Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0180004288.01.T01 | XP_013468766.1 | 95.325 | 385 | 17 | 1 | 1 | 385 | 1 | 384 | 0 | 744 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0180004288.01.T01 | A0A072VMZ8 | 95.325 | 385 | 17 | 1 | 1 | 385 | 1 | 384 | 0.0 | 744 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MsG0180004173.01 | MsG0180004288.01 | 0.869877 | 2.227655e-66 | 8.492715e-63 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0180004288.01.T01 | MTR_1g076500 | 95.325 | 385 | 17 | 1 | 1 | 385 | 1 | 384 | 0.0 | 744 |
| MsG0180004288.01.T01 | MTR_1g041155 | 57.143 | 385 | 127 | 11 | 1 | 382 | 1 | 350 | 8.22e-131 | 379 |
| MsG0180004288.01.T01 | MTR_1g070970 | 50.646 | 387 | 137 | 14 | 4 | 383 | 5 | 344 | 1.57e-102 | 307 |
| MsG0180004288.01.T01 | MTR_7g095960 | 49.482 | 386 | 147 | 15 | 4 | 382 | 5 | 349 | 6.61e-99 | 298 |
| MsG0180004288.01.T01 | MTR_7g083080 | 45.578 | 147 | 74 | 2 | 174 | 315 | 129 | 274 | 1.30e-36 | 135 |
| MsG0180004288.01.T01 | MTR_4g132963 | 42.975 | 121 | 69 | 0 | 176 | 296 | 115 | 235 | 1.62e-33 | 126 |
| MsG0180004288.01.T01 | MTR_4g132940 | 42.975 | 121 | 69 | 0 | 176 | 296 | 115 | 235 | 1.62e-33 | 126 |
| MsG0180004288.01.T01 | MTR_4g132970 | 42.063 | 126 | 73 | 0 | 171 | 296 | 131 | 256 | 2.05e-33 | 127 |
| MsG0180004288.01.T01 | MTR_8g093440 | 41.549 | 142 | 74 | 2 | 176 | 310 | 20 | 159 | 1.39e-32 | 122 |
| MsG0180004288.01.T01 | MTR_8g093440 | 39.024 | 164 | 85 | 4 | 160 | 310 | 60 | 221 | 3.03e-32 | 122 |
| MsG0180004288.01.T01 | MTR_2g025520 | 46.018 | 113 | 61 | 0 | 184 | 296 | 142 | 254 | 5.08e-31 | 120 |
| MsG0180004288.01.T01 | MTR_2g013780 | 39.716 | 141 | 77 | 4 | 173 | 307 | 140 | 278 | 5.53e-29 | 115 |
| MsG0180004288.01.T01 | MTR_4g078310 | 37.324 | 142 | 80 | 3 | 180 | 314 | 123 | 262 | 4.76e-28 | 112 |
| MsG0180004288.01.T01 | MTR_7g053310 | 31.064 | 235 | 130 | 7 | 79 | 303 | 41 | 253 | 4.88e-26 | 106 |
| MsG0180004288.01.T01 | MTR_4g088770 | 36.220 | 127 | 75 | 2 | 174 | 294 | 147 | 273 | 1.28e-25 | 105 |
| MsG0180004288.01.T01 | MTR_4g088760 | 37.190 | 121 | 70 | 2 | 180 | 294 | 206 | 326 | 1.88e-25 | 106 |
| MsG0180004288.01.T01 | MTR_8g012240 | 28.205 | 234 | 146 | 5 | 77 | 303 | 47 | 265 | 1.53e-24 | 102 |
| MsG0180004288.01.T01 | MTR_5g008720 | 35.252 | 139 | 79 | 2 | 176 | 308 | 97 | 230 | 2.78e-24 | 100 |
| MsG0180004288.01.T01 | MTR_2g013880 | 30.719 | 153 | 99 | 3 | 173 | 319 | 140 | 291 | 5.89e-23 | 98.6 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0180004288.01.T01 | AT3G22970 | 60.831 | 337 | 117 | 8 | 4 | 337 | 5 | 329 | 1.28e-118 | 349 |
| MsG0180004288.01.T01 | AT4G14620 | 51.804 | 388 | 125 | 14 | 4 | 383 | 2 | 335 | 4.52e-106 | 316 |
| MsG0180004288.01.T01 | AT2G38820 | 50.667 | 300 | 116 | 11 | 4 | 296 | 5 | 279 | 3.86e-87 | 266 |
| MsG0180004288.01.T01 | AT3G22970 | 62.437 | 197 | 73 | 1 | 141 | 337 | 23 | 218 | 4.29e-74 | 231 |
| MsG0180004288.01.T01 | AT3G54550 | 42.568 | 296 | 131 | 9 | 5 | 295 | 6 | 267 | 5.13e-63 | 204 |
| MsG0180004288.01.T01 | AT2G38820 | 44.550 | 211 | 85 | 11 | 4 | 207 | 5 | 190 | 5.78e-36 | 131 |
| MsG0180004288.01.T01 | AT2G39650 | 41.045 | 134 | 73 | 1 | 176 | 303 | 48 | 181 | 9.47e-32 | 120 |
| MsG0180004288.01.T01 | AT2G39650 | 41.045 | 134 | 73 | 1 | 176 | 303 | 110 | 243 | 1.91e-31 | 121 |
| MsG0180004288.01.T01 | AT3G07350 | 40.580 | 138 | 75 | 2 | 177 | 308 | 137 | 273 | 2.38e-31 | 121 |
| MsG0180004288.01.T01 | AT4G32480 | 39.355 | 155 | 82 | 4 | 176 | 324 | 116 | 264 | 1.43e-30 | 119 |
| MsG0180004288.01.T01 | AT1G77160 | 33.149 | 181 | 100 | 3 | 141 | 300 | 42 | 222 | 1.55e-30 | 118 |
| MsG0180004288.01.T01 | AT1G77145 | 39.189 | 148 | 72 | 2 | 173 | 302 | 72 | 219 | 9.19e-30 | 115 |
| MsG0180004288.01.T01 | AT1G77160 | 39.041 | 146 | 71 | 2 | 173 | 300 | 22 | 167 | 1.08e-29 | 114 |
| MsG0180004288.01.T01 | AT3G25240 | 40.940 | 149 | 78 | 3 | 155 | 294 | 93 | 240 | 7.00e-29 | 114 |
| MsG0180004288.01.T01 | AT2G20670 | 39.394 | 132 | 72 | 3 | 176 | 300 | 117 | 247 | 5.32e-27 | 109 |
| MsG0180004288.01.T01 | AT1G12030 | 34.177 | 158 | 97 | 4 | 139 | 295 | 79 | 230 | 8.50e-25 | 103 |
| MsG0180004288.01.T01 | AT1G62420 | 31.325 | 166 | 110 | 2 | 133 | 295 | 66 | 230 | 9.59e-25 | 102 |
| MsG0180004288.01.T01 | AT1G77145 | 44.231 | 104 | 48 | 1 | 209 | 302 | 59 | 162 | 1.67e-23 | 97.4 |
Find 105 sgRNAs with CRISPR-Local
Find 129 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GGCGAGACGTGCATTGTTAA+TGG | 0.255163 | 1:+76103574 | None:intergenic |
| CTCTATTAGCGTTCTGGATT+GGG | 0.257663 | 1:+76103710 | None:intergenic |
| ACGGGATGTAATAATGAAAA+TGG | 0.290817 | 1:-76101883 | MsG0180004288.01.T01:three_prime_UTR |
| CGGTGAGAAAATATCTTTGC+AGG | 0.298776 | 1:-76102228 | MsG0180004288.01.T01:CDS |
| TATCTTCTCTATTAGCGTTC+TGG | 0.320600 | 1:+76103704 | None:intergenic |
| AATAGATGCAACTGCTTTAA+CGG | 0.345730 | 1:-76103129 | MsG0180004288.01.T01:CDS |
| GTGGTAATGACTACTGTTTA+TGG | 0.349845 | 1:+76101904 | None:intergenic |
| CTTCGATTTGCAAATCGAAA+TGG | 0.365715 | 1:-76102769 | MsG0180004288.01.T01:CDS |
| GACTTCCTCCACGGCGGGAC+AGG | 0.368324 | 1:+76102395 | None:intergenic |
| TCTCTATTAGCGTTCTGGAT+TGG | 0.377461 | 1:+76103709 | None:intergenic |
| GTGGAGGAAGTCAGAGTATA+TGG | 0.390934 | 1:-76102384 | MsG0180004288.01.T01:CDS |
| GAAAATATCTTTGCAGGAAT+CGG | 0.392848 | 1:-76102222 | MsG0180004288.01.T01:CDS |
| TTTGAGATTGCTCGATCGAC+GGG | 0.423911 | 1:-76102539 | MsG0180004288.01.T01:CDS |
| CGCCGGAATGTTCATTTCAC+CGG | 0.425304 | 1:+76103613 | None:intergenic |
| TTTCCTTCTTCTATGGTTTG+AGG | 0.431240 | 1:+76102084 | None:intergenic |
| TGTATTTCCTTTGAAACAAA+GGG | 0.434432 | 1:-76101943 | MsG0180004288.01.T01:three_prime_UTR |
| GAACACGTGGCGGCGATGAT+TGG | 0.434740 | 1:+76103553 | None:intergenic |
| GTTGCCGACGTGGCAATTAC+CGG | 0.447742 | 1:-76102159 | MsG0180004288.01.T01:CDS |
| GCCGGCGAAGTTCCACTTCC+CGG | 0.448391 | 1:-76103264 | MsG0180004288.01.T01:CDS |
| GACGAAGAACTTGATTTCTT+CGG | 0.451688 | 1:-76103087 | MsG0180004288.01.T01:CDS |
| GCAGAAAATCTTCAATCTCT+AGG | 0.452854 | 1:-76102800 | MsG0180004288.01.T01:CDS |
| TTTGCTAAGGCAACGGAGCT+AGG | 0.455852 | 1:+76103216 | None:intergenic |
| GGTTCATCGGACTTGTCGCC+GGG | 0.456543 | 1:+76103246 | None:intergenic |
| ACAGAGTCCCTTTGTTTCAA+AGG | 0.458771 | 1:+76101936 | None:intergenic |
| CAATAGAACAAACACATTGC+CGG | 0.458931 | 1:-76103651 | MsG0180004288.01.T01:five_prime_UTR |
| GAGTCTGTCACGAAGGTTGT+CGG | 0.460032 | 1:+76102311 | None:intergenic |
| TTCGGCGAATCTATCGCTAC+TGG | 0.460109 | 1:-76103069 | MsG0180004288.01.T01:CDS |
| TCGGACTTGTCGCCGGGAAG+TGG | 0.462109 | 1:+76103252 | None:intergenic |
| AAAGGAGCGACAGTGGTGAC+TGG | 0.464611 | 1:-76102113 | MsG0180004288.01.T01:CDS |
| AGGTTTCTCTGAGAAGTTAG+TGG | 0.470712 | 1:+76103293 | None:intergenic |
| TGAATATATCGATGTGTTTG+TGG | 0.473335 | 1:-76102603 | MsG0180004288.01.T01:CDS |
| AAAGTAAAGAGTGTTGAGAA+AGG | 0.492470 | 1:-76102131 | MsG0180004288.01.T01:CDS |
| GTTTGAGATTGCTCGATCGA+CGG | 0.495268 | 1:-76102540 | MsG0180004288.01.T01:CDS |
| TCGATCGACGGGAACGTTCA+AGG | 0.497302 | 1:-76102528 | MsG0180004288.01.T01:CDS |
| AAAGCATAATCAAAATCAAA+AGG | 0.501310 | 1:-76102027 | MsG0180004288.01.T01:three_prime_UTR |
| CGCCGGTGAAATGAACATTC+CGG | 0.504576 | 1:-76103615 | MsG0180004288.01.T01:five_prime_UTR |
| TTGTATTTCCTTTGAAACAA+AGG | 0.510341 | 1:-76101944 | MsG0180004288.01.T01:three_prime_UTR |
| AAGCAGAGTTTGAAGAAGAA+AGG | 0.517627 | 1:-76102422 | MsG0180004288.01.T01:CDS |
| CTGAATCGATGTCGATCGGT+TGG | 0.517827 | 1:+76103424 | None:intergenic |
| GCAACGGAGCTAGGCTCAAA+CGG | 0.518520 | 1:+76103225 | None:intergenic |
| CGGTTCATCGGACTTGTCGC+CGG | 0.521847 | 1:+76103245 | None:intergenic |
| AGTAACCTTGAGTGCGTCAC+CGG | 0.532317 | 1:+76103032 | None:intergenic |
| TAGCCTCAAACCATAGAAGA+AGG | 0.535681 | 1:-76102087 | MsG0180004288.01.T01:exon |
| GATTTCCCGACGAAAATGTA+AGG | 0.537019 | 1:+76102488 | None:intergenic |
| GTCACGAAGGTTGTCGGTGA+CGG | 0.537918 | 1:+76102317 | None:intergenic |
| GCCGGGAAGTGGAACTTCGC+CGG | 0.539650 | 1:+76103263 | None:intergenic |
| CGACGGTGGTGTTGCCGACG+TGG | 0.539789 | 1:-76102169 | MsG0180004288.01.T01:CDS |
| CAGGAATCGGAAACTGTCTC+CGG | 0.542143 | 1:-76102209 | MsG0180004288.01.T01:CDS |
| AAAGACTCTTCGTGTTCGAC+CGG | 0.544489 | 1:-76103341 | MsG0180004288.01.T01:CDS |
| ACTGGTTCTTTCAACGATGC+CGG | 0.549073 | 1:-76103051 | MsG0180004288.01.T01:CDS |
| GGAACTTCGCCGGCGACGAT+AGG | 0.549626 | 1:+76103273 | None:intergenic |
| CGATGCCGGTGACGCACTCA+AGG | 0.551605 | 1:-76103037 | MsG0180004288.01.T01:intron |
| GCTAGGCTCAAACGGTTCAT+CGG | 0.551711 | 1:+76103233 | None:intergenic |
| CCGGCGAGTTTCACTATCGC+CGG | 0.560249 | 1:+76103632 | None:intergenic |
| TTGACGCGTTTGAAAACTGC+CGG | 0.562462 | 1:+76103322 | None:intergenic |
| TGTTGAGAAAGGAGCGACAG+TGG | 0.564434 | 1:-76102120 | MsG0180004288.01.T01:CDS |
| AATACCTTGTGCGAGTGTTG+CGG | 0.566333 | 1:-76102909 | MsG0180004288.01.T01:CDS |
| TTCAGACGAGATTTCAACAC+AGG | 0.566428 | 1:+76103363 | None:intergenic |
| ACACTCTTTACTTTCACTGC+CGG | 0.566618 | 1:+76102140 | None:intergenic |
| TCAGATCGTCACCGTCGTAT+CGG | 0.567992 | 1:-76102453 | MsG0180004288.01.T01:CDS |
| CGTCACCGTCGTATCGGAGG+CGG | 0.569275 | 1:-76102447 | MsG0180004288.01.T01:CDS |
| AGACGGATTCACTCTGCTGC+AGG | 0.574879 | 1:+76102340 | None:intergenic |
| ATCACTCTCCGACGCAACGC+CGG | 0.579926 | 1:+76102274 | None:intergenic |
| GACTCGAAGGAGGATCTGAC+CGG | 0.581417 | 1:-76102293 | MsG0180004288.01.T01:CDS |
| TTCTCTGAATCGATGTCGAT+CGG | 0.583729 | 1:+76103420 | None:intergenic |
| GGTGAGTGGGAACTGATCTT+CGG | 0.586732 | 1:-76102248 | MsG0180004288.01.T01:CDS |
| CGGAGAGTGATTGTGGTGAG+TGG | 0.590871 | 1:-76102262 | MsG0180004288.01.T01:CDS |
| GAATGCCTGTCCCGCCGTGG+AGG | 0.591996 | 1:-76102400 | MsG0180004288.01.T01:CDS |
| AAAACAAAATCTCATCCAGC+TGG | 0.593313 | 1:-76102743 | MsG0180004288.01.T01:intron |
| GGATCTGACCGGCGTTGCGT+CGG | 0.593452 | 1:-76102282 | MsG0180004288.01.T01:CDS |
| AACCTTCGTGACAGACTCGA+AGG | 0.593595 | 1:-76102306 | MsG0180004288.01.T01:CDS |
| AAGGTTGTCGGTGACGGAGA+CGG | 0.594096 | 1:+76102323 | None:intergenic |
| TGCACTACAGTATTATCTCG+TGG | 0.598652 | 1:+76103531 | None:intergenic |
| ACTCTGACTTCCTCCACGGC+GGG | 0.602994 | 1:+76102390 | None:intergenic |
| ATGTGTTTGTGGAAGGTGAG+AGG | 0.604456 | 1:-76102592 | MsG0180004288.01.T01:CDS |
| CGGATTCACTCTGCTGCAGG+AGG | 0.617962 | 1:+76102343 | None:intergenic |
| GTATTATCTCGTGGAACACG+TGG | 0.621242 | 1:+76103540 | None:intergenic |
| CAGAGTATATGGTAGCTAAG+TGG | 0.623568 | 1:-76102373 | MsG0180004288.01.T01:CDS |
| CTCCTTCGAGTCTGTCACGA+AGG | 0.623645 | 1:+76102304 | None:intergenic |
| GTTGCGTCGGAGAGTGATTG+TGG | 0.627922 | 1:-76102269 | MsG0180004288.01.T01:CDS |
| AAGGAATGCCTGTCCCGCCG+TGG | 0.630360 | 1:-76102403 | MsG0180004288.01.T01:CDS |
| CTCTCCGCAACACTCGCACA+AGG | 0.630481 | 1:+76102905 | None:intergenic |
| GGAGAGTGATTGTGGTGAGT+GGG | 0.630723 | 1:-76102261 | MsG0180004288.01.T01:CDS |
| GAAGAAATCAAGTTCTTCGT+CGG | 0.632676 | 1:+76103089 | None:intergenic |
| TCAGAGAAACCTATCGTCGC+CGG | 0.637917 | 1:-76103282 | MsG0180004288.01.T01:CDS |
| GATCGTCACCGTCGTATCGG+AGG | 0.639360 | 1:-76102450 | MsG0180004288.01.T01:CDS |
| CTTCGCCGCCTCCGATACGA+CGG | 0.640176 | 1:+76102442 | None:intergenic |
| ATATACTCTGACTTCCTCCA+CGG | 0.643784 | 1:+76102386 | None:intergenic |
| ATACGACGGTGACGATCTGA+CGG | 0.644479 | 1:+76102456 | None:intergenic |
| CCGGCGATAGTGAAACTCGC+CGG | 0.645620 | 1:-76103632 | MsG0180004288.01.T01:five_prime_UTR |
| CGATTCAGAGAAGTTAGCCG+TGG | 0.646198 | 1:-76103409 | MsG0180004288.01.T01:CDS |
| TATATCGATGTGTTTGTGGA+AGG | 0.646530 | 1:-76102599 | MsG0180004288.01.T01:CDS |
| TAAACAGTAGTCATTACCAC+GGG | 0.649655 | 1:-76101901 | MsG0180004288.01.T01:three_prime_UTR |
| TCGATCGGTTGGATCTTCAT+CGG | 0.650602 | 1:+76103435 | None:intergenic |
| CACGTCGGCAACACCACCGT+CGG | 0.653432 | 1:+76102170 | None:intergenic |
| GAATCGGAAACTGTCTCCGG+TGG | 0.655145 | 1:-76102206 | MsG0180004288.01.T01:CDS |
| TACTCTGACTTCCTCCACGG+CGG | 0.656636 | 1:+76102389 | None:intergenic |
| TGGTGAGAAAATCTCACCGA+CGG | 0.675741 | 1:-76102186 | MsG0180004288.01.T01:CDS |
| ACTGCCGGTAATTGCCACGT+CGG | 0.691523 | 1:+76102155 | None:intergenic |
| ATAAACAGTAGTCATTACCA+CGG | 0.694310 | 1:-76101902 | MsG0180004288.01.T01:three_prime_UTR |
| AAAACAAAGAGAAATCCGAA+AGG | 0.696222 | 1:+76101973 | None:intergenic |
| TTATCTCGTGGAACACGTGG+CGG | 0.703524 | 1:+76103543 | None:intergenic |
| CTTCGTGACAGACTCGAAGG+AGG | 0.707524 | 1:-76102303 | MsG0180004288.01.T01:CDS |
| TGAGAAAATCTCACCGACGG+TGG | 0.711396 | 1:-76102183 | MsG0180004288.01.T01:CDS |
| GACGTCGTTTCGAACAACCA+CGG | 0.725989 | 1:+76103392 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AAATTTTTTATTTAAATTTT+TGG | - | Chr1:76102843-76102862 | MsG0180004288.01.T01:CDS | 0.0% |
| !! | AAAAAATTTCAAAAAAATTG+GGG | + | Chr1:76102832-76102851 | None:intergenic | 10.0% |
| !!! | AACATTCAATTTTTCAAATT+AGG | + | Chr1:76102883-76102902 | None:intergenic | 15.0% |
| !!! | TTAGTTTAATTTTTACCTTT+CGG | - | Chr1:76103552-76103571 | MsG0180004288.01.T01:five_prime_UTR | 15.0% |
| !! | AAAGCATAATCAAAATCAAA+AGG | - | Chr1:76103513-76103532 | MsG0180004288.01.T01:five_prime_UTR | 20.0% |
| !! | ATTTGAAAAATTGAATGTTG+TGG | - | Chr1:76102884-76102903 | MsG0180004288.01.T01:CDS | 20.0% |
| !! | TATTAAACTCTGCATAAAAA+AGG | + | Chr1:76102615-76102634 | None:intergenic | 20.0% |
| !!! | AAAAACAGTAAAGTTTTCAA+AGG | - | Chr1:76102692-76102711 | MsG0180004288.01.T01:intron | 20.0% |
| !!! | TTTGATTTTGATTTTGATTC+AGG | - | Chr1:76102908-76102927 | MsG0180004288.01.T01:CDS | 20.0% |
| !!! | ACTGTTTTTGTCAACTATTT+TGG | + | Chr1:76102681-76102700 | None:intergenic | 25.0% |
| !!! | CATTGATATTGATTTTCGTT+CGG | - | Chr1:76102976-76102995 | MsG0180004288.01.T01:intron | 25.0% |
| !!! | TGTATTTCCTTTGAAACAAA+GGG | - | Chr1:76103597-76103616 | MsG0180004288.01.T01:five_prime_UTR | 25.0% |
| !!! | TTGTATTTCCTTTGAAACAA+AGG | - | Chr1:76103596-76103615 | MsG0180004288.01.T01:five_prime_UTR | 25.0% |
| AAAACAAAGAGAAATCCGAA+AGG | + | Chr1:76103570-76103589 | None:intergenic | 30.0% | |
| AATAGATGCAACTGCTTTAA+CGG | - | Chr1:76102411-76102430 | MsG0180004288.01.T01:CDS | 30.0% | |
| ACGGGATGTAATAATGAAAA+TGG | - | Chr1:76103657-76103676 | MsG0180004288.01.T01:five_prime_UTR | 30.0% | |
| ATAAACAGTAGTCATTACCA+CGG | - | Chr1:76103638-76103657 | MsG0180004288.01.T01:five_prime_UTR | 30.0% | |
| GAAAATATCTTTGCAGGAAT+CGG | - | Chr1:76103318-76103337 | MsG0180004288.01.T01:CDS | 30.0% | |
| TGAATATATCGATGTGTTTG+TGG | - | Chr1:76102937-76102956 | MsG0180004288.01.T01:intron | 30.0% | |
| ! | ATTTTCATTATTACATCCCG+TGG | + | Chr1:76103658-76103677 | None:intergenic | 30.0% |
| ! | GCAAAATTTTCCTTCTTCTA+TGG | + | Chr1:76103466-76103485 | None:intergenic | 30.0% |
| ! | TTTCTTCCTTACATTTTCGT+CGG | - | Chr1:76103046-76103065 | MsG0180004288.01.T01:CDS | 30.0% |
| !! | AAAGTAAAGAGTGTTGAGAA+AGG | - | Chr1:76103409-76103428 | MsG0180004288.01.T01:CDS | 30.0% |
| !!! | TTCGGATTTCTCTTTGTTTT+CGG | - | Chr1:76103570-76103589 | MsG0180004288.01.T01:five_prime_UTR | 30.0% |
| AAAACAAAATCTCATCCAGC+TGG | - | Chr1:76102797-76102816 | MsG0180004288.01.T01:CDS | 35.0% | |
| AAGCAGAGTTTGAAGAAGAA+AGG | - | Chr1:76103118-76103137 | MsG0180004288.01.T01:CDS | 35.0% | |
| CAATAGAACAAACACATTGC+CGG | - | Chr1:76101889-76101908 | MsG0180004288.01.T01:three_prime_UTR | 35.0% | |
| GAAGAAATCAAGTTCTTCGT+CGG | + | Chr1:76102454-76102473 | None:intergenic | 35.0% | |
| GACGAAGAACTTGATTTCTT+CGG | - | Chr1:76102453-76102472 | MsG0180004288.01.T01:CDS | 35.0% | |
| GCAGAAAATCTTCAATCTCT+AGG | - | Chr1:76102740-76102759 | MsG0180004288.01.T01:intron | 35.0% | |
| TAAACAGTAGTCATTACCAC+GGG | - | Chr1:76103639-76103658 | MsG0180004288.01.T01:five_prime_UTR | 35.0% | |
| TATATCGATGTGTTTGTGGA+AGG | - | Chr1:76102941-76102960 | MsG0180004288.01.T01:intron | 35.0% | |
| TATCTTCTCTATTAGCGTTC+TGG | + | Chr1:76101839-76101858 | None:intergenic | 35.0% | |
| TTTCCTTCTTCTATGGTTTG+AGG | + | Chr1:76103459-76103478 | None:intergenic | 35.0% | |
| ! | CTTCGATTTGCAAATCGAAA+TGG | - | Chr1:76102771-76102790 | MsG0180004288.01.T01:CDS | 35.0% |
| ! | GTGGTAATGACTACTGTTTA+TGG | + | Chr1:76103639-76103658 | None:intergenic | 35.0% |
| ! | TTACATTTTCGTCGGGAAAT+CGG | - | Chr1:76103054-76103073 | MsG0180004288.01.T01:CDS | 35.0% |
| ! | TTCTTCCTTACATTTTCGTC+GGG | - | Chr1:76103047-76103066 | MsG0180004288.01.T01:CDS | 35.0% |
| ACACTCTTTACTTTCACTGC+CGG | + | Chr1:76103403-76103422 | None:intergenic | 40.0% | |
| ATATACTCTGACTTCCTCCA+CGG | + | Chr1:76103157-76103176 | None:intergenic | 40.0% | |
| CAGAGTATATGGTAGCTAAG+TGG | - | Chr1:76103167-76103186 | MsG0180004288.01.T01:CDS | 40.0% | |
| CGGTGAGAAAATATCTTTGC+AGG | - | Chr1:76103312-76103331 | MsG0180004288.01.T01:CDS | 40.0% | |
| GAAAAAGAAGAAACGTTCGC+CGG | + | Chr1:76101947-76101966 | None:intergenic | 40.0% | |
| GATTTCCCGACGAAAATGTA+AGG | + | Chr1:76103055-76103074 | None:intergenic | 40.0% | |
| TAGCCTCAAACCATAGAAGA+AGG | - | Chr1:76103453-76103472 | MsG0180004288.01.T01:exon | 40.0% | |
| TGCACTACAGTATTATCTCG+TGG | + | Chr1:76102012-76102031 | None:intergenic | 40.0% | |
| TTCAGACGAGATTTCAACAC+AGG | + | Chr1:76102180-76102199 | None:intergenic | 40.0% | |
| TTCTCTGAATCGATGTCGAT+CGG | + | Chr1:76102123-76102142 | None:intergenic | 40.0% | |
| ! | ACAGAGTCCCTTTGTTTCAA+AGG | + | Chr1:76103607-76103626 | None:intergenic | 40.0% |
| ! | AGGTTTCTCTGAGAAGTTAG+TGG | + | Chr1:76102250-76102269 | None:intergenic | 40.0% |
| ! | CAAGCACGCATTTTTAACAG+TGG | + | Chr1:76103706-76103725 | None:intergenic | 40.0% |
| !! | ACTCTGCACCATTTTTGCTA+AGG | + | Chr1:76102340-76102359 | None:intergenic | 40.0% |
| !! | CACCATTTTTGCTAAGGCAA+CGG | + | Chr1:76102334-76102353 | None:intergenic | 40.0% |
| AAAGACTCTTCGTGTTCGAC+CGG | - | Chr1:76102199-76102218 | MsG0180004288.01.T01:CDS | 45.0% | |
| ATGTGTTTGTGGAAGGTGAG+AGG | - | Chr1:76102948-76102967 | MsG0180004288.01.T01:intron | 45.0% | |
| CTCCGTTGCCTTAGCAAAAA+TGG | - | Chr1:76102329-76102348 | MsG0180004288.01.T01:CDS | 45.0% | |
| GTATTATCTCGTGGAACACG+TGG | + | Chr1:76102003-76102022 | None:intergenic | 45.0% | |
| GTGGAGGAAGTCAGAGTATA+TGG | - | Chr1:76103156-76103175 | MsG0180004288.01.T01:CDS | 45.0% | |
| TCGATCGGTTGGATCTTCAT+CGG | + | Chr1:76102108-76102127 | None:intergenic | 45.0% | |
| TGGTGAGAAAATCTCACCGA+CGG | - | Chr1:76103354-76103373 | MsG0180004288.01.T01:CDS | 45.0% | |
| TTGACGCGTTTGAAAACTGC+CGG | + | Chr1:76102221-76102240 | None:intergenic | 45.0% | |
| TTGGGGAAAAATGTACCAGC+TGG | + | Chr1:76102815-76102834 | None:intergenic | 45.0% | |
| ! | AATACCTTGTGCGAGTGTTG+CGG | - | Chr1:76102631-76102650 | MsG0180004288.01.T01:intron | 45.0% |
| ! | ACTGGTTCTTTCAACGATGC+CGG | - | Chr1:76102489-76102508 | MsG0180004288.01.T01:CDS | 45.0% |
| ! | GTTTGAGATTGCTCGATCGA+CGG | - | Chr1:76103000-76103019 | MsG0180004288.01.T01:intron | 45.0% |
| ! | TTTGAGATTGCTCGATCGAC+GGG | - | Chr1:76103001-76103020 | MsG0180004288.01.T01:intron | 45.0% |
| !!! | TTGCGAGTGAGTTTTGAGAC+TGG | + | Chr1:76102393-76102412 | None:intergenic | 45.0% |
| !! | ATAAAAAATTTCAAAAAAAT+TGG | + | Chr1:76102834-76102853 | None:intergenic | 5.0% |
| !! | TAAAAAATTTCAAAAAAATT+GGG | + | Chr1:76102833-76102852 | None:intergenic | 5.0% |
| AACCTTCGTGACAGACTCGA+AGG | - | Chr1:76103234-76103253 | MsG0180004288.01.T01:CDS | 50.0% | |
| AGTAACCTTGAGTGCGTCAC+CGG | + | Chr1:76102511-76102530 | None:intergenic | 50.0% | |
| ATACGACGGTGACGATCTGA+CGG | + | Chr1:76103087-76103106 | None:intergenic | 50.0% | |
| CAGGAATCGGAAACTGTCTC+CGG | - | Chr1:76103331-76103350 | MsG0180004288.01.T01:CDS | 50.0% | |
| CGATTCAGAGAAGTTAGCCG+TGG | - | Chr1:76102131-76102150 | MsG0180004288.01.T01:CDS | 50.0% | |
| CGCCGGAATGTTCATTTCAC+CGG | + | Chr1:76101930-76101949 | None:intergenic | 50.0% | |
| CGCCGGTGAAATGAACATTC+CGG | - | Chr1:76101925-76101944 | MsG0180004288.01.T01:three_prime_UTR | 50.0% | |
| CTGAATCGATGTCGATCGGT+TGG | + | Chr1:76102119-76102138 | None:intergenic | 50.0% | |
| GACGTCGTTTCGAACAACCA+CGG | + | Chr1:76102151-76102170 | None:intergenic | 50.0% | |
| GAGTCTGTCACGAAGGTTGT+CGG | + | Chr1:76103232-76103251 | None:intergenic | 50.0% | |
| GCTAGGCTCAAACGGTTCAT+CGG | + | Chr1:76102310-76102329 | None:intergenic | 50.0% | |
| GGAGAGTGATTGTGGTGAGT+GGG | - | Chr1:76103279-76103298 | MsG0180004288.01.T01:CDS | 50.0% | |
| GGCGAGACGTGCATTGTTAA+TGG | + | Chr1:76101969-76101988 | None:intergenic | 50.0% | |
| GGTGAGTGGGAACTGATCTT+CGG | - | Chr1:76103292-76103311 | MsG0180004288.01.T01:CDS | 50.0% | |
| TCAGAGAAACCTATCGTCGC+CGG | - | Chr1:76102258-76102277 | MsG0180004288.01.T01:CDS | 50.0% | |
| TCAGATCGTCACCGTCGTAT+CGG | - | Chr1:76103087-76103106 | MsG0180004288.01.T01:CDS | 50.0% | |
| TGAGAAAATCTCACCGACGG+TGG | - | Chr1:76103357-76103376 | MsG0180004288.01.T01:CDS | 50.0% | |
| TGTTGAGAAAGGAGCGACAG+TGG | - | Chr1:76103420-76103439 | MsG0180004288.01.T01:CDS | 50.0% | |
| TTATCTCGTGGAACACGTGG+CGG | + | Chr1:76102000-76102019 | None:intergenic | 50.0% | |
| TTCGGCGAATCTATCGCTAC+TGG | - | Chr1:76102471-76102490 | MsG0180004288.01.T01:CDS | 50.0% | |
| TTTGCTAAGGCAACGGAGCT+AGG | + | Chr1:76102327-76102346 | None:intergenic | 50.0% | |
| ! | CGGTGAGATTTTCTCACCAC+CGG | + | Chr1:76103353-76103372 | None:intergenic | 50.0% |
| AAAGGAGCGACAGTGGTGAC+TGG | - | Chr1:76103427-76103446 | MsG0180004288.01.T01:CDS | 55.0% | |
| ACTGCCGGTAATTGCCACGT+CGG | + | Chr1:76103388-76103407 | None:intergenic | 55.0% | |
| CGGAGAGTGATTGTGGTGAG+TGG | - | Chr1:76103278-76103297 | MsG0180004288.01.T01:CDS | 55.0% | |
| CTCCTTCGAGTCTGTCACGA+AGG | + | Chr1:76103239-76103258 | None:intergenic | 55.0% | |
| CTTCGTGACAGACTCGAAGG+AGG | - | Chr1:76103237-76103256 | MsG0180004288.01.T01:CDS | 55.0% | |
| GAATCGGAAACTGTCTCCGG+TGG | - | Chr1:76103334-76103353 | MsG0180004288.01.T01:CDS | 55.0% | |
| GACTCGAAGGAGGATCTGAC+CGG | - | Chr1:76103247-76103266 | MsG0180004288.01.T01:CDS | 55.0% | |
| GCAACGGAGCTAGGCTCAAA+CGG | + | Chr1:76102318-76102337 | None:intergenic | 55.0% | |
| GTCACGAAGGTTGTCGGTGA+CGG | + | Chr1:76103226-76103245 | None:intergenic | 55.0% | |
| GTTGCCGACGTGGCAATTAC+CGG | - | Chr1:76103381-76103400 | MsG0180004288.01.T01:CDS | 55.0% | |
| GTTGCGTCGGAGAGTGATTG+TGG | - | Chr1:76103271-76103290 | MsG0180004288.01.T01:CDS | 55.0% | |
| TACTCTGACTTCCTCCACGG+CGG | + | Chr1:76103154-76103173 | None:intergenic | 55.0% | |
| TCGATCGACGGGAACGTTCA+AGG | - | Chr1:76103012-76103031 | MsG0180004288.01.T01:intron | 55.0% | |
| ! | AGACGGATTCACTCTGCTGC+AGG | + | Chr1:76103203-76103222 | None:intergenic | 55.0% |
| !! | AAGGTTGTCGGTGACGGAGA+CGG | + | Chr1:76103220-76103239 | None:intergenic | 55.0% |
| ACTCTGACTTCCTCCACGGC+GGG | + | Chr1:76103153-76103172 | None:intergenic | 60.0% | |
| ATCACTCTCCGACGCAACGC+CGG | + | Chr1:76103269-76103288 | None:intergenic | 60.0% | |
| CCGGCGAGTTTCACTATCGC+CGG | + | Chr1:76101911-76101930 | None:intergenic | 60.0% | |
| CCGGCGATAGTGAAACTCGC+CGG | - | Chr1:76101908-76101927 | MsG0180004288.01.T01:three_prime_UTR | 60.0% | |
| CGGATTCACTCTGCTGCAGG+AGG | + | Chr1:76103200-76103219 | None:intergenic | 60.0% | |
| CGGTTCATCGGACTTGTCGC+CGG | + | Chr1:76102298-76102317 | None:intergenic | 60.0% | |
| CTCTCCGCAACACTCGCACA+AGG | + | Chr1:76102638-76102657 | None:intergenic | 60.0% | |
| GAACACGTGGCGGCGATGAT+TGG | + | Chr1:76101990-76102009 | None:intergenic | 60.0% | |
| GATCGTCACCGTCGTATCGG+AGG | - | Chr1:76103090-76103109 | MsG0180004288.01.T01:CDS | 60.0% | |
| GGTTCATCGGACTTGTCGCC+GGG | + | Chr1:76102297-76102316 | None:intergenic | 60.0% | |
| AAGGAATGCCTGTCCCGCCG+TGG | - | Chr1:76103137-76103156 | MsG0180004288.01.T01:CDS | 65.0% | |
| CACGTCGGCAACACCACCGT+CGG | + | Chr1:76103373-76103392 | None:intergenic | 65.0% | |
| CGATGCCGGTGACGCACTCA+AGG | - | Chr1:76102503-76102522 | MsG0180004288.01.T01:CDS | 65.0% | |
| CGTCACCGTCGTATCGGAGG+CGG | - | Chr1:76103093-76103112 | MsG0180004288.01.T01:CDS | 65.0% | |
| CTTCGCCGCCTCCGATACGA+CGG | + | Chr1:76103101-76103120 | None:intergenic | 65.0% | |
| GCCGGCGAAGTTCCACTTCC+CGG | - | Chr1:76102276-76102295 | MsG0180004288.01.T01:CDS | 65.0% | |
| GCCGGGAAGTGGAACTTCGC+CGG | + | Chr1:76102280-76102299 | None:intergenic | 65.0% | |
| GGAACTTCGCCGGCGACGAT+AGG | + | Chr1:76102270-76102289 | None:intergenic | 65.0% | |
| GGATCTGACCGGCGTTGCGT+CGG | - | Chr1:76103258-76103277 | MsG0180004288.01.T01:CDS | 65.0% | |
| TCGGACTTGTCGCCGGGAAG+TGG | + | Chr1:76102291-76102310 | None:intergenic | 65.0% | |
| GAATGCCTGTCCCGCCGTGG+AGG | - | Chr1:76103140-76103159 | MsG0180004288.01.T01:CDS | 70.0% | |
| GACTTCCTCCACGGCGGGAC+AGG | + | Chr1:76103148-76103167 | None:intergenic | 70.0% | |
| !! | CGACGGTGGTGTTGCCGACG+TGG | - | Chr1:76103371-76103390 | MsG0180004288.01.T01:CDS | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| Chr1 | gene | 76101832 | 76103730 | 76101832 | ID=MsG0180004288.01;Name=MsG0180004288.01 |
| Chr1 | mRNA | 76101832 | 76103730 | 76101832 | ID=MsG0180004288.01.T01;Parent=MsG0180004288.01;Name=MsG0180004288.01.T01;_AED=0.07;_eAED=0.07;_QI=267|1|1|1|1|1|3|262|385 |
| Chr1 | exon | 76101832 | 76102632 | 76101832 | ID=MsG0180004288.01.T01:exon:44796;Parent=MsG0180004288.01.T01 |
| Chr1 | exon | 76102744 | 76102936 | 76102744 | ID=MsG0180004288.01.T01:exon:44795;Parent=MsG0180004288.01.T01 |
| Chr1 | exon | 76103038 | 76103730 | 76103038 | ID=MsG0180004288.01.T01:exon:44794;Parent=MsG0180004288.01.T01 |
| Chr1 | five_prime_UTR | 76103464 | 76103730 | 76103464 | ID=MsG0180004288.01.T01:five_prime_utr;Parent=MsG0180004288.01.T01 |
| Chr1 | CDS | 76103038 | 76103463 | 76103038 | ID=MsG0180004288.01.T01:cds;Parent=MsG0180004288.01.T01 |
| Chr1 | CDS | 76102744 | 76102936 | 76102744 | ID=MsG0180004288.01.T01:cds;Parent=MsG0180004288.01.T01 |
| Chr1 | CDS | 76102094 | 76102632 | 76102094 | ID=MsG0180004288.01.T01:cds;Parent=MsG0180004288.01.T01 |
| Chr1 | three_prime_UTR | 76101832 | 76102093 | 76101832 | ID=MsG0180004288.01.T01:three_prime_utr;Parent=MsG0180004288.01.T01 |
| Gene Sequence |
| Protein sequence |
