AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0180004378.01

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0180004378.01.T01 MTR_1g078040 67.931 290 60 5 65 328 101 383 1.25e-96 307
MsG0180004378.01.T01 MTR_1g078040 67.247 287 57 6 70 328 114 391 1.43e-93 299
MsG0180004378.01.T01 MTR_1g078050 50.719 278 83 6 65 328 108 345 3.92e-58 197
MsG0180004378.01.T01 MTR_1g078050 50.719 278 83 6 65 328 108 345 1.04e-56 196
MsG0180004378.01.T01 MTR_1g078050 93.056 72 5 0 257 328 640 711 1.85e-36 139
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0180004378.01.T01 AT1G10390 50.160 313 83 11 65 328 106 394 8.27e-59 204
MsG0180004378.01.T01 AT1G10390 40.741 162 29 6 136 237 56 210 2.51e-11 65.1
MsG0180004378.01.T01 AT1G10390 50.160 313 83 11 65 328 106 394 8.27e-59 204
MsG0180004378.01.T01 AT1G10390 40.741 162 29 6 136 237 56 210 2.51e-11 65.1
MsG0180004378.01.T01 AT1G10390 50.160 313 83 11 65 328 106 394 8.27e-59 204
MsG0180004378.01.T01 AT1G10390 40.741 162 29 6 136 237 56 210 2.51e-11 65.1
MsG0180004378.01.T01 AT1G59660 42.761 297 133 7 59 328 98 384 3.24e-44 162
MsG0180004378.01.T01 AT1G59660 47.531 162 37 7 120 235 59 218 2.76e-18 86.3
MsG0180004378.01.T01 AT1G59660 42.761 297 133 7 59 328 98 384 3.32e-44 162
MsG0180004378.01.T01 AT1G59660 47.531 162 37 7 120 235 59 218 2.81e-18 86.3
MsG0180004378.01.T01 AT1G59660 42.761 297 133 7 59 328 98 384 3.32e-44 162
MsG0180004378.01.T01 AT1G59660 47.531 162 37 7 120 235 59 218 2.81e-18 86.3

Find 117 sgRNAs with CRISPR-Local

Find 325 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GCATTTGGAAGCAGCATATT+TGG 0.195207 1:-77211255 MsG0180004378.01.T01:CDS
GCAACCAGCACCCCAGCTTT+TGG 0.199572 1:-77211067 MsG0180004378.01.T01:CDS
CATCAAGCACGCCTGCATTT+GGG 0.234663 1:-77210907 MsG0180004378.01.T01:CDS
GTGCTGGTTGCACCGAAAGC+TGG 0.262885 1:+77211079 None:intergenic
GTGCTGGTTGCCCCAAAAGC+TGG 0.268797 1:+77211055 None:intergenic
GCTTCAAGCAGTCCTGTATT+TGG 0.277522 1:-77210932 MsG0180004378.01.T01:CDS
TCATCAAGCACGCCTGCATT+TGG 0.282285 1:-77210908 MsG0180004378.01.T01:CDS
TTTGGTCAGAAGCCTTCTTT+TGG 0.286295 1:-77211373 MsG0180004378.01.T01:CDS
GCACCCAGCGCCCCAGCTTT+CGG 0.287640 1:-77211091 MsG0180004378.01.T01:CDS
TGCTGGTTGCCCCAAAAGCT+GGG 0.297700 1:+77211056 None:intergenic
TGCTGGTTGCACCGAAAGCT+GGG 0.302073 1:+77211080 None:intergenic
GGTATTGGGCAGTCAGGATT+TGG 0.303970 1:-77210604 MsG0180004378.01.T01:CDS
GGCCTCCAGCTCTCCTGCTT+TGG 0.308916 1:-77210885 MsG0180004378.01.T01:CDS
GCAACCAGCACCCCTGCATT+TGG 0.309240 1:-77211043 MsG0180004378.01.T01:CDS
GCACCCAGCACCCCTGCTTT+TGG 0.309345 1:-77211115 MsG0180004378.01.T01:CDS
ACCACTGTGTTTGGTGGTGG+TGG 0.317969 1:-77210965 MsG0180004378.01.T01:CDS
GCAACCAGCACCCCTGCTTT+TGG 0.319005 1:-77211139 MsG0180004378.01.T01:CDS
TGGAAAGTTGTAAGCATGTT+TGG 0.348227 1:-77213112 MsG0180004378.01.T01:CDS
TGCACCGAAAGCTGGGGCGC+TGG 0.349468 1:+77211087 None:intergenic
TGCACCAAAAGCAGGGGTGC+TGG 0.350019 1:+77211111 None:intergenic
TCAACTTCAACCTCAGCTTT+TGG 0.352834 1:-77211019 MsG0180004378.01.T01:CDS
GTCAGGATTTGGAGGTCAAC+GGG 0.354139 1:-77210593 MsG0180004378.01.T01:CDS
TCGACAGGCACTCCTGCATT+TGG 0.377919 1:-77211211 MsG0180004378.01.T01:CDS
AGGACTATCAATGGGGATAA+AGG 0.381695 1:-77210438 None:intergenic
GCATTTGGAAGTACTGGTAT+TGG 0.384090 1:-77210619 MsG0180004378.01.T01:CDS
CTCTGGACAGGCTGCAAAGT+TGG 0.388026 1:-77210518 MsG0180004378.01.T01:CDS
GCGCTGGGTGCACCAAAAGC+AGG 0.389384 1:+77211103 None:intergenic
GTGCTGGGTGCACCAAAAGC+AGG 0.391403 1:+77211127 None:intergenic
CATTTGGAAGTACTGGTATT+GGG 0.392197 1:-77210618 MsG0180004378.01.T01:CDS
CACTGTGTTTGGTGGTGGTG+GGG 0.397049 1:-77210963 MsG0180004378.01.T01:CDS
CAACCATCACAACCAGCATT+TGG 0.399302 1:-77211302 MsG0180004378.01.T01:CDS
TGTTGTTGTTGATTGCAGTT+GGG 0.406468 1:-77213158 MsG0180004378.01.T01:CDS
CAGACTCCCACTCAAGCATT+TGG 0.409112 1:-77210634 MsG0180004378.01.T01:CDS
CAACAGTCGCAATCAGCATT+TGG 0.415576 1:-77211270 MsG0180004378.01.T01:CDS
GCACCGAAAGCTGGGGCGCT+GGG 0.418196 1:+77211088 None:intergenic
ATTGCAGTTGGGGATTATCT+AGG 0.420769 1:-77213147 MsG0180004378.01.T01:CDS
