473649-75473668 MsG0180004243.01.T01:CDS 25.0%
! ATGGACTTATTATATAGTGT+GGG - Chr1:75471278-75471297 None:intergenic 25.0%
! CGATTAAGTACTAAATCAAA+GGG + Chr1:75474636-75474655 MsG0180004243.01.T01:three_prime_UTR 25.0%
! CTTAAAAATCATGATTGTTC+AGG - Chr1:75474600-75474619 None:intergenic 25.0%
! GAGAAAGAACAAATAAACTA+AGG + Chr1:75471372-75471391 MsG0180004243.01.T01:five_prime_UTR 25.0%
! GTATTAATGCCATTAGTATA+TGG - Chr1:75474469-75474488 None:intergenic 25.0%
! TAATATAGTAAAGTTGTGAC+AGG + Chr1:75471483-75471502 MsG0180004243.01.T01:intron 25.0%
! TATGGACTTATTATATAGTG+TGG - Chr1:75471279-75471298 None:intergenic 25.0%
! TCGATTAAGTACTAAATCAA+AGG + Chr1:75474635-75474654 MsG0180004243.01.T01:three_prime_UTR 25.0%
! TTAACCCAAATTATAAATGC+CGG + Chr1:75475199-75475218 MsG0180004243.01.T01:intron 25.0%
! TTAGAAGAAACTAACATGAA+GGG + Chr1:75473149-75473168 MsG0180004243.01.T01:CDS 25.0%
! TTCTGTAAATTAGTGCATAA+GGG - Chr1:75473948-75473967 None:intergenic 25.0%
! TTGTGCAATTTGGAAAATAA+AGG + Chr1:75472701-75472720 MsG0180004243.01.T01:intron 25.0%
! TTTACAACTATGTACTTTGT+TGG - Chr1:75475237-75475256 None:intergenic 25.0%
! TTTCTGTAAATTAGTGCATA+AGG - Chr1:75473949-75473968 None:intergenic 25.0%
! TTTGTAGTCCTATAATACTT+TGG + Chr1:75472385-75472404 MsG0180004243.01.T01:intron 25.0%
!! AAATTTTCCATCTTCACTTT+TGG + Chr1:75474791-75474810 MsG0180004243.01.T01:intron 25.0%
!! ATTTTTCACCCAAAAAGATT+GGG + Chr1:75474073-75474092 MsG0180004243.01.T01:CDS 25.0%
!! CTCCTTTTTGTACAAAATTT+TGG + Chr1:75472409-75472428 MsG0180004243.01.T01:intron 25.0%
!! GTAGTGATTGAAAATTTTAC+AGG + Chr1:75475102-75475121 MsG0180004243.01.T01:intron 25.0%
!! TAGTTTCTTCTAAGTTTTCA+GGG - Chr1:75473142-75473161 None:intergenic 25.0%
!! TCTGAATAATGGTATTTTCT+TGG - Chr1:75471867-75471886 None:intergenic 25.0%
!! TTAGTTTCTTCTAAGTTTTC+AGG - Chr1:75473143-75473162 None:intergenic 25.0%
!! TTTTCAATCAGTTTCTTATG+GGG + Chr1:75472791-75472810 MsG0180004243.01.T01:CDS 25.0%
!!! AAGTTGAAGGAAATTTTTAG+AGG - Chr1:75474759-75474778 None:intergenic 25.0%
!!! AGTTGAAGGAAATTTTTAGA+GGG - Chr1:75474758-75474777 None:intergenic 25.0%
!!! CGAAAAGTTGGTATATTTAT+AGG + Chr1:75475162-75475181 MsG0180004243.01.T01:intron 25.0%
!!! GTGAAGATGGAAAATTTTTT+AGG - Chr1:75474788-75474807 None:intergenic 25.0%
!!! GTTTTTCTGTTAGTTTTGTT+GGG - Chr1:75474571-75474590 None:intergenic 25.0%
!!! TAACTTTTGTTTGTGCAATT+TGG + Chr1:75472691-75472710 MsG0180004243.01.T01:intron 25.0%
!!! TTTTTCTGTTAGTTTTGTTG+GGG - Chr1:75474570-75474589 None:intergenic 25.0%
!!! TTTTTTTTTGTCACTGTTTG+TGG + Chr1:75474395-75474414 MsG0180004243.01.T01:three_prime_UTR 25.0%
AAGAGCAAGAACCATAAAAA+GGG + Chr1:75473281-75473300 MsG0180004243.01.T01:CDS 30.0%
AATCAGATCATGTTCAAGTA+AGG + Chr1:75472027-75472046 MsG0180004243.01.T01:intron 30.0%
AATGTTCGACATTGCTTTAT+GGG - Chr1:75474360-75474379 None:intergenic 30.0%
AATTCCATGTTGATGTTTAG+TGG - Chr1:75471544-75471563 None:intergenic 30.0%
ACAGAACACATAACAATAAG+AGG + Chr1:75471664-75471683 MsG0180004243.01.T01:CDS 30.0%
ACTAACATGAAGGGTTTATA+TGG + Chr1:75473158-75473177 MsG0180004243.01.T01:CDS 30.0%
AGAATTCTGACAAATAACAC+AGG + Chr1:75474505-75474524 MsG0180004243.01.T01:three_prime_UTR 30.0%
AGGAAGACATATATATTGTC+TGG + Chr1:75472243-75472262 MsG0180004243.01.T01:CDS 30.0%
ATTATTTCAGCTCCTATAAC+TGG - Chr1:75471625-75471644 None:intergenic 30.0%
CAACAAAGCAAACAACAAAA+AGG - Chr1:75472335-75472354 None:intergenic 30.0%
CAAGAATTTCAGAATTTGTG+TGG - Chr1:75475269-75475288 MsG0180004242.01.T01:three_prime_UTR 30.0%
CTAAACATCAACATGGAATT+TGG + Chr1:75471544-75471563 MsG0180004243.01.T01:CDS 30.0%
CTTAGAAGAAACTAACATGA+AGG + Chr1:75473148-75473167 MsG0180004243.01.T01:CDS 30.0%
GAAGAGATGTTTATAGTACT+TGG - Chr1:75472659-75472678 None:intergenic 30.0%
GAAGGGTTTATATGGTTATA+AGG + Chr1:75473166-75473185 MsG0180004243.01.T01:CDS 30.0%
GGAATTTGGAGAGAAAAAAA+TGG + Chr1:75471558-75471577 MsG0180004243.01.T01:CDS 30.0%
GTAACAAATTTCATGCAGAT+AGG - Chr1:75474318-75474337 None:intergenic 30.0%
TAAACATGGCATATAACTAC+GGG + Chr1:75473650-75473669 MsG0180004243.01.T01:CDS 30.0%
TAAATCAAAGGGATCAAACA+AGG + Chr1:75474647-75474666 MsG0180004243.01.T01:three_prime_UTR 30.0%
TAATCCAATCTGATGAACAT+TGG + Chr1:75471641-75471660 MsG0180004243.01.T01:CDS 30.0%
TAATGTTCGACATTGCTTTA+TGG - Chr1:75474361-75474380 None:intergenic 30.0%
TCTGTAAATTAGTGCATAAG+GGG - Chr1:75473947-75473966 None:intergenic 30.0%
TGCACTAATTTACAGAAACA+TGG + Chr1:75473951-75473970 MsG0180004243.01.T01:CDS 30.0%
TGGACTTATTATATAGTGTG+GGG - Chr1:75471277-75471296 None:intergenic 30.0%
TTAATCAGAACATGGAAGAA+AGG + Chr1:75471596-75471615 MsG0180004243.01.T01:CDS 30.0%
TTCGTTAGAAATCAATGACA+CGG + Chr1:75471982-75472001 MsG0180004243.01.T01:intron 30.0%
TTGTTTGTGAGTATGATGAT+TGG + Chr1:75471688-75471707 MsG0180004243.01.T01:CDS 30.0%
! AAAGGAGTCCAAAGTATTAT+AGG - Chr1:75472396-75472415 None:intergenic 30.0%
! AAGTCGAAGGAAAATTTTAG+AGG + Chr1:75475131-75475150 MsG0180004243.01.T01:intron 30.0%
! ACATATATATTGTCTGGAGT+AGG + Chr1:75472249-75472268 MsG0180004243.01.T01:CDS 30.0%
! AGAATGTTTGAGCTTGTTTA+AGG - Chr1:75473453-75473472 None:intergenic 30.0%
! AGTCGAAGGAAAATTTTAGA+GGG + Chr1:75475132-75475151 MsG0180004243.01.T01:intron 30.0%
! ATAGTTGATACATCAGACAA+AGG - Chr1:75471456-75471475 None:intergenic 30.0%
! ATCCATTTCCCAATCTTTTT+GGG - Chr1:75474084-75474103 None:intergenic 30.0%
! CTTTTGTCTTTGTAAGAAGT+TGG + Chr1:75471794-75471813 MsG0180004243.01.T01:CDS 30.0%
! GATTTTTCACCCAAAAAGAT+TGG + Chr1:75474072-75474091 MsG0180004243.01.T01:CDS 30.0%
! TACGTTCTTTACCCTTTTTA+TGG - Chr1:75473295-75473314 None:intergenic 30.0%
! TCTTTTTCTTTCCATCTTTC+AGG + Chr1:75472439-75472458 MsG0180004243.01.T01:intron 30.0%
! TTCTACAAAGCATTTGATGT+GGG + Chr1:75473898-75473917 MsG0180004243.01.T01:CDS 30.0%
! TTCTTTAAGTGGTTTTTCTC+AGG + Chr1:75472815-75472834 MsG0180004243.01.T01:CDS 30.0%
!! CTTTTAAAAGTCCTGAAAGA+TGG - Chr1:75472453-75472472 None:intergenic 30.0%
!! GTCATTGATTTCTAACGAAA+CGG - Chr1:75471981-75472000 None:intergenic 30.0%
!! TTTTAGGGACTAAAAGTTGA+AGG - Chr1:75474772-75474791 None:intergenic 30.0%
!!! ATTGCTTGCAACTTTGTTTT+GGG + Chr1:75474013-75474032 MsG0180004243.01.T01:CDS 30.0%
!!! CTTTTTGTTGTTTGCTTTGT+TGG + Chr1:75472333-75472352 MsG0180004243.01.T01:CDS 30.0%
!!! GGTTTTTCTGTTAGTTTTGT+TGG - Chr1:75474572-75474591 None:intergenic 30.0%
!!! TTTTCTGTTAGTTTTGTTGG+GGG - Chr1:75474569-75474588 None:intergenic 30.0%
AAATCATGATTGTTCAGGGA+AGG - Chr1:75474595-75474614 None:intergenic 35.0%
AACAGCACAAGTCTGAATAA+TGG - Chr1:75471878-75471897 None:intergenic 35.0%
AAGTCCACTAAACATCAACA+TGG + Chr1:75471537-75471556 MsG0180004243.01.T01:CDS 35.0%
AATCATGATTGTTCAGGGAA+GGG - Chr1:75474594-75474613 None:intergenic 35.0%
ACAAATTTCATGCAGATAGG+CGG - Chr1:75474315-75474334 None:intergenic 35.0%
ACAAGCTCAAACATTCTTGA+AGG + Chr1:75473456-75473475 MsG0180004243.01.T01:CDS 35.0%
ACAGAAACATGGCAGTTATA+GGG + Chr1:75473962-75473981 MsG0180004243.01.T01:CDS 35.0%
ACTGTGACAGGAAAAGAAAA+TGG + Chr1:75473697-75473716 MsG0180004243.01.T01:CDS 35.0%
AGGAAAAGAAAATGGTGTAG+TGG + Chr1:75473705-75473724 MsG0180004243.01.T01:CDS 35.0%
AGGTCTCACTGATATAAACA+TGG + Chr1:75473636-75473655 MsG0180004243.01.T01:CDS 35.0%
ATCATCAGCAGCTAATTCTA+AGG - Chr1:75473407-75473426 None:intergenic 35.0%
CAAGAGCAAGAACCATAAAA+AGG + Chr1:75473280-75473299 MsG0180004243.01.T01:CDS 35.0%
CACACCGGCATTTATAATTT+GGG - Chr1:75475206-75475225 None:intergenic 35.0%
CACTTGGATAAGGTAAATTG+AGG - Chr1:75472582-75472601 None:intergenic 35.0%
CATCAAATGCTTTGTAGAAC+AGG - Chr1:75473897-75473916 None:intergenic 35.0%
CTATCAATTGCTCTAATCCT+TGG + Chr1:75473194-75473213 MsG0180004243.01.T01:CDS 35.0%
CTCAATTTACCTTATCCAAG+TGG + Chr1:75472580-75472599 MsG0180004243.01.T01:CDS 35.0%
GACAGTTGAAACTAGAATCT+TGG - Chr1:75473240-75473259 None:intergenic 35.0%
GAGGGACTAAAACAAAAAGT+TGG - Chr1:75474740-75474759 None:intergenic 35.0%
TACAGAAACATGGCAGTTAT+AGG + Chr1:75473961-75473980 MsG0180004243.01.T01:CDS 35.0%
TCACACACAGGATGATAAAA+TGG + Chr1:75472633-75472652 MsG0180004243.01.T01:CDS 35.0%
TCGTTAATGAGATTCAGCTA+AGG + Chr1:75472091-75472110 MsG0180004243.01.T01:intron 35.0%
TCTCATTAAATCCGTGATCT+CGG + Chr1:75473747-75473766 MsG0180004243.01.T01:CDS 35.0%
TCTTATGGGGTTTCTTTAAG+TGG + Chr1:75472804-75472823 MsG0180004243.01.T01:CDS 35.0%
TGACAAATAACACAGGTTTC+TGG + Chr1:75474512-75474531 MsG0180004243.01.T01:three_prime_UTR 35.0%
TGTCTTAATTCCACTCAGAA+AGG + Chr1:75472362-75472381 MsG0180004243.01.T01:CDS 35.0%
TTAAAGAACCTGCATTTGGT+TGG + Chr1:75472298-75472317 MsG0180004243.01.T01:CDS 35.0%
TTTGAACAGTTTCCAACCTT+TGG + Chr1:75472854-75472873 MsG0180004243.01.T01:CDS 35.0%
! ACTAAAGTGCTTGAAAAAGC+TGG + Chr1:75471817-75471836 MsG0180004243.01.T01:CDS 35.0%
! CATCCATTTCCCAATCTTTT+TGG - Chr1:75474085-75474104 None:intergenic 35.0%
! GTTCTACAAAGCATTTGATG+TGG + Chr1:75473897-75473916 MsG0180004243.01.T01:CDS 35.0%
! TGTTATAGCATTGCTGTTAG+CGG + Chr1:75471901-75471920 MsG0180004243.01.T01:CDS 35.0%
!! ATTCTAGTTTCAACTGTCCT+TGG + Chr1:75473242-75473261 MsG0180004243.01.T01:CDS 35.0%
!! CATTGCTTGCAACTTTGTTT+TGG + Chr1:75474012-75474031 MsG0180004243.01.T01:CDS 35.0%
!! GATTTTAGCACGACTTTTGT+GGG + Chr1:75473008-75473027 MsG0180004243.01.T01:CDS 35.0%
!! TTGATGTTTAGTGGACTTGA+TGG - Chr1:75471535-75471554 None:intergenic 35.0%
!!! CAACTTTGTTTTGGGTTCTT+TGG + Chr1:75474021-75474040 MsG0180004243.01.T01:CDS 35.0%
!!! GAAAGTTGCACTATTTTTGC+TGG + Chr1:75473672-75473691 MsG0180004243.01.T01:CDS 35.0%
!!! TTTCTGTTAGTTTTGTTGGG+GGG - Chr1:75474568-75474587 None:intergenic 35.0%
AACCATCAACTCTGCTTTCT+TGG - Chr1:75474211-75474230 None:intergenic 40.0%
AAGTATATACGCCATCACCA+AGG - Chr1:75473214-75473233 None:intergenic 40.0%
ACATAGTACCATTTCAGCTG+AGG - Chr1:75473562-75473581 None:intergenic 40.0%
AGCAATGTCGAACATTAGCT+AGG + Chr1:75474364-75474383 MsG0180004243.01.T01:three_prime_UTR 40.0%
ATCATGATTGTTCAGGGAAG+GGG - Chr1:75474593-75474612 None:intergenic 40.0%
ATGAAGCTGAACCTTACAAC+AGG + Chr1:75471733-75471752 MsG0180004243.01.T01:CDS 40.0%
ATGTTCGTATGCCAAGTAGT+TGG + Chr1:75473832-75473851 MsG0180004243.01.T01:CDS 40.0%
ATTGCATCCGGACTAATTTG+CGG + Chr1:75474237-75474256 MsG0180004243.01.T01:CDS 40.0%
ATTGCTCTAATCCTTGGTGA+TGG + Chr1:75473200-75473219 MsG0180004243.01.T01:CDS 40.0%
CACCCAAAAAGATTGGGAAA+TGG + Chr1:75474079-75474098 MsG0180004243.01.T01:CDS 40.0%
CAGAAACATGGCAGTTATAG+GGG + Chr1:75473963-75473982 MsG0180004243.01.T01:CDS 40.0%
CCAAATTATAAATGCCGGTG+TGG + Chr1:75475204-75475223 MsG0180004243.01.T01:intron 40.0%
CCACACCGGCATTTATAATT+TGG - Chr1:75475207-75475226 None:intergenic 40.0%
CTGTCCAATGTTCATCAGAT+TGG - Chr1:75471648-75471667 None:intergenic 40.0%
CTTACCTGTTGGGATTAAAC+AGG + Chr1:75472223-75472242 MsG0180004243.01.T01:CDS 40.0%
CTTTGCAATCGATATGTGCA+CGG + Chr1:75474149-75474168 MsG0180004243.01.T01:CDS 40.0%
GAAATGGATGCCATTACCAA+TGG + Chr1:75474095-75474114 MsG0180004243.01.T01:CDS 40.0%
GAAGAAAGGTTGCCAGTTAT+AGG + Chr1:75471610-75471629 MsG0180004243.01.T01:CDS 40.0%
GAGGGACTAAAACGAAAAGT+TGG + Chr1:75475150-75475169 MsG0180004243.01.T01:intron 40.0%
GCAATGTCGAACATTAGCTA+GGG + Chr1:75474365-75474384 MsG0180004243.01.T01:three_prime_UTR 40.0%
GCAGCAGAGACATTCAAATT+TGG - Chr1:75471766-75471785 None:intergenic 40.0%
GCAGTTAAAGAACCTGCATT+TGG + Chr1:75472294-75472313 MsG0180004243.01.T01:CDS 40.0%
GCGCAAATTAATCCAGAGTT+CGG - Chr1:75472176-75472195 None:intergenic 40.0%
TAATCCAGAGTTCGGTTAAG+AGG - Chr1:75472168-75472187 None:intergenic 40.0%
TAGATGCTTTCTTCGAGCAA+AGG - Chr1:75471313-75471332 None:intergenic 40.0%
TATAGGGGTTCAAGGTTTCT+CGG + Chr1:75473978-75473997 MsG0180004243.01.T01:CDS 40.0%
TCGACATTGCTTTATGGGTT+GGG - Chr1:75474355-75474374 None:intergenic 40.0%
TCTTCCTGTTTAATCCCAAC+AGG - Chr1:75472230-75472249 None:intergenic 40.0%
TGATTCTTTCATGTACGCCA+AGG - Chr1:75473262-75473281 None:intergenic 40.0%
TTACAGGGACTAAAAGTCGA+AGG + Chr1:75475118-75475137 MsG0180004243.01.T01:intron 40.0%
TTCGACATTGCTTTATGGGT+TGG - Chr1:75474356-75474375 None:intergenic 40.0%
TTCTCAGGCAAAGAAGATTG+TGG + Chr1:75472830-75472849 MsG0180004243.01.T01:CDS 40.0%
TTGGAACCATTCCTGTTGTA+AGG - Chr1:75471747-75471766 None:intergenic 40.0%
TTTGCAATCGATATGTGCAC+GGG + Chr1:75474150-75474169 MsG0180004243.01.T01:CDS 40.0%
! AGGATTTGCTTCTTACCTGT+TGG + Chr1:75472212-75472231 MsG0180004243.01.T01:CDS 40.0%
! CATCAATGGTTTTCACACAC+AGG + Chr1:75472621-75472640 MsG0180004243.01.T01:CDS 40.0%
! GCTTGTTTAAGGTCACCATT+TGG - Chr1:75473442-75473461 None:intergenic 40.0%
! GGATTTGCTTCTTACCTGTT+GGG + Chr1:75472213-75472232 MsG0180004243.01.T01:CDS 40.0%
! GTATTTTCTTGGCGAGTGAA+TGG - Chr1:75471856-75471875 None:intergenic 40.0%
! GTTGCACATTTTTCTGATGC+AGG + Chr1:75472543-75472562 MsG0180004243.01.T01:intron 40.0%
!! CGATTTTAGCACGACTTTTG+TGG + Chr1:75473007-75473026 MsG0180004243.01.T01:CDS 40.0%
!!! GGGTTCTTTGGTTTTGCAAT+AGG + Chr1:75474033-75474052 MsG0180004243.01.T01:CDS 40.0%
AAGTATGCCCCTACCAGAAA+AGG - Chr1:75474132-75474151 None:intergenic 45.0%
ATGGCAGTTATAGGGGTTCA+AGG + Chr1:75473970-75473989 MsG0180004243.01.T01:CDS 45.0%
ATGGTTCCAGCAATTGCATC+CGG + Chr1:75474225-75474244 MsG0180004243.01.T01:CDS 45.0%
ATTAGTCCGGATGCAATTGC+TGG - Chr1:75474234-75474253 None:intergenic 45.0%
ATTGCAAGACACCGAGATCA+CGG - Chr1:75473761-75473780 None:intergenic 45.0%
CAAAGTTGCAAGCAATGTCG+AGG - Chr1:75474009-75474028 None:intergenic 45.0%
CAACCTTTGGATTGCAAGCT+TGG + Chr1:75472867-75472886 MsG0180004243.01.T01:CDS 45.0%
CAAGCTTGCAATCCAAAGGT+TGG - Chr1:75472869-75472888 None:intergenic 45.0%
CAGAGACAAGTTCACAAGGT+GGG - Chr1:75473051-75473070 None:intergenic 45.0%
CAGGTTCTTTAACTGCGCTT+GGG - Chr1:75472290-75472309 None:intergenic 45.0%
CTCCAAGAAAGCAGAGTTGA+TGG + Chr1:75474206-75474225 MsG0180004243.01.T01:CDS 45.0%
CTTACCTCTTAACCGAACTC+TGG + Chr1:75472161-75472180 MsG0180004243.01.T01:intron 45.0%
CTTCCAAGCTTGCAATCCAA+AGG - Chr1:75472873-75472892 None:intergenic 45.0%
GATGCCATTACCAATGGTCA+TGG + Chr1:75474101-75474120 MsG0180004243.01.T01:CDS 45.0%
GCATGTTTCCTCAGCTGAAA+TGG + Chr1:75473551-75473570 MsG0180004243.01.T01:CDS 45.0%
GCTGAACCTTACAACAGGAA+TGG + Chr1:75471738-75471757 MsG0180004243.01.T01:CDS 45.0%
GGACTACAAACCTTTCTGAG+TGG - Chr1:75472375-75472394 None:intergenic 45.0%
GTTGCAAAGCCACTTGGATA+AGG - Chr1:75472592-75472611 None:intergenic 45.0%
TAGAACAGGAAGAAGCTCAG+AGG - Chr1:75473883-75473902 None:intergenic 45.0%
TATTGCAGGAAGCAAGTGCA+TGG + Chr1:75472755-75472774 MsG0180004243.01.T01:intron 45.0%
TGAGGGACCAAAAGTGAAGA+TGG - Chr1:75474801-75474820 None:intergenic 45.0%
TGGAATACAGTTCTTGCTGC+AGG + Chr1:75474532-75474551 MsG0180004243.01.T01:three_prime_UTR 45.0%
TTAGCTGCTGATGATCTGCA+CGG + Chr1:75473412-75473431 MsG0180004243.01.T01:CDS 45.0%
TTATGTATCCGCTCGTCGAT+CGG + Chr1:75473099-75473118 MsG0180004243.01.T01:CDS 45.0%
TTTGATGTGGGAAACCCACA+TGG + Chr1:75473910-75473929 MsG0180004243.01.T01:CDS 45.0%
! AGAGCATTCCAATGTGGATC+GGG + Chr1:75473479-75473498 MsG0180004243.01.T01:CDS 45.0%
! CTTGCATTCTGCAACGCTTT+TGG + Chr1:75473610-75473629 MsG0180004243.01.T01:CDS 45.0%
! TAGCATTGCTGTTAGCGGTA+AGG + Chr1:75471906-75471925 MsG0180004243.01.T01:intron 45.0%
! TTGCATCCGGACTAATTTGC+GGG + Chr1:75474238-75474257 MsG0180004243.01.T01:CDS 45.0%
! TTTTTGCTGGCAACTGTGAC+AGG + Chr1:75473685-75473704 MsG0180004243.01.T01:CDS 45.0%
!! GAGAGCATTCCAATGTGGAT+CGG + Chr1:75473478-75473497 MsG0180004243.01.T01:CDS 45.0%
!! GGGCTTTGAATTCTCCATGT+GGG - Chr1:75473927-75473946 None:intergenic 45.0%
!! TGAAGGAGAGCATTCCAATG+TGG + Chr1:75473473-75473492 MsG0180004243.01.T01:CDS 45.0%
!! AAAAACATATAAAATTATAA+GGG + Chr1:75474684-75474703 MsG0180004243.01.T01:intron 5.0%
!! AATTAATTAATATTAGATAT+TGG + Chr1:75472486-75472505 MsG0180004243.01.T01:intron 5.0%
!! ATAATACTAATATTAATATA+TGG + Chr1:75473351-75473370 MsG0180004243.01.T01:intron 5.0%
!! TAATACTAATATTAATATAT+GGG + Chr1:75473352-75473371 MsG0180004243.01.T01:intron 5.0%
!!! AAAAATTCTAATTTTTTTTT+TGG + Chr1:75474996-75475015 MsG0180004243.01.T01:intron 5.0%
!!! ATGAATTTTTATATTTTTTA+TGG + Chr1:75474941-75474960 MsG0180004243.01.T01:intron 5.0%
AAGTAGTTGGCACTGCGATG+GGG + Chr1:75473845-75473864 MsG0180004243.01.T01:CDS 50.0%
ACGGCCATGACCATTGGTAA+TGG - Chr1:75474108-75474127 None:intergenic 50.0%
CAAGTAGTTGGCACTGCGAT+GGG + Chr1:75473844-75473863 MsG0180004243.01.T01:CDS 50.0%
CCAGACATCCAACCAAATGC+AGG - Chr1:75472309-75472328 None:intergenic 50.0%
CCTGCATTTGGTTGGATGTC+TGG + Chr1:75472306-75472325 MsG0180004243.01.T01:CDS 50.0%
CGATATGTGCACGGGTAGTT+TGG + Chr1:75474158-75474177 MsG0180004243.01.T01:CDS 50.0%
CTTGGAGCTGTGCTCTCTTA+TGG + Chr1:75473074-75473093 MsG0180004243.01.T01:CDS 50.0%
GAGCATTCCAATGTGGATCG+GGG + Chr1:75473480-75473499 MsG0180004243.01.T01:CDS 50.0%
GATCTGCACGGGAATCCAAA+TGG + Chr1:75473424-75473443 MsG0180004243.01.T01:CDS 50.0%
GCAACAGCGGTTCTCATCAA+TGG + Chr1:75472607-75472626 MsG0180004243.01.T01:CDS 50.0%
GCAGAGACAAGTTCACAAGG+TGG - Chr1:75473052-75473071 None:intergenic 50.0%
GCAGGTTCTTTAACTGCGCT+TGG - Chr1:75472291-75472310 None:intergenic 50.0%
GCGTTGCAGAATGCAAGAGA+TGG - Chr1:75473607-75473626 None:intergenic 50.0%
GCTAGAGCAAGAATAGCAGC+AGG - Chr1:75474282-75474301 None:intergenic 50.0%
GGAGCAGAGACAAGTTCACA+AGG - Chr1:75473055-75473074 None:intergenic 50.0%
GTGAACTTGTCTCTGCTCCT+TGG + Chr1:75473056-75473075 MsG0180004243.01.T01:CDS 50.0%
GTGTAGTCGAGTTCGATCTC+TGG + Chr1:75472129-75472148 MsG0180004243.01.T01:intron 50.0%
TAGCTGCTGATGATCTGCAC+GGG + Chr1:75473413-75473432 MsG0180004243.01.T01:CDS 50.0%
TCCTTCCCCGCAAATTAGTC+CGG - Chr1:75474247-75474266 None:intergenic 50.0%
TCGATCGGCGTAAAGGAAAC+TGG + Chr1:75473114-75473133 MsG0180004243.01.T01:CDS 50.0%
TGCCCCTACCAGAAAAGGTA+CGG - Chr1:75474127-75474146 None:intergenic 50.0%
TGGATCGGGGTAGTTGGATA+TGG + Chr1:75473493-75473512 MsG0180004243.01.T01:CDS 50.0%
TTCAGCTGAGGAAACATGCG+CGG - Chr1:75473550-75473569 None:intergenic 50.0%
TTTGCGCTTGTGTGTGTTGC+AGG + Chr1:75472189-75472208 MsG0180004243.01.T01:intron 50.0%
! AAAGGTACGGCCATGACCAT+TGG - Chr1:75474114-75474133 None:intergenic 50.0%
! ATTGTCTGGAGTAGGCACTG+AGG + Chr1:75472257-75472276 MsG0180004243.01.T01:CDS 50.0%
! CATAAGAGAGCACAGCTCCA+AGG - Chr1:75473076-75473095 None:intergenic 50.0%
! TAATTTGCGGGGAAGGACTG+TGG + Chr1:75474250-75474269 MsG0180004243.01.T01:CDS 50.0%
! TCCAAGTGGCTTTGCAACAG+CGG + Chr1:75472594-75472613 MsG0180004243.01.T01:CDS 50.0%
! TGCATCCGGACTAATTTGCG+GGG + Chr1:75474239-75474258 MsG0180004243.01.T01:CDS 50.0%
! TTGTTGGTGCTTGTCCACAC+CGG - Chr1:75475221-75475240 None:intergenic 50.0%
!! ATGGCCGTACCTTTTCTGGT+AGG + Chr1:75474120-75474139 MsG0180004243.01.T01:CDS 50.0%
!! GGGGCTTTGAATTCTCCATG+TGG - Chr1:75473928-75473947 None:intergenic 50.0%
!! TGGCCGTACCTTTTCTGGTA+GGG + Chr1:75474121-75474140 MsG0180004243.01.T01:CDS 50.0%
!! TTGTCTGGAGTAGGCACTGA+GGG + Chr1:75472258-75472277 MsG0180004243.01.T01:CDS 50.0%
!!! TTCTGCAACGCTTTTGGAGC+AGG + Chr1:75473616-75473635 MsG0180004243.01.T01:CDS 50.0%
ACCGCTGTTGCAAAGCCACT+TGG - Chr1:75472598-75472617 None:intergenic 55.0%
CCAACTACCCCGATCCACAT+TGG - Chr1:75473490-75473509 None:intergenic 55.0%
CCAAGTAGTTGGCACTGCGA+TGG + Chr1:75473843-75473862 MsG0180004243.01.T01:CDS 55.0%
CCAATGTGGATCGGGGTAGT+TGG + Chr1:75473487-75473506 MsG0180004243.01.T01:CDS 55.0%
CCATCGCAGTGCCAACTACT+TGG - Chr1:75473846-75473865 None:intergenic 55.0%
GCTTTCTTCGAGCAAAGGCG+CGG - Chr1:75471308-75471327 None:intergenic 55.0%
GGTGTAGTGGCAGCACTTGT+TGG + Chr1:75473718-75473737 MsG0180004243.01.T01:CDS 55.0%
TCAGCTGAGGAAACATGCGC+GGG - Chr1:75473549-75473568 None:intergenic 55.0%
TGGCATACGAACATCGCCCT+GGG - Chr1:75473826-75473845 None:intergenic 55.0%
TTGGCATACGAACATCGCCC+TGG - Chr1:75473827-75473846 None:intergenic 55.0%
! AGCACGACTTTTGTGGGAGC+AGG + Chr1:75473014-75473033 MsG0180004243.01.T01:CDS 55.0%
! GGTCATGGCCGTACCTTTTC+TGG + Chr1:75474116-75474135 MsG0180004243.01.T01:CDS 55.0%
! GTGGCAGCACTTGTTGGTTG+TGG + Chr1:75473724-75473743 MsG0180004243.01.T01:CDS 55.0%
! TCCGGACTAATTTGCGGGGA+AGG + Chr1:75474243-75474262 MsG0180004243.01.T01:CDS 55.0%
! TTCGAGCAAAGGCGCGGATA+CGG - Chr1:75471302-75471321 None:intergenic 55.0%
!! GGCCGTACCTTTTCTGGTAG+GGG + Chr1:75474122-75474141 MsG0180004243.01.T01:CDS 55.0%
ATTGCACACGCACCTCTCCC+AGG + Chr1:75473806-75473825 MsG0180004243.01.T01:CDS 60.0%
CCTTTACGCCGATCGACGAG+CGG - Chr1:75473110-75473129 None:intergenic 60.0%
GCGCTTGTGTGTGTTGCAGG+AGG + Chr1:75472192-75472211 MsG0180004243.01.T01:intron 60.0%
TACGAACATCGCCCTGGGAG+AGG - Chr1:75473821-75473840 None:intergenic 60.0%
TTGCACACGCACCTCTCCCA+GGG + Chr1:75473807-75473826 MsG0180004243.01.T01:CDS 60.0%
! GCAAAGGCGCGGATACGGTA+TGG - Chr1:75471297-75471316 None:intergenic 60.0%
CCGCTCGTCGATCGGCGTAA+AGG + Chr1:75473107-75473126 MsG0180004243.01.T01:CDS 65.0%
Chromosome Type Strat End Strand Name
Chr1 gene 75471246 75475305 75471246 ID=MsG0180004243.01;Name=MsG0180004243.01
Chr1 mRNA 75471246 75475305 75471246 ID=MsG0180004243.01.T01;Parent=MsG0180004243.01;Name=MsG0180004243.01.T01;_AED=0.44;_eAED=0.44;_QI=166|1|1|1|0.71|0.5|8|403|680
Chr1 exon 75471246 75471393 75471246 ID=MsG0180004243.01.T01:exon:31816;Parent=MsG0180004243.01.T01
Chr1 exon 75471505 75471922 75471505 ID=MsG0180004243.01.T01:exon:31817;Parent=MsG0180004243.01.T01
Chr1 exon 75472211 75472383 75472211 ID=MsG0180004243.01.T01:exon:31818;Parent=MsG0180004243.01.T01
Chr1 exon 75472565 75472659 75472565 ID=MsG0180004243.01.T01:exon:31819;Parent=MsG0180004243.01.T01
Chr1 exon 75472763 75472897 75472763 ID=MsG0180004243.01.T01:exon:31820;Parent=MsG0180004243.01.T01
Chr1 exon 75472998 75473302 75472998 ID=MsG0180004243.01.T01:exon:31821;Parent=MsG0180004243.01.T01
Chr1 exon 75473410 75474689 75473410 ID=MsG0180004243.01.T01:exon:31822;Parent=MsG0180004243.01.T01
Chr1 exon 75475248 75475305 75475248 ID=MsG0180004243.01.T01:exon:31823;Parent=MsG0180004243.01.T01
Chr1 five_prime_UTR 75471246 75471393 75471246 ID=MsG0180004243.01.T01:five_prime_utr;Parent=MsG0180004243.01.T01
Chr1 five_prime_UTR 75471505 75471522 75471505 ID=MsG0180004243.01.T01:five_prime_utr;Parent=MsG0180004243.01.T01
Chr1 CDS 75471523 75471922 75471523 ID=MsG0180004243.01.T01:cds;Parent=MsG0180004243.01.T01
Chr1 CDS 75472211 75472383 75472211 ID=MsG0180004243.01.T01:cds;Parent=MsG0180004243.01.T01
Chr1 CDS 75472565 75472659 75472565 ID=MsG0180004243.01.T01:cds;Parent=MsG0180004243.01.T01
Chr1 CDS 75472763 75472897 75472763 ID=MsG0180004243.01.T01:cds;Parent=MsG0180004243.01.T01
Chr1 CDS 75472998 75473302 75472998 ID=MsG0180004243.01.T01:cds;Parent=MsG0180004243.01.T01
Chr1 CDS 75473410 75474344 75473410 ID=MsG0180004243.01.T01:cds;Parent=MsG0180004243.01.T01
Chr1 three_prime_UTR 75474345 75474689 75474345 ID=MsG0180004243.01.T01:three_prime_utr;Parent=MsG0180004243.01.T01
Chr1 three_prime_UTR 75475248 75475305 75475248 ID=MsG0180004243.01.T01:three_prime_utr;Parent=MsG0180004243.01.T01
Gene Sequence

>MsG0180004243.01.T01

ATGATTTCTCCATCAAGTCCACTAAACATCAACATGGAATTTGGAGAGAAAAAAATGGAAATTGAAAGAGATATTAATCAGAACATGGAAGAAAGGTTGCCAGTTATAGGAGCTGAAATAATCCAATCTGATGAACATTGGACAGAACACATAACAATAAGAGGATTGTTTGTGAGTATGATGATTGGAATAATATATAGTATAATAGCAATGAAGCTGAACCTTACAACAGGAATGGTTCCAAATTTGAATGTCTCTGCTGCTTTACTTGCTTTTGTCTTTGTAAGAAGTTGGACTAAAGTGCTTGAAAAAGCTGGCTTTGTTTCTAAGCCATTCACTCGCCAAGAAAATACCATTATTCAGACTTGTGCTGTTGCTTGTTATAGCATTGCTGTTAGCGGAGGATTTGCTTCTTACCTGTTGGGATTAAACAGGAAGACATATATATTGTCTGGAGTAGGCACTGAGGGTAACAACCCAAGCGCAGTTAAAGAACCTGCATTTGGTTGGATGTCTGGTTTCCTTTTTGTTGTTTGCTTTGTTGGACTCTTTGTCTTAATTCCACTCAGAAAGGTCTTGATAGTTGACCTCAATTTACCTTATCCAAGTGGCTTTGCAACAGCGGTTCTCATCAATGGTTTTCACACACAGGATGATAAAATGGCCAAGAAGCAAGTGCATGGATTCATGAAGTATTTTTCAATCAGTTTCTTATGGGGTTTCTTTAAGTGGTTTTTCTCAGGCAAAGAAGATTGTGGATTTGAACAGTTTCCAACCTTTGGATTGCAAGCTTGGAAGAACACATTTTATTTCGATTTTAGCACGACTTTTGTGGGAGCAGGAATGATATGTTCCCACCTTGTGAACTTGTCTCTGCTCCTTGGAGCTGTGCTCTCTTATGGAGTTATGTATCCGCTCGTCGATCGGCGTAAAGGAAACTGGTTCCCTGAAAACTTAGAAGAAACTAACATGAAGGGTTTATATGGTTATAAGGTTTTTCTATCAATTGCTCTAATCCTTGGTGATGGCGTATATACTTTCACCAAGATTCTAGTTTCAACTGTCCTTGGCGTACATGAAAGAATCAAGAGCAAGAACCATAAAAAGGAATTAGCTGCTGATGATCTGCACGGGAATCCAAATGGTGACCTTAAACAAGCTCAAACATTCTTGAAGGAGAGCATTCCAATGTGGATCGGGGTAGTTGGATATGGCGTTTTCACAACTATTTCGATAATTATAATCCCGCGCATGTTTCCTCAGCTGAAATGGTACTATGTCATTGTTGCTTATATATTTGCTCCATCTCTTGCATTCTGCAACGCTTTTGGAGCAGGTCTCACTGATATAAACATGGCATATAACTACGGGAAAGTTGCACTATTTTTGCTGGCAACTGTGACAGGAAAAGAAAATGGTGTAGTGGCAGCACTTGTTGGTTGTGGTCTCATTAAATCCGTGATCTCGGTGTCTTGCAATCTGATGCAAGATTTCAAAACTGCTCATTGCACACGCACCTCTCCCAGGGCGATGTTCGTATGCCAAGTAGTTGGCACTGCGATGGGGTGTATATGCTGTCCTCTGAGCTTCTTCCTGTTCTACAAAGCATTTGATGTGGGAAACCCACATGGAGAATTCAAAGCCCCTTATGCACTAATTTACAGAAACATGGCAGTTATAGGGGTTCAAGGTTTCTCGGCACTACCTCGACATTGCTTGCAACTTTGTTTTGGGTTCTTTGGTTTTGCAATAGGAACAAACATGTTAAGAGATTTTTCACCCAAAAAGATTGGGAAATGGATGCCATTACCAATGGTCATGGCCGTACCTTTTCTGGTAGGGGCATACTTTGCAATCGATATGTGCACGGGTAGTTTGGTTGTGTTCGTGTTGCACAAGCTTAACTCCAAGAAAGCAGAGTTGATGGTTCCAGCAATTGCATCCGGACTAATTTGCGGGGAAGGACTGTGGACTCTTCCTGCTGCTATTCTTGCTCTAGCGAAAATTAATCCGCCTATCTGCATGAAATTTGTTACTTCATAA
Protein sequence

>MsG0180004243.01.T01

MISPSSPLNINMEFGEKKMEIERDINQNMEERLPVIGAEIIQSDEHWTEHITIRGLFVSMMIGIIYSIIAMKLNLTTGMVPNLNVSAALLAFVFVRSWTKVLEKAGFVSKPFTRQENTIIQTCAVACYSIAVSGGFASYLLGLNRKTYILSGVGTEGNNPSAVKEPAFGWMSGFLFVVCFVGLFVLIPLRKVLIVDLNLPYPSGFATAVLINGFHTQDDKMAKKQVHGFMKYFSISFLWGFFKWFFSGKEDCGFEQFPTFGLQAWKNTFYFDFSTTFVGAGMICSHLVNLSLLLGAVLSYGVMYPLVDRRKGNWFPENLEETNMKGLYGYKVFLSIALILGDGVYTFTKILVSTVLGVHERIKSKNHKKELAADDLHGNPNGDLKQAQTFLKESIPMWIGVVGYGVFTTISIIIIPRMFPQLKWYYVIVAYIFAPSLAFCNAFGAGLTDINMAYNYGKVALFLLATVTGKENGVVAALVGCGLIKSVISVSCNLMQDFKTAHCTRTSPRAMFVCQVVGTAMGCICCPLSFFLFYKAFDVGNPHGEFKAPYALIYRNMAVIGVQGFSALPRHCLQLCFGFFGFAIGTNMLRDFSPKKIGKWMPLPMVMAVPFLVGAYFAIDMCTGSLVVFVLHKLNSKKAELMVPAIASGLICGEGLWTLPAAILALAKINPPICMKFVTS*