AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0180004368.01

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0180004368.01.T01 MTR_1g077840 98.824 680 8 0 1 680 1 680 0.0 1386
MsG0180004368.01.T01 MTR_3g092090 64.812 665 231 2 17 680 4 666 0.0 920
MsG0180004368.01.T01 MTR_3g092090 64.931 653 226 2 17 668 4 654 0.0 903
MsG0180004368.01.T01 MTR_1g007580 62.853 673 241 5 11 680 6 672 0.0 876
MsG0180004368.01.T01 MTR_0312s0020 62.085 662 246 4 23 680 12 672 0.0 864
MsG0180004368.01.T01 MTR_1g007540 62.085 662 246 4 23 680 12 672 0.0 864
MsG0180004368.01.T01 MTR_7g028250 53.521 639 288 5 46 677 37 673 0.0 728
MsG0180004368.01.T01 MTR_6g077870 51.794 641 294 7 47 679 66 699 0.0 711
MsG0180004368.01.T01 MTR_5g091600 51.274 667 312 7 22 679 7 669 0.0 704
MsG0180004368.01.T01 MTR_3g063490 53.052 639 291 5 47 679 48 683 0.0 698
MsG0180004368.01.T01 MTR_3g063520 52.426 639 295 5 47 679 42 677 0.0 673
MsG0180004368.01.T01 MTR_6g077870 51.402 535 251 6 153 679 5 538 0.0 595
MsG0180004368.01.T01 MTR_1626s0010 61.277 235 91 0 224 458 1 235 1.23e-102 313
MsG0180004368.01.T01 MTR_5g091615 56.954 151 64 1 530 679 59 209 5.47e-51 179
MsG0180004368.01.T01 MTR_0312s0050 74.699 83 21 0 47 129 38 120 1.77e-38 139
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0180004368.01.T01 AT4G24120 70.315 667 193 2 16 680 10 673 0.0 997
MsG0180004368.01.T01 AT5G53550 64.318 667 232 4 16 680 9 671 0.0 910
MsG0180004368.01.T01 AT5G53550 64.318 667 232 4 16 680 9 671 0.0 910
MsG0180004368.01.T01 AT5G53550 64.318 667 232 4 16 680 9 671 0.0 910
MsG0180004368.01.T01 AT5G53550 64.318 667 232 4 16 680 9 671 0.0 910
MsG0180004368.01.T01 AT5G53550 64.318 667 232 4 16 680 9 671 0.0 910
MsG0180004368.01.T01 AT5G24380 63.664 666 230 4 20 680 5 663 0.0 903
MsG0180004368.01.T01 AT1G65730 52.500 680 298 9 19 679 1 674 0.0 732
MsG0180004368.01.T01 AT3G27020 51.343 670 311 6 20 677 4 670 0.0 722
MsG0180004368.01.T01 AT5G41000 51.940 670 314 4 18 680 2 670 0.0 721
MsG0180004368.01.T01 AT5G53550 64.579 511 178 2 171 680 1 509 0.0 713
MsG0180004368.01.T01 AT5G41000 50.677 665 305 4 18 680 2 645 0.0 684
MsG0180004368.01.T01 AT1G48370 52.055 657 294 7 40 680 59 710 0.0 684
MsG0180004368.01.T01 AT3G17650 50.533 657 305 7 39 680 49 700 0.0 675
MsG0180004368.01.T01 AT3G17650 50.533 657 305 7 39 680 49 700 0.0 675
MsG0180004368.01.T01 AT1G48370 52.134 539 244 5 156 680 9 547 0.0 568
MsG0180004368.01.T01 AT5G41000 51.717 495 231 4 193 680 1 494 0.0 535
MsG0180004368.01.T01 AT5G45450 48.558 208 100 2 474 680 1 202 2.52e-65 215

Find 178 sgRNAs with CRISPR-Local

Find 252 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GGTCATGGCCGTACCGTTTC+TGG 0.148320 1:+77029852 MsG0180004368.01.T01:CDS
CTCGCATTCTGCAATGCTTT+TGG 0.175738 1:+77029346 MsG0180004368.01.T01:CDS
CATTGCTTGCAACTTTGTTT+TGG 0.185014 1:+77029748 MsG0180004368.01.T01:CDS
AGAATGTTTGAGCTTGTTTA+AGG 0.190142 1:-77029186 None:intergenic
AATCATCAACTCTGCTTTCT+TGG 0.210890 1:-77029944 None:intergenic
CTTGGAGCTGTGCTCTCTTA+TGG 0.235520 1:+77028804 MsG0180004368.01.T01:CDS
CAAGAGCAAGAACCATAAAA+AGG 0.240574 1:+77029010 MsG0180004368.01.T01:CDS
ATGATTCCAGCAATTGCTTC+TGG 0.245717 1:+77029961 MsG0180004368.01.T01:CDS
CTAAACATCAACATGGAATT+TGG 0.250698 1:+77027276 MsG0180004368.01.T01:CDS
GCAGCAGAGACATTCAAATT+TGG 0.267639 1:-77027495 None:intergenic
TTGATCGGCGTAAAGGAAAT+TGG 0.270852 1:+77028844 MsG0180004368.01.T01:CDS
GAAGGGTTTATATGGTTATA+AGG 0.272710 1:+77028896 MsG0180004368.01.T01:CDS
TACCGTATCCGCGCCTTTGC+TGG 0.281051 1:+77027029 MsG0180004368.01.T01:five_prime_UTR
AATTCCATGTTGATGTTTAG+TGG 0.299995 1:-77027273 None:intergenic
ACTAACATGAAGGGTTTATA+TGG 0.306840 1:+77028888 MsG0180004368.01.T01:CDS
ACAGAAACATGGCAGTTATA+GGG 0.308924 1:+77029698 MsG0180004368.01.T01:CDS
TCACACACAGGATGATAAAA+TGG 0.314433 1:+77028363 MsG0180004368.01.T01:CDS
CCTGCATTTGGTTGGATGTC+TGG 0.315025 1:+77028036 MsG0180004368.01.T01:CDS
TCTTATAAAATATGAATTAT+CGG 0.315234 1:+77030471 MsG0180004368.01.T01:three_prime_UTR
TTTGAACAGTTTCCAACCTT+TGG 0.315680 1:+77028584 MsG0180004368.01.T01:CDS
CTGTCCAATGTTCATCAGAT+TGG 0.320759 1:-77027377 None:intergenic
ATTATTTCAGCTCCTATAAC+TGG 0.321331 1:-77027354 None:intergenic
TACAGAAACATGGCAGTTAT+AGG 0.321915 1:+77029697 MsG0180004368.01.T01:CDS
CAACAAAGCAAACAACAAAA+AGG 0.327369 1:-77028062 None:intergenic
CAACCTTTGGATTGCAAGCT+TGG 0.329374 1:+77028597 MsG0180004368.01.T01:CDS
CCTCTAATTTGATACTTCAT+TGG 0.336009 1:-77030382 None:intergenic
ATTATATGCCATGTTTATAT+CGG 0.361843 1:-77029380 None:intergenic
CCAATGAAGTATCAAATTAG+AGG 0.365718 1:+77030382 MsG0180004368.01.T01:three_prime_UTR
GTATTAATGCCAACAGTATA+TGG 0.369274 1:-77030212 None:intergenic
ATAAACATGGCATATAATTA+CGG 0.369510 1:+77029385 MsG0180004368.01.T01:CDS
GAGGAAAGGTTGCCAGTTAT+AGG 0.369530 1:+77027342 MsG0180004368.01.T01:CDS
TTTCTGTAAATTAGCGCATA+AGG 0.374435 1:-77029682 None:intergenic
GGTGTAGTGGCAGCACTTGT+TGG 0.376653 1:+77029454 MsG0180004368.01.T01:CDS
TGGATCGGGGTGGTTGGATA+TGG 0.377446 1:+77029229 MsG0180004368.01.T01:CDS
TTGGAACCATTCCTGTTGTA+AGG 0.381075 1:-77027476 None:intergenic
CATCAAATGCCTTGTAGAAC+AGG 0.386991 1:-77029630 None:intergenic
GGATTTGCTTCTTACCTGTT+GGG 0.389382 1:+77027943 MsG0180004368.01.T01:CDS
TTGCTTCTGGACTAATTTGC+GGG 0.390184 1:+77029974 MsG0180004368.01.T01:CDS
GTGAACTTGTCTCTGCTCCT+TGG 0.393687 1:+77028786 MsG0180004368.01.T01:CDS
GCATGTTTCCTCAGCTGAAA+TGG 0.394853 1:+77029287 MsG0180004368.01.T01:CDS
TTCTACATTGCTTTATGTGT+TGG 0.396022 1:-77030089 None:intergenic
CTATCAATTGCTCTAATCCT+TGG 0.398456 1:+77028924 MsG0180004368.01.T01:CDS
ATCAAATTAGAGGATCAAAC+AGG 0.403785 1:+77030392 MsG0180004368.01.T01:three_prime_UTR
TCTACATTGCTTTATGTGTT+GGG 0.406683 1:-77030088 None:intergenic
TCTTATGGGGTTTCTTTAAG+TGG 0.406690 1:+77028534 MsG0180004368.01.T01:CDS
GCAACAGCGGTTCTCATCAA+TGG 0.408070 1:+77028337 MsG0180004368.01.T01:CDS
AGAGCATTCCAATGTGGATC+GGG 0.410494 1:+77029215 MsG0180004368.01.T01:CDS
CAAGACATAACAGATGTAAA+AGG 0.417047 1:+77030424 MsG0180004368.01.T01:three_prime_UTR
ACAAGCTCAAACATTCTTGA+AGG 0.418237 1:+77029192 MsG0180004368.01.T01:CDS
TAAACATGGCATATAATTAC+GGG 0.419343 1:+77029386 MsG0180004368.01.T01:CDS
TTGATGTTTAGTGGACTTGA+TGG 0.419351 1:-77027264 None:intergenic
GCAGTTAAAGAACCTGCATT+TGG 0.420611 1:+77028024 MsG0180004368.01.T01:CDS
CTTACCTGTTGGGATTAAAC+AGG 0.421340 1:+77027953 MsG0180004368.01.T01:CDS
TTCTGTAAATTAGCGCATAA+GGG 0.423993 1:-77029681 None:intergenic
TGATATGTGCACAGGTAGTT+TGG 0.424107 1:+77029894 MsG0180004368.01.T01:CDS
CAGGTTCTTTAACTGCGCTT+GGG 0.424884 1:-77028017 None:intergenic
GCAGGTTCTTTAACTGCGCT+TGG 0.426747 1:-77028018 None:intergenic
AGGATTTGCTTCTTACCTGT+TGG 0.428296 1:+77027942 MsG0180004368.01.T01:CDS
AACAGCACAAGTCTGAATAA+TGG 0.434716 1:-77027607 None:intergenic
GACAGTTGAAACTAGAATCT+TGG 0.437254 1:-77028967 None:intergenic
TCTTCCTGTTTAATCCCAAC+AGG 0.440272 1:-77027957 None:intergenic
GCTTGTTTAAGGTCACCATT+TGG 0.442681 1:-77029175 None:intergenic
ATGGCAGTTATAGGGGTTCA+AGG 0.442747 1:+77029706 MsG0180004368.01.T01:CDS
CAAGTAGTTGGCACTGCAAT+GGG 0.442885 1:+77029580 MsG0180004368.01.T01:CDS
TTCCAGCAAAGGCGCGGATA+CGG 0.448707 1:-77027031 None:intergenic
GGCCGTACCGTTTCTGGTAG+GGG 0.452239 1:+77029858 MsG0180004368.01.T01:CDS
ACAGAACACATAACAATAAG+AGG 0.457854 1:+77027396 MsG0180004368.01.T01:CDS
ATCATGATTGTTCAAGGAAG+GGG 0.458035 1:-77030337 None:intergenic
AGGAAGACATATATATTGTC+TGG 0.461260 1:+77027973 MsG0180004368.01.T01:CDS
ATTCTAGTTTCAACTGTCCT+TGG 0.462241 1:+77028972 MsG0180004368.01.T01:CDS
ATTGCACACGCACCTCTCCC+AGG 0.462537 1:+77029542 MsG0180004368.01.T01:CDS
CCGCTTGTTGATCGGCGTAA+AGG 0.468950 1:+77028837 MsG0180004368.01.T01:CDS
CCATTGCAGTGCCAACTACT+TGG 0.469410 1:-77029579 None:intergenic
TGGAATACAGTTCTTGCTGC+AGG 0.472709 1:+77030280 MsG0180004368.01.T01:three_prime_UTR
TTATGTATCCGCTTGTTGAT+CGG 0.475175 1:+77028829 MsG0180004368.01.T01:CDS
TTGGCATACGAACATCGCCC+TGG 0.477283 1:-77029560 None:intergenic
ATTAGTCCAGAAGCAATTGC+TGG 0.479004 1:-77029967 None:intergenic
GTGTAGTGGCAGCACTTGTT+GGG 0.479516 1:+77029455 MsG0180004368.01.T01:CDS
TGTCTTAATTCCACTCAGAA+AGG 0.483712 1:+77028092 MsG0180004368.01.T01:CDS
ATTGCTTCTGGACTAATTTG+CGG 0.484236 1:+77029973 MsG0180004368.01.T01:CDS
TGGCCGTACCGTTTCTGGTA+GGG 0.487172 1:+77029857 MsG0180004368.01.T01:CDS
CAAGCTTGCAATCCAAAGGT+TGG 0.490018 1:-77028596 None:intergenic
GTTGCAAAGCCACTTGGATA+AGG 0.490476 1:-77028319 None:intergenic
TGTTATAGCATTGCTGTTAG+CGG 0.491697 1:+77027633 MsG0180004368.01.T01:CDS
ATGGCCGTACCGTTTCTGGT+AGG 0.493169 1:+77029856 MsG0180004368.01.T01:CDS
TTCATTGGTATACATTGGTA+AGG 0.499899 1:-77030367 None:intergenic
TCTGGACTAATTTGCGGGGA+AGG 0.499946 1:+77029979 MsG0180004368.01.T01:CDS
GAGCTTCTTCCTGTTCTACA+AGG 0.503256 1:+77029621 MsG0180004368.01.T01:CDS
CAGAAACATGGCAGTTATAG+GGG 0.504777 1:+77029699 MsG0180004368.01.T01:CDS
TACGAACATCGCCCTGGGAG+AGG 0.508872 1:-77029554 None:intergenic
TTGTTTGTGAGTATGATGAT+TGG 0.510508 1:+77027420 MsG0180004368.01.T01:CDS
GATACTTCATTGGTATACAT+TGG 0.510939 1:-77030372 None:intergenic
GAGAAAGAACAAATAAACTA+AGG 0.515796 1:+77027104 MsG0180004368.01.T01:five_prime_UTR
ATGGACTTATTATATAGTGT+GGG 0.516304 1:-77027007 None:intergenic
AAATCATGATTGTTCAAGGA+AGG 0.516568 1:-77030339 None:intergenic
ATGAAGCTGAACCTTACAAC+AGG 0.516868 1:+77027465 MsG0180004368.01.T01:CDS
CCAAGTAGTTGGCACTGCAA+TGG 0.516937 1:+77029579 MsG0180004368.01.T01:CDS
ACGGCCATGACCATCGGTAA+TGG 0.517774 1:-77029841 None:intergenic
CTTCCAAGCTTGCAATCCAA+AGG 0.518270 1:-77028600 None:intergenic
GCAAAGGCGCGGATACGGTA+TGG 0.521818 1:-77027026 None:intergenic
TTAAAGAACCTGCATTTGGT+TGG 0.523266 1:+77028028 MsG0180004368.01.T01:CDS
ACCGCTGTTGCAAAGCCACT+TGG 0.524230 1:-77028325 None:intergenic
CTTAGAAGAAACTAACATGA+AGG 0.531827 1:+77028878 MsG0180004368.01.T01:CDS
AAGTATGCCCCTACCAGAAA+CGG 0.532502 1:-77029865 None:intergenic
TAATCCAATCTGATGAACAT+TGG 0.534849 1:+77027373 MsG0180004368.01.T01:CDS
TCTCATTAAATCCGTGATCT+CGG 0.542009 1:+77029483 MsG0180004368.01.T01:CDS
AACGGTACGGCCATGACCAT+CGG 0.544921 1:-77029847 None:intergenic
AATCATGATTGTTCAAGGAA+GGG 0.547523 1:-77030338 None:intergenic
TTGTCTGGAGTAGGCACTGA+GGG 0.548441 1:+77027988 MsG0180004368.01.T01:CDS
TATGGACTTATTATATAGTG+TGG 0.549861 1:-77027008 None:intergenic
GCATTGCAGAATGCGAGAGA+TGG 0.551488 1:-77029340 None:intergenic
TCCAAGTGGCTTTGCAACAG+CGG 0.554986 1:+77028324 MsG0180004368.01.T01:CDS
CCAATGTGGATCGGGGTGGT+TGG 0.555058 1:+77029223 MsG0180004368.01.T01:CDS
AAGATGCTTTCTTCCAGCAA+AGG 0.555540 1:-77027042 None:intergenic
CCAACCACCCCGATCCACAT+TGG 0.558976 1:-77029223 None:intergenic
TTCTACAAGGCATTTGATGT+GGG 0.559939 1:+77029634 MsG0180004368.01.T01:CDS
TTTGCAATTGATATGTGCAC+AGG 0.560248 1:+77029886 MsG0180004368.01.T01:CDS
GTGGCAGCACTTGTTGGGTG+TGG 0.560583 1:+77029460 MsG0180004368.01.T01:CDS
GTAACAAATTTCATGCAGAT+AGG 0.560658 1:-77030051 None:intergenic
GTTCTACAAGGCATTTGATG+TGG 0.561788 1:+77029633 MsG0180004368.01.T01:CDS
GAGAGCATTCCAATGTGGAT+CGG 0.564131 1:+77029214 MsG0180004368.01.T01:CDS
CTCAATTTACCTTATCCAAG+TGG 0.569415 1:+77028310 MsG0180004368.01.T01:CDS
TAAGAATTTCAGAATTTGTG+TGG 0.574174 1:-77030453 None:intergenic
GATACCATTACCGATGGTCA+TGG 0.576195 1:+77029837 MsG0180004368.01.T01:CDS
TTAGAAGAAACTAACATGAA+GGG 0.576320 1:+77028879 MsG0180004368.01.T01:CDS
CCAGACATCCAACCAAATGC+AGG 0.582970 1:-77028036 None:intergenic
CAGAGACAAGTTCACAAGGT+GGG 0.586027 1:-77028778 None:intergenic
TCTGTAAATTAGCGCATAAG+GGG 0.587143 1:-77029680 None:intergenic
TGATTCTTTCATGTACGCCA+AGG 0.587279 1:-77028989 None:intergenic
TATTGCAGGAAGCAAGTGCA+TGG 0.588826 1:+77028485 MsG0180004368.01.T01:intron
GCTAGAGCAAGAATAGCAGC+AGG 0.590008 1:-77030015 None:intergenic
TGGCATACGAACATCGCCCT+GGG 0.590951 1:-77029559 None:intergenic
TTGCACACGCACCTCTCCCA+GGG 0.591980 1:+77029543 MsG0180004368.01.T01:CDS
CACTTGGATAAGGTAAATTG+AGG 0.592998 1:-77028309 None:intergenic
TTAATCAGAACATGGAGGAA+AGG 0.596522 1:+77027328 MsG0180004368.01.T01:CDS
ATTGCAAGACACCGAGATCA+CGG 0.597470 1:-77029494 None:intergenic
CCTTTACGCCGATCAACAAG+CGG 0.598669 1:-77028837 None:intergenic
TTAGCTGCTGATGATATGCA+CGG 0.598888 1:+77029148 MsG0180004368.01.T01:CDS
GATATGCACGGGAATCCAAA+TGG 0.600924 1:+77029160 MsG0180004368.01.T01:CDS
CATAAGAGAGCACAGCTCCA+AGG 0.601707 1:-77028803 None:intergenic
ACAAATTTCATGCAGATAGG+CGG 0.603089 1:-77030048 None:intergenic
TCAGCTGAGGAAACATGCGC+GGG 0.603914 1:-77029282 None:intergenic
TGCGCTAATTTACAGAAACA+TGG 0.611107 1:+77029687 MsG0180004368.01.T01:CDS
ATTGCTCTAATCCTTGGTGA+TGG 0.613675 1:+77028930 MsG0180004368.01.T01:CDS
ACTGTGACAGGAAAAGAGAA+TGG 0.615219 1:+77029433 MsG0180004368.01.T01:CDS
GCTTTCTTCCAGCAAAGGCG+CGG 0.616342 1:-77027037 None:intergenic
TGCCCCTACCAGAAACGGTA+CGG 0.622037 1:-77029860 None:intergenic
ATGTTCGTATGCCAAGTAGT+TGG 0.622489 1:+77029568 MsG0180004368.01.T01:CDS
AGGAAAAGAGAATGGTGTAG+TGG 0.626117 1:+77029441 MsG0180004368.01.T01:CDS
GCTGAACCTTACAACAGGAA+TGG 0.626965 1:+77027470 MsG0180004368.01.T01:CDS
AGAACATTACCATATACTGT+TGG 0.627524 1:+77030203 MsG0180004368.01.T01:three_prime_UTR
TAGCTGCTGATGATATGCAC+GGG 0.628013 1:+77029149 MsG0180004368.01.T01:CDS
ACATATATATTGTCTGGAGT+AGG 0.628251 1:+77027979 MsG0180004368.01.T01:CDS
TTCAGCTGAGGAAACATGCG+CGG 0.629166 1:-77029283 None:intergenic
TAATTTGCGGGGAAGGACTG+TGG 0.634672 1:+77029986 MsG0180004368.01.T01:CDS
ACATAGTACCATTTCAGCTG+AGG 0.638500 1:-77029295 None:intergenic
TTCTCAGGCAAAGAAGACTG+TGG 0.640879 1:+77028560 MsG0180004368.01.T01:CDS
CAAAGTTGCAAGCAATGTCG+AGG 0.653267 1:-77029742 None:intergenic
AAGAGATATTAATCAGAACA+TGG 0.654492 1:+77027320 MsG0180004368.01.T01:CDS
GGAGCAGAGACAAGTTCACA+AGG 0.657179 1:-77028782 None:intergenic
GAGCATTCCAATGTGGATCG+GGG 0.663368 1:+77029216 MsG0180004368.01.T01:CDS
AAGTCCACTAAACATCAACA+TGG 0.666317 1:+77027269 MsG0180004368.01.T01:CDS
TCAAATTAGAGGATCAAACA+GGG 0.667541 1:+77030393 MsG0180004368.01.T01:three_prime_UTR
GAAATGGATACCATTACCGA+TGG 0.669885 1:+77029831 MsG0180004368.01.T01:CDS
AGGTCTCACCGATATAAACA+TGG 0.670610 1:+77029372 MsG0180004368.01.T01:CDS
TTTGATGTGGGAAATCCACA+TGG 0.672631 1:+77029646 MsG0180004368.01.T01:CDS
TGAAGGAGAGCATTCCAATG+TGG 0.677015 1:+77029209 MsG0180004368.01.T01:CDS
TAGAACAGGAAGAAGCTCAG+AGG 0.678038 1:-77029616 None:intergenic
TGCTTCTGGACTAATTTGCG+GGG 0.681116 1:+77029975 MsG0180004368.01.T01:CDS
TGGACTTATTATATAGTGTG+GGG 0.685196 1:-77027006 None:intergenic
GGGGCTTTGAATTCTCCATG+TGG 0.688129 1:-77029661 None:intergenic
GCAGAGACAAGTTCACAAGG+TGG 0.689164 1:-77028779 None:intergenic
CATTCCAATGTGGATCGGGG+TGG 0.693940 1:+77029219 MsG0180004368.01.T01:CDS
GGACTACAAACCTTTCTGAG+TGG 0.695745 1:-77028102 None:intergenic
AAGTATATACGCCATCACCA+AGG 0.720711 1:-77028941 None:intergenic
ATTGTCTGGAGTAGGCACTG+AGG 0.727451 1:+77027987 MsG0180004368.01.T01:CDS
AGATATTAATCAGAACATGG+AGG 0.737419 1:+77027323 MsG0180004368.01.T01:CDS
AAGTAGTTGGCACTGCAATG+GGG 0.753918 1:+77029581 MsG0180004368.01.T01:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAAAGAAAACAAAAAAGAA+AGG - Chr1:77030129-77030148 None:intergenic 15.0%
!! ATCTTATATTATAATATTGC+AGG + Chr1:77028471-77028490 MsG0180004368.01.T01:intron 15.0%
!! ATGTTACTAATCTTATTATT+TGG + Chr1:77028691-77028710 MsG0180004368.01.T01:intron 15.0%
!! CATATAATATATAATTGGTT+TGG + Chr1:77028646-77028665 MsG0180004368.01.T01:intron 15.0%
!! TCAAGCATATAATATATAAT+TGG + Chr1:77028641-77028660 MsG0180004368.01.T01:intron 15.0%
!! TGCAATATTATAATATAAGA+TGG - Chr1:77028472-77028491 None:intergenic 15.0%
!! ATAAACATGGCATATAATTA+CGG + Chr1:77029385-77029404 MsG0180004368.01.T01:CDS 20.0%
!! ATTATATGCCATGTTTATAT+CGG - Chr1:77029383-77029402 None:intergenic 20.0%
!! GAAAAATTCAAAAGAAGAAA+GGG - Chr1:77029063-77029082 None:intergenic 20.0%
!! GAAAATGATAAATATGTAGT+AGG - Chr1:77027671-77027690 None:intergenic 20.0%
!! TGAAAAATTCAAAAGAAGAA+AGG - Chr1:77029064-77029083 None:intergenic 20.0%
!!! ATTTTTCAATCAGTTTCTTA+TGG + Chr1:77028519-77028538 MsG0180004368.01.T01:CDS 20.0%
!!! GTTTTTCTTTTAGTTTTGTT+GGG - Chr1:77030318-77030337 None:intergenic 20.0%
!!! TTAATTAGACACTGAATTTT+TGG - Chr1:77028253-77028272 None:intergenic 20.0%
!!! TTTTTCAATCAGTTTCTTAT+GGG + Chr1:77028520-77028539 MsG0180004368.01.T01:CDS 20.0%
!!! TTTTTCTTTTAGTTTTGTTG+GGG - Chr1:77030317-77030336 None:intergenic 20.0%
! AAGAGATATTAATCAGAACA+TGG + Chr1:77027320-77027339 MsG0180004368.01.T01:CDS 25.0%
! ATCCAAAATTGTGTACAAAA+AGG - Chr1:77028144-77028163 None:intergenic 25.0%
! ATGGACTTATTATATAGTGT+GGG - Chr1:77027010-77027029 None:intergenic 25.0%
! GAGAAAGAACAAATAAACTA+AGG + Chr1:77027104-77027123 MsG0180004368.01.T01:five_prime_UTR 25.0%
! TAAACATGGCATATAATTAC+GGG + Chr1:77029386-77029405 MsG0180004368.01.T01:CDS 25.0%
! TAAGAATTTCAGAATTTGTG+TGG - Chr1:77030456-77030475 None:intergenic 25.0%
! TAATATAGTAAAGTTGTGAC+AGG + Chr1:77027213-77027232 MsG0180004368.01.T01:intron 25.0%
! TATGGACTTATTATATAGTG+TGG - Chr1:77027011-77027030 None:intergenic 25.0%
! TGAAAAATCATGATTGTTCA+AGG - Chr1:77030346-77030365 None:intergenic 25.0%
! TTAGAAGAAACTAACATGAA+GGG + Chr1:77028879-77028898 MsG0180004368.01.T01:CDS 25.0%
! TTGTGCAATTTGGAAAATAA+AGG + Chr1:77028431-77028450 MsG0180004368.01.T01:intron 25.0%
!! ATTTTTCACCCAAAAAGATT+GGG + Chr1:77029809-77029828 MsG0180004368.01.T01:CDS 25.0%
!! TAGTTTCTTCTAAGTTTTCA+GGG - Chr1:77028872-77028891 None:intergenic 25.0%
!! TATGTTCTTTACCCTTTTTA+TGG - Chr1:77029025-77029044 None:intergenic 25.0%
!! TCTGAATAATGGTATTTTCT+TGG - Chr1:77027599-77027618 None:intergenic 25.0%
!! TTAGTTTCTTCTAAGTTTTC+AGG - Chr1:77028873-77028892 None:intergenic 25.0%
!! TTTTCAATCAGTTTCTTATG+GGG + Chr1:77028521-77028540 MsG0180004368.01.T01:CDS 25.0%
!!! GGTTTTTCTTTTAGTTTTGT+TGG - Chr1:77030319-77030338 None:intergenic 25.0%
!!! TAACTTTTGTTTGTGCAATT+TGG + Chr1:77028421-77028440 MsG0180004368.01.T01:intron 25.0%
!!! TTTTCTTTTAGTTTTGTTGG+GGG - Chr1:77030316-77030335 None:intergenic 25.0%
AAATCATGATTGTTCAAGGA+AGG - Chr1:77030342-77030361 None:intergenic 30.0%
AAGAGCAAGAACCATAAAAA+GGG + Chr1:77029011-77029030 MsG0180004368.01.T01:CDS 30.0%
AATCATGATTGTTCAAGGAA+GGG - Chr1:77030341-77030360 None:intergenic 30.0%
AATTCCATGTTGATGTTTAG+TGG - Chr1:77027276-77027295 None:intergenic 30.0%
AATTCTGACAAAAATAACGC+AGG + Chr1:77030253-77030272 MsG0180004368.01.T01:three_prime_UTR 30.0%
ACAGAACACATAACAATAAG+AGG + Chr1:77027396-77027415 MsG0180004368.01.T01:CDS 30.0%
ACTAACATGAAGGGTTTATA+TGG + Chr1:77028888-77028907 MsG0180004368.01.T01:CDS 30.0%
AGAACATTACCATATACTGT+TGG + Chr1:77030203-77030222 MsG0180004368.01.T01:three_prime_UTR 30.0%
AGATATTAATCAGAACATGG+AGG + Chr1:77027323-77027342 MsG0180004368.01.T01:CDS 30.0%
AGGAAGACATATATATTGTC+TGG + Chr1:77027973-77027992 MsG0180004368.01.T01:CDS 30.0%
ATCAAATTAGAGGATCAAAC+AGG + Chr1:77030392-77030411 MsG0180004368.01.T01:three_prime_UTR 30.0%
ATTATTTCAGCTCCTATAAC+TGG - Chr1:77027357-77027376 None:intergenic 30.0%
CAACAAAGCAAACAACAAAA+AGG - Chr1:77028065-77028084 None:intergenic 30.0%
CAAGACATAACAGATGTAAA+AGG + Chr1:77030424-77030443 MsG0180004368.01.T01:three_prime_UTR 30.0%
CCTCTAATTTGATACTTCAT+TGG - Chr1:77030385-77030404 None:intergenic 30.0%
CTAAACATCAACATGGAATT+TGG + Chr1:77027276-77027295 MsG0180004368.01.T01:CDS 30.0%
CTTAGAAGAAACTAACATGA+AGG + Chr1:77028878-77028897 MsG0180004368.01.T01:CDS 30.0%
GAAGAGATGTTTATAGTACT+TGG - Chr1:77028389-77028408 None:intergenic 30.0%
GAAGGGTTTATATGGTTATA+AGG + Chr1:77028896-77028915 MsG0180004368.01.T01:CDS 30.0%
GATACTTCATTGGTATACAT+TGG - Chr1:77030375-77030394 None:intergenic 30.0%
GTAACAAATTTCATGCAGAT+AGG - Chr1:77030054-77030073 None:intergenic 30.0%
GTATTAATGCCAACAGTATA+TGG - Chr1:77030215-77030234 None:intergenic 30.0%
TAATCCAATCTGATGAACAT+TGG + Chr1:77027373-77027392 MsG0180004368.01.T01:CDS 30.0%
TCAAATTAGAGGATCAAACA+GGG + Chr1:77030393-77030412 MsG0180004368.01.T01:three_prime_UTR 30.0%
TCTACATTGCTTTATGTGTT+GGG - Chr1:77030091-77030110 None:intergenic 30.0%
TGGACTTATTATATAGTGTG+GGG - Chr1:77027009-77027028 None:intergenic 30.0%
TTCATTGGTATACATTGGTA+AGG - Chr1:77030370-77030389 None:intergenic 30.0%
TTCTACATTGCTTTATGTGT+TGG - Chr1:77030092-77030111 None:intergenic 30.0%
TTCTGTAAATTAGCGCATAA+GGG - Chr1:77029684-77029703 None:intergenic 30.0%
TTGTTTGTGAGTATGATGAT+TGG + Chr1:77027420-77027439 MsG0180004368.01.T01:CDS 30.0%
TTTCTGTAAATTAGCGCATA+AGG - Chr1:77029685-77029704 None:intergenic 30.0%
TTTGTAGTCCGATAATACTT+TGG + Chr1:77028115-77028134 MsG0180004368.01.T01:intron 30.0%
! AAAGGAGTCCAAAGTATTAT+CGG - Chr1:77028126-77028145 None:intergenic 30.0%
! ACATATATATTGTCTGGAGT+AGG + Chr1:77027979-77027998 MsG0180004368.01.T01:CDS 30.0%
! AGAATGTTTGAGCTTGTTTA+AGG - Chr1:77029189-77029208 None:intergenic 30.0%
! ATAGTTGATACATGAGACAA+AGG - Chr1:77027186-77027205 None:intergenic 30.0%
! ATCCATTTCCCAATCTTTTT+GGG - Chr1:77029820-77029839 None:intergenic 30.0%
! CCAATGAAGTATCAAATTAG+AGG + Chr1:77030382-77030401 MsG0180004368.01.T01:three_prime_UTR 30.0%
! CTCCTTTTTGTACACAATTT+TGG + Chr1:77028139-77028158 MsG0180004368.01.T01:intron 30.0%
! CTTTTGTGTTTGTAAGAAGT+TGG + Chr1:77027526-77027545 MsG0180004368.01.T01:CDS 30.0%
! GATTTTTCACCCAAAAAGAT+TGG + Chr1:77029808-77029827 MsG0180004368.01.T01:CDS 30.0%
! GGAATTTGGTGAGAAAAAAA+TGG + Chr1:77027290-77027309 MsG0180004368.01.T01:CDS 30.0%
! TATCCATTTCCCAATCTTTT+TGG - Chr1:77029821-77029840 None:intergenic 30.0%
! TCTTTTTCTTTCCATCTTTC+AGG + Chr1:77028169-77028188 MsG0180004368.01.T01:intron 30.0%
! TTCTTTAAGTGGTTTTTCTC+AGG + Chr1:77028545-77028564 MsG0180004368.01.T01:CDS 30.0%
!! CTTTTAAAAGTCCTGAAAGA+TGG - Chr1:77028183-77028202 None:intergenic 30.0%
!!! ATTGCTTGCAACTTTGTTTT+GGG + Chr1:77029749-77029768 MsG0180004368.01.T01:CDS 30.0%
!!! CTTTTTGTTGTTTGCTTTGT+TGG + Chr1:77028063-77028082 MsG0180004368.01.T01:CDS 30.0%
!!! TTCTTTTTTTGTCACTGTTG+TGG + Chr1:77030141-77030160 MsG0180004368.01.T01:three_prime_UTR 30.0%
AACAGCACAAGTCTGAATAA+TGG - Chr1:77027610-77027629 None:intergenic 35.0%
AAGTCCACTAAACATCAACA+TGG + Chr1:77027269-77027288 MsG0180004368.01.T01:CDS 35.0%
AATCAGATCATGTTCCAGTA+AGG + Chr1:77027757-77027776 MsG0180004368.01.T01:intron 35.0%
AATCATCAACTCTGCTTTCT+TGG - Chr1:77029947-77029966 None:intergenic 35.0%
ACAAAAATAACGCAGGTTTC+TGG + Chr1:77030260-77030279 MsG0180004368.01.T01:three_prime_UTR 35.0%
ACAAATTTCATGCAGATAGG+CGG - Chr1:77030051-77030070 None:intergenic 35.0%
ACAAGCTCAAACATTCTTGA+AGG + Chr1:77029192-77029211 MsG0180004368.01.T01:CDS 35.0%
ACAGAAACATGGCAGTTATA+GGG + Chr1:77029698-77029717 MsG0180004368.01.T01:CDS 35.0%
ATCATCAGCAGCTAATTCTA+AGG - Chr1:77029143-77029162 None:intergenic 35.0%
ATCATGATTGTTCAAGGAAG+GGG - Chr1:77030340-77030359 None:intergenic 35.0%
ATTGCTTCTGGACTAATTTG+CGG + Chr1:77029973-77029992 MsG0180004368.01.T01:CDS 35.0%
CAAGAGCAAGAACCATAAAA+AGG + Chr1:77029010-77029029 MsG0180004368.01.T01:CDS 35.0%
CACTTGGATAAGGTAAATTG+AGG - Chr1:77028312-77028331 None:intergenic 35.0%
CTATCAATTGCTCTAATCCT+TGG + Chr1:77028924-77028943 MsG0180004368.01.T01:CDS 35.0%
CTCAATTTACCTTATCCAAG+TGG + Chr1:77028310-77028329 MsG0180004368.01.T01:CDS 35.0%
GACAGTTGAAACTAGAATCT+TGG - Chr1:77028970-77028989 None:intergenic 35.0%
GTCCTTGATTTCTAACGAAA+CGG - Chr1:77027713-77027732 None:intergenic 35.0%
TACAGAAACATGGCAGTTAT+AGG + Chr1:77029697-77029716 MsG0180004368.01.T01:CDS 35.0%
TATGTATGAAACGACCTTAC+TGG - Chr1:77027774-77027793 None:intergenic 35.0%
TCACACACAGGATGATAAAA+TGG + Chr1:77028363-77028382 MsG0180004368.01.T01:CDS 35.0%
TCGTTAATGAGATTCAGCTA+AGG + Chr1:77027821-77027840 MsG0180004368.01.T01:intron 35.0%
TCTCATTAAATCCGTGATCT+CGG + Chr1:77029483-77029502 MsG0180004368.01.T01:CDS 35.0%
TCTGTAAATTAGCGCATAAG+GGG - Chr1:77029683-77029702 None:intergenic 35.0%
TCTTATGGGGTTTCTTTAAG+TGG + Chr1:77028534-77028553 MsG0180004368.01.T01:CDS 35.0%
TGCGCTAATTTACAGAAACA+TGG + Chr1:77029687-77029706 MsG0180004368.01.T01:CDS 35.0%
TGTCTTAATTCCACTCAGAA+AGG + Chr1:77028092-77028111 MsG0180004368.01.T01:CDS 35.0%
TTAAAGAACCTGCATTTGGT+TGG + Chr1:77028028-77028047 MsG0180004368.01.T01:CDS 35.0%
TTAATCAGAACATGGAGGAA+AGG + Chr1:77027328-77027347 MsG0180004368.01.T01:CDS 35.0%
TTCCGTTTCGTTAGAAATCA+AGG + Chr1:77027708-77027727 MsG0180004368.01.T01:intron 35.0%
TTCGTTAGAAATCAAGGACA+CGG + Chr1:77027714-77027733 MsG0180004368.01.T01:intron 35.0%
TTTGAACAGTTTCCAACCTT+TGG + Chr1:77028584-77028603 MsG0180004368.01.T01:CDS 35.0%
TTTGCAATTGATATGTGCAC+AGG + Chr1:77029886-77029905 MsG0180004368.01.T01:CDS 35.0%
! ACTAAAGTGCTTGAAAAAGC+TGG + Chr1:77027549-77027568 MsG0180004368.01.T01:CDS 35.0%
! TGTTATAGCATTGCTGTTAG+CGG + Chr1:77027633-77027652 MsG0180004368.01.T01:CDS 35.0%
! TTATGTATCCGCTTGTTGAT+CGG + Chr1:77028829-77028848 MsG0180004368.01.T01:CDS 35.0%
! TTCTACAAGGCATTTGATGT+GGG + Chr1:77029634-77029653 MsG0180004368.01.T01:CDS 35.0%
!! ATTCTAGTTTCAACTGTCCT+TGG + Chr1:77028972-77028991 MsG0180004368.01.T01:CDS 35.0%
!! CATTGCTTGCAACTTTGTTT+TGG + Chr1:77029748-77029767 MsG0180004368.01.T01:CDS 35.0%
!! GATTTTAGCACGACTTTTGT+GGG + Chr1:77028738-77028757 MsG0180004368.01.T01:CDS 35.0%
!! TTGATGTTTAGTGGACTTGA+TGG - Chr1:77027267-77027286 None:intergenic 35.0%
!!! GAAAGTTGCACTATTTTTGC+TGG + Chr1:77029408-77029427 MsG0180004368.01.T01:CDS 35.0%
AAGATGCTTTCTTCCAGCAA+AGG - Chr1:77027045-77027064 None:intergenic 40.0%
AAGTATATACGCCATCACCA+AGG - Chr1:77028944-77028963 None:intergenic 40.0%
ACATAGTACCATTTCAGCTG+AGG - Chr1:77029298-77029317 None:intergenic 40.0%
ACTGTGACAGGAAAAGAGAA+TGG + Chr1:77029433-77029452 MsG0180004368.01.T01:CDS 40.0%
AGGAAAAGAGAATGGTGTAG+TGG + Chr1:77029441-77029460 MsG0180004368.01.T01:CDS 40.0%
AGGTCTCACCGATATAAACA+TGG + Chr1:77029372-77029391 MsG0180004368.01.T01:CDS 40.0%
ATGAAGCTGAACCTTACAAC+AGG + Chr1:77027465-77027484 MsG0180004368.01.T01:CDS 40.0%
ATGATTCCAGCAATTGCTTC+TGG + Chr1:77029961-77029980 MsG0180004368.01.T01:CDS 40.0%
ATGTTCGTATGCCAAGTAGT+TGG + Chr1:77029568-77029587 MsG0180004368.01.T01:CDS 40.0%
ATTAGTCCAGAAGCAATTGC+TGG - Chr1:77029970-77029989 None:intergenic 40.0%
ATTGCTCTAATCCTTGGTGA+TGG + Chr1:77028930-77028949 MsG0180004368.01.T01:CDS 40.0%
CACCCAAAAAGATTGGGAAA+TGG + Chr1:77029815-77029834 MsG0180004368.01.T01:CDS 40.0%
CAGAAACATGGCAGTTATAG+GGG + Chr1:77029699-77029718 MsG0180004368.01.T01:CDS 40.0%
CATCAAATGCCTTGTAGAAC+AGG - Chr1:77029633-77029652 None:intergenic 40.0%
CTGTCCAATGTTCATCAGAT+TGG - Chr1:77027380-77027399 None:intergenic 40.0%
CTTACCTGTTGGGATTAAAC+AGG + Chr1:77027953-77027972 MsG0180004368.01.T01:CDS 40.0%
GAAATGGATACCATTACCGA+TGG + Chr1:77029831-77029850 MsG0180004368.01.T01:CDS 40.0%
GCAGCAGAGACATTCAAATT+TGG - Chr1:77027498-77027517 None:intergenic 40.0%
GCAGTTAAAGAACCTGCATT+TGG + Chr1:77028024-77028043 MsG0180004368.01.T01:CDS 40.0%
GCGCAAATTAATCCAGAGTT+CGG - Chr1:77027906-77027925 None:intergenic 40.0%
TAATCCAGAGTTCGGTTAAG+AGG - Chr1:77027898-77027917 None:intergenic 40.0%
TCTTCCTGTTTAATCCCAAC+AGG - Chr1:77027960-77027979 None:intergenic 40.0%
TGATATGTGCACAGGTAGTT+TGG + Chr1:77029894-77029913 MsG0180004368.01.T01:CDS 40.0%
TGATTCTTTCATGTACGCCA+AGG - Chr1:77028992-77029011 None:intergenic 40.0%
TTAGCTGCTGATGATATGCA+CGG + Chr1:77029148-77029167 MsG0180004368.01.T01:CDS 40.0%
TTGATCGGCGTAAAGGAAAT+TGG + Chr1:77028844-77028863 MsG0180004368.01.T01:CDS 40.0%
TTGGAACCATTCCTGTTGTA+AGG - Chr1:77027479-77027498 None:intergenic 40.0%
TTTGATGTGGGAAATCCACA+TGG + Chr1:77029646-77029665 MsG0180004368.01.T01:CDS 40.0%
! AGGATTTGCTTCTTACCTGT+TGG + Chr1:77027942-77027961 MsG0180004368.01.T01:CDS 40.0%
! CATCAATGGTTTTCACACAC+AGG + Chr1:77028351-77028370 MsG0180004368.01.T01:CDS 40.0%
! GCTTGTTTAAGGTCACCATT+TGG - Chr1:77029178-77029197 None:intergenic 40.0%
! GGATTTGCTTCTTACCTGTT+GGG + Chr1:77027943-77027962 MsG0180004368.01.T01:CDS 40.0%
! GTATTTTCTTGGCGAGTGAA+TGG - Chr1:77027588-77027607 None:intergenic 40.0%
! GTTCTACAAGGCATTTGATG+TGG + Chr1:77029633-77029652 MsG0180004368.01.T01:CDS 40.0%
! GTTGCACATTTTTCTGATGC+AGG + Chr1:77028273-77028292 MsG0180004368.01.T01:intron 40.0%
! TTGCTTCTGGACTAATTTGC+GGG + Chr1:77029974-77029993 MsG0180004368.01.T01:CDS 40.0%
!! CGATTTTAGCACGACTTTTG+TGG + Chr1:77028737-77028756 MsG0180004368.01.T01:CDS 40.0%
!! GGGTTCTTTGCTTTTGCAAT+AGG + Chr1:77029769-77029788 MsG0180004368.01.T01:CDS 40.0%
AAGTAGTTGGCACTGCAATG+GGG + Chr1:77029581-77029600 MsG0180004368.01.T01:CDS 45.0%
AAGTATGCCCCTACCAGAAA+CGG - Chr1:77029868-77029887 None:intergenic 45.0%
ATGGCAGTTATAGGGGTTCA+AGG + Chr1:77029706-77029725 MsG0180004368.01.T01:CDS 45.0%
ATTGCAAGACACCGAGATCA+CGG - Chr1:77029497-77029516 None:intergenic 45.0%
CAAAGTTGCAAGCAATGTCG+AGG - Chr1:77029745-77029764 None:intergenic 45.0%
CAACCTTTGGATTGCAAGCT+TGG + Chr1:77028597-77028616 MsG0180004368.01.T01:CDS 45.0%
CAAGCTTGCAATCCAAAGGT+TGG - Chr1:77028599-77028618 None:intergenic 45.0%
CAAGTAGTTGGCACTGCAAT+GGG + Chr1:77029580-77029599 MsG0180004368.01.T01:CDS 45.0%
CAGAGACAAGTTCACAAGGT+GGG - Chr1:77028781-77028800 None:intergenic 45.0%
CAGGTTCTTTAACTGCGCTT+GGG - Chr1:77028020-77028039 None:intergenic 45.0%
CTTACCTCTTAACCGAACTC+TGG + Chr1:77027891-77027910 MsG0180004368.01.T01:intron 45.0%
CTTCCAAGCTTGCAATCCAA+AGG - Chr1:77028603-77028622 None:intergenic 45.0%
GAGCTTCTTCCTGTTCTACA+AGG + Chr1:77029621-77029640 MsG0180004368.01.T01:CDS 45.0%
GAGGAAAGGTTGCCAGTTAT+AGG + Chr1:77027342-77027361 MsG0180004368.01.T01:CDS 45.0%
GATACCATTACCGATGGTCA+TGG + Chr1:77029837-77029856 MsG0180004368.01.T01:CDS 45.0%
GATATGCACGGGAATCCAAA+TGG + Chr1:77029160-77029179 MsG0180004368.01.T01:CDS 45.0%
GCATGTTTCCTCAGCTGAAA+TGG + Chr1:77029287-77029306 MsG0180004368.01.T01:CDS 45.0%
GCTGAACCTTACAACAGGAA+TGG + Chr1:77027470-77027489 MsG0180004368.01.T01:CDS 45.0%
GGACTACAAACCTTTCTGAG+TGG - Chr1:77028105-77028124 None:intergenic 45.0%
GTTGCAAAGCCACTTGGATA+AGG - Chr1:77028322-77028341 None:intergenic 45.0%
TAGAACAGGAAGAAGCTCAG+AGG - Chr1:77029619-77029638 None:intergenic 45.0%
TAGCTGCTGATGATATGCAC+GGG + Chr1:77029149-77029168 MsG0180004368.01.T01:CDS 45.0%
TATTGCAGGAAGCAAGTGCA+TGG + Chr1:77028485-77028504 MsG0180004368.01.T01:intron 45.0%
TGGAATACAGTTCTTGCTGC+AGG + Chr1:77030280-77030299 MsG0180004368.01.T01:three_prime_UTR 45.0%
TTCTCAGGCAAAGAAGACTG+TGG + Chr1:77028560-77028579 MsG0180004368.01.T01:CDS 45.0%
TTTGCGCTTGTGTGTGTTGT+AGG + Chr1:77027919-77027938 MsG0180004368.01.T01:intron 45.0%
! AGAGCATTCCAATGTGGATC+GGG + Chr1:77029215-77029234 MsG0180004368.01.T01:CDS 45.0%
! CTCGCATTCTGCAATGCTTT+TGG + Chr1:77029346-77029365 MsG0180004368.01.T01:CDS 45.0%
! TAGCATTGCTGTTAGCGGTA+AGG + Chr1:77027638-77027657 MsG0180004368.01.T01:intron 45.0%
! TGCTTCTGGACTAATTTGCG+GGG + Chr1:77029975-77029994 MsG0180004368.01.T01:CDS 45.0%
! TTTTTGCTGGCAACTGTGAC+AGG + Chr1:77029421-77029440 MsG0180004368.01.T01:CDS 45.0%
!! GAGAGCATTCCAATGTGGAT+CGG + Chr1:77029214-77029233 MsG0180004368.01.T01:CDS 45.0%
!! TGAAGGAGAGCATTCCAATG+TGG + Chr1:77029209-77029228 MsG0180004368.01.T01:CDS 45.0%
!!! TTCTGCAATGCTTTTGGAGC+AGG + Chr1:77029352-77029371 MsG0180004368.01.T01:CDS 45.0%
!! AATTAATTAATATTAGATAT+TGG + Chr1:77028216-77028235 MsG0180004368.01.T01:intron 5.0%
!! ATAATACTAATATTAATATA+TGG + Chr1:77029087-77029106 MsG0180004368.01.T01:intron 5.0%
!! TAATACTAATATTAATATAT+GGG + Chr1:77029088-77029107 MsG0180004368.01.T01:intron 5.0%
CCAAGTAGTTGGCACTGCAA+TGG + Chr1:77029579-77029598 MsG0180004368.01.T01:CDS 50.0%
CCAGACATCCAACCAAATGC+AGG - Chr1:77028039-77028058 None:intergenic 50.0%
CCATTGCAGTGCCAACTACT+TGG - Chr1:77029582-77029601 None:intergenic 50.0%
CCTGCATTTGGTTGGATGTC+TGG + Chr1:77028036-77028055 MsG0180004368.01.T01:CDS 50.0%
CCTTTACGCCGATCAACAAG+CGG - Chr1:77028840-77028859 None:intergenic 50.0%
CTTGGAGCTGTGCTCTCTTA+TGG + Chr1:77028804-77028823 MsG0180004368.01.T01:CDS 50.0%
GAGCATTCCAATGTGGATCG+GGG + Chr1:77029216-77029235 MsG0180004368.01.T01:CDS 50.0%
GCAACAGCGGTTCTCATCAA+TGG + Chr1:77028337-77028356 MsG0180004368.01.T01:CDS 50.0%
GCAGAGACAAGTTCACAAGG+TGG - Chr1:77028782-77028801 None:intergenic 50.0%
GCAGGTTCTTTAACTGCGCT+TGG - Chr1:77028021-77028040 None:intergenic 50.0%
GCATTGCAGAATGCGAGAGA+TGG - Chr1:77029343-77029362 None:intergenic 50.0%
GCTAGAGCAAGAATAGCAGC+AGG - Chr1:77030018-77030037 None:intergenic 50.0%
GGAGCAGAGACAAGTTCACA+AGG - Chr1:77028785-77028804 None:intergenic 50.0%
GTGAACTTGTCTCTGCTCCT+TGG + Chr1:77028786-77028805 MsG0180004368.01.T01:CDS 50.0%
GTGTAGTCGAGTTCGATCTC+TGG + Chr1:77027859-77027878 MsG0180004368.01.T01:intron 50.0%
GTGTAGTGGCAGCACTTGTT+GGG + Chr1:77029455-77029474 MsG0180004368.01.T01:CDS 50.0%
TTCAGCTGAGGAAACATGCG+CGG - Chr1:77029286-77029305 None:intergenic 50.0%
! ATTGTCTGGAGTAGGCACTG+AGG + Chr1:77027987-77028006 MsG0180004368.01.T01:CDS 50.0%
! CATAAGAGAGCACAGCTCCA+AGG - Chr1:77028806-77028825 None:intergenic 50.0%
! TAATTTGCGGGGAAGGACTG+TGG + Chr1:77029986-77030005 MsG0180004368.01.T01:CDS 50.0%
! TCCAAGTGGCTTTGCAACAG+CGG + Chr1:77028324-77028343 MsG0180004368.01.T01:CDS 50.0%
! TCTGGACTAATTTGCGGGGA+AGG + Chr1:77029979-77029998 MsG0180004368.01.T01:CDS 50.0%
!! GGGGCTTTGAATTCTCCATG+TGG - Chr1:77029664-77029683 None:intergenic 50.0%
!! TTGTCTGGAGTAGGCACTGA+GGG + Chr1:77027988-77028007 MsG0180004368.01.T01:CDS 50.0%
AACGGTACGGCCATGACCAT+CGG - Chr1:77029850-77029869 None:intergenic 55.0%
ACCGCTGTTGCAAAGCCACT+TGG - Chr1:77028328-77028347 None:intergenic 55.0%
ACGGCCATGACCATCGGTAA+TGG - Chr1:77029844-77029863 None:intergenic 55.0%
CATTCCAATGTGGATCGGGG+TGG + Chr1:77029219-77029238 MsG0180004368.01.T01:CDS 55.0%
GCGCTTGTGTGTGTTGTAGG+AGG + Chr1:77027922-77027941 MsG0180004368.01.T01:intron 55.0%
GCTTTCTTCCAGCAAAGGCG+CGG - Chr1:77027040-77027059 None:intergenic 55.0%
GGTGTAGTGGCAGCACTTGT+TGG + Chr1:77029454-77029473 MsG0180004368.01.T01:CDS 55.0%
TCAGCTGAGGAAACATGCGC+GGG - Chr1:77029285-77029304 None:intergenic 55.0%
TGCCCCTACCAGAAACGGTA+CGG - Chr1:77029863-77029882 None:intergenic 55.0%
TGGATCGGGGTGGTTGGATA+TGG + Chr1:77029229-77029248 MsG0180004368.01.T01:CDS 55.0%
TGGCATACGAACATCGCCCT+GGG - Chr1:77029562-77029581 None:intergenic 55.0%
TTGGCATACGAACATCGCCC+TGG - Chr1:77029563-77029582 None:intergenic 55.0%
! AGCACGACTTTTGTGGGAGC+AGG + Chr1:77028744-77028763 MsG0180004368.01.T01:CDS 55.0%
! CCGCTTGTTGATCGGCGTAA+AGG + Chr1:77028837-77028856 MsG0180004368.01.T01:CDS 55.0%
! TTCCAGCAAAGGCGCGGATA+CGG - Chr1:77027034-77027053 None:intergenic 55.0%
!! ATGGCCGTACCGTTTCTGGT+AGG + Chr1:77029856-77029875 MsG0180004368.01.T01:CDS 55.0%
!! TGGCCGTACCGTTTCTGGTA+GGG + Chr1:77029857-77029876 MsG0180004368.01.T01:CDS 55.0%
ATTGCACACGCACCTCTCCC+AGG + Chr1:77029542-77029561 MsG0180004368.01.T01:CDS 60.0%
CCAACCACCCCGATCCACAT+TGG - Chr1:77029226-77029245 None:intergenic 60.0%
CCAATGTGGATCGGGGTGGT+TGG + Chr1:77029223-77029242 MsG0180004368.01.T01:CDS 60.0%
GGTCATGGCCGTACCGTTTC+TGG + Chr1:77029852-77029871 MsG0180004368.01.T01:CDS 60.0%
TACCGTATCCGCGCCTTTGC+TGG + Chr1:77027029-77027048 MsG0180004368.01.T01:five_prime_UTR 60.0%
TACGAACATCGCCCTGGGAG+AGG - Chr1:77029557-77029576 None:intergenic 60.0%
TTGCACACGCACCTCTCCCA+GGG + Chr1:77029543-77029562 MsG0180004368.01.T01:CDS 60.0%
! GCAAAGGCGCGGATACGGTA+TGG - Chr1:77027029-77027048 None:intergenic 60.0%
! GTGGCAGCACTTGTTGGGTG+TGG + Chr1:77029460-77029479 MsG0180004368.01.T01:CDS 60.0%
!! GGCCGTACCGTTTCTGGTAG+GGG + Chr1:77029858-77029877 MsG0180004368.01.T01:CDS 60.0%
Chromosome Type Strat End Strand Name
Chr1 gene 77026978 77030492 77026978 ID=MsG0180004368.01;Name=MsG0180004368.01
Chr1 mRNA 77026978 77030492 77026978 ID=MsG0180004368.01.T01;Parent=MsG0180004368.01;Name=MsG0180004368.01.T01;_AED=0.33;_eAED=0.33;_QI=168|1|1|1|0.83|0.71|7|412|680
Chr1 exon 77026978 77027125 77026978 ID=MsG0180004368.01.T01:exon:14836;Parent=MsG0180004368.01.T01
Chr1 exon 77027235 77027654 77027235 ID=MsG0180004368.01.T01:exon:14837;Parent=MsG0180004368.01.T01
Chr1 exon 77027941 77028113 77027941 ID=MsG0180004368.01.T01:exon:14838;Parent=MsG0180004368.01.T01
Chr1 exon 77028295 77028389 77028295 ID=MsG0180004368.01.T01:exon:14839;Parent=MsG0180004368.01.T01
Chr1 exon 77028493 77028627 77028493 ID=MsG0180004368.01.T01:exon:14840;Parent=MsG0180004368.01.T01
Chr1 exon 77028728 77029032 77028728 ID=MsG0180004368.01.T01:exon:14841;Parent=MsG0180004368.01.T01
Chr1 exon 77029146 77030492 77029146 ID=MsG0180004368.01.T01:exon:14842;Parent=MsG0180004368.01.T01
Chr1 five_prime_UTR 77026978 77027125 77026978 ID=MsG0180004368.01.T01:five_prime_utr;Parent=MsG0180004368.01.T01
Chr1 five_prime_UTR 77027235 77027254 77027235 ID=MsG0180004368.01.T01:five_prime_utr;Parent=MsG0180004368.01.T01
Chr1 CDS 77027255 77027654 77027255 ID=MsG0180004368.01.T01:cds;Parent=MsG0180004368.01.T01
Chr1 CDS 77027941 77028113 77027941 ID=MsG0180004368.01.T01:cds;Parent=MsG0180004368.01.T01
Chr1 CDS 77028295 77028389 77028295 ID=MsG0180004368.01.T01:cds;Parent=MsG0180004368.01.T01
Chr1 CDS 77028493 77028627 77028493 ID=MsG0180004368.01.T01:cds;Parent=MsG0180004368.01.T01
Chr1 CDS 77028728 77029032 77028728 ID=MsG0180004368.01.T01:cds;Parent=MsG0180004368.01.T01
Chr1 CDS 77029146 77030080 77029146 ID=MsG0180004368.01.T01:cds;Parent=MsG0180004368.01.T01
Chr1 three_prime_UTR 77030081 77030492 77030081 ID=MsG0180004368.01.T01:three_prime_utr;Parent=MsG0180004368.01.T01
Gene Sequence

>MsG0180004368.01.T01

ATGATTTCTCCATCAAGTCCACTAAACATCAACATGGAATTTGGTGAGAAAAAAATGGAAATTGAAAGAGATATTAATCAGAACATGGAGGAAAGGTTGCCAGTTATAGGAGCTGAAATAATCCAATCTGATGAACATTGGACAGAACACATAACAATAAGAGGATTGTTTGTGAGTATGATGATTGGAATAATATATAGTATAATAGCAATGAAGCTGAACCTTACAACAGGAATGGTTCCAAATTTGAATGTCTCTGCTGCTTTACTTGCTTTTGTGTTTGTAAGAAGTTGGACTAAAGTGCTTGAAAAAGCTGGCTTTGTTTCTAAGCCATTCACTCGCCAAGAAAATACCATTATTCAGACTTGTGCTGTTGCTTGTTATAGCATTGCTGTTAGCGGAGGATTTGCTTCTTACCTGTTGGGATTAAACAGGAAGACATATATATTGTCTGGAGTAGGCACTGAGGGTAACAACCCAAGCGCAGTTAAAGAACCTGCATTTGGTTGGATGTCTGGTTTCCTTTTTGTTGTTTGCTTTGTTGGACTCTTTGTCTTAATTCCACTCAGAAAGGTCTTGATAGTTGACCTCAATTTACCTTATCCAAGTGGCTTTGCAACAGCGGTTCTCATCAATGGTTTTCACACACAGGATGATAAAATGGCCAAGAAGCAAGTGCATGGATTCATGAAGTATTTTTCAATCAGTTTCTTATGGGGTTTCTTTAAGTGGTTTTTCTCAGGCAAAGAAGACTGTGGATTTGAACAGTTTCCAACCTTTGGATTGCAAGCTTGGAAGAACACATTTTATTTCGATTTTAGCACGACTTTTGTGGGAGCAGGAATGATATGCTCCCACCTTGTGAACTTGTCTCTGCTCCTTGGAGCTGTGCTCTCTTATGGAGTTATGTATCCGCTTGTTGATCGGCGTAAAGGAAATTGGTTCCCTGAAAACTTAGAAGAAACTAACATGAAGGGTTTATATGGTTATAAGGTTTTTCTATCAATTGCTCTAATCCTTGGTGATGGCGTATATACTTTCACCAAGATTCTAGTTTCAACTGTCCTTGGCGTACATGAAAGAATCAAGAGCAAGAACCATAAAAAGGAATTAGCTGCTGATGATATGCACGGGAATCCAAATGGTGACCTTAAACAAGCTCAAACATTCTTGAAGGAGAGCATTCCAATGTGGATCGGGGTGGTTGGATATGGCGTCTTCACAACAATTTCGATAATTATAATCCCGCGCATGTTTCCTCAGCTGAAATGGTACTATGTCATTGTCGCTTACGTATTTGCTCCATCTCTCGCATTCTGCAATGCTTTTGGAGCAGGTCTCACCGATATAAACATGGCATATAATTACGGGAAAGTTGCACTATTTTTGCTGGCAACTGTGACAGGAAAAGAGAATGGTGTAGTGGCAGCACTTGTTGGGTGTGGTCTCATTAAATCCGTGATCTCGGTGTCTTGCAATCTGATGCAAGATTTCAAAACTGCTCATTGCACACGCACCTCTCCCAGGGCGATGTTCGTATGCCAAGTAGTTGGCACTGCAATGGGGTGTATATGCTGTCCTCTGAGCTTCTTCCTGTTCTACAAGGCATTTGATGTGGGAAATCCACATGGAGAATTCAAAGCCCCTTATGCGCTAATTTACAGAAACATGGCAGTTATAGGGGTTCAAGGTTTCTCAGCACTACCTCGACATTGCTTGCAACTTTGTTTTGGGTTCTTTGCTTTTGCAATAGGAACAAACATGTTAAGAGATTTTTCACCCAAAAAGATTGGGAAATGGATACCATTACCGATGGTCATGGCCGTACCGTTTCTGGTAGGGGCATACTTTGCAATTGATATGTGCACAGGTAGTTTGGTTGTGTTCGTGTTGCACAAGCTTAACTCCAAGAAAGCAGAGTTGATGATTCCAGCAATTGCTTCTGGACTAATTTGCGGGGAAGGACTGTGGACTCTTCCTGCTGCTATTCTTGCTCTAGCGAAAATTAATCCGCCTATCTGCATGAAATTTGTTACTTCATAA
Protein sequence

>MsG0180004368.01.T01

MISPSSPLNINMEFGEKKMEIERDINQNMEERLPVIGAEIIQSDEHWTEHITIRGLFVSMMIGIIYSIIAMKLNLTTGMVPNLNVSAALLAFVFVRSWTKVLEKAGFVSKPFTRQENTIIQTCAVACYSIAVSGGFASYLLGLNRKTYILSGVGTEGNNPSAVKEPAFGWMSGFLFVVCFVGLFVLIPLRKVLIVDLNLPYPSGFATAVLINGFHTQDDKMAKKQVHGFMKYFSISFLWGFFKWFFSGKEDCGFEQFPTFGLQAWKNTFYFDFSTTFVGAGMICSHLVNLSLLLGAVLSYGVMYPLVDRRKGNWFPENLEETNMKGLYGYKVFLSIALILGDGVYTFTKILVSTVLGVHERIKSKNHKKELAADDMHGNPNGDLKQAQTFLKESIPMWIGVVGYGVFTTISIIIIPRMFPQLKWYYVIVAYVFAPSLAFCNAFGAGLTDINMAYNYGKVALFLLATVTGKENGVVAALVGCGLIKSVISVSCNLMQDFKTAHCTRTSPRAMFVCQVVGTAMGCICCPLSFFLFYKAFDVGNPHGEFKAPYALIYRNMAVIGVQGFSALPRHCLQLCFGFFAFAIGTNMLRDFSPKKIGKWIPLPMVMAVPFLVGAYFAIDMCTGSLVVFVLHKLNSKKAELMIPAIASGLICGEGLWTLPAAILALAKINPPICMKFVTS*