CAAATGCTGGTTGTGATGGT+TGG 0.422181 1:+77211303 None:intergenic
GCACCAAAAGCAGGGGTGCT+GGG 0.422344 1:+77211112 None:intergenic
TGGTTCCTCAACACCACATT+TGG 0.424957 1:-77211235 MsG0180004378.01.T01:CDS
CCACTGTGTTTGGTGGTGGT+GGG 0.427431 1:-77210964 MsG0180004378.01.T01:CDS
TGCCCCAAAAGCTGGGGTGC+TGG 0.432347 1:+77211063 None:intergenic
GCTACGAGCACTCCTGCATT+TGG 0.435030 1:-77211187 MsG0180004378.01.T01:CDS
GCTACGAGCACCCCTGCGTT+TGG 0.438383 1:-77211163 MsG0180004378.01.T01:CDS
GAGCTGGAGGCCCCAAATGC+AGG 0.441051 1:+77210896 None:intergenic
ACTGTGTTTGGTGGTGGTGG+GGG 0.444013 1:-77210962 MsG0180004378.01.T01:CDS
TGCACCAAAAGCAGGGGTGC+TGG 0.445260 1:+77211135 None:intergenic
TTTGGTGCTTCTAGTGCCCC+AGG 0.449010 1:-77210867 MsG0180004378.01.T01:CDS
AAGCACCAAAGCAGGAGAGC+TGG 0.460732 1:+77210880 None:intergenic
AAATGCTGGTTGTGATGGTT+GGG 0.460765 1:+77211304 None:intergenic
TGCTGGTTGCACCAAACGCA+GGG 0.461264 1:+77211152 None:intergenic
GAAGCAGATAGTGGCACCTC+TGG 0.465746 1:-77210535 MsG0180004378.01.T01:CDS
CTTCCAAATGCTGGTTGTGA+TGG 0.465773 1:+77211299 None:intergenic
AGTACTGGTATTGGGCAGTC+AGG 0.469117 1:-77210610 MsG0180004378.01.T01:CDS
AACACCACATTTGGTTCGAC+AGG 0.472867 1:-77211226 MsG0180004378.01.T01:CDS
CGCTGGGTGCACCAAAAGCA+GGG 0.478449 1:+77211104 None:intergenic
ACTCAAGCATTTGGAAGTAC+TGG 0.489144 1:-77210625 MsG0180004378.01.T01:CDS
AAAGCCACGAGGAGCTAAGA+TGG 0.492465 1:-77210462 MsG0180004378.01.T01:CDS
TGGTTGGGTGGCACTTCAAA+TGG 0.497551 1:+77211319 None:intergenic
TGCTGGGTGCACCAAAAGCA+GGG 0.498893 1:+77211128 None:intergenic
ATCAAGCACGCCTGCATTTG+GGG 0.499047 1:-77210906 MsG0180004378.01.T01:CDS
AGATAGTGGCACCTCTGGAC+AGG 0.505057 1:-77210530 MsG0180004378.01.T01:CDS
AAGATGGGAGGACTATCAAT+GGG 0.507100 1:-77210446 MsG0180004378.01.T01:CDS
TTGGTGTTACTTCCAAATGC+TGG 0.507318 1:+77211290 None:intergenic
TTTATCTTTGTAAACAGGCA+TGG 0.510768 1:+77210483 None:intergenic
CAAATGCTGATTGCGACTGT+TGG 0.513410 1:+77211271 None:intergenic
ATGTCAAATACCACTGTGTT+TGG 0.514225 1:-77210974 MsG0180004378.01.T01:CDS
TAAGATGGGAGGACTATCAA+TGG 0.515725 1:-77210447 MsG0180004378.01.T01:CDS
ATGTTGTTGTTGATTGCAGT+TGG 0.517816 1:-77213159 MsG0180004378.01.T01:CDS
GAGCCAAAACCTCCAAAAGA+AGG 0.520720 1:+77211361 None:intergenic
GGCACTAGAAGCACCAAAGC+AGG 0.524803 1:+77210872 None:intergenic
GTTGTTGTTGATTGCAGTTG+GGG 0.525335 1:-77213157 MsG0180004378.01.T01:CDS
TGGAACCAAAACTAAAACCT+GGG 0.526628 1:+77210850 None:intergenic
GTGCTGGTTGCACCAAACGC+AGG 0.529302 1:+77211151 None:intergenic
TGAACCAAATGCAGGGGTGC+TGG 0.532978 1:+77211039 None:intergenic
GCTACAGTGGAAGCAGATAG+TGG 0.534008 1:-77210544 MsG0180004378.01.T01:CDS
GTTGAAGTTGAACCAAATGC+AGG 0.538366 1:+77211031 None:intergenic
AGTCAGGATTTGGAGGTCAA+CGG 0.542037 1:-77210594 MsG0180004378.01.T01:CDS
TCAAATGGACTTGTTTGAGT+AGG 0.544173 1:+77211334 None:intergenic
CACCAAAGCAGGAGAGCTGG+AGG 0.544225 1:+77210883 None:intergenic
GTGCTCGTAGCACCAAATGC+AGG 0.553367 1:+77211199 None:intergenic
GCTGGTTGCCCCAAAAGCTG+GGG 0.556557 1:+77211057 None:intergenic
GTGCTTGATGAACCAAATAC+AGG 0.557053 1:+77210920 None:intergenic
AATACCACTGTGTTTGGTGG+TGG 0.561037 1:-77210968 MsG0180004378.01.T01:CDS
GTGGAACCAAAACTAAAACC+TGG 0.562126 1:+77210849 None:intergenic
TGCTGGTTGTGATGGTTGGG+TGG 0.568361 1:+77211307 None:intergenic
TATATCAAATTACGCAAGAA+CGG 0.581499 1:+77213181 None:intergenic
GTGCTCGTAGCACCAAATGC+AGG 0.588399 1:+77211175 None:intergenic
TTGAAGTTGAACCAAATGCA+GGG 0.592879 1:+77211032 None:intergenic
GAACAAGATACCACTGACTT+CGG 0.596025 1:-77215168 MsG0180004378.01.T01:CDS
ATTGGGCAGTCAGGATTTGG+AGG 0.596861 1:-77210601 MsG0180004378.01.T01:CDS
GCTGGGTGCACCAAAAGCAG+GGG 0.601140 1:+77211105 None:intergenic
GAACTAGACTGACTAAAAGC+CGG 0.602042 1:+77210822 None:intergenic
AAGCCACGAGGAGCTAAGAT+GGG 0.606234 1:-77210461 MsG0180004378.01.T01:CDS
GCTGGTTGCACCGAAAGCTG+GGG 0.607847 1:+77211081 None:intergenic
GCTGGGTGCACCAAAAGCAG+GGG 0.608639 1:+77211129 None:intergenic
GGATTTGGAGGTCAACGGGG+TGG 0.608669 1:-77210589 MsG0180004378.01.T01:CDS
AGTACTTCCAAATGCTTGAG+TGG 0.609773 1:+77210627 None:intergenic
CTGACTAAAAGCCGGAGTGG+TGG 0.612070 1:+77210830 None:intergenic
TCAAATACCACTGTGTTTGG+TGG 0.614427 1:-77210971 MsG0180004378.01.T01:CDS
CCCTGTGTTACCAAAAGCTG+AGG 0.618001 1:+77211009 None:intergenic
AGCTAGTTACTCAGCTACAG+TGG 0.621042 1:-77210557 MsG0180004378.01.T01:CDS
CTCTCTAGAACCGAAGTCAG+TGG 0.629778 1:+77215158 None:intergenic
GTACTTCCAAATGCTTGAGT+GGG 0.631080 1:+77210628 None:intergenic
GGAGATAAGGGAAATGGCAA+AGG 0.633277 1:-77215190 None:intergenic
CAACTTTGCAGCCTGTCCAG+AGG 0.635625 1:+77210519 None:intergenic
GCTGGTTGCACCAAACGCAG+GGG 0.659543 1:+77211153 None:intergenic
TGAAGTTGAACCAAATGCAG+GGG 0.674521 1:+77211033 None:intergenic
CCTCCCATCTTAGCTCCTCG+TGG 0.675080 1:+77210458 None:intergenic
AGTGCCTGTCGAACCAAATG+TGG 0.675901 1:+77211222 None:intergenic
AGACTGACTAAAAGCCGGAG+TGG 0.677239 1:+77210827 None:intergenic
CCACGAGGAGCTAAGATGGG+AGG 0.677956 1:-77210458 MsG0180004378.01.T01:CDS
TCAGGATTTGGAGGTCAACG+GGG 0.688130 1:-77210592 MsG0180004378.01.T01:CDS
GGAACCAAAACTAAAACCTG+GGG 0.698294 1:+77210851 None:intergenic
TCGAACCAAATGTGGTGTTG+AGG 0.708177 1:+77211230 None:intergenic
CCCACCACCACCAAACACAG+TGG 0.732038 1:+77210964 None:intergenic
AGATGGGAGGACTATCAATG+GGG 0.768735 1:-77210445 MsG0180004378.01.T01:CDS
TTACAAAGATAAAAGCCACG+AGG 0.809043 1:-77210473 MsG0180004378.01.T01:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATTATTAATTATTATTTTTA+GGG - Chr1:77212599-77212618 MsG0180004378.01.T01:intron 0.0%
!! CTAATATAAAAACAATAAAA+AGG + Chr1:77214163-77214182 None:intergenic 10.0%
!!! AGTATTTATTGATTAATATA+TGG - Chr1:77212812-77212831 MsG0180004378.01.T01:intron 10.0%
!!! TAATAATTAATAAGGATTTT+GGG + Chr1:77211978-77211997 None:intergenic 10.0%
!!! TGAGTTTTTATTATTTAAAT+CGG + Chr1:77213225-77213244 None:intergenic 10.0%
!! AGGATAATAAAAAATAGATT+AGG + Chr1:77212558-77212577 None:intergenic 15.0%
!! ATAATTGAAAGAAAATGAAA+AGG + Chr1:77212290-77212309 None:intergenic 15.0%
!! ATAGGTTGTAATAATTAATA+AGG + Chr1:77211986-77212005 None:intergenic 15.0%
!! TAAACTTATAAGTATTTGAA+GGG - Chr1:77213390-77213409 MsG0180004378.01.T01:intron 15.0%
!! TCAATATAAATTCATTGAAA+CGG + Chr1:77210841-77210860 None:intergenic 15.0%
!! TGCTTAAAAAAAATAAAATG+AGG - Chr1:77210672-77210691 MsG0180004378.01.T01:intron 15.0%
!! TTAAACTTATAAGTATTTGA+AGG - Chr1:77213389-77213408 MsG0180004378.01.T01:intron 15.0%
!!! AATCACATATTTTTTCAAAA+AGG - Chr1:77211708-77211727 MsG0180004378.01.T01:intron 15.0%
!!! GAGTTTTTATTATTTAAATC+GGG + Chr1:77213224-77213243 None:intergenic 15.0%
!!! GTAATAATTAATAAGGATTT+TGG + Chr1:77211979-77211998 None:intergenic 15.0%
!! AAACAAAAAACTGCAAATTA+AGG + Chr1:77212578-77212597 None:intergenic 20.0%
!! CATTATTAGATAATGAAAGA+AGG + Chr1:77214108-77214127 None:intergenic 20.0%
!! CTTCTTTCATTATCTAATAA+TGG - Chr1:77214106-77214125 MsG0180004378.01.T01:intron 20.0%
!! GTTGATTAATTATTGGATTA+TGG - Chr1:77212621-77212640 MsG0180004378.01.T01:intron 20.0%
!! TAGATAAATGATAAAGTTAG+TGG - Chr1:77212654-77212673 MsG0180004378.01.T01:intron 20.0%
!! TTTACGTCAAAACTTAAAAT+AGG + Chr1:77212004-77212023 None:intergenic 20.0%
!!! GTATAAACAGAATCATATTT+TGG - Chr1:77213279-77213298 MsG0180004378.01.T01:intron 20.0%
!!! TAAAGTCTCTAAAAACAAAA+AGG - Chr1:77211278-77211297 MsG0180004378.01.T01:CDS 20.0%
!!! TATTTTCATTCTTTATCATG+AGG - Chr1:77210643-77210662 MsG0180004378.01.T01:intron 20.0%
!!! TTGTGTAATTTTAAATTCGT+AGG + Chr1:77213453-77213472 None:intergenic 20.0%
!!! TTTTAGGGTTGATTAATTAT+TGG - Chr1:77212614-77212633 MsG0180004378.01.T01:intron 20.0%
!!! TTTTTCATATTTTCTTATGC+AGG - Chr1:77214957-77214976 MsG0180004378.01.T01:intron 20.0%
! AGAGAAAAGTAAAGTTACAA+CGG - Chr1:77211628-77211647 MsG0180004378.01.T01:intron 25.0%
! ATAATGACAACAACATAGAT+TGG + Chr1:77212769-77212788 None:intergenic 25.0%
! ATACAATTCAACGATTAACA+GGG + Chr1:77213323-77213342 None:intergenic 25.0%
! ATGGTAATCATTAACATCTT+TGG - Chr1:77214125-77214144 MsG0180004378.01.T01:intron 25.0%
! ATGTACTCTATCAATTTGAA+TGG + Chr1:77211241-77211260 None:intergenic 25.0%
! TATACAATTCAACGATTAAC+AGG + Chr1:77213324-77213343 None:intergenic 25.0%
! TATATCAAATTACGCAAGAA+CGG + Chr1:77212440-77212459 None:intergenic 25.0%
! TGAGCAAGACAATTAATAAA+TGG + Chr1:77213188-77213207 None:intergenic 25.0%
! TTGAACATAGTCATATTTGT+AGG + Chr1:77211365-77211384 None:intergenic 25.0%
! TTTATACTCTTAATTGCTGA+GGG + Chr1:77213266-77213285 None:intergenic 25.0%
! TTTATTAATTGTCTTGCTCA+TGG - Chr1:77213188-77213207 MsG0180004378.01.T01:CDS 25.0%
!! AGATTTTATGCAAAATCAAG+GGG + Chr1:77213599-77213618 None:intergenic 25.0%
!! ATCCGAAAATATGAGTATTT+TGG + Chr1:77211392-77211411 None:intergenic 25.0%
!! CACCAAAATACTCATATTTT+CGG - Chr1:77211387-77211406 MsG0180004378.01.T01:CDS 25.0%
!! GAAAATTTTTAACAGCTTTC+GGG - Chr1:77212834-77212853 MsG0180004378.01.T01:intron 25.0%
!! GAGATTTTATGCAAAATCAA+GGG + Chr1:77213600-77213619 None:intergenic 25.0%
!! GGAAAATTTTTAACAGCTTT+CGG - Chr1:77212833-77212852 MsG0180004378.01.T01:intron 25.0%
!! TATCTAGGTTTTACTCTATT+TGG - Chr1:77212486-77212505 MsG0180004378.01.T01:intron 25.0%
!!! AAAATCTCGATTTTAACGAT+TGG - Chr1:77213612-77213631 MsG0180004378.01.T01:intron 25.0%
!!! ATTTGCACCGTATATTTTTT+TGG - Chr1:77210971-77210990 MsG0180004378.01.T01:CDS 25.0%
!!! GTAACTTTACTTTTCTCTTT+TGG + Chr1:77211626-77211645 None:intergenic 25.0%
!!! TAAACAGAATCATATTTTGG+TGG - Chr1:77213282-77213301 MsG0180004378.01.T01:intron 25.0%
!!! TTTTGAAACCAGTTTATTGT+TGG - Chr1:77213667-77213686 MsG0180004378.01.T01:intron 25.0%
AAAAGCTTACAGTGAAATTG+GGG + Chr1:77212263-77212282 None:intergenic 30.0%
AACATTCGAATTGTTATGAC+CGG - Chr1:77210931-77210950 MsG0180004378.01.T01:CDS 30.0%
AAGGAATCATATCCATAAAC+AGG + Chr1:77213901-77213920 None:intergenic 30.0%
AATCAGTAGACTATCTTCAT+TGG - Chr1:77213641-77213660 MsG0180004378.01.T01:intron 30.0%
AATCTGAATCAGATAAACAC+CGG - Chr1:77211474-77211493 MsG0180004378.01.T01:intron 30.0%
AGTATTTGAAGGGTGATTTA+AGG - Chr1:77213400-77213419 MsG0180004378.01.T01:intron 30.0%
ATCTCAGTTATGTAGTCTTT+AGG + Chr1:77214062-77214081 None:intergenic 30.0%
ATTGAAACGGTCTAACTAAA+AGG + Chr1:77210828-77210847 None:intergenic 30.0%
ATTTCATGTGAATTTGTGTG+TGG - Chr1:77213863-77213882 MsG0180004378.01.T01:intron 30.0%
CAAGTACTTCAAGTGATTTA+AGG - Chr1:77213470-77213489 MsG0180004378.01.T01:intron 30.0%
CATAAAAATATGCAAAGTCC+GGG + Chr1:77211015-77211034 None:intergenic 30.0%
GAAAAGCTTACAGTGAAATT+GGG + Chr1:77212264-77212283 None:intergenic 30.0%
GATCCTAAAAAGAGAAAAGT+TGG + Chr1:77214218-77214237 None:intergenic 30.0%
GATTAATCCGTTATCATCTT+AGG - Chr1:77212393-77212412 MsG0180004378.01.T01:intron 30.0%
GCATAAAAATATGCAAAGTC+CGG + Chr1:77211016-77211035 None:intergenic 30.0%
GTCTAACTAAAAGGTTAGAT+GGG + Chr1:77210819-77210838 None:intergenic 30.0%
GTTGTGACTTAAAAAAGAAG+CGG - Chr1:77212047-77212066 MsG0180004378.01.T01:intron 30.0%
GTTTATACTCTTAATTGCTG+AGG + Chr1:77213267-77213286 None:intergenic 30.0%
TGAAAAGCTTACAGTGAAAT+TGG + Chr1:77212265-77212284 None:intergenic 30.0%
TGACATAACCAACAATAAAC+TGG + Chr1:77213678-77213697 None:intergenic 30.0%
TTTATCTTTGTAAACAGGCA+TGG + Chr1:77215138-77215157 None:intergenic 30.0%
TTTCATGTGAATTTGTGTGT+GGG - Chr1:77213864-77213883 MsG0180004378.01.T01:intron 30.0%
! AATAACAGTTTTCATACACG+TGG - Chr1:77213730-77213749 MsG0180004378.01.T01:intron 30.0%
! ATATTTTCCTTGAGCTTCAT+TGG + Chr1:77210567-77210586 None:intergenic 30.0%
! CGAGATTTTATGCAAAATCA+AGG + Chr1:77213601-77213620 None:intergenic 30.0%
! GATCCAACTTTTCTCTTTTT+AGG - Chr1:77214212-77214231 MsG0180004378.01.T01:intron 30.0%
! TGGCTTTTATCTTTGTAAAC+AGG + Chr1:77215143-77215162 None:intergenic 30.0%
! TTTGATTTCTCATCATAGTC+CGG + Chr1:77211496-77211515 None:intergenic 30.0%
!! ACTTTAGGATTCATAAGAAG+TGG - Chr1:77210515-77210534 MsG0180004378.01.T01:CDS 30.0%
!! CGAAAATATGAGTATTTTGG+TGG + Chr1:77211389-77211408 None:intergenic 30.0%
!!! GCTTCTTTTTTAAGTCACAA+CGG + Chr1:77212048-77212067 None:intergenic 30.0%
!!! TTTTTAGGATCATCAGTGTT+TGG - Chr1:77214227-77214246 MsG0180004378.01.T01:intron 30.0%
AAAGTAAAGTTACAACGGCT+AGG - Chr1:77211633-77211652 MsG0180004378.01.T01:intron 35.0%
AACTTGACCTCCAAAATTAG+AGG + Chr1:77214857-77214876 None:intergenic 35.0%
AGCTAGACCTAAGATGATAA+CGG + Chr1:77212403-77212422 None:intergenic 35.0%
AGTTATAAGAGTTAAGTCCC+CGG + Chr1:77212702-77212721 None:intergenic 35.0%
ATGTCAAATACCACTGTGTT+TGG - Chr1:77214644-77214663 MsG0180004378.01.T01:intron 35.0%
CAAGATGTAAGAGGAACTTT+AGG - Chr1:77210500-77210519 MsG0180004378.01.T01:CDS 35.0%
GCCACCACCAAAAAAATATA+CGG + Chr1:77210981-77211000 None:intergenic 35.0%
GGGAAGTAAATCGTAAATCA+TGG + Chr1:77213579-77213598 None:intergenic 35.0%
GGTCTAACTAAAAGGTTAGA+TGG + Chr1:77210820-77210839 None:intergenic 35.0%
GTGTCTATCTATCCTGTTTA+TGG - Chr1:77213886-77213905 MsG0180004378.01.T01:intron 35.0%
GTTAGTGGTTGTATAGTTAC+CGG - Chr1:77212669-77212688 MsG0180004378.01.T01:intron 35.0%
TCCGTTTCTTCCAATACTTT+CGG - Chr1:77213034-77213053 MsG0180004378.01.T01:intron 35.0%
TGAGAACTTCAAGATGTAAG+AGG - Chr1:77210491-77210510 MsG0180004378.01.T01:CDS 35.0%
TGGAAAGTTGTAAGCATGTT+TGG - Chr1:77212506-77212525 MsG0180004378.01.T01:intron 35.0%
TGGAACCAAAACTAAAACCT+GGG + Chr1:77214771-77214790 None:intergenic 35.0%
TGTTCTGTAAGTGTTTCACA+TGG + Chr1:77213959-77213978 None:intergenic 35.0%
TTACAAAGATAAAAGCCACG+AGG - Chr1:77215145-77215164 MsG0180004378.01.T01:CDS 35.0%
TTAGGATTCATAAGAAGTGG+AGG - Chr1:77210518-77210537 MsG0180004378.01.T01:CDS 35.0%
TTAGTGGTTGTATAGTTACC+GGG - Chr1:77212670-77212689 MsG0180004378.01.T01:intron 35.0%
TTCGTTCTTTAGCGTGAAAT+CGG + Chr1:77212091-77212110 None:intergenic 35.0%
TTGAAGTTGAACCAAATGCA+GGG + Chr1:77214589-77214608 None:intergenic 35.0%
TTGTAGAGTCTTTGTAGAGT+AGG - Chr1:77210733-77210752 MsG0180004378.01.T01:intron 35.0%
! ATGTTGTTGTTGATTGCAGT+TGG - Chr1:77212459-77212478 MsG0180004378.01.T01:intron 35.0%
! CAAATCCTCCATAAAAGCAT+TGG + Chr1:77213775-77213794 None:intergenic 35.0%
! GCAAATAAGTTTTACGCCAT+CGG + Chr1:77210957-77210976 None:intergenic 35.0%
! TCAAATGGACTTGTTTGAGT+AGG + Chr1:77214287-77214306 None:intergenic 35.0%
! TGTTGTTGTTGATTGCAGTT+GGG - Chr1:77212460-77212479 MsG0180004378.01.T01:intron 35.0%
!! CATTTGGAAGTACTGGTATT+GGG - Chr1:77215000-77215019 MsG0180004378.01.T01:intron 35.0%
!!! ACCGTATATTTTTTTGGTGG+TGG - Chr1:77210977-77210996 MsG0180004378.01.T01:CDS 35.0%
!!! CATATTTTGGTGGAAAAGAC+TGG - Chr1:77213292-77213311 MsG0180004378.01.T01:intron 35.0%
!!! TATATTTTTTTGGTGGTGGC+CGG - Chr1:77210981-77211000 MsG0180004378.01.T01:CDS 35.0%
!!! TGCACCGTATATTTTTTTGG+TGG - Chr1:77210974-77210993 MsG0180004378.01.T01:CDS 35.0%
!!! TTTTTTGCTAGGCATGATTG+TGG - Chr1:77210602-77210621 MsG0180004378.01.T01:CDS 35.0%
AAGATGGGAGGACTATCAAT+GGG - Chr1:77215172-77215191 MsG0180004378.01.T01:CDS 40.0%
ACGAAGAGCAAAGTAGATGT+AGG + Chr1:77210784-77210803 None:intergenic 40.0%
AGATCTGCGAGAAGAGATTA+GGG + Chr1:77212235-77212254 None:intergenic 40.0%
AGCTTCATTGGAGTTTGGTT+AGG + Chr1:77210555-77210574 None:intergenic 40.0%
AGTACTTCCAAATGCTTGAG+TGG + Chr1:77214994-77215013 None:intergenic 40.0%
ATTGCAGTTGGGGATTATCT+AGG - Chr1:77212471-77212490 MsG0180004378.01.T01:intron 40.0%
CAAGGAAAATATTCACGCCA+TGG - Chr1:77210575-77210594 MsG0180004378.01.T01:CDS 40.0%
GAACTAGACTGACTAAAAGC+CGG + Chr1:77214799-77214818 None:intergenic 40.0%
GATGACGAATTACCAAAAGC+CGG + Chr1:77213117-77213136 None:intergenic 40.0%
GCATTTGGAAGCAGCATATT+TGG - Chr1:77214363-77214382 MsG0180004378.01.T01:intron 40.0%
GGAACCAAAACTAAAACCTG+GGG + Chr1:77214770-77214789 None:intergenic 40.0%
GTACTTCCAAATGCTTGAGT+GGG + Chr1:77214993-77215012 None:intergenic 40.0%
GTGCTTGATGAACCAAATAC+AGG + Chr1:77214701-77214720 None:intergenic 40.0%
GTGGAACCAAAACTAAAACC+TGG + Chr1:77214772-77214791 None:intergenic 40.0%
GTTGAAGTTGAACCAAATGC+AGG + Chr1:77214590-77214609 None:intergenic 40.0%
TAAGATGGGAGGACTATCAA+TGG - Chr1:77215171-77215190 MsG0180004378.01.T01:CDS 40.0%
TAAGTGTTTCACATGGAGGT+GGG + Chr1:77213952-77213971 None:intergenic 40.0%
TAATTCGTCATCGTCATTGG+TGG - Chr1:77213125-77213144 MsG0180004378.01.T01:CDS 40.0%
TAGATCTGCGAGAAGAGATT+AGG + Chr1:77212236-77212255 None:intergenic 40.0%
TCAAATACCACTGTGTTTGG+TGG - Chr1:77214647-77214666 MsG0180004378.01.T01:intron 40.0%
TCTGTAAGTGTTTCACATGG+AGG + Chr1:77213956-77213975 None:intergenic 40.0%
TGAAGTTGAACCAAATGCAG+GGG + Chr1:77214588-77214607 None:intergenic 40.0%
TGGTAATTCGTCATCGTCAT+TGG - Chr1:77213122-77213141 MsG0180004378.01.T01:CDS 40.0%
! AAATGCTGGTTGTGATGGTT+GGG + Chr1:77214317-77214336 None:intergenic 40.0%
! AACATAGATTGGTCCCACAT+AGG + Chr1:77212758-77212777 None:intergenic 40.0%
! ACTCAAGCATTTGGAAGTAC+TGG - Chr1:77214993-77215012 MsG0180004378.01.T01:intron 40.0%
! AGCTTTTGGTACTTCAATGC+CGG - Chr1:77213072-77213091 MsG0180004378.01.T01:intron 40.0%
! AGTACGACCTCTAATTTTGG+AGG - Chr1:77214847-77214866 MsG0180004378.01.T01:intron 40.0%
! CTTAGCCAATGCTTTTATGG+AGG - Chr1:77213767-77213786 MsG0180004378.01.T01:intron 40.0%
! CTTTTGCACCTAAGCCATTT+GGG - Chr1:77212923-77212942 MsG0180004378.01.T01:intron 40.0%
! GTGCTTAGCCAATGCTTTTA+TGG - Chr1:77213764-77213783 MsG0180004378.01.T01:intron 40.0%
! GTTGTTGTTGATTGCAGTTG+GGG - Chr1:77212461-77212480 MsG0180004378.01.T01:intron 40.0%
! TCAACTTCAACCTCAGCTTT+TGG - Chr1:77214599-77214618 MsG0180004378.01.T01:intron 40.0%
! TTTGGTCAGAAGCCTTCTTT+TGG - Chr1:77214245-77214264 MsG0180004378.01.T01:intron 40.0%
!! AAGCCTTCTTTTGGAGGTTT+TGG - Chr1:77214254-77214273 MsG0180004378.01.T01:intron 40.0%
!! AGTCAGTCTAGTTCTGCATT+TGG - Chr1:77214805-77214824 MsG0180004378.01.T01:intron 40.0%
!! ATTGGTGGTAGGCTTTTCTA+TGG - Chr1:77213140-77213159 MsG0180004378.01.T01:CDS 40.0%
!! GAACAAGATACCACTGACTT+CGG - Chr1:77210450-77210469 MsG0180004378.01.T01:CDS 40.0%
!! GCATTTGGAAGTACTGGTAT+TGG - Chr1:77214999-77215018 MsG0180004378.01.T01:intron 40.0%
!! GCCGAAAGTATTGGAAGAAA+CGG + Chr1:77213038-77213057 None:intergenic 40.0%
!! TTGGTGTTACTTCCAAATGC+TGG + Chr1:77214331-77214350 None:intergenic 40.0%
!!! ATATTTTTTTGGTGGTGGCC+GGG - Chr1:77210982-77211001 MsG0180004378.01.T01:CDS 40.0%
AAGTGTTTCACATGGAGGTG+GGG + Chr1:77213951-77213970 None:intergenic 45.0%
AATGGAGTTGGACTCCCAAA+TGG + Chr1:77212940-77212959 None:intergenic 45.0%
ACAACGGCTAGGTTTGAGAA+TGG - Chr1:77211644-77211663 MsG0180004378.01.T01:intron 45.0%
AGATGGGAGGACTATCAATG+GGG - Chr1:77215173-77215192 MsG0180004378.01.T01:CDS 45.0%
AGCTAGTTACTCAGCTACAG+TGG - Chr1:77215061-77215080 MsG0180004378.01.T01:intron 45.0%
AGTCAGGATTTGGAGGTCAA+CGG - Chr1:77215024-77215043 MsG0180004378.01.T01:intron 45.0%
ATTGGAAGAAACGGAGACGA+TGG + Chr1:77213029-77213048 None:intergenic 45.0%
CAACAGTCGCAATCAGCATT+TGG - Chr1:77214348-77214367 MsG0180004378.01.T01:intron 45.0%
CAACCATCACAACCAGCATT+TGG - Chr1:77214316-77214335 MsG0180004378.01.T01:intron 45.0%
CATCGTGAACTTAGCTCAGT+TGG + Chr1:77211049-77211068 None:intergenic 45.0%
CCAAACTCCAATGAAGCTCA+AGG - Chr1:77210557-77210576 MsG0180004378.01.T01:CDS 45.0%
CCAAATGGCTTAGGTGCAAA+AGG + Chr1:77212925-77212944 None:intergenic 45.0%
CCTTGAGCTTCATTGGAGTT+TGG + Chr1:77210560-77210579 None:intergenic 45.0%
GAGCCAAAACCTCCAAAAGA+AGG + Chr1:77214260-77214279 None:intergenic 45.0%
GCTTCAAGCAGTCCTGTATT+TGG - Chr1:77214686-77214705 MsG0180004378.01.T01:intron 45.0%
GTAAGTGTTTCACATGGAGG+TGG + Chr1:77213953-77213972 None:intergenic 45.0%
GTACTTCAATGCCGGCATTT+GGG - Chr1:77213080-77213099 MsG0180004378.01.T01:intron 45.0%
TACTTCAATGCCGGCATTTG+GGG - Chr1:77213081-77213100 MsG0180004378.01.T01:intron 45.0%
TAGAGGTCGTACTCCCAAAT+GGG + Chr1:77214840-77214859 None:intergenic 45.0%
TATAGTTACCGGGATCGAAC+CGG - Chr1:77212680-77212699 MsG0180004378.01.T01:intron 45.0%
TCCATTTGGATCGCAGCAAA+CGG - Chr1:77212954-77212973 MsG0180004378.01.T01:intron 45.0%
TGGAGGTCAAGTTCTGCATT+TGG - Chr1:77214864-77214883 MsG0180004378.01.T01:intron 45.0%
TGGTTCCTCAACACCACATT+TGG - Chr1:77214383-77214402 MsG0180004378.01.T01:intron 45.0%
TTAGAGGTCGTACTCCCAAA+TGG + Chr1:77214841-77214860 None:intergenic 45.0%
TTTGAAGATGCCCCAAATGC+CGG + Chr1:77213094-77213113 None:intergenic 45.0%
TTTGGGAGTCCAACTCCATT+TGG - Chr1:77212940-77212959 MsG0180004378.01.T01:intron 45.0%
! AACACCACATTTGGTTCGAC+AGG - Chr1:77214392-77214411 MsG0180004378.01.T01:intron 45.0%
! AATACCACTGTGTTTGGTGG+TGG - Chr1:77214650-77214669 MsG0180004378.01.T01:intron 45.0%
! ATAAGTTTTACGCCATCGGC+CGG + Chr1:77210953-77210972 None:intergenic 45.0%
! CAAATGCTGATTGCGACTGT+TGG + Chr1:77214350-77214369 None:intergenic 45.0%
! CAAATGCTGGTTGTGATGGT+TGG + Chr1:77214318-77214337 None:intergenic 45.0%
! CATTTGGGGCATCTTCAAAC+CGG - Chr1:77213095-77213114 MsG0180004378.01.T01:intron 45.0%
! CCTTTTGCACCTAAGCCATT+TGG - Chr1:77212922-77212941 MsG0180004378.01.T01:intron 45.0%
! CTTCCAAATGCTGGTTGTGA+TGG + Chr1:77214322-77214341 None:intergenic 45.0%
! GCTTCATCATCTCCAGCTTT+TGG - Chr1:77213058-77213077 MsG0180004378.01.T01:intron 45.0%
! GGCATTGAAGTACCAAAAGC+TGG + Chr1:77213073-77213092 None:intergenic 45.0%
! TCGAACCAAATGTGGTGTTG+AGG + Chr1:77214391-77214410 None:intergenic 45.0%
!! ACCTCAGCTTTTGGTAACAC+AGG - Chr1:77214608-77214627 MsG0180004378.01.T01:intron 45.0%
!! CCTCAGCTTTTGGTAACACA+GGG - Chr1:77214609-77214628 MsG0180004378.01.T01:intron 45.0%
!! CTCAGCTTTTGGTAACACAG+GGG - Chr1:77214610-77214629 MsG0180004378.01.T01:intron 45.0%
!! GGGAGTACGACCTCTAATTT+TGG - Chr1:77214844-77214863 MsG0180004378.01.T01:intron 45.0%
!! TCAGCTTTTGGTAACACAGG+GGG - Chr1:77214611-77214630 MsG0180004378.01.T01:intron 45.0%
!! TGATGAAGCGCCGAAAGTAT+TGG + Chr1:77213047-77213066 None:intergenic 45.0%
!!! AGTGCCCCAGGTTTTAGTTT+TGG - Chr1:77214763-77214782 MsG0180004378.01.T01:intron 45.0%
!!! TAGTTTTGGTTCCACCACTC+CGG - Chr1:77214777-77214796 MsG0180004378.01.T01:intron 45.0%
!!! TATTTTTTTGGTGGTGGCCG+GGG - Chr1:77210983-77211002 MsG0180004378.01.T01:CDS 45.0%
!!! CATTATTAATTATTATTTTT+AGG - Chr1:77212598-77212617 MsG0180004378.01.T01:intron 5.0%
!!! TTTTTAAAATTTAAAACAAA+CGG + Chr1:77211108-77211127 None:intergenic 5.0%
AAAGCCACGAGGAGCTAAGA+TGG - Chr1:77215156-77215175 MsG0180004378.01.T01:CDS 50.0%
AAGCCACGAGGAGCTAAGAT+GGG - Chr1:77215157-77215176 MsG0180004378.01.T01:CDS 50.0%
AAGGGGGTGGAATATGAAGG+TGG + Chr1:77213927-77213946 None:intergenic 50.0%
AGACTGACTAAAAGCCGGAG+TGG + Chr1:77214794-77214813 None:intergenic 50.0%
AGGGGGTGGAATATGAAGGT+GGG + Chr1:77213926-77213945 None:intergenic 50.0%
AGTGCCTGTCGAACCAAATG+TGG + Chr1:77214399-77214418 None:intergenic 50.0%
AGTGTTTCACATGGAGGTGG+GGG + Chr1:77213950-77213969 None:intergenic 50.0%
ATAGTTACCGGGATCGAACC+GGG - Chr1:77212681-77212700 MsG0180004378.01.T01:intron 50.0%
ATCAAGCACGCCTGCATTTG+GGG - Chr1:77214712-77214731 MsG0180004378.01.T01:intron 50.0%
ATTGGGCAGTCAGGATTTGG+AGG - Chr1:77215017-77215036 MsG0180004378.01.T01:intron 50.0%
CAGACTCCCACTCAAGCATT+TGG - Chr1:77214984-77215003 MsG0180004378.01.T01:intron 50.0%
CATCAAGCACGCCTGCATTT+GGG - Chr1:77214711-77214730 MsG0180004378.01.T01:intron 50.0%
CCATTTGGATCGCAGCAAAC+GGG - Chr1:77212955-77212974 MsG0180004378.01.T01:intron 50.0%
CCCTGTGTTACCAAAAGCTG+AGG + Chr1:77214612-77214631 None:intergenic 50.0%
CTGAGTTGCGCCAAATACAC+CGG + Chr1:77213006-77213025 None:intergenic 50.0%
GAATTGTTATGACCGGCCGA+TGG - Chr1:77210938-77210957 MsG0180004378.01.T01:CDS 50.0%
GCAAACGGGTAATTCCGGTT+TGG - Chr1:77212969-77212988 MsG0180004378.01.T01:intron 50.0%
GCTACAGTGGAAGCAGATAG+TGG - Chr1:77215074-77215093 MsG0180004378.01.T01:intron 50.0%
GGTACTTCAATGCCGGCATT+TGG - Chr1:77213079-77213098 MsG0180004378.01.T01:intron 50.0%
GGTACTTCCACCGGTGTATT+TGG - Chr1:77212993-77213012 MsG0180004378.01.T01:intron 50.0%
GTCAGGATTTGGAGGTCAAC+GGG - Chr1:77215025-77215044 MsG0180004378.01.T01:intron 50.0%
GTTGGACTCCCAAATGGCTT+AGG + Chr1:77212934-77212953 None:intergenic 50.0%
TCAGGATTTGGAGGTCAACG+GGG - Chr1:77215026-77215045 MsG0180004378.01.T01:intron 50.0%
TCATCAAGCACGCCTGCATT+TGG - Chr1:77214710-77214729 MsG0180004378.01.T01:intron 50.0%
TCGCAGCAAACGGGTAATTC+CGG - Chr1:77212964-77212983 MsG0180004378.01.T01:intron 50.0%
TGCTGCGATCCAAATGGAGT+TGG + Chr1:77212952-77212971 None:intergenic 50.0%
TGGAATATGAAGGTGGGGGA+AGG + Chr1:77213920-77213939 None:intergenic 50.0%
TGGTTGGGTGGCACTTCAAA+TGG + Chr1:77214302-77214321 None:intergenic 50.0%
TTGGTCCCACATAGGTAGCT+CGG + Chr1:77212750-77212769 None:intergenic 50.0%
! GGTATTGGGCAGTCAGGATT+TGG - Chr1:77215014-77215033 MsG0180004378.01.T01:intron 50.0%
! GGTCAGAAGCCTTCTTTTGG+AGG - Chr1:77214248-77214267 MsG0180004378.01.T01:intron 50.0%
! TCGTCATCGTCATTGGTGGT+AGG - Chr1:77213129-77213148 MsG0180004378.01.T01:CDS 50.0%
!! AACGGGTAATTCCGGTTTGG+TGG - Chr1:77212972-77212991 MsG0180004378.01.T01:intron 50.0%
!! AGTACTGGTATTGGGCAGTC+AGG - Chr1:77215008-77215027 MsG0180004378.01.T01:intron 50.0%
!! CTCTCTAGAACCGAAGTCAG+TGG + Chr1:77210463-77210482 None:intergenic 50.0%
!! GCCTAGCAAAAAAAGCGCCA+TGG + Chr1:77210595-77210614 None:intergenic 50.0%
!! GGCATCTTCAAACCGGCTTT+TGG - Chr1:77213102-77213121 MsG0180004378.01.T01:CDS 50.0%
!!! GCCATGGCGCTTTTTTTGCT+AGG - Chr1:77210591-77210610 MsG0180004378.01.T01:CDS 50.0%
AAGCACCAAAGCAGGAGAGC+TGG + Chr1:77214741-77214760 None:intergenic 55.0%
ACCAGCCGAGCTACCTATGT+GGG - Chr1:77212742-77212761 MsG0180004378.01.T01:intron 55.0%
AGTTGCGCCAAATACACCGG+TGG + Chr1:77213003-77213022 None:intergenic 55.0%
CAAAGTCCGGGTTCAAACCC+CGG + Chr1:77211003-77211022 None:intergenic 55.0%
CAACTTTGCAGCCTGTCCAG+AGG + Chr1:77215102-77215121 None:intergenic 55.0%
CTCTGGACAGGCTGCAAAGT+TGG - Chr1:77215100-77215119 MsG0180004378.01.T01:intron 55.0%
CTGACTAAAAGCCGGAGTGG+TGG + Chr1:77214791-77214810 None:intergenic 55.0%
GCTCGTCTCAATCCGTGTTC+GGG - Chr1:77212876-77212895 MsG0180004378.01.T01:intron 55.0%
GGCTCGTCTCAATCCGTGTT+CGG - Chr1:77212875-77212894 MsG0180004378.01.T01:intron 55.0%
GGGAAGGGGGTGGAATATGA+AGG + Chr1:77213930-77213949 None:intergenic 55.0%
GGGGGTGGAATATGAAGGTG+GGG + Chr1:77213925-77213944 None:intergenic 55.0%
GGGGTGGAATATGAAGGTGG+GGG + Chr1:77213924-77213943 None:intergenic 55.0%
GTGCTCGTAGCACCAAATGC+AGG + Chr1:77214422-77214441 None:intergenic 55.0%
GTTGTTCTGCTGCCCGAACA+CGG + Chr1:77212891-77212910 None:intergenic 55.0%
TAGTTACCGGGATCGAACCG+GGG - Chr1:77212682-77212701 MsG0180004378.01.T01:intron 55.0%
TCGACAGGCACTCCTGCATT+TGG - Chr1:77214407-77214426 MsG0180004378.01.T01:intron 55.0%
TGCTGGGTGCACCAAAAGCA+GGG + Chr1:77214493-77214512 None:intergenic 55.0%
TTCACATGGAGGTGGGGGAA+GGG + Chr1:77213945-77213964 None:intergenic 55.0%
TTGGCACCAGCAGCCCATTT+GGG - Chr1:77214824-77214843 MsG0180004378.01.T01:intron 55.0%
TTTCACATGGAGGTGGGGGA+AGG + Chr1:77213946-77213965 None:intergenic 55.0%
TTTGGCACCAGCAGCCCATT+TGG - Chr1:77214823-77214842 MsG0180004378.01.T01:intron 55.0%
! AACCAGCACCCCAGCTTTTG+GGG - Chr1:77214553-77214572 MsG0180004378.01.T01:intron 55.0%
! ACGGATTGAGACGAGCCGAA+CGG + Chr1:77212872-77212891 None:intergenic 55.0%
! AGATAGTGGCACCTCTGGAC+AGG - Chr1:77215088-77215107 MsG0180004378.01.T01:intron 55.0%
! CAACCAGCACCCCAGCTTTT+GGG - Chr1:77214552-77214571 MsG0180004378.01.T01:intron 55.0%
! CCCGTTTGCTGCGATCCAAA+TGG + Chr1:77212958-77212977 None:intergenic 55.0%
! GAAGCAGATAGTGGCACCTC+TGG - Chr1:77215083-77215102 MsG0180004378.01.T01:intron 55.0%
! GGTAACACAGGGGGTGCATT+TGG - Chr1:77214620-77214639 MsG0180004378.01.T01:intron 55.0%
! TGAACCAAATGCAGGGGTGC+TGG + Chr1:77214582-77214601 None:intergenic 55.0%
! TGCTGGTTGCACCAAACGCA+GGG + Chr1:77214469-77214488 None:intergenic 55.0%
! TGCTGGTTGCACCGAAAGCT+GGG + Chr1:77214541-77214560 None:intergenic 55.0%
! TGCTGGTTGCCCCAAAAGCT+GGG + Chr1:77214565-77214584 None:intergenic 55.0%
! TGCTGGTTGTGATGGTTGGG+TGG + Chr1:77214314-77214333 None:intergenic 55.0%
! TTAAGTCCCCGGTTCGATCC+CGG + Chr1:77212691-77212710 None:intergenic 55.0%
!! ACCACTGTGTTTGGTGGTGG+TGG - Chr1:77214653-77214672 MsG0180004378.01.T01:intron 55.0%
!! ACTGTGTTTGGTGGTGGTGG+GGG - Chr1:77214656-77214675 MsG0180004378.01.T01:intron 55.0%
!! CACTGTGTTTGGTGGTGGTG+GGG - Chr1:77214655-77214674 MsG0180004378.01.T01:intron 55.0%
!! CCACTGTGTTTGGTGGTGGT+GGG - Chr1:77214654-77214673 MsG0180004378.01.T01:intron 55.0%
!! CGGTGGAAGTACCACCAAAC+CGG + Chr1:77212986-77213005 None:intergenic 55.0%
!! CGGTTTGGTGGTACTTCCAC+CGG - Chr1:77212984-77213003 MsG0180004378.01.T01:intron 55.0%
!! GGCACTAGAAGCACCAAAGC+AGG + Chr1:77214749-77214768 None:intergenic 55.0%
!! TTGGTGGTGGTGGGGGATTT