Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0180004173.01.T01 | XP_013468766.1 | 95.065 | 385 | 18 | 1 | 1 | 385 | 1 | 384 | 0 | 743 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0180004173.01.T01 | A0A072VMZ8 | 95.065 | 385 | 18 | 1 | 1 | 385 | 1 | 384 | 0.0 | 743 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MsG0180004173.01 | MsG0180004288.01 | 0.869877 | 2.227655e-66 | 8.492715e-63 |
| MsG0180004173.01 | MsG0180004792.01 | -0.804161 | 2.467355e-49 | 1.263143e-46 |
| MsG0180004173.01 | MsG0280007280.01 | 0.819929 | 8.970667e-53 | 6.998692e-50 |
| MsG0180004173.01 | MsG0280007281.01 | 0.819466 | 1.144650e-52 | 8.815519e-50 |
| MsG0180004173.01 | MsG0480020448.01 | 0.873412 | 1.500301e-67 | 6.505505e-64 |
| MsG0180004173.01 | MsG0480022242.01 | -0.804165 | 2.462891e-49 | 1.260974e-46 |
| MsG0180004173.01 | MsG0480022244.01 | -0.802826 | 4.666496e-49 | 2.308754e-46 |
| MsG0180004173.01 | MsG0580029751.01 | -0.809225 | 2.101612e-50 | 1.226993e-47 |
| MsG0180004173.01 | MsG0580030141.01 | 0.815342 | 9.709418e-52 | 6.676663e-49 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0180004173.01.T01 | MTR_1g076500 | 95.065 | 385 | 18 | 1 | 1 | 385 | 1 | 384 | 0.0 | 743 |
| MsG0180004173.01.T01 | MTR_1g041155 | 57.106 | 387 | 124 | 12 | 1 | 382 | 1 | 350 | 2.05e-130 | 379 |
| MsG0180004173.01.T01 | MTR_1g070970 | 50.646 | 387 | 137 | 14 | 4 | 383 | 5 | 344 | 3.05e-102 | 306 |
| MsG0180004173.01.T01 | MTR_7g095960 | 49.482 | 386 | 147 | 15 | 4 | 382 | 5 | 349 | 8.22e-99 | 298 |
| MsG0180004173.01.T01 | MTR_7g083080 | 45.578 | 147 | 74 | 2 | 174 | 315 | 129 | 274 | 1.30e-36 | 135 |
| MsG0180004173.01.T01 | MTR_4g132963 | 42.975 | 121 | 69 | 0 | 176 | 296 | 115 | 235 | 1.60e-33 | 126 |
| MsG0180004173.01.T01 | MTR_4g132940 | 42.975 | 121 | 69 | 0 | 176 | 296 | 115 | 235 | 1.60e-33 | 126 |
| MsG0180004173.01.T01 | MTR_4g132970 | 42.063 | 126 | 73 | 0 | 171 | 296 | 131 | 256 | 2.01e-33 | 127 |
| MsG0180004173.01.T01 | MTR_8g093440 | 41.549 | 142 | 74 | 2 | 176 | 310 | 20 | 159 | 1.52e-32 | 122 |
| MsG0180004173.01.T01 | MTR_8g093440 | 39.024 | 164 | 85 | 4 | 160 | 310 | 60 | 221 | 3.00e-32 | 122 |
| MsG0180004173.01.T01 | MTR_2g025520 | 46.018 | 113 | 61 | 0 | 184 | 296 | 142 | 254 | 4.82e-31 | 120 |
| MsG0180004173.01.T01 | MTR_2g013780 | 39.716 | 141 | 77 | 4 | 173 | 307 | 140 | 278 | 5.75e-29 | 115 |
| MsG0180004173.01.T01 | MTR_4g078310 | 37.324 | 142 | 80 | 3 | 180 | 314 | 123 | 262 | 4.81e-28 | 112 |
| MsG0180004173.01.T01 | MTR_7g053310 | 31.064 | 235 | 130 | 7 | 79 | 303 | 41 | 253 | 4.69e-26 | 106 |
| MsG0180004173.01.T01 | MTR_4g088770 | 36.220 | 127 | 75 | 2 | 174 | 294 | 147 | 273 | 1.25e-25 | 105 |
| MsG0180004173.01.T01 | MTR_4g088760 | 37.190 | 121 | 70 | 2 | 180 | 294 | 206 | 326 | 1.86e-25 | 106 |
| MsG0180004173.01.T01 | MTR_8g012240 | 28.205 | 234 | 146 | 5 | 77 | 303 | 47 | 265 | 1.59e-24 | 102 |
| MsG0180004173.01.T01 | MTR_5g008720 | 35.252 | 139 | 79 | 2 | 176 | 308 | 97 | 230 | 2.75e-24 | 100 |
| MsG0180004173.01.T01 | MTR_2g013880 | 30.719 | 153 | 99 | 3 | 173 | 319 | 140 | 291 | 5.89e-23 | 98.6 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0180004173.01.T01 | AT3G22970 | 60.831 | 337 | 117 | 8 | 4 | 337 | 5 | 329 | 1.10e-118 | 349 |
| MsG0180004173.01.T01 | AT4G14620 | 51.804 | 388 | 125 | 14 | 4 | 383 | 2 | 335 | 4.33e-106 | 316 |
| MsG0180004173.01.T01 | AT2G38820 | 50.667 | 300 | 116 | 11 | 4 | 296 | 5 | 279 | 3.70e-87 | 266 |
| MsG0180004173.01.T01 | AT3G22970 | 62.437 | 197 | 73 | 1 | 141 | 337 | 23 | 218 | 4.94e-74 | 231 |
| MsG0180004173.01.T01 | AT3G54550 | 42.568 | 296 | 131 | 9 | 5 | 295 | 6 | 267 | 4.97e-63 | 204 |
| MsG0180004173.01.T01 | AT2G38820 | 44.550 | 211 | 85 | 11 | 4 | 207 | 5 | 190 | 6.09e-36 | 131 |
| MsG0180004173.01.T01 | AT2G39650 | 41.045 | 134 | 73 | 1 | 176 | 303 | 48 | 181 | 9.57e-32 | 120 |
| MsG0180004173.01.T01 | AT2G39650 | 41.045 | 134 | 73 | 1 | 176 | 303 | 110 | 243 | 1.99e-31 | 121 |
| MsG0180004173.01.T01 | AT3G07350 | 39.568 | 139 | 78 | 1 | 176 | 308 | 135 | 273 | 2.51e-31 | 121 |
| MsG0180004173.01.T01 | AT4G32480 | 39.355 | 155 | 82 | 4 | 176 | 324 | 116 | 264 | 1.51e-30 | 118 |
| MsG0180004173.01.T01 | AT1G77160 | 33.149 | 181 | 100 | 3 | 141 | 300 | 42 | 222 | 1.56e-30 | 118 |
| MsG0180004173.01.T01 | AT1G77145 | 39.189 | 148 | 72 | 2 | 173 | 302 | 72 | 219 | 9.00e-30 | 115 |
| MsG0180004173.01.T01 | AT1G77160 | 39.041 | 146 | 71 | 2 | 173 | 300 | 22 | 167 | 1.00e-29 | 114 |
| MsG0180004173.01.T01 | AT3G25240 | 40.940 | 149 | 78 | 3 | 155 | 294 | 93 | 240 | 7.15e-29 | 114 |
| MsG0180004173.01.T01 | AT2G20670 | 39.394 | 132 | 72 | 3 | 176 | 300 | 117 | 247 | 5.05e-27 | 109 |
| MsG0180004173.01.T01 | AT1G12030 | 34.177 | 158 | 97 | 4 | 139 | 295 | 79 | 230 | 8.50e-25 | 103 |
| MsG0180004173.01.T01 | AT1G62420 | 31.325 | 166 | 110 | 2 | 133 | 295 | 66 | 230 | 1.02e-24 | 102 |
| MsG0180004173.01.T01 | AT1G77145 | 44.231 | 104 | 48 | 1 | 209 | 302 | 59 | 162 | 1.66e-23 | 97.4 |
Find 104 sgRNAs with CRISPR-Local
Find 130 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTCTATTAGCGTTCTGGATT+AGG | 0.250555 | 1:+74422399 | None:intergenic |
| GGCGAGACGTGCATTGTTAA+TGG | 0.255163 | 1:+74422263 | None:intergenic |
| ACGGGATGTAATAATGAAAA+TGG | 0.290817 | 1:-74420578 | MsG0180004173.01.T01:three_prime_UTR |
| CGGTGAGAAAATATCTTTGC+AGG | 0.298776 | 1:-74420922 | MsG0180004173.01.T01:CDS |
| TATCTTCTCTATTAGCGTTC+TGG | 0.320600 | 1:+74422393 | None:intergenic |
| AATAGATGCAACTGCTTTAA+CGG | 0.345730 | 1:-74421817 | MsG0180004173.01.T01:CDS |
| GTGGTAATGACTACTGTTTA+TGG | 0.349845 | 1:+74420599 | None:intergenic |
| CTTCGATTTGCAAATCGAAA+TGG | 0.365715 | 1:-74421457 | MsG0180004173.01.T01:CDS |
| GACTTCCTCCACGGCGGGAC+AGG | 0.368324 | 1:+74421089 | None:intergenic |
| GTGGAGGAAGTCAGAGTATA+TGG | 0.390934 | 1:-74421078 | MsG0180004173.01.T01:CDS |
| GAAAATATCTTTGCAGGAAT+CGG | 0.392848 | 1:-74420916 | MsG0180004173.01.T01:CDS |
| TTTGAGATTGCTCGATCGAC+GGG | 0.423911 | 1:-74421233 | MsG0180004173.01.T01:CDS |
| CGCCGGAATGTTCATTTCAC+CGG | 0.425304 | 1:+74422302 | None:intergenic |
| TTCGGAGAATCTATCGCTAC+TGG | 0.430931 | 1:-74421757 | MsG0180004173.01.T01:CDS |
| GACGAAGAACTTGATTTCTT+CGG | 0.430952 | 1:-74421775 | MsG0180004173.01.T01:CDS |
| TTTCCTTCTTCTATGGTTTG+AGG | 0.431240 | 1:+74420778 | None:intergenic |
| TGTATTTCCTTTGAAACAAA+GGG | 0.434432 | 1:-74420638 | MsG0180004173.01.T01:three_prime_UTR |
| GAACACGTGGCGGCGATGAT+TGG | 0.434740 | 1:+74422242 | None:intergenic |
| GTTGCCGACGTGGCAATTAC+CGG | 0.447742 | 1:-74420853 | MsG0180004173.01.T01:CDS |
| GCCGGCGAAGTTCCACTTCC+CGG | 0.448391 | 1:-74421952 | MsG0180004173.01.T01:CDS |
| GCAGAAAATCTTCAATCTCT+AGG | 0.452854 | 1:-74421488 | MsG0180004173.01.T01:CDS |
| TTTGCTAAGGCAACGGAGCT+AGG | 0.455852 | 1:+74421904 | None:intergenic |
| GGTTCATCGGACTTGTCGCC+GGG | 0.456543 | 1:+74421934 | None:intergenic |
| ACAGAGTCCCTTTGTTTCAA+AGG | 0.458771 | 1:+74420631 | None:intergenic |
| CAATAGAACAAACACATTGC+CGG | 0.458931 | 1:-74422340 | MsG0180004173.01.T01:five_prime_UTR |
| GAGTCTGTCACGAAGGTTGT+CGG | 0.460032 | 1:+74421005 | None:intergenic |
| TCGGACTTGTCGCCGGGAAG+TGG | 0.462109 | 1:+74421940 | None:intergenic |
| AAAGGAGCGACAGTGGTGAC+TGG | 0.464611 | 1:-74420807 | MsG0180004173.01.T01:CDS |
| AGGTTTCTCTGAGAAGTTAG+TGG | 0.470712 | 1:+74421981 | None:intergenic |
| TGAATATATCGATGTGTTTG+TGG | 0.473335 | 1:-74421297 | MsG0180004173.01.T01:CDS |
| AAACAGAGTTTGAAGAAGAA+AGG | 0.479553 | 1:-74421116 | MsG0180004173.01.T01:CDS |
| AAAGTAAAGAGTGTTGAGAA+AGG | 0.492470 | 1:-74420825 | MsG0180004173.01.T01:CDS |
| GTTTGAGATTGCTCGATCGA+CGG | 0.495268 | 1:-74421234 | MsG0180004173.01.T01:CDS |
| TCGATCGACGGGAACGTTCA+AGG | 0.497302 | 1:-74421222 | MsG0180004173.01.T01:CDS |
| AAAGCATAATCAAAATCAAA+AGG | 0.501310 | 1:-74420721 | MsG0180004173.01.T01:three_prime_UTR |
| CGCCGGTGAAATGAACATTC+CGG | 0.504576 | 1:-74422304 | MsG0180004173.01.T01:five_prime_UTR |
| TTGTATTTCCTTTGAAACAA+AGG | 0.510341 | 1:-74420639 | MsG0180004173.01.T01:three_prime_UTR |
| CTGAATCGATGTCGATCGGT+TGG | 0.517827 | 1:+74422112 | None:intergenic |
| GCAACGGAGCTAGGCTCAAA+CGG | 0.518520 | 1:+74421913 | None:intergenic |
| CGGTTCATCGGACTTGTCGC+CGG | 0.521847 | 1:+74421933 | None:intergenic |
| AGTAACCTTGAGTGCGTCAC+CGG | 0.532317 | 1:+74421720 | None:intergenic |
| TAGCCTCAAACCATAGAAGA+AGG | 0.535681 | 1:-74420781 | MsG0180004173.01.T01:exon |
| GATTTCCCGACGAAAATGTA+AGG | 0.537019 | 1:+74421182 | None:intergenic |
| GTCACGAAGGTTGTCGGTGA+CGG | 0.537918 | 1:+74421011 | None:intergenic |
| GCCGGGAAGTGGAACTTCGC+CGG | 0.539650 | 1:+74421951 | None:intergenic |
| CGACGGTGGTGTTGCCGACG+TGG | 0.539789 | 1:-74420863 | MsG0180004173.01.T01:CDS |
| CAGGAATCGGAAACTGTCTC+CGG | 0.542143 | 1:-74420903 | MsG0180004173.01.T01:CDS |
| AAAGACTCTTCGTGTTCGAC+CGG | 0.544489 | 1:-74422029 | MsG0180004173.01.T01:CDS |
| ACTGGTTCTTTCAACGATGC+CGG | 0.549073 | 1:-74421739 | MsG0180004173.01.T01:CDS |
| GGAACTTCGCCGGCGACGAT+AGG | 0.549626 | 1:+74421961 | None:intergenic |
| CGATGCCGGTGACGCACTCA+AGG | 0.551605 | 1:-74421725 | MsG0180004173.01.T01:intron |
| GCTAGGCTCAAACGGTTCAT+CGG | 0.551711 | 1:+74421921 | None:intergenic |
| TTGACGCGTTTGAAAACTGC+CGG | 0.553440 | 1:+74422010 | None:intergenic |
| CCGGCGAGTTTCACTATCGC+CGG | 0.560249 | 1:+74422321 | None:intergenic |
| TGTTGAGAAAGGAGCGACAG+TGG | 0.564434 | 1:-74420814 | MsG0180004173.01.T01:CDS |
| AATACCTTGTGCGAGTGTTG+CGG | 0.566333 | 1:-74421597 | MsG0180004173.01.T01:CDS |
| TTCAGACGAGATTTCAACAC+AGG | 0.566428 | 1:+74422051 | None:intergenic |
| ACACTCTTTACTTTCACTGC+CGG | 0.566618 | 1:+74420834 | None:intergenic |
| TCAGATCGTCACCGTCGTAT+CGG | 0.567992 | 1:-74421147 | MsG0180004173.01.T01:CDS |
| CGTCACCGTCGTATCGGAGG+CGG | 0.569275 | 1:-74421141 | MsG0180004173.01.T01:CDS |
| AGACGGATTCACTCTGCTGC+AGG | 0.574879 | 1:+74421034 | None:intergenic |
| ATCACTCTCCGACGCAACGC+CGG | 0.579926 | 1:+74420968 | None:intergenic |
| GACTCGAAGGAGGATCTGAC+CGG | 0.581417 | 1:-74420987 | MsG0180004173.01.T01:CDS |
| TTCTCTGAATCGATGTCGAT+CGG | 0.583729 | 1:+74422108 | None:intergenic |
| GGTGAGTGGGAACTGATCTT+CGG | 0.586732 | 1:-74420942 | MsG0180004173.01.T01:CDS |
| CGGAGAGTGATTGTGGTGAG+TGG | 0.590871 | 1:-74420956 | MsG0180004173.01.T01:CDS |
| GAATGCCTGTCCCGCCGTGG+AGG | 0.591996 | 1:-74421094 | MsG0180004173.01.T01:CDS |
| AAAACAAAATCTCATCCAGC+TGG | 0.593313 | 1:-74421431 | MsG0180004173.01.T01:intron |
| GGATCTGACCGGCGTTGCGT+CGG | 0.593452 | 1:-74420976 | MsG0180004173.01.T01:CDS |
| AACCTTCGTGACAGACTCGA+AGG | 0.593595 | 1:-74421000 | MsG0180004173.01.T01:CDS |
| AAGGTTGTCGGTGACGGAGA+CGG | 0.594096 | 1:+74421017 | None:intergenic |
| TGCACTACAGTATTATCTCG+TGG | 0.598652 | 1:+74422220 | None:intergenic |
| ACTCTGACTTCCTCCACGGC+GGG | 0.602994 | 1:+74421084 | None:intergenic |
| ATGTGTTTGTGGAAGGTGAG+AGG | 0.604456 | 1:-74421286 | MsG0180004173.01.T01:CDS |
| CGGATTCACTCTGCTGCAGG+AGG | 0.617962 | 1:+74421037 | None:intergenic |
| GTATTATCTCGTGGAACACG+TGG | 0.621242 | 1:+74422229 | None:intergenic |
| CAGAGTATATGGTAGCTAAG+TGG | 0.623568 | 1:-74421067 | MsG0180004173.01.T01:CDS |
| CTCCTTCGAGTCTGTCACGA+AGG | 0.623645 | 1:+74420998 | None:intergenic |
| GTTGCGTCGGAGAGTGATTG+TGG | 0.627922 | 1:-74420963 | MsG0180004173.01.T01:CDS |
| GAAGAAATCAAGTTCTTCGT+CGG | 0.630193 | 1:+74421777 | None:intergenic |
| AAGGAATGCCTGTCCCGCCG+TGG | 0.630360 | 1:-74421097 | MsG0180004173.01.T01:CDS |
| CTCTCCGCAACACTCGCACA+AGG | 0.630481 | 1:+74421593 | None:intergenic |
| GGAGAGTGATTGTGGTGAGT+GGG | 0.630723 | 1:-74420955 | MsG0180004173.01.T01:CDS |
| TCAGAGAAACCTATCGTCGC+CGG | 0.637917 | 1:-74421970 | MsG0180004173.01.T01:CDS |
| GATCGTCACCGTCGTATCGG+AGG | 0.639360 | 1:-74421144 | MsG0180004173.01.T01:CDS |
| ATATACTCTGACTTCCTCCA+CGG | 0.643784 | 1:+74421080 | None:intergenic |
| ATACGACGGTGACGATCTGA+CGG | 0.644479 | 1:+74421150 | None:intergenic |
| CCGGCGATAGTGAAACTCGC+CGG | 0.645620 | 1:-74422321 | MsG0180004173.01.T01:five_prime_UTR |
| CGATTCAGAGAAGTTAGCCG+TGG | 0.646198 | 1:-74422097 | MsG0180004173.01.T01:CDS |
| TATATCGATGTGTTTGTGGA+AGG | 0.646530 | 1:-74421293 | MsG0180004173.01.T01:CDS |
| TTTCGCCGCCTCCGATACGA+CGG | 0.648075 | 1:+74421136 | None:intergenic |
| TAAACAGTAGTCATTACCAC+GGG | 0.649655 | 1:-74420596 | MsG0180004173.01.T01:three_prime_UTR |
| TCGATCGGTTGGATCTTCAT+CGG | 0.650602 | 1:+74422123 | None:intergenic |
| CACGTCGGCAACACCACCGT+CGG | 0.653432 | 1:+74420864 | None:intergenic |
| GAATCGGAAACTGTCTCCGG+TGG | 0.655145 | 1:-74420900 | MsG0180004173.01.T01:CDS |
| TACTCTGACTTCCTCCACGG+CGG | 0.656636 | 1:+74421083 | None:intergenic |
| TGGTGAGAAAATCTCACCGA+CGG | 0.675741 | 1:-74420880 | MsG0180004173.01.T01:CDS |
| ACTGCCGGTAATTGCCACGT+CGG | 0.691523 | 1:+74420849 | None:intergenic |
| ATAAACAGTAGTCATTACCA+CGG | 0.694310 | 1:-74420597 | MsG0180004173.01.T01:three_prime_UTR |
| AAAACAAAGAGAAATCCGAA+AGG | 0.696222 | 1:+74420668 | None:intergenic |
| TTATCTCGTGGAACACGTGG+CGG | 0.703524 | 1:+74422232 | None:intergenic |
| CTTCGTGACAGACTCGAAGG+AGG | 0.707524 | 1:-74420997 | MsG0180004173.01.T01:CDS |
| TGAGAAAATCTCACCGACGG+TGG | 0.711396 | 1:-74420877 | MsG0180004173.01.T01:CDS |
| GACGTCGTTTCGAACAACCA+CGG | 0.725989 | 1:+74422080 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AAATTTTTTATTTAAATTTT+TGG | - | Chr1:74421538-74421557 | MsG0180004173.01.T01:CDS | 0.0% |
| !! | AAAAAATTTCAAAAAAATTG+GGG | + | Chr1:74421527-74421546 | None:intergenic | 10.0% |
| !!! | AACATTCAATTTTTCAAATT+AGG | + | Chr1:74421578-74421597 | None:intergenic | 15.0% |
| !!! | TTAGTTTAATTTTTACCTTT+CGG | - | Chr1:74422240-74422259 | MsG0180004173.01.T01:five_prime_UTR | 15.0% |
| !! | AAAGCATAATCAAAATCAAA+AGG | - | Chr1:74422202-74422221 | MsG0180004173.01.T01:five_prime_UTR | 20.0% |
| !! | ATTTGAAAAATTGAATGTTG+TGG | - | Chr1:74421579-74421598 | MsG0180004173.01.T01:CDS | 20.0% |
| !! | TATTAAACTCTGCATAAAAA+AGG | + | Chr1:74421310-74421329 | None:intergenic | 20.0% |
| !!! | AAAAACAGTAAAGTTTTCAA+AGG | - | Chr1:74421387-74421406 | MsG0180004173.01.T01:intron | 20.0% |
| !!! | ACTGTTTTTGTCAACTATTT+TGG | + | Chr1:74421376-74421395 | None:intergenic | 25.0% |
| !!! | CATTGATATTGATTTTCGTT+CGG | - | Chr1:74421665-74421684 | MsG0180004173.01.T01:intron | 25.0% |
| !!! | TGTATTTCCTTTGAAACAAA+GGG | - | Chr1:74422285-74422304 | MsG0180004173.01.T01:five_prime_UTR | 25.0% |
| !!! | TTGTATTTCCTTTGAAACAA+AGG | - | Chr1:74422284-74422303 | MsG0180004173.01.T01:five_prime_UTR | 25.0% |
| AAAACAAAGAGAAATCCGAA+AGG | + | Chr1:74422258-74422277 | None:intergenic | 30.0% | |
| AAACAGAGTTTGAAGAAGAA+AGG | - | Chr1:74421807-74421826 | MsG0180004173.01.T01:CDS | 30.0% | |
| AATAGATGCAACTGCTTTAA+CGG | - | Chr1:74421106-74421125 | MsG0180004173.01.T01:CDS | 30.0% | |
| ACGGGATGTAATAATGAAAA+TGG | - | Chr1:74422345-74422364 | MsG0180004173.01.T01:five_prime_UTR | 30.0% | |
| ATAAACAGTAGTCATTACCA+CGG | - | Chr1:74422326-74422345 | MsG0180004173.01.T01:five_prime_UTR | 30.0% | |
| GAAAATATCTTTGCAGGAAT+CGG | - | Chr1:74422007-74422026 | MsG0180004173.01.T01:CDS | 30.0% | |
| TGAATATATCGATGTGTTTG+TGG | - | Chr1:74421626-74421645 | MsG0180004173.01.T01:intron | 30.0% | |
| ! | ATTTTCATTATTACATCCCG+TGG | + | Chr1:74422346-74422365 | None:intergenic | 30.0% |
| ! | GCAAAATTTTCCTTCTTCTA+TGG | + | Chr1:74422155-74422174 | None:intergenic | 30.0% |
| ! | TTTCTTCCTTACATTTTCGT+CGG | - | Chr1:74421735-74421754 | MsG0180004173.01.T01:CDS | 30.0% |
| !! | AAAGTAAAGAGTGTTGAGAA+AGG | - | Chr1:74422098-74422117 | MsG0180004173.01.T01:CDS | 30.0% |
| !!! | TGTGGTTTTGATTTTGATTC+AGG | - | Chr1:74421597-74421616 | MsG0180004173.01.T01:CDS | 30.0% |
| !!! | TTCGGATTTCTCTTTGTTTT+CGG | - | Chr1:74422258-74422277 | MsG0180004173.01.T01:five_prime_UTR | 30.0% |
| AAAACAAAATCTCATCCAGC+TGG | - | Chr1:74421492-74421511 | MsG0180004173.01.T01:CDS | 35.0% | |
| CAATAGAACAAACACATTGC+CGG | - | Chr1:74420583-74420602 | MsG0180004173.01.T01:three_prime_UTR | 35.0% | |
| GAAGAAATCAAGTTCTTCGT+CGG | + | Chr1:74421149-74421168 | None:intergenic | 35.0% | |
| GACGAAGAACTTGATTTCTT+CGG | - | Chr1:74421148-74421167 | MsG0180004173.01.T01:CDS | 35.0% | |
| GCAGAAAATCTTCAATCTCT+AGG | - | Chr1:74421435-74421454 | MsG0180004173.01.T01:CDS | 35.0% | |
| TAAACAGTAGTCATTACCAC+GGG | - | Chr1:74422327-74422346 | MsG0180004173.01.T01:five_prime_UTR | 35.0% | |
| TATATCGATGTGTTTGTGGA+AGG | - | Chr1:74421630-74421649 | MsG0180004173.01.T01:intron | 35.0% | |
| TATCTTCTCTATTAGCGTTC+TGG | + | Chr1:74420533-74420552 | None:intergenic | 35.0% | |
| TTTCCTTCTTCTATGGTTTG+AGG | + | Chr1:74422148-74422167 | None:intergenic | 35.0% | |
| ! | CTTCGATTTGCAAATCGAAA+TGG | - | Chr1:74421466-74421485 | MsG0180004173.01.T01:CDS | 35.0% |
| ! | GTGGTAATGACTACTGTTTA+TGG | + | Chr1:74422327-74422346 | None:intergenic | 35.0% |
| ! | TTACATTTTCGTCGGGAAAT+CGG | - | Chr1:74421743-74421762 | MsG0180004173.01.T01:CDS | 35.0% |
| ! | TTCTTCCTTACATTTTCGTC+GGG | - | Chr1:74421736-74421755 | MsG0180004173.01.T01:CDS | 35.0% |
| !! | TGTAGTGCAGTGTAGTTTTA+CGG | - | Chr1:74420717-74420736 | MsG0180004173.01.T01:three_prime_UTR | 35.0% |
| ACACTCTTTACTTTCACTGC+CGG | + | Chr1:74422092-74422111 | None:intergenic | 40.0% | |
| ATATACTCTGACTTCCTCCA+CGG | + | Chr1:74421846-74421865 | None:intergenic | 40.0% | |
| CAGAGTATATGGTAGCTAAG+TGG | - | Chr1:74421856-74421875 | MsG0180004173.01.T01:CDS | 40.0% | |
| CGGTGAGAAAATATCTTTGC+AGG | - | Chr1:74422001-74422020 | MsG0180004173.01.T01:CDS | 40.0% | |
| GAAAAAGAAGAAACGTTCGC+CGG | + | Chr1:74420641-74420660 | None:intergenic | 40.0% | |
| GATTTCCCGACGAAAATGTA+AGG | + | Chr1:74421744-74421763 | None:intergenic | 40.0% | |
| TAGCCTCAAACCATAGAAGA+AGG | - | Chr1:74422142-74422161 | MsG0180004173.01.T01:exon | 40.0% | |
| TGCACTACAGTATTATCTCG+TGG | + | Chr1:74420706-74420725 | None:intergenic | 40.0% | |
| TTCAGACGAGATTTCAACAC+AGG | + | Chr1:74420875-74420894 | None:intergenic | 40.0% | |
| TTCTCTGAATCGATGTCGAT+CGG | + | Chr1:74420818-74420837 | None:intergenic | 40.0% | |
| ! | ACAGAGTCCCTTTGTTTCAA+AGG | + | Chr1:74422295-74422314 | None:intergenic | 40.0% |
| ! | AGGTTTCTCTGAGAAGTTAG+TGG | + | Chr1:74420945-74420964 | None:intergenic | 40.0% |
| ! | CAAGCACGCATTTTTAACAG+TGG | + | Chr1:74422394-74422413 | None:intergenic | 40.0% |
| !! | ACTCTGCACCATTTTTGCTA+AGG | + | Chr1:74421035-74421054 | None:intergenic | 40.0% |
| !! | CACCATTTTTGCTAAGGCAA+CGG | + | Chr1:74421029-74421048 | None:intergenic | 40.0% |
| AAAGACTCTTCGTGTTCGAC+CGG | - | Chr1:74420894-74420913 | MsG0180004173.01.T01:CDS | 45.0% | |
| ATGTGTTTGTGGAAGGTGAG+AGG | - | Chr1:74421637-74421656 | MsG0180004173.01.T01:intron | 45.0% | |
| CTCCGTTGCCTTAGCAAAAA+TGG | - | Chr1:74421024-74421043 | MsG0180004173.01.T01:CDS | 45.0% | |
| GTATTATCTCGTGGAACACG+TGG | + | Chr1:74420697-74420716 | None:intergenic | 45.0% | |
| GTGGAGGAAGTCAGAGTATA+TGG | - | Chr1:74421845-74421864 | MsG0180004173.01.T01:CDS | 45.0% | |
| TCGATCGGTTGGATCTTCAT+CGG | + | Chr1:74420803-74420822 | None:intergenic | 45.0% | |
| TGGTGAGAAAATCTCACCGA+CGG | - | Chr1:74422043-74422062 | MsG0180004173.01.T01:CDS | 45.0% | |
| TTCGGAGAATCTATCGCTAC+TGG | - | Chr1:74421166-74421185 | MsG0180004173.01.T01:CDS | 45.0% | |
| TTGACGCGTTTGAAAACTGC+CGG | + | Chr1:74420916-74420935 | None:intergenic | 45.0% | |
| TTGGGGAAAAATGTACCAGC+TGG | + | Chr1:74421510-74421529 | None:intergenic | 45.0% | |
| ! | AATACCTTGTGCGAGTGTTG+CGG | - | Chr1:74421326-74421345 | MsG0180004173.01.T01:intron | 45.0% |
| ! | ACTGGTTCTTTCAACGATGC+CGG | - | Chr1:74421184-74421203 | MsG0180004173.01.T01:CDS | 45.0% |
| ! | GTTTGAGATTGCTCGATCGA+CGG | - | Chr1:74421689-74421708 | MsG0180004173.01.T01:intron | 45.0% |
| ! | TTTGAGATTGCTCGATCGAC+GGG | - | Chr1:74421690-74421709 | MsG0180004173.01.T01:intron | 45.0% |
| !!! | TTGCGAGTGAGTTTTGAGAC+TGG | + | Chr1:74421088-74421107 | None:intergenic | 45.0% |
| !! | ATAAAAAATTTCAAAAAAAT+TGG | + | Chr1:74421529-74421548 | None:intergenic | 5.0% |
| !! | TAAAAAATTTCAAAAAAATT+GGG | + | Chr1:74421528-74421547 | None:intergenic | 5.0% |
| AACCTTCGTGACAGACTCGA+AGG | - | Chr1:74421923-74421942 | MsG0180004173.01.T01:CDS | 50.0% | |
| AGTAACCTTGAGTGCGTCAC+CGG | + | Chr1:74421206-74421225 | None:intergenic | 50.0% | |
| ATACGACGGTGACGATCTGA+CGG | + | Chr1:74421776-74421795 | None:intergenic | 50.0% | |
| CAGGAATCGGAAACTGTCTC+CGG | - | Chr1:74422020-74422039 | MsG0180004173.01.T01:CDS | 50.0% | |
| CGATTCAGAGAAGTTAGCCG+TGG | - | Chr1:74420826-74420845 | MsG0180004173.01.T01:CDS | 50.0% | |
| CGCCGGAATGTTCATTTCAC+CGG | + | Chr1:74420624-74420643 | None:intergenic | 50.0% | |
| CGCCGGTGAAATGAACATTC+CGG | - | Chr1:74420619-74420638 | MsG0180004173.01.T01:three_prime_UTR | 50.0% | |
| CTGAATCGATGTCGATCGGT+TGG | + | Chr1:74420814-74420833 | None:intergenic | 50.0% | |
| GACGTCGTTTCGAACAACCA+CGG | + | Chr1:74420846-74420865 | None:intergenic | 50.0% | |
| GAGTCTGTCACGAAGGTTGT+CGG | + | Chr1:74421921-74421940 | None:intergenic | 50.0% | |
| GCTAGGCTCAAACGGTTCAT+CGG | + | Chr1:74421005-74421024 | None:intergenic | 50.0% | |
| GGAGAGTGATTGTGGTGAGT+GGG | - | Chr1:74421968-74421987 | MsG0180004173.01.T01:CDS | 50.0% | |
| GGCGAGACGTGCATTGTTAA+TGG | + | Chr1:74420663-74420682 | None:intergenic | 50.0% | |
| GGTGAGTGGGAACTGATCTT+CGG | - | Chr1:74421981-74422000 | MsG0180004173.01.T01:CDS | 50.0% | |
| TCAGAGAAACCTATCGTCGC+CGG | - | Chr1:74420953-74420972 | MsG0180004173.01.T01:CDS | 50.0% | |
| TCAGATCGTCACCGTCGTAT+CGG | - | Chr1:74421776-74421795 | MsG0180004173.01.T01:CDS | 50.0% | |
| TGAGAAAATCTCACCGACGG+TGG | - | Chr1:74422046-74422065 | MsG0180004173.01.T01:CDS | 50.0% | |
| TGTTGAGAAAGGAGCGACAG+TGG | - | Chr1:74422109-74422128 | MsG0180004173.01.T01:CDS | 50.0% | |
| TTATCTCGTGGAACACGTGG+CGG | + | Chr1:74420694-74420713 | None:intergenic | 50.0% | |
| TTTGCTAAGGCAACGGAGCT+AGG | + | Chr1:74421022-74421041 | None:intergenic | 50.0% | |
| ! | CGGTGAGATTTTCTCACCAC+CGG | + | Chr1:74422042-74422061 | None:intergenic | 50.0% |
| AAAGGAGCGACAGTGGTGAC+TGG | - | Chr1:74422116-74422135 | MsG0180004173.01.T01:CDS | 55.0% | |
| ACTGCCGGTAATTGCCACGT+CGG | + | Chr1:74422077-74422096 | None:intergenic | 55.0% | |
| CGGAGAGTGATTGTGGTGAG+TGG | - | Chr1:74421967-74421986 | MsG0180004173.01.T01:CDS | 55.0% | |
| CTCCTTCGAGTCTGTCACGA+AGG | + | Chr1:74421928-74421947 | None:intergenic | 55.0% | |
| CTTCGTGACAGACTCGAAGG+AGG | - | Chr1:74421926-74421945 | MsG0180004173.01.T01:CDS | 55.0% | |
| GAATCGGAAACTGTCTCCGG+TGG | - | Chr1:74422023-74422042 | MsG0180004173.01.T01:CDS | 55.0% | |
| GACTCGAAGGAGGATCTGAC+CGG | - | Chr1:74421936-74421955 | MsG0180004173.01.T01:CDS | 55.0% | |
| GCAACGGAGCTAGGCTCAAA+CGG | + | Chr1:74421013-74421032 | None:intergenic | 55.0% | |
| GTCACGAAGGTTGTCGGTGA+CGG | + | Chr1:74421915-74421934 | None:intergenic | 55.0% | |
| GTTGCCGACGTGGCAATTAC+CGG | - | Chr1:74422070-74422089 | MsG0180004173.01.T01:CDS | 55.0% | |
| GTTGCGTCGGAGAGTGATTG+TGG | - | Chr1:74421960-74421979 | MsG0180004173.01.T01:CDS | 55.0% | |
| TACTCTGACTTCCTCCACGG+CGG | + | Chr1:74421843-74421862 | None:intergenic | 55.0% | |
| TCGATCGACGGGAACGTTCA+AGG | - | Chr1:74421701-74421720 | MsG0180004173.01.T01:intron | 55.0% | |
| ! | AGACGGATTCACTCTGCTGC+AGG | + | Chr1:74421892-74421911 | None:intergenic | 55.0% |
| !! | AAGGTTGTCGGTGACGGAGA+CGG | + | Chr1:74421909-74421928 | None:intergenic | 55.0% |
| ACTCTGACTTCCTCCACGGC+GGG | + | Chr1:74421842-74421861 | None:intergenic | 60.0% | |
| ATCACTCTCCGACGCAACGC+CGG | + | Chr1:74421958-74421977 | None:intergenic | 60.0% | |
| CCGGCGAGTTTCACTATCGC+CGG | + | Chr1:74420605-74420624 | None:intergenic | 60.0% | |
| CCGGCGATAGTGAAACTCGC+CGG | - | Chr1:74420602-74420621 | MsG0180004173.01.T01:three_prime_UTR | 60.0% | |
| CGGATTCACTCTGCTGCAGG+AGG | + | Chr1:74421889-74421908 | None:intergenic | 60.0% | |
| CGGTTCATCGGACTTGTCGC+CGG | + | Chr1:74420993-74421012 | None:intergenic | 60.0% | |
| CTCTCCGCAACACTCGCACA+AGG | + | Chr1:74421333-74421352 | None:intergenic | 60.0% | |
| GAACACGTGGCGGCGATGAT+TGG | + | Chr1:74420684-74420703 | None:intergenic | 60.0% | |
| GATCGTCACCGTCGTATCGG+AGG | - | Chr1:74421779-74421798 | MsG0180004173.01.T01:CDS | 60.0% | |
| GGTTCATCGGACTTGTCGCC+GGG | + | Chr1:74420992-74421011 | None:intergenic | 60.0% | |
| TTTCGCCGCCTCCGATACGA+CGG | + | Chr1:74421790-74421809 | None:intergenic | 60.0% | |
| AAGGAATGCCTGTCCCGCCG+TGG | - | Chr1:74421826-74421845 | MsG0180004173.01.T01:CDS | 65.0% | |
| CACGTCGGCAACACCACCGT+CGG | + | Chr1:74422062-74422081 | None:intergenic | 65.0% | |
| CGATGCCGGTGACGCACTCA+AGG | - | Chr1:74421198-74421217 | MsG0180004173.01.T01:CDS | 65.0% | |
| CGTCACCGTCGTATCGGAGG+CGG | - | Chr1:74421782-74421801 | MsG0180004173.01.T01:CDS | 65.0% | |
| GCCGGCGAAGTTCCACTTCC+CGG | - | Chr1:74420971-74420990 | MsG0180004173.01.T01:CDS | 65.0% | |
| GCCGGGAAGTGGAACTTCGC+CGG | + | Chr1:74420975-74420994 | None:intergenic | 65.0% | |
| GGAACTTCGCCGGCGACGAT+AGG | + | Chr1:74420965-74420984 | None:intergenic | 65.0% | |
| GGATCTGACCGGCGTTGCGT+CGG | - | Chr1:74421947-74421966 | MsG0180004173.01.T01:CDS | 65.0% | |
| TCGGACTTGTCGCCGGGAAG+TGG | + | Chr1:74420986-74421005 | None:intergenic | 65.0% | |
| GAATGCCTGTCCCGCCGTGG+AGG | - | Chr1:74421829-74421848 | MsG0180004173.01.T01:CDS | 70.0% | |
| GACTTCCTCCACGGCGGGAC+AGG | + | Chr1:74421837-74421856 | None:intergenic | 70.0% | |
| !! | CGACGGTGGTGTTGCCGACG+TGG | - | Chr1:74422060-74422079 | MsG0180004173.01.T01:CDS | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| Chr1 | gene | 74420527 | 74422418 | 74420527 | ID=MsG0180004173.01;Name=MsG0180004173.01 |
| Chr1 | mRNA | 74420527 | 74422418 | 74420527 | ID=MsG0180004173.01.T01;Parent=MsG0180004173.01;Name=MsG0180004173.01.T01;_AED=0.12;_eAED=0.12;_QI=267|1|1|1|1|1|3|261|385 |
| Chr1 | exon | 74420527 | 74421326 | 74420527 | ID=MsG0180004173.01.T01:exon:5606;Parent=MsG0180004173.01.T01 |
| Chr1 | exon | 74421432 | 74421624 | 74421432 | ID=MsG0180004173.01.T01:exon:5605;Parent=MsG0180004173.01.T01 |
| Chr1 | exon | 74421726 | 74422418 | 74421726 | ID=MsG0180004173.01.T01:exon:5604;Parent=MsG0180004173.01.T01 |
| Chr1 | five_prime_UTR | 74422152 | 74422418 | 74422152 | ID=MsG0180004173.01.T01:five_prime_utr;Parent=MsG0180004173.01.T01 |
| Chr1 | CDS | 74421726 | 74422151 | 74421726 | ID=MsG0180004173.01.T01:cds;Parent=MsG0180004173.01.T01 |
| Chr1 | CDS | 74421432 | 74421624 | 74421432 | ID=MsG0180004173.01.T01:cds;Parent=MsG0180004173.01.T01 |
| Chr1 | CDS | 74420788 | 74421326 | 74420788 | ID=MsG0180004173.01.T01:cds;Parent=MsG0180004173.01.T01 |
| Chr1 | three_prime_UTR | 74420527 | 74420787 | 74420527 | ID=MsG0180004173.01.T01:three_prime_utr;Parent=MsG0180004173.01.T01 |
| Gene Sequence |
| Protein sequence |
