AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0180004281.01

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0180004281.01.T01 MTR_1g076400 97.730 1013 23 0 1 1013 1 1013 0.0 2016
MsG0180004281.01.T01 MTR_7g117890 28.755 1012 669 19 18 1005 16 999 3.92e-112 371
MsG0180004281.01.T01 MTR_8g027140 28.208 1021 683 20 8 1005 11 1004 2.54e-108 360
MsG0180004281.01.T01 MTR_1g040955 65.455 165 55 2 598 762 12 174 1.08e-57 196
MsG0180004281.01.T01 MTR_1g040985 66.667 138 45 1 596 733 78 214 1.03e-50 179
MsG0180004281.01.T01 MTR_3g115670 26.792 795 511 33 258 999 26 802 2.74e-46 179
MsG0180004281.01.T01 MTR_3g019360 28.031 635 402 18 392 1005 225 825 3.45e-44 173
MsG0180004281.01.T01 MTR_1g040915 72.917 96 25 1 600 695 167 261 5.05e-35 135
MsG0180004281.01.T01 MTR_1g040915 71.014 69 20 0 96 164 1 69 3.06e-22 98.6
MsG0180004281.01.T01 MTR_1g094215 21.997 591 384 15 32 600 31 566 2.05e-13 74.7
MsG0180004281.01.T01 MTR_4g063800 23.583 547 357 18 91 618 84 588 2.11e-13 74.7
MsG0180004281.01.T01 MTR_7g116600 38.202 89 55 0 239 327 56 144 1.52e-12 71.6
MsG0180004281.01.T01 MTR_4g485520 25.360 347 219 10 265 600 109 426 8.33e-12 69.3
MsG0180004281.01.T01 MTR_4g485520 25.360 347 219 10 265 600 277 594 1.28e-11 68.9
MsG0180004281.01.T01 MTR_1g094215 26.359 368 224 11 249 600 47 383 2.20e-11 67.8
MsG0180004281.01.T01 MTR_5g034440 23.729 295 206 6 47 331 65 350 9.16e-11 66.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0180004281.01.T01 AT1G76390 27.595 761 470 29 264 965 28 766 1.03e-37 153
MsG0180004281.01.T01 AT1G76390 27.595 761 470 29 264 965 28 766 1.03e-37 153
MsG0180004281.01.T01 AT1G20780 26.826 753 488 29 264 968 26 763 1.29e-36 149
MsG0180004281.01.T01 AT1G20780 26.826 753 488 29 264 968 26 763 1.29e-36 149
MsG0180004281.01.T01 AT1G20780 26.826 753 488 29 264 968 26 763 1.29e-36 149
MsG0180004281.01.T01 AT1G68940 23.258 1062 697 33 35 999 37 1077 1.04e-34 144
MsG0180004281.01.T01 AT1G68940 23.202 1043 685 32 35 982 37 1058 7.16e-34 141
MsG0180004281.01.T01 AT1G68940 25.131 764 508 26 261 973 246 996 1.69e-31 134
MsG0180004281.01.T01 AT3G46510 22.978 544 343 22 85 600 80 575 5.05e-12 70.5
MsG0180004281.01.T01 AT1G71020 25.067 371 228 12 265 616 99 438 5.98e-12 69.7
MsG0180004281.01.T01 AT1G71020 25.067 371 228 12 265 616 247 586 8.48e-12 69.7
MsG0180004281.01.T01 AT3G54790 24.643 280 179 10 70 347 67 316 1.04e-11 69.7
MsG0180004281.01.T01 AT3G54790 24.643 280 179 10 70 347 67 316 1.04e-11 69.7
MsG0180004281.01.T01 AT3G54790 24.643 280 179 10 70 347 31 280 1.85e-11 68.9
MsG0180004281.01.T01 AT3G52450 30.496 141 81 2 265 388 11 151 1.89e-11 68.2
MsG0180004281.01.T01 AT2G23140 29.213 178 110 3 154 331 142 303 3.31e-11 68.2
MsG0180004281.01.T01 AT2G23140 29.213 178 110 3 154 331 139 300 3.36e-11 68.2
MsG0180004281.01.T01 AT2G23140 29.213 178 110 3 154 331 139 300 3.36e-11 68.2

Find 209 sgRNAs with CRISPR-Local

Find 249 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCAAGAACCTCTTGTGTTTC+TGG 0.059826 1:-75982028 None:intergenic
GCAGCAGCTGATGTTCTTAT+TGG 0.181583 1:+75981197 MsG0180004281.01.T01:CDS
GGCAAAAGCCATAGTTAATT+TGG 0.187215 1:+75983111 MsG0180004281.01.T01:CDS
GGCAGAAGCTTTAGGACTTT+TGG 0.205522 1:+75984371 MsG0180004281.01.T01:CDS
CCTTAGCAGCTTTCCTTCTA+AGG 0.210627 1:-75984494 None:intergenic
AAATGCAATGAGACCTTTAT+TGG 0.217381 1:+75984317 MsG0180004281.01.T01:CDS
TTGACCGGCAGTAATATTTA+TGG 0.222346 1:+75984462 MsG0180004281.01.T01:CDS
CATCTTCACTTCTCTGTCAT+TGG 0.229854 1:-75982278 None:intergenic
CTGTTGCAAAACTAGCAATT+TGG 0.235539 1:-75983455 None:intergenic
GTTAGTTCTCGTTCGGATTT+TGG 0.239898 1:-75983796 None:intergenic
ATCAAAGCTTCTAGCCTTCT+AGG 0.241589 1:-75983706 None:intergenic
ACCTCTGCTGAATCGTTTCC+AGG 0.248782 1:-75982684 None:intergenic
ATCTGCAATCTCTGGAGTTT+TGG 0.262837 1:+75984554 MsG0180004281.01.T01:CDS
CTCTTGAAGCAGATGTTAAA+AGG 0.268785 1:+75981333 MsG0180004281.01.T01:CDS
CATTGCTTGAACGTTATTCT+AGG 0.272811 1:+75984523 MsG0180004281.01.T01:CDS
AACAAGGATTGGATCTCTAT+TGG 0.289337 1:+75982217 MsG0180004281.01.T01:CDS
TCACTTAAGGCAGAAGCTTT+AGG 0.292250 1:+75984363 MsG0180004281.01.T01:CDS
CCAACGCTACGTGCTCTTCT+TGG 0.306871 1:+75983508 MsG0180004281.01.T01:CDS
TCTTCGATCGATTGTCTTAG+TGG 0.313992 1:-75982076 None:intergenic
CCGCATAAACGGAGCTGTTA+TGG 0.327966 1:+75981922 MsG0180004281.01.T01:CDS
ACAAGGATTGGATCTCTATT+GGG 0.328260 1:+75982218 MsG0180004281.01.T01:CDS
AGAAAGTTTCTCGAGGATTT+CGG 0.337226 1:-75983362 None:intergenic
TATCGAGTCACAGCGCGATT+TGG 0.345338 1:+75983936 MsG0180004281.01.T01:CDS
AACTACAAAGTTGATTGAAA+TGG 0.346902 1:+75983816 MsG0180004281.01.T01:CDS
ACGCTCTCAGTGCACTCTTC+AGG 0.348203 1:+75983896 MsG0180004281.01.T01:CDS
TGTTAAAAGGGCGAATAATA+TGG 0.357230 1:+75981346 MsG0180004281.01.T01:CDS
AACACTTTCTACATTGGTAT+TGG 0.361873 1:+75984254 MsG0180004281.01.T01:CDS
CAGCTATTAGAGCCTGCATT+TGG 0.370250 1:-75982183 None:intergenic
TAACAAATCAATTGCTGCCT+TGG 0.372173 1:-75982559 None:intergenic
ACAGTTAATATTGTACCTAT+TGG 0.373426 1:-75981143 None:intergenic
GTTTCTGATCTCTTAGTCCT+TGG 0.375417 1:-75981601 None:intergenic
AAACCAGCAACCGCTTGGTT+TGG 0.375908 1:-75984082 None:intergenic
TCAATACTTTGAAAGGGTTC+AGG 0.379007 1:+75981841 MsG0180004281.01.T01:CDS
AGGTATTCAACTACTCCTTC+TGG 0.379870 1:-75983676 None:intergenic
GCCATTGATATTCTTGAATC+CGG 0.380624 1:-75983091 None:intergenic
GACCTTTCTTTATCAGCCTT+GGG 0.385289 1:+75983223 MsG0180004281.01.T01:CDS
GGAATTGATTTCTTTGTTGA+TGG 0.386950 1:+75983397 MsG0180004281.01.T01:CDS
ATCCAACACCAAATTAACTA+TGG 0.387861 1:-75983119 None:intergenic
GGATCATATTATTTCGTGCT+TGG 0.390606 1:+75982518 MsG0180004281.01.T01:CDS
AACTAGCAATTTGGTGATGA+TGG 0.392035 1:-75983446 None:intergenic
GAACTGGCTCAATATCAAAT+AGG 0.394193 1:-75981250 None:intergenic
GTTCCTGTGGAAAGGCTAAC+AGG 0.396841 1:-75981950 None:intergenic
AGACCTTTCTTTATCAGCCT+TGG 0.397586 1:+75983222 MsG0180004281.01.T01:CDS
TTAGAGCCTGCATTTGGCTC+AGG 0.401778 1:-75982177 None:intergenic
CTTTGTAGTTAGTTCTCGTT+CGG 0.401965 1:-75983803 None:intergenic
AACATCAAATCTAGAATAAG+AGG 0.405447 1:-75983301 None:intergenic
GAAAAGAGTTGGCCAGCATT+AGG 0.407138 1:+75981702 MsG0180004281.01.T01:CDS
AGAAGGCTAGAAGCTTTGAT+TGG 0.408094 1:+75983709 MsG0180004281.01.T01:CDS
CGCTGTGACTCGATATTTGT+AGG 0.409793 1:-75983928 None:intergenic
TTTCCAAACCAAGCGGTTGC+TGG 0.410881 1:+75984079 MsG0180004281.01.T01:CDS
AAAATTCTATTAACAAGGAT+TGG 0.412160 1:+75982206 MsG0180004281.01.T01:CDS
TCTTTCCTTTGCCGCATAAA+CGG 0.416779 1:+75981911 MsG0180004281.01.T01:CDS
CTGCTCCAAGAAAACAAATT+CGG 0.420958 1:-75981762 None:intergenic
GACTCTAGAGCAACTCTAGC+AGG 0.426038 1:-75981311 None:intergenic
AGCTGTAATTCCTTTAGAAC+TGG 0.426952 1:-75981266 None:intergenic
CGACAATGATAATGTACAAA+TGG 0.431176 1:+75983747 MsG0180004281.01.T01:CDS
GATACCGTTATCTCGATCCT+TGG 0.434218 1:+75982250 MsG0180004281.01.T01:CDS
TTAAGAATCAATACTTTGAA+AGG 0.434740 1:+75981834 MsG0180004281.01.T01:CDS
ACTACAAAGTTGATTGAAAT+GGG 0.437763 1:+75983817 MsG0180004281.01.T01:CDS
AAGGAAATGGTGGAATACTA+TGG 0.438629 1:+75984411 MsG0180004281.01.T01:CDS
TGATATTGAGCCAGTTCTAA+AGG 0.439774 1:+75981256 MsG0180004281.01.T01:CDS
GGCATTTGCAAGTTCGAGAC+TGG 0.440948 1:+75983529 MsG0180004281.01.T01:CDS
CATGAGCAGTTCTCAAGACT+TGG 0.442224 1:-75981175 None:intergenic
ATGGAGACGGACACCTTAGA+AGG 0.442619 1:+75984481 MsG0180004281.01.T01:CDS
GATTTAAACTTGATACAACT+TGG 0.449112 1:+75983142 MsG0180004281.01.T01:CDS
TTGCAAGTTCGAGACTGGTT+TGG 0.450043 1:+75983534 MsG0180004281.01.T01:CDS
CTATCATGAGCTGCACATAA+AGG 0.455630 1:-75984123 None:intergenic
TCTTCATCATCTGCAATCTC+TGG 0.456840 1:+75984546 MsG0180004281.01.T01:CDS
AAGGGATATCGGAAGGTCTC+TGG 0.458262 1:+75981448 MsG0180004281.01.T01:CDS
GAGCAAGTTACAAGGGATAT+CGG 0.462903 1:+75981437 MsG0180004281.01.T01:CDS
CAAGTCAAAATCTCCAATAA+AGG 0.465556 1:-75984330 None:intergenic
CTAGCCTTCTAGGCTTGAAA+AGG 0.472124 1:-75983696 None:intergenic
ATTTCTTTGTTGATGGAGAA+GGG 0.472359 1:+75983404 MsG0180004281.01.T01:CDS
TCAGCCTTGGGTAAACTAGC+TGG 0.474331 1:+75983235 MsG0180004281.01.T01:CDS
TTGGGGTAGTGAGTCACTTA+AGG 0.479262 1:+75984350 MsG0180004281.01.T01:CDS
GGTCCTTCACAAGGGTTACA+AGG 0.481227 1:-75982662 None:intergenic
CTCTAGAGCTGATGCAGCAA+GGG 0.481825 1:+75981799 MsG0180004281.01.T01:CDS
TAGATTTGATGTTCTCTCCT+CGG 0.486570 1:+75983311 MsG0180004281.01.T01:CDS
TAAGAATCAATACTTTGAAA+GGG 0.486686 1:+75981835 MsG0180004281.01.T01:CDS
TGCAAGGGCAGTTGGCGTGC+CGG 0.487076 1:+75981661 MsG0180004281.01.T01:CDS
GGATTGGAACTCATACCAAT+AGG 0.487791 1:+75981128 MsG0180004281.01.T01:CDS
CGTTTCCAGGGTCCTTCACA+AGG 0.487815 1:-75982671 None:intergenic
TATTGGAAAAGAGAGTTTCA+AGG 0.490061 1:+75981214 MsG0180004281.01.T01:CDS
CCTATCTCGGATGGTTCCAC+CGG 0.490488 1:-75981680 None:intergenic
ACGAAGGTTGTGACCTGAGT+TGG 0.490630 1:-75983482 None:intergenic
GCTATCGAGAATTTCTGATC+AGG 0.493655 1:+75981499 MsG0180004281.01.T01:CDS
TTGAGAAAATCAACAAGTAA+AGG 0.494414 1:-75983976 None:intergenic
GATGCAAAGGGTTGAGTTCG+AGG 0.494531 1:+75981541 MsG0180004281.01.T01:CDS
AGCCATAGTTAATTTGGTGT+TGG 0.494995 1:+75983117 MsG0180004281.01.T01:CDS
GTATGTCATTCGCGAAAGCC+TGG 0.495334 1:-75981628 None:intergenic
AAGGGAATTATTGCTTCCTC+CGG 0.497226 1:+75983271 MsG0180004281.01.T01:CDS
CTAGCTGATCGCATGATTCG+AGG 0.500921 1:+75982789 MsG0180004281.01.T01:CDS
CCTTAGAAGGAAAGCTGCTA+AGG 0.501027 1:+75984494 MsG0180004281.01.T01:CDS
CTCTGTCATTGGACTTCCCA+AGG 0.507482 1:-75982267 None:intergenic
TTGGAAATAACTGTGAGCTT+TGG 0.507616 1:-75984063 None:intergenic
GACTACAAGGTGAGATGCAA+AGG 0.508604 1:+75981528 MsG0180004281.01.T01:CDS
GAGGAGATTGCAAGGGCAGT+TGG 0.509609 1:+75981653 MsG0180004281.01.T01:CDS
GATTTCTTTGTTGATGGAGA+AGG 0.512649 1:+75983403 MsG0180004281.01.T01:CDS
ATACCGTTATCTCGATCCTT+GGG 0.513686 1:+75982251 MsG0180004281.01.T01:CDS
AGCTGGATCTCATGCTAACA+AGG 0.519513 1:+75983252 MsG0180004281.01.T01:CDS
TCTACTTGCTAGTTAAATGC+CGG 0.520480 1:+75981396 MsG0180004281.01.T01:CDS
CTTCCCAAGGATCGAGATAA+CGG 0.521135 1:-75982254 None:intergenic
TACCCAAGGCTGATAAAGAA+AGG 0.521431 1:-75983225 None:intergenic
CCTTTGATAGAAATGATGTC+TGG 0.521661 1:+75983184 MsG0180004281.01.T01:CDS
TAGAGCCTGCATTTGGCTCA+GGG 0.522213 1:-75982176 None:intergenic
AATGTACAAATGGCTGCAGC+TGG 0.523529 1:+75983757 MsG0180004281.01.T01:CDS
AGGACTAAGAGATCAGAAAC+AGG 0.524044 1:+75981604 MsG0180004281.01.T01:CDS
CCGGTGGAACCATCCGAGAT+AGG 0.527413 1:+75981680 MsG0180004281.01.T01:CDS
TATCATTGTCGTCGTTCTCG+AGG 0.528609 1:-75983735 None:intergenic
CGGCAAAGGAAAGAATTAAG+AGG 0.530404 1:-75981902 None:intergenic
AGAGATCAGCTATTGAAGGT+TGG 0.530598 1:+75981981 MsG0180004281.01.T01:CDS
TTGGAAGCAAATGCTTTACC+TGG 0.532479 1:+75984177 MsG0180004281.01.T01:CDS
ACCGGATTCAAGAATATCAA+TGG 0.533121 1:+75983090 MsG0180004281.01.T01:CDS
AAACTTGATACAACTTGGAA+AGG 0.535362 1:+75983147 MsG0180004281.01.T01:CDS
AATACAAACACTTTCTACAT+TGG 0.535747 1:+75984248 MsG0180004281.01.T01:CDS
GCAATTGCAGCAGCTTTCAT+CGG 0.538108 1:+75984021 MsG0180004281.01.T01:CDS
TCACTGCTGCTAATTGTGGC+TGG 0.538398 1:+75982757 MsG0180004281.01.T01:CDS
TGTGAGAGATCAGCTATTGA+AGG 0.539191 1:+75981977 MsG0180004281.01.T01:CDS
GGAATTATTGCTTCCTCCGG+AGG 0.539312 1:+75983274 MsG0180004281.01.T01:CDS
TGATGTTCTCTCCTCGGACA+AGG 0.543610 1:+75983317 MsG0180004281.01.T01:CDS
CCAGACATCATTTCTATCAA+AGG 0.545276 1:-75983184 None:intergenic
TTGATACAACTTGGAAAGGA+AGG 0.545563 1:+75983151 MsG0180004281.01.T01:CDS
AGGAAGTTGAGCAAGTTACA+AGG 0.548285 1:+75981429 MsG0180004281.01.T01:CDS
TCTTGAAGCAGATGTTAAAA+GGG 0.550180 1:+75981334 MsG0180004281.01.T01:CDS
AAACTTTCTTCTTCTGACGA+TGG 0.550475 1:+75983376 MsG0180004281.01.T01:CDS
AGAATCCCTGAGCCAAATGC+AGG 0.550783 1:+75982171 MsG0180004281.01.T01:CDS
GATAGAGAGATACGATTCAA+AGG 0.551367 1:+75981865 MsG0180004281.01.T01:CDS
GAGTTGCTTCAAGAAAGATC+TGG 0.552357 1:+75982585 MsG0180004281.01.T01:CDS
AATTGGCTGAATCACAAGGA+TGG 0.555747 1:+75982496 MsG0180004281.01.T01:CDS
GATCCTGTTAGCCTTTCCAC+AGG 0.555922 1:+75981947 MsG0180004281.01.T01:CDS
CAGCTCCGTTTATGCGGCAA+AGG 0.557270 1:-75981916 None:intergenic
GATAAAGCTGTTACATGGTG+AGG 0.558362 1:+75984203 MsG0180004281.01.T01:CDS
GTCTCCATAAATATTACTGC+CGG 0.561473 1:-75984466 None:intergenic
CACATGTAGTTCCTGTGGAA+AGG 0.563701 1:-75981958 None:intergenic
TTCTCTCAGCATGAACCAGA+AGG 0.565766 1:+75983661 MsG0180004281.01.T01:CDS
GTAACCCTTGTGAAGGACCC+TGG 0.565954 1:+75982666 MsG0180004281.01.T01:CDS
AGCTGAAAATTCTATTAACA+AGG 0.570382 1:+75982201 MsG0180004281.01.T01:CDS
ATTGGCTGAATCACAAGGAT+GGG 0.570651 1:+75982497 MsG0180004281.01.T01:CDS
ATTGGAAGAGCATCCGCAGA+GGG 0.571893 1:+75984272 MsG0180004281.01.T01:CDS
AAAGGAAAGAATTAAGAGGT+TGG 0.572084 1:-75981898 None:intergenic
ACTTTGAAAGATGTTGTAGA+GGG 0.572945 1:+75982313 MsG0180004281.01.T01:CDS
CCAAGAAGAGCACGTAGCGT+TGG 0.573594 1:-75983508 None:intergenic
GAGTCAGAATCATCAAGAAG+TGG 0.574190 1:-75983601 None:intergenic
CAAGGATTGGATCTCTATTG+GGG 0.575873 1:+75982219 MsG0180004281.01.T01:CDS
AAAGCAATTCTTGCAGCCAA+TGG 0.577003 1:+75983562 MsG0180004281.01.T01:CDS
TTGCTCAACTTCCTCGACAA+TGG 0.577351 1:-75981420 None:intergenic
CCTCTGCTGAATCGTTTCCA+GGG 0.579125 1:-75982683 None:intergenic
GCTGAGAGAAAAGAAAGAGC+AGG 0.581887 1:-75983648 None:intergenic
TGCTTCAAGAAAGATCTGGT+TGG 0.583477 1:+75982589 MsG0180004281.01.T01:CDS
ATTTAACTAGCAAGTAGAAA+CGG 0.583722 1:-75981391 None:intergenic
GGCAGTAATATTTATGGAGA+CGG 0.583777 1:+75984468 MsG0180004281.01.T01:CDS
TAGAATAAGAGGAACACCTC+CGG 0.584174 1:-75983290 None:intergenic
CACTTTGAAAGATGTTGTAG+AGG 0.586417 1:+75982312 MsG0180004281.01.T01:CDS
CCATAACAGCTCCGTTTATG+CGG 0.587162 1:-75981922 None:intergenic
AAGGGCAGTTGGCGTGCCGG+TGG 0.588235 1:+75981664 MsG0180004281.01.T01:CDS
ATTGTCACTGCTGCTAATTG+TGG 0.588383 1:+75982753 MsG0180004281.01.T01:CDS
TTGCAACAGAATTCCAACTC+AGG 0.589919 1:+75983469 MsG0180004281.01.T01:CDS
TCGCGTTTGATTTGTTTGAC+CGG 0.589935 1:+75984447 MsG0180004281.01.T01:CDS
TAACCTTGTAACCCTTGTGA+AGG 0.590842 1:+75982659 MsG0180004281.01.T01:CDS
ATCCGAGATAGGAAAAGAGT+TGG 0.592571 1:+75981691 MsG0180004281.01.T01:CDS
CGAATCATGCGATCAGCTAG+TGG 0.593637 1:-75982786 None:intergenic
AGAGTTGGCCAGCATTAGGA+AGG 0.594767 1:+75981706 MsG0180004281.01.T01:CDS
GAGAAATTGGCTGAATCACA+AGG 0.594803 1:+75982492 MsG0180004281.01.T01:CDS
GCAGGTTTATAGCAGTCTCT+CGG 0.596490 1:-75983630 None:intergenic
ACTACAAGGTGAGATGCAAA+GGG 0.597147 1:+75981529 MsG0180004281.01.T01:CDS
GATCAGGTTGATAGACTACA+AGG 0.597370 1:+75981515 MsG0180004281.01.T01:CDS
ACATACTTGAGGAGATTGCA+AGG 0.599820 1:+75981645 MsG0180004281.01.T01:CDS
CACGTAGCGTTGGCTTACGA+AGG 0.602202 1:-75983498 None:intergenic
TCTCTAGAGCTGATGCAGCA+AGG 0.604293 1:+75981798 MsG0180004281.01.T01:CDS
TACAGGTTCAATCACTGCAA+AGG 0.608049 1:+75983999 MsG0180004281.01.T01:CDS
TTCCAATAGACAAAATGTTG+TGG 0.608354 1:-75984160 None:intergenic
TCTCTCACATGTAGTTCCTG+TGG 0.611431 1:-75981963 None:intergenic
TGGAAACGATTCAGCAGAGG+TGG 0.613714 1:+75982686 MsG0180004281.01.T01:CDS
AAGAATTAGAGATACACCAT+TGG 0.614299 1:-75983578 None:intergenic
CAACTTCCTCGACAATGGAC+CGG 0.616683 1:-75981415 None:intergenic
GGTTTGATAAAGCTGTTACA+TGG 0.619938 1:+75984198 MsG0180004281.01.T01:CDS
AAGCAACTCTAACATTTCCA+AGG 0.624995 1:+75982542 MsG0180004281.01.T01:CDS
TAAGACAATCGATCGAAGAG+TGG 0.630519 1:+75982080 MsG0180004281.01.T01:CDS
AAGAGATCAGAAACAGGACC+AGG 0.632504 1:+75981610 MsG0180004281.01.T01:CDS
AGATCCAGCTAGTTTACCCA+AGG 0.633345 1:-75983239 None:intergenic
AAGTTACAAGGGATATCGGA+AGG 0.635464 1:+75981441 MsG0180004281.01.T01:CDS
TTCTTGAAGATACTAGCTTG+AGG 0.637093 1:+75982044 MsG0180004281.01.T01:CDS
GGATTGGATCTCTATTGGGG+AGG 0.641735 1:+75982222 MsG0180004281.01.T01:CDS
TGTAACAGCTTTATCAAACC+AGG 0.642306 1:-75984195 None:intergenic
CAGAAGAAGAAAGTTTCTCG+AGG 0.644334 1:-75983369 None:intergenic
ATTGTTGACAAGTTGAACCA+AGG 0.644614 1:+75981584 MsG0180004281.01.T01:CDS
GGAAGTTGAGCAAGTTACAA+GGG 0.644907 1:+75981430 MsG0180004281.01.T01:CDS
AACTGATCCAGAAACACAAG+AGG 0.645279 1:+75982021 MsG0180004281.01.T01:CDS
AGAGGGGCATGCAAGAAACA+AGG 0.645650 1:+75982330 MsG0180004281.01.T01:CDS
CCCTGGAAACGATTCAGCAG+AGG 0.647958 1:+75982683 MsG0180004281.01.T01:CDS
TTTCGCGAATGACATACTTG+AGG 0.650871 1:+75981634 MsG0180004281.01.T01:CDS
GTTTCCAGGGTCCTTCACAA+GGG 0.658541 1:-75982670 None:intergenic
TAAATGCCGGTCCATTGTCG+AGG 0.660709 1:+75981409 MsG0180004281.01.T01:CDS
ACAGTTATTTCCAAACCAAG+CGG 0.662952 1:+75984072 MsG0180004281.01.T01:CDS
CTTTGAAAGATGTTGTAGAG+GGG 0.675379 1:+75982314 MsG0180004281.01.T01:CDS
AATAAGAGGAACACCTCCGG+AGG 0.680566 1:-75983287 None:intergenic
GTAATGAATGACCTTGTCCG+AGG 0.681100 1:-75983328 None:intergenic
TATGAGTTCCAATCCTACCA+TGG 0.683552 1:-75981120 None:intergenic
GCTGGATCTCATGCTAACAA+GGG 0.684666 1:+75983253 MsG0180004281.01.T01:CDS
AATAGGTACAATATTAACTG+TGG 0.686641 1:+75981145 MsG0180004281.01.T01:CDS
ACAAAGTTGATTGAAATGGG+AGG 0.690277 1:+75983820 MsG0180004281.01.T01:CDS
CAGCGCGATTTGGTTAAACG+CGG 0.693546 1:+75983946 MsG0180004281.01.T01:CDS
AACAAACGAGCACCCCTCTG+CGG 0.694775 1:-75984285 None:intergenic
CATACTTGAGGAGATTGCAA+GGG 0.701171 1:+75981646 MsG0180004281.01.T01:CDS
CTAGCAAGTAGAAACGGCCA+CGG 0.705648 1:-75981385 None:intergenic
GGTGGAATACTATGGAACGA+CGG 0.715990 1:+75984419 MsG0180004281.01.T01:CDS
GTTGAGAAGTACAAGAACCG+TGG 0.724475 1:+75981368 MsG0180004281.01.T01:CDS
TATTGGAAGAGCATCCGCAG+AGG 0.727150 1:+75984271 MsG0180004281.01.T01:CDS
TTGGAAGAGCATCCGCAGAG+GGG 0.744656 1:+75984273 MsG0180004281.01.T01:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAAATGTAATAGGAGAAAT+TGG + Chr1:75982479-75982498 MsG0180004281.01.T01:intron 20.0%
!! AAAATTCTATTAACAAGGAT+TGG + Chr1:75982206-75982225 MsG0180004281.01.T01:CDS 20.0%
!! CATTTGCATAAAAATGTAAT+AGG + Chr1:75982470-75982489 MsG0180004281.01.T01:intron 20.0%
!! TTAAGAATCAATACTTTGAA+AGG + Chr1:75981834-75981853 MsG0180004281.01.T01:CDS 20.0%
!!! ATCATAAGCATTTTAAAAAC+AGG + Chr1:75983853-75983872 MsG0180004281.01.T01:CDS 20.0%
!!! TAAGAATCAATACTTTGAAA+GGG + Chr1:75981835-75981854 MsG0180004281.01.T01:CDS 20.0%
!!! TCAATTATTGTCTTTTGATA+AGG + Chr1:75982110-75982129 MsG0180004281.01.T01:CDS 20.0%
! AATACAAACACTTTCTACAT+TGG + Chr1:75984248-75984267 MsG0180004281.01.T01:CDS 25.0%
! AATAGGTACAATATTAACTG+TGG + Chr1:75981145-75981164 MsG0180004281.01.T01:CDS 25.0%
! ACAGTTAATATTGTACCTAT+TGG - Chr1:75981146-75981165 None:intergenic 25.0%
! AGCTGAAAATTCTATTAACA+AGG + Chr1:75982201-75982220 MsG0180004281.01.T01:CDS 25.0%
! ATTTAACTAGCAAGTAGAAA+CGG - Chr1:75981394-75981413 None:intergenic 25.0%
! GATTTAAACTTGATACAACT+TGG + Chr1:75983142-75983161 MsG0180004281.01.T01:CDS 25.0%
! TTGAGAAAATCAACAAGTAA+AGG - Chr1:75983979-75983998 None:intergenic 25.0%
!! AACATCAAATCTAGAATAAG+AGG - Chr1:75983304-75983323 None:intergenic 25.0%
!! AACTACAAAGTTGATTGAAA+TGG + Chr1:75983816-75983835 MsG0180004281.01.T01:CDS 25.0%
!! AATTTAACGACAAATTTTCC+CGG - Chr1:75982141-75982160 None:intergenic 25.0%
!! ACTACAAAGTTGATTGAAAT+GGG + Chr1:75983817-75983836 MsG0180004281.01.T01:CDS 25.0%
!!! CATTTTAAAAACAGGCAAAA+TGG + Chr1:75983861-75983880 MsG0180004281.01.T01:CDS 25.0%
!!! TTTATTGGAGATTTTGACTT+GGG + Chr1:75984332-75984351 MsG0180004281.01.T01:CDS 25.0%
AAACTTGATACAACTTGGAA+AGG + Chr1:75983147-75983166 MsG0180004281.01.T01:CDS 30.0%
AAAGGAAAGAATTAAGAGGT+TGG - Chr1:75981901-75981920 None:intergenic 30.0%
AAATGCAATGAGACCTTTAT+TGG + Chr1:75984317-75984336 MsG0180004281.01.T01:CDS 30.0%
AACACTTTCTACATTGGTAT+TGG + Chr1:75984254-75984273 MsG0180004281.01.T01:CDS 30.0%
AAGAATTAGAGATACACCAT+TGG - Chr1:75983581-75983600 None:intergenic 30.0%
ATATAATCTACTATGACCCT+AGG - Chr1:75983039-75983058 None:intergenic 30.0%
ATCCAACACCAAATTAACTA+TGG - Chr1:75983122-75983141 None:intergenic 30.0%
CAAGTCAAAATCTCCAATAA+AGG - Chr1:75984333-75984352 None:intergenic 30.0%
TATTGGAAAAGAGAGTTTCA+AGG + Chr1:75981214-75981233 MsG0180004281.01.T01:CDS 30.0%
TCATGAATACTAAATCTCAG+TGG - Chr1:75982384-75982403 None:intergenic 30.0%
TCTTGAAGCAGATGTTAAAA+GGG + Chr1:75981334-75981353 MsG0180004281.01.T01:CDS 30.0%
TGTTAAAAGGGCGAATAATA+TGG + Chr1:75981346-75981365 MsG0180004281.01.T01:CDS 30.0%
TTCCAATAGACAAAATGTTG+TGG - Chr1:75984163-75984182 None:intergenic 30.0%
! ACTTTGAAAGATGTTGTAGA+GGG + Chr1:75982313-75982332 MsG0180004281.01.T01:CDS 30.0%
! ATTTCTTTGTTGATGGAGAA+GGG + Chr1:75983404-75983423 MsG0180004281.01.T01:CDS 30.0%
! CGACAATGATAATGTACAAA+TGG + Chr1:75983747-75983766 MsG0180004281.01.T01:CDS 30.0%
! GGAATTGATTTCTTTGTTGA+TGG + Chr1:75983397-75983416 MsG0180004281.01.T01:CDS 30.0%
!! AAAAGCCGAATTTGTTTTCT+TGG + Chr1:75981757-75981776 MsG0180004281.01.T01:CDS 30.0%
!! AGTTGTTTTCATAAGCTATC+CGG - Chr1:75982937-75982956 None:intergenic 30.0%
!! CTTATTTCTATAAGCTCATC+CGG + Chr1:75982915-75982934 MsG0180004281.01.T01:intron 30.0%
!!! ATTGAAGGTTGGTTTTATGA+TGG + Chr1:75981992-75982011 MsG0180004281.01.T01:CDS 30.0%
!!! CTTGTTGATTTTCTCAATAC+AGG + Chr1:75983982-75984001 MsG0180004281.01.T01:CDS 30.0%
!!! CTTTATTGGAGATTTTGACT+TGG + Chr1:75984331-75984350 MsG0180004281.01.T01:CDS 30.0%
!!! TTATTGGAGATTTTGACTTG+GGG + Chr1:75984333-75984352 MsG0180004281.01.T01:CDS 30.0%
AAAAAGAAGAAGCTGCGAAT+AGG + Chr1:75981729-75981748 MsG0180004281.01.T01:CDS 35.0%
AAACTTTCTTCTTCTGACGA+TGG + Chr1:75983376-75983395 MsG0180004281.01.T01:CDS 35.0%
AACAAGGATTGGATCTCTAT+TGG + Chr1:75982217-75982236 MsG0180004281.01.T01:CDS 35.0%
AAGCAACTCTAACATTTCCA+AGG + Chr1:75982542-75982561 MsG0180004281.01.T01:CDS 35.0%
ACAAGGATTGGATCTCTATT+GGG + Chr1:75982218-75982237 MsG0180004281.01.T01:CDS 35.0%
ACCGGATTCAAGAATATCAA+TGG + Chr1:75983090-75983109 MsG0180004281.01.T01:CDS 35.0%
AGAAAGTTTCTCGAGGATTT+CGG - Chr1:75983365-75983384 None:intergenic 35.0%
CACTTATATGTCAAGTCCTA+GGG + Chr1:75983020-75983039 MsG0180004281.01.T01:intron 35.0%
CATTGCTTGAACGTTATTCT+AGG + Chr1:75984523-75984542 MsG0180004281.01.T01:CDS 35.0%
CCAGACATCATTTCTATCAA+AGG - Chr1:75983187-75983206 None:intergenic 35.0%
CCTTTGATAGAAATGATGTC+TGG + Chr1:75983184-75983203 MsG0180004281.01.T01:CDS 35.0%
CTCTTGAAGCAGATGTTAAA+AGG + Chr1:75981333-75981352 MsG0180004281.01.T01:CDS 35.0%
CTGCTCCAAGAAAACAAATT+CGG - Chr1:75981765-75981784 None:intergenic 35.0%
CTGTTGCAAAACTAGCAATT+TGG - Chr1:75983458-75983477 None:intergenic 35.0%
GATAGAGAGATACGATTCAA+AGG + Chr1:75981865-75981884 MsG0180004281.01.T01:CDS 35.0%
GCCATTGATATTCTTGAATC+CGG - Chr1:75983094-75983113 None:intergenic 35.0%
GGATCATATTATTTCGTGCT+TGG + Chr1:75982518-75982537 MsG0180004281.01.T01:CDS 35.0%
GGCAAAAGCCATAGTTAATT+TGG + Chr1:75983111-75983130 MsG0180004281.01.T01:CDS 35.0%
GGCAGTAATATTTATGGAGA+CGG + Chr1:75984468-75984487 MsG0180004281.01.T01:CDS 35.0%
GGTTTGATAAAGCTGTTACA+TGG + Chr1:75984198-75984217 MsG0180004281.01.T01:CDS 35.0%
GTCTCCATAAATATTACTGC+CGG - Chr1:75984469-75984488 None:intergenic 35.0%
TAACAAATCAATTGCTGCCT+TGG - Chr1:75982562-75982581 None:intergenic 35.0%
TAGATTTGATGTTCTCTCCT+CGG + Chr1:75983311-75983330 MsG0180004281.01.T01:CDS 35.0%
TCACTTATATGTCAAGTCCT+AGG + Chr1:75983019-75983038 MsG0180004281.01.T01:intron 35.0%
TTGACCGGCAGTAATATTTA+TGG + Chr1:75984462-75984481 MsG0180004281.01.T01:CDS 35.0%
TTGATACAACTTGGAAAGGA+AGG + Chr1:75983151-75983170 MsG0180004281.01.T01:CDS 35.0%
TTGGAAATAACTGTGAGCTT+TGG - Chr1:75984066-75984085 None:intergenic 35.0%
! AAGGAAATGGTGGAATACTA+TGG + Chr1:75984411-75984430 MsG0180004281.01.T01:CDS 35.0%
! ACAAAGTTGATTGAAATGGG+AGG + Chr1:75983820-75983839 MsG0180004281.01.T01:CDS 35.0%
! ACAGTTATTTCCAAACCAAG+CGG + Chr1:75984072-75984091 MsG0180004281.01.T01:CDS 35.0%
! ATTGTTGACAAGTTGAACCA+AGG + Chr1:75981584-75981603 MsG0180004281.01.T01:CDS 35.0%
! CACTTTGAAAGATGTTGTAG+AGG + Chr1:75982312-75982331 MsG0180004281.01.T01:CDS 35.0%
! CTTTGAAAGATGTTGTAGAG+GGG + Chr1:75982314-75982333 MsG0180004281.01.T01:CDS 35.0%
! CTTTGTAGTTAGTTCTCGTT+CGG - Chr1:75983806-75983825 None:intergenic 35.0%
! GAACTGGCTCAATATCAAAT+AGG - Chr1:75981253-75981272 None:intergenic 35.0%
! GACCACAACATTTTGTCTAT+TGG + Chr1:75984158-75984177 MsG0180004281.01.T01:CDS 35.0%
! GATTTCTTTGTTGATGGAGA+AGG + Chr1:75983403-75983422 MsG0180004281.01.T01:CDS 35.0%
! GGTTTTTGTGTCAAAGGAAA+TGG + Chr1:75984398-75984417 MsG0180004281.01.T01:CDS 35.0%
! GTCTTTTGATAAGGTCTATC+CGG + Chr1:75982119-75982138 MsG0180004281.01.T01:CDS 35.0%
! TCAATACTTTGAAAGGGTTC+AGG + Chr1:75981841-75981860 MsG0180004281.01.T01:CDS 35.0%
! TCTACTTGCTAGTTAAATGC+CGG + Chr1:75981396-75981415 MsG0180004281.01.T01:CDS 35.0%
! TCTTTTGATAAGGTCTATCC+GGG + Chr1:75982120-75982139 MsG0180004281.01.T01:CDS 35.0%
! TGATATTGAGCCAGTTCTAA+AGG + Chr1:75981256-75981275 MsG0180004281.01.T01:CDS 35.0%
! TGTAACAGCTTTATCAAACC+AGG - Chr1:75984198-75984217 None:intergenic 35.0%
! TTCTTGAAGATACTAGCTTG+AGG + Chr1:75982044-75982063 MsG0180004281.01.T01:CDS 35.0%
! TTCTTTTTCCTTCCTAATGC+TGG - Chr1:75981717-75981736 None:intergenic 35.0%
! TTTTGTGTCAAAGGAAATGG+TGG + Chr1:75984401-75984420 MsG0180004281.01.T01:CDS 35.0%
!! AACTAGCAATTTGGTGATGA+TGG - Chr1:75983449-75983468 None:intergenic 35.0%
!! AATACCTTTTCAAGCCTAGA+AGG + Chr1:75983692-75983711 MsG0180004281.01.T01:CDS 35.0%
!! AGCCATAGTTAATTTGGTGT+TGG + Chr1:75983117-75983136 MsG0180004281.01.T01:CDS 35.0%
!! AGCTGTAATTCCTTTAGAAC+TGG - Chr1:75981269-75981288 None:intergenic 35.0%
AAAGCAATTCTTGCAGCCAA+TGG + Chr1:75983562-75983581 MsG0180004281.01.T01:CDS 40.0%
AACTGATCCAGAAACACAAG+AGG + Chr1:75982021-75982040 MsG0180004281.01.T01:CDS 40.0%
AAGGGAATTATTGCTTCCTC+CGG + Chr1:75983271-75983290 MsG0180004281.01.T01:CDS 40.0%
AAGTTACAAGGGATATCGGA+AGG + Chr1:75981441-75981460 MsG0180004281.01.T01:CDS 40.0%
AATTGGCTGAATCACAAGGA+TGG + Chr1:75982496-75982515 MsG0180004281.01.T01:CDS 40.0%
ACATACTTGAGGAGATTGCA+AGG + Chr1:75981645-75981664 MsG0180004281.01.T01:CDS 40.0%
ACTACAAGGTGAGATGCAAA+GGG + Chr1:75981529-75981548 MsG0180004281.01.T01:CDS 40.0%
AGACCTTTCTTTATCAGCCT+TGG + Chr1:75983222-75983241 MsG0180004281.01.T01:CDS 40.0%
AGAGATCAGCTATTGAAGGT+TGG + Chr1:75981981-75982000 MsG0180004281.01.T01:CDS 40.0%
AGGAAGTTGAGCAAGTTACA+AGG + Chr1:75981429-75981448 MsG0180004281.01.T01:CDS 40.0%
AGGACTAAGAGATCAGAAAC+AGG + Chr1:75981604-75981623 MsG0180004281.01.T01:CDS 40.0%
AGGTATTCAACTACTCCTTC+TGG - Chr1:75983679-75983698 None:intergenic 40.0%
ATACCGTTATCTCGATCCTT+GGG + Chr1:75982251-75982270 MsG0180004281.01.T01:CDS 40.0%
ATATGTCAAACCTGCAATCG+CGG + Chr1:75982428-75982447 MsG0180004281.01.T01:intron 40.0%
ATCCGAGATAGGAAAAGAGT+TGG + Chr1:75981691-75981710 MsG0180004281.01.T01:CDS 40.0%
ATTGGCTGAATCACAAGGAT+GGG + Chr1:75982497-75982516 MsG0180004281.01.T01:CDS 40.0%
ATTGTCACTGCTGCTAATTG+TGG + Chr1:75982753-75982772 MsG0180004281.01.T01:CDS 40.0%
CAAGGATTGGATCTCTATTG+GGG + Chr1:75982219-75982238 MsG0180004281.01.T01:CDS 40.0%
CAGAAGAAGAAAGTTTCTCG+AGG - Chr1:75983372-75983391 None:intergenic 40.0%
CATACTTGAGGAGATTGCAA+GGG + Chr1:75981646-75981665 MsG0180004281.01.T01:CDS 40.0%
CATCTTCACTTCTCTGTCAT+TGG - Chr1:75982281-75982300 None:intergenic 40.0%
CGGCAAAGGAAAGAATTAAG+AGG - Chr1:75981905-75981924 None:intergenic 40.0%
CTATCATGAGCTGCACATAA+AGG - Chr1:75984126-75984145 None:intergenic 40.0%
GACCTTTCTTTATCAGCCTT+GGG + Chr1:75983223-75983242 MsG0180004281.01.T01:CDS 40.0%
GAGAAATTGGCTGAATCACA+AGG + Chr1:75982492-75982511 MsG0180004281.01.T01:CDS 40.0%
GAGCAAGTTACAAGGGATAT+CGG + Chr1:75981437-75981456 MsG0180004281.01.T01:CDS 40.0%
GAGTCAGAATCATCAAGAAG+TGG - Chr1:75983604-75983623 None:intergenic 40.0%
GAGTTGCTTCAAGAAAGATC+TGG + Chr1:75982585-75982604 MsG0180004281.01.T01:CDS 40.0%
GATAAAGCTGTTACATGGTG+AGG + Chr1:75984203-75984222 MsG0180004281.01.T01:CDS 40.0%
GCTATCGAGAATTTCTGATC+AGG + Chr1:75981499-75981518 MsG0180004281.01.T01:CDS 40.0%
GGAAGTTGAGCAAGTTACAA+GGG + Chr1:75981430-75981449 MsG0180004281.01.T01:CDS 40.0%
GGATTGGAACTCATACCAAT+AGG + Chr1:75981128-75981147 MsG0180004281.01.T01:CDS 40.0%
GTTTCTGATCTCTTAGTCCT+TGG - Chr1:75981604-75981623 None:intergenic 40.0%
TAACCTTGTAACCCTTGTGA+AGG + Chr1:75982659-75982678 MsG0180004281.01.T01:CDS 40.0%
TAAGACAATCGATCGAAGAG+TGG + Chr1:75982080-75982099 MsG0180004281.01.T01:CDS 40.0%
TACAGGTTCAATCACTGCAA+AGG + Chr1:75983999-75984018 MsG0180004281.01.T01:CDS 40.0%
TACCCAAGGCTGATAAAGAA+AGG - Chr1:75983228-75983247 None:intergenic 40.0%
TAGAATAAGAGGAACACCTC+CGG - Chr1:75983293-75983312 None:intergenic 40.0%
TCAAGAACCTCTTGTGTTTC+TGG - Chr1:75982031-75982050 None:intergenic 40.0%
TCACTTAAGGCAGAAGCTTT+AGG + Chr1:75984363-75984382 MsG0180004281.01.T01:CDS 40.0%
TCTTCATCATCTGCAATCTC+TGG + Chr1:75984546-75984565 MsG0180004281.01.T01:CDS 40.0%
TCTTCGATCGATTGTCTTAG+TGG - Chr1:75982079-75982098 None:intergenic 40.0%
TCTTTCCTTTGCCGCATAAA+CGG + Chr1:75981911-75981930 MsG0180004281.01.T01:CDS 40.0%
TGCTTCAAGAAAGATCTGGT+TGG + Chr1:75982589-75982608 MsG0180004281.01.T01:CDS 40.0%
TGTGAGAGATCAGCTATTGA+AGG + Chr1:75981977-75981996 MsG0180004281.01.T01:CDS 40.0%
TTGCAACAGAATTCCAACTC+AGG + Chr1:75983469-75983488 MsG0180004281.01.T01:CDS 40.0%
TTGGAAGCAAATGCTTTACC+TGG + Chr1:75984177-75984196 MsG0180004281.01.T01:CDS 40.0%
TTTCGCGAATGACATACTTG+AGG + Chr1:75981634-75981653 MsG0180004281.01.T01:CDS 40.0%
! AACTCTTTTCCTATCTCGGA+TGG - Chr1:75981692-75981711 None:intergenic 40.0%
! AGAAGGCTAGAAGCTTTGAT+TGG + Chr1:75983709-75983728 MsG0180004281.01.T01:CDS 40.0%
! ATCAAAGCTTCTAGCCTTCT+AGG - Chr1:75983709-75983728 None:intergenic 40.0%
! GGAGAAGGTTTTTGTGTCAA+AGG + Chr1:75984392-75984411 MsG0180004281.01.T01:CDS 40.0%
! GGTGGCGAAGAAAATTTTGA+TGG + Chr1:75982704-75982723 MsG0180004281.01.T01:CDS 40.0%
!! GATCAGGTTGATAGACTACA+AGG + Chr1:75981515-75981534 MsG0180004281.01.T01:CDS 40.0%
!! GTTAGTTCTCGTTCGGATTT+TGG - Chr1:75983799-75983818 None:intergenic 40.0%
!! TCGCGTTTGATTTGTTTGAC+CGG + Chr1:75984447-75984466 MsG0180004281.01.T01:CDS 40.0%
!!! AGCTTTAGGACTTTTGGAGA+AGG + Chr1:75984377-75984396 MsG0180004281.01.T01:CDS 40.0%
!!! ATCTGCAATCTCTGGAGTTT+TGG + Chr1:75984554-75984573 MsG0180004281.01.T01:CDS 40.0%
AAGAGATCAGAAACAGGACC+AGG + Chr1:75981610-75981629 MsG0180004281.01.T01:CDS 45.0%
AATGTACAAATGGCTGCAGC+TGG + Chr1:75983757-75983776 MsG0180004281.01.T01:CDS 45.0%
AGCTGGATCTCATGCTAACA+AGG + Chr1:75983252-75983271 MsG0180004281.01.T01:CDS 45.0%
ATCCTGCTTCTTCTCTTCTC+AGG + Chr1:75983067-75983086 MsG0180004281.01.T01:intron 45.0%
CACATGTAGTTCCTGTGGAA+AGG - Chr1:75981961-75981980 None:intergenic 45.0%
CAGCTATTAGAGCCTGCATT+TGG - Chr1:75982186-75982205 None:intergenic 45.0%
CATGAGCAGTTCTCAAGACT+TGG - Chr1:75981178-75981197 None:intergenic 45.0%
CCATAACAGCTCCGTTTATG+CGG - Chr1:75981925-75981944 None:intergenic 45.0%
CCTTAGAAGGAAAGCTGCTA+AGG + Chr1:75984494-75984513 MsG0180004281.01.T01:CDS 45.0%
CCTTAGCAGCTTTCCTTCTA+AGG - Chr1:75984497-75984516 None:intergenic 45.0%
CGCTGTGACTCGATATTTGT+AGG - Chr1:75983931-75983950 None:intergenic 45.0%
CTTCCCAAGGATCGAGATAA+CGG - Chr1:75982257-75982276 None:intergenic 45.0%
GAAAAGAGTTGGCCAGCATT+AGG + Chr1:75981702-75981721 MsG0180004281.01.T01:CDS 45.0%
GACTACAAGGTGAGATGCAA+AGG + Chr1:75981528-75981547 MsG0180004281.01.T01:CDS 45.0%
GATACCGTTATCTCGATCCT+TGG + Chr1:75982250-75982269 MsG0180004281.01.T01:CDS 45.0%
GCAATTGCAGCAGCTTTCAT+CGG + Chr1:75984021-75984040 MsG0180004281.01.T01:CDS 45.0%
GCAGCAGCTGATGTTCTTAT+TGG + Chr1:75981197-75981216 MsG0180004281.01.T01:CDS 45.0%
GCAGGTTTATAGCAGTCTCT+CGG - Chr1:75983633-75983652 None:intergenic 45.0%
GCTGAGAGAAAAGAAAGAGC+AGG - Chr1:75983651-75983670 None:intergenic 45.0%
GCTGGATCTCATGCTAACAA+GGG + Chr1:75983253-75983272 MsG0180004281.01.T01:CDS 45.0%
GGTGGAATACTATGGAACGA+CGG + Chr1:75984419-75984438 MsG0180004281.01.T01:CDS 45.0%
GTAATGAATGACCTTGTCCG+AGG - Chr1:75983331-75983350 None:intergenic 45.0%
TATCATTGTCGTCGTTCTCG+AGG - Chr1:75983738-75983757 None:intergenic 45.0%
TATGTCAAACCTGCAATCGC+GGG + Chr1:75982429-75982448 MsG0180004281.01.T01:intron 45.0%
TCGCATGATTCGAGGTAAGA+AGG + Chr1:75982797-75982816 MsG0180004281.01.T01:intron 45.0%
TCTCTCACATGTAGTTCCTG+TGG - Chr1:75981966-75981985 None:intergenic 45.0%
TTCTCTCAGCATGAACCAGA+AGG + Chr1:75983661-75983680 MsG0180004281.01.T01:CDS 45.0%
TTGAAAAACCAGCAACCGCT+TGG - Chr1:75984090-75984109 None:intergenic 45.0%
TTGCTCAACTTCCTCGACAA+TGG - Chr1:75981423-75981442 None:intergenic 45.0%
TTGGGGTAGTGAGTCACTTA+AGG + Chr1:75984350-75984369 MsG0180004281.01.T01:CDS 45.0%
! AGATCCAGCTAGTTTACCCA+AGG - Chr1:75983242-75983261 None:intergenic 45.0%
! CTAGCCTTCTAGGCTTGAAA+AGG - Chr1:75983699-75983718 None:intergenic 45.0%
! GGCCAACTCTTTTCCTATCT+CGG - Chr1:75981696-75981715 None:intergenic 45.0%
! GTTGAGAAGTACAAGAACCG+TGG + Chr1:75981368-75981387 MsG0180004281.01.T01:CDS 45.0%
! TTGCAAGTTCGAGACTGGTT+TGG + Chr1:75983534-75983553 MsG0180004281.01.T01:CDS 45.0%
!! GTTCTCGTTCGGATTTTGGT+AGG - Chr1:75983795-75983814 None:intergenic 45.0%
!!! GGCAGAAGCTTTAGGACTTT+TGG + Chr1:75984371-75984390 MsG0180004281.01.T01:CDS 45.0%
AAACCAGCAACCGCTTGGTT+TGG - Chr1:75984085-75984104 None:intergenic 50.0%
AAATTAGTCCCCGCGATTGC+AGG - Chr1:75982441-75982460 None:intergenic 50.0%
AAGGGATATCGGAAGGTCTC+TGG + Chr1:75981448-75981467 MsG0180004281.01.T01:CDS 50.0%
AATAAGAGGAACACCTCCGG+AGG - Chr1:75983290-75983309 None:intergenic 50.0%
ACCTCTGCTGAATCGTTTCC+AGG - Chr1:75982687-75982706 None:intergenic 50.0%
ACGAAGGTTGTGACCTGAGT+TGG - Chr1:75983485-75983504 None:intergenic 50.0%
AGAATCCCTGAGCCAAATGC+AGG + Chr1:75982171-75982190 MsG0180004281.01.T01:CDS 50.0%
AGAGTTGGCCAGCATTAGGA+AGG + Chr1:75981706-75981725 MsG0180004281.01.T01:CDS 50.0%
ATGGAGACGGACACCTTAGA+AGG + Chr1:75984481-75984500 MsG0180004281.01.T01:CDS 50.0%
ATGTCAAACCTGCAATCGCG+GGG + Chr1:75982430-75982449 MsG0180004281.01.T01:intron 50.0%
CAACTTCCTCGACAATGGAC+CGG - Chr1:75981418-75981437 None:intergenic 50.0%
CCGCATAAACGGAGCTGTTA+TGG + Chr1:75981922-75981941 MsG0180004281.01.T01:CDS 50.0%
CCTCTGCTGAATCGTTTCCA+GGG - Chr1:75982686-75982705 None:intergenic 50.0%
CGAATCATGCGATCAGCTAG+TGG - Chr1:75982789-75982808 None:intergenic 50.0%
CTAGCAAGTAGAAACGGCCA+CGG - Chr1:75981388-75981407 None:intergenic 50.0%
CTAGCTGATCGCATGATTCG+AGG + Chr1:75982789-75982808 MsG0180004281.01.T01:CDS 50.0%
CTCTGTCATTGGACTTCCCA+AGG - Chr1:75982270-75982289 None:intergenic 50.0%
GATGCAAAGGGTTGAGTTCG+AGG + Chr1:75981541-75981560 MsG0180004281.01.T01:CDS 50.0%
GCTTCTTCTCTTCTCAGGAC+CGG + Chr1:75983072-75983091 MsG0180004281.01.T01:intron 50.0%
GGAATTATTGCTTCCTCCGG+AGG + Chr1:75983274-75983293 MsG0180004281.01.T01:CDS 50.0%
GGATTGGATCTCTATTGGGG+AGG + Chr1:75982222-75982241 MsG0180004281.01.T01:CDS 50.0%
GGCATTTGCAAGTTCGAGAC+TGG + Chr1:75983529-75983548 MsG0180004281.01.T01:CDS 50.0%
GGTCCTTCACAAGGGTTACA+AGG - Chr1:75982665-75982684 None:intergenic 50.0%
GTATGTCATTCGCGAAAGCC+TGG - Chr1:75981631-75981650 None:intergenic 50.0%
GTCCTGAGAAGAGAAGAAGC+AGG - Chr1:75983072-75983091 None:intergenic 50.0%
GTTCCTGTGGAAAGGCTAAC+AGG - Chr1:75981953-75981972 None:intergenic 50.0%
GTTTCCAGGGTCCTTCACAA+GGG - Chr1:75982673-75982692 None:intergenic 50.0%
TAAATGCCGGTCCATTGTCG+AGG + Chr1:75981409-75981428 MsG0180004281.01.T01:CDS 50.0%
TATCGAGTCACAGCGCGATT+TGG + Chr1:75983936-75983955 MsG0180004281.01.T01:CDS 50.0%
TCACTGCTGCTAATTGTGGC+TGG + Chr1:75982757-75982776 MsG0180004281.01.T01:CDS 50.0%
TCAGCCTTGGGTAAACTAGC+TGG + Chr1:75983235-75983254 MsG0180004281.01.T01:CDS 50.0%
TGATGTTCTCTCCTCGGACA+AGG + Chr1:75983317-75983336 MsG0180004281.01.T01:CDS 50.0%
TGGAAACGATTCAGCAGAGG+TGG + Chr1:75982686-75982705 MsG0180004281.01.T01:CDS 50.0%
TTTCCAAACCAAGCGGTTGC+TGG + Chr1:75984079-75984098 MsG0180004281.01.T01:CDS 50.0%
! AGAGGGGCATGCAAGAAACA+AGG + Chr1:75982330-75982349 MsG0180004281.01.T01:CDS 50.0%
! TAGAGCCTGCATTTGGCTCA+GGG - Chr1:75982179-75982198 None:intergenic 50.0%
! TTAGAGCCTGCATTTGGCTC+AGG - Chr1:75982180-75982199 None:intergenic 50.0%
!! ATTGGAAGAGCATCCGCAGA+GGG + Chr1:75984272-75984291 MsG0180004281.01.T01:CDS 50.0%
!! CAGCGCGATTTGGTTAAACG+CGG + Chr1:75983946-75983965 MsG0180004281.01.T01:CDS 50.0%
!! CTCTAGAGCTGATGCAGCAA+GGG + Chr1:75981799-75981818 MsG0180004281.01.T01:CDS 50.0%
!! GACTCTAGAGCAACTCTAGC+AGG - Chr1:75981314-75981333 None:intergenic 50.0%
!! GATCCTGTTAGCCTTTCCAC+AGG + Chr1:75981947-75981966 MsG0180004281.01.T01:CDS 50.0%
!! TATTGGAAGAGCATCCGCAG+AGG + Chr1:75984271-75984290 MsG0180004281.01.T01:CDS 50.0%
!! TCTCTAGAGCTGATGCAGCA+AGG + Chr1:75981798-75981817 MsG0180004281.01.T01:CDS 50.0%
AACAAACGAGCACCCCTCTG+CGG - Chr1:75984288-75984307 None:intergenic 55.0%
ACGCTCTCAGTGCACTCTTC+AGG + Chr1:75983896-75983915 MsG0180004281.01.T01:CDS 55.0%
CAGCTCCGTTTATGCGGCAA+AGG - Chr1:75981919-75981938 None:intergenic 55.0%
CCAACGCTACGTGCTCTTCT+TGG + Chr1:75983508-75983527 MsG0180004281.01.T01:CDS 55.0%
CCCTGGAAACGATTCAGCAG+AGG + Chr1:75982683-75982702 MsG0180004281.01.T01:CDS 55.0%
CCTATCTCGGATGGTTCCAC+CGG - Chr1:75981683-75981702 None:intergenic 55.0%
CGTTTCCAGGGTCCTTCACA+AGG - Chr1:75982674-75982693 None:intergenic 55.0%
GAGGAGATTGCAAGGGCAGT+TGG + Chr1:75981653-75981672 MsG0180004281.01.T01:CDS 55.0%
GTAACCCTTGTGAAGGACCC+TGG + Chr1:75982666-75982685 MsG0180004281.01.T01:CDS 55.0%
! CCAAGAAGAGCACGTAGCGT+TGG - Chr1:75983511-75983530 None:intergenic 55.0%
!! CACGTAGCGTTGGCTTACGA+AGG - Chr1:75983501-75983520 None:intergenic 55.0%
!! TTGGAAGAGCATCCGCAGAG+GGG + Chr1:75984273-75984292 MsG0180004281.01.T01:CDS 55.0%
CCGGTGGAACCATCCGAGAT+AGG + Chr1:75981680-75981699 MsG0180004281.01.T01:CDS 60.0%
TGCAAGGGCAGTTGGCGTGC+CGG + Chr1:75981661-75981680 MsG0180004281.01.T01:CDS 65.0%
AAGGGCAGTTGGCGTGCCGG+TGG + Chr1:75981664-75981683 MsG0180004281.01.T01:CDS 70.0%
Chromosome Type Strat End Strand Name
Chr1 gene 75981122 75984581 75981122 ID=MsG0180004281.01;Name=MsG0180004281.01
Chr1 mRNA 75981122 75984581 75981122 ID=MsG0180004281.01.T01;Parent=MsG0180004281.01;Name=MsG0180004281.01.T01;_AED=0.17;_eAED=0.17;_QI=0|0|0|1|1|1|3|0|1013
Chr1 exon 75981122 75982351 75981122 ID=MsG0180004281.01.T01:exon:44676;Parent=MsG0180004281.01.T01
Chr1 exon 75982492 75982810 75982492 ID=MsG0180004281.01.T01:exon:44677;Parent=MsG0180004281.01.T01
Chr1 exon 75983089 75984581 75983089 ID=MsG0180004281.01.T01:exon:44678;Parent=MsG0180004281.01.T01
Chr1 CDS 75981122 75982351 75981122 ID=MsG0180004281.01.T01:cds;Parent=MsG0180004281.01.T01
Chr1 CDS 75982492 75982810 75982492 ID=MsG0180004281.01.T01:cds;Parent=MsG0180004281.01.T01
Chr1 CDS 75983089 75984581 75983089 ID=MsG0180004281.01.T01:cds;Parent=MsG0180004281.01.T01
Gene Sequence

>MsG0180004281.01.T01

ATGGTAGGATTGGAACTCATACCAATAGGTACAATATTAACTGTGGTAACAAGCCAAGTCTTGAGAACTGCTCATGCAGCAGCTGATGTTCTTATTGGAAAAGAGAGTTTCAAGGCACTTTCGAAATACCTATTTGATATTGAGCCAGTTCTAAAGGAATTACAGCTTCAAGAATTGAATGATTCTCAACCTGCTAGAGTTGCTCTAGAGTCTCTTGAAGCAGATGTTAAAAGGGCGAATAATATGGTTGAGAAGTACAAGAACCGTGGCCGTTTCTACTTGCTAGTTAAATGCCGGTCCATTGTCGAGGAAGTTGAGCAAGTTACAAGGGATATCGGAAGGTCTCTGGCTGCACTGTCTATTGCAAATACTGAAGTGCTATCGAGAATTTCTGATCAGGTTGATAGACTACAAGGTGAGATGCAAAGGGTTGAGTTCGAGGCTTCACAGTCTCAGCTTGAAATTGTTGACAAGTTGAACCAAGGACTAAGAGATCAGAAACAGGACCAGGCTTTCGCGAATGACATACTTGAGGAGATTGCAAGGGCAGTTGGCGTGCCGGTGGAACCATCCGAGATAGGAAAAGAGTTGGCCAGCATTAGGAAGGAAAAAGAAGAAGCTGCGAATAGGAAAGAAAAAGCCGAATTTGTTTTCTTGGAGCAGATCATTAAGTTACTCTCTAGAGCTGATGCAGCAAGGGATTATGAAGAAGTTAAGAATCAATACTTTGAAAGGGTTCAGGTGATAGAGAGATACGATTCAAAGGAAAAATATATCCAACCTCTTAATTCTTTCCTTTGCCGCATAAACGGAGCTGTTATGGTTGATCCTGTTAGCCTTTCCACAGGAACTACATGTGAGAGATCAGCTATTGAAGGTTGGTTTTATGATGGAAACAGAACTGATCCAGAAACACAAGAGGTTCTTGAAGATACTAGCTTGAGGTCAAACATTCCACTAAGACAATCGATCGAAGAGTGGAGAGAACTCAATTATTGTCTTTTGATAAGGTCTATCCGGGAAAATTTGTCGTTAAATTCTGATCTGAAAGAATCCCTGAGCCAAATGCAGGCTCTAATAGCTGAAAATTCTATTAACAAGGATTGGATCTCTATTGGGGAGGTTACTGATACCGTTATCTCGATCCTTGGGAAGTCCAATGACAGAGAAGTGAAGATGAAGATTTTGATCACTTTGAAAGATGTTGTAGAGGGGCATGCAAGAAACAAGGAGAAATTGGCTGAATCACAAGGATGGGATCATATTATTTCGTGCTTGGAAAGCAACTCTAACATTTCCAAGGCAGCAATTGATTTGTTATATGAGTTGCTTCAAGAAAGATCTGGTTGGAATCAATGTTTTTGCAAAAAACTTTCTGAGAACGACACTGCAGTTCTTAACCTTGTAACCCTTGTGAAGGACCCTGGAAACGATTCAGCAGAGGTGGCGAAGAAAATTTTGATGGAGCTTTTTGAAATAAATGAAAGCAGCATTGTCACTGCTGCTAATTGTGGCTGGTATAAGCCACTAGCTGATCGCATGATTCGAGGACCGGATTCAAGAATATCAATGGCAAAAGCCATAGTTAATTTGGTGTTGGATGATTTAAACTTGATACAACTTGGAAAGGAAGGAGTTATAACTCCTTTGATAGAAATGATGTCTGGCAGTATCGAGTCGAAAGACCTTTCTTTATCAGCCTTGGGTAAACTAGCTGGATCTCATGCTAACAAGGGAATTATTGCTTCCTCCGGAGGTGTTCCTCTTATTCTAGATTTGATGTTCTCTCCTCGGACAAGGTCATTCATTACAATTAAATGCTCCGAAATCCTCGAGAAACTTTCTTCTTCTGACGATGGAATTGATTTCTTTGTTGATGGAGAAGGGAAACAACTTGAGTTAGATTCCATCATCACCAAATTGCTAGTTTTGCAACAGAATTCCAACTCAGGTCACAACCTTCGTAAGCCAACGCTACGTGCTCTTCTTGGCATTTGCAAGTTCGAGACTGGTTTGGTGAAGAAAGCAATTCTTGCAGCCAATGGTGTATCTCTAATTCTTCCACTTCTTGATGATTCTGACTCAGAAGTCCGAGAGACTGCTATAAACCTGCTCTTTCTTTTCTCTCAGCATGAACCAGAAGGAGTAGTTGAATACCTTTTCAAGCCTAGAAGGCTAGAAGCTTTGATTGGATTCCTCGAGAACGACGACAATGATAATGTACAAATGGCTGCAGCTGGCTTACTAGCTAACCTACCAAAATCCGAACGAGAACTAACTACAAAGTTGATTGAAATGGGAGGACTTGATGCAATCATAAGCATTTTAAAAACAGGCAAAATGGAAGCAAAAGAAAACGCTCTCAGTGCACTCTTCAGGTTCACAGATCCTACAAATATCGAGTCACAGCGCGATTTGGTTAAACGCGGAATATATCCTTTACTTGTTGATTTTCTCAATACAGGTTCAATCACTGCAAAGGCAATTGCAGCAGCTTTCATCGGCGATCTTTCTATGAGCACACCAAAGCTCACAGTTATTTCCAAACCAAGCGGTTGCTGGTTTTTCAAATCATCGCGCGTTCCTTTATGTGCAGCTCATGATAGCGTATGCAGTGTGACCACAACATTTTGTCTATTGGAAGCAAATGCTTTACCTGGTTTGATAAAGCTGTTACATGGTGAGGTTCATGCAACTGCTTATGAAGCAATACAAACACTTTCTACATTGGTATTGGAAGAGCATCCGCAGAGGGGTGCTCGTTTGTTGCATGAGAAAAATGCAATGAGACCTTTATTGGAGATTTTGACTTGGGGTAGTGAGTCACTTAAGGCAGAAGCTTTAGGACTTTTGGAGAAGGTTTTTGTGTCAAAGGAAATGGTGGAATACTATGGAACGACGGCTAGATCGCGTTTGATTTGTTTGACCGGCAGTAATATTTATGGAGACGGACACCTTAGAAGGAAAGCTGCTAAGGTATTGTCATTGCTTGAACGTTATTCTAGGTCTTCATCATCTGCAATCTCTGGAGTTTTGGAGTGA
Protein sequence

>MsG0180004281.01.T01

MVGLELIPIGTILTVVTSQVLRTAHAAADVLIGKESFKALSKYLFDIEPVLKELQLQELNDSQPARVALESLEADVKRANNMVEKYKNRGRFYLLVKCRSIVEEVEQVTRDIGRSLAALSIANTEVLSRISDQVDRLQGEMQRVEFEASQSQLEIVDKLNQGLRDQKQDQAFANDILEEIARAVGVPVEPSEIGKELASIRKEKEEAANRKEKAEFVFLEQIIKLLSRADAARDYEEVKNQYFERVQVIERYDSKEKYIQPLNSFLCRINGAVMVDPVSLSTGTTCERSAIEGWFYDGNRTDPETQEVLEDTSLRSNIPLRQSIEEWRELNYCLLIRSIRENLSLNSDLKESLSQMQALIAENSINKDWISIGEVTDTVISILGKSNDREVKMKILITLKDVVEGHARNKEKLAESQGWDHIISCLESNSNISKAAIDLLYELLQERSGWNQCFCKKLSENDTAVLNLVTLVKDPGNDSAEVAKKILMELFEINESSIVTAANCGWYKPLADRMIRGPDSRISMAKAIVNLVLDDLNLIQLGKEGVITPLIEMMSGSIESKDLSLSALGKLAGSHANKGIIASSGGVPLILDLMFSPRTRSFITIKCSEILEKLSSSDDGIDFFVDGEGKQLELDSIITKLLVLQQNSNSGHNLRKPTLRALLGICKFETGLVKKAILAANGVSLILPLLDDSDSEVRETAINLLFLFSQHEPEGVVEYLFKPRRLEALIGFLENDDNDNVQMAAAGLLANLPKSERELTTKLIEMGGLDAIISILKTGKMEAKENALSALFRFTDPTNIESQRDLVKRGIYPLLVDFLNTGSITAKAIAAAFIGDLSMSTPKLTVISKPSGCWFFKSSRVPLCAAHDSVCSVTTTFCLLEANALPGLIKLLHGEVHATAYEAIQTLSTLVLEEHPQRGARLLHEKNAMRPLLEILTWGSESLKAEALGLLEKVFVSKEMVEYYGTTARSRLICLTGSNIYGDGHLRRKAAKVLSLLERYSRSSSSAISGVLE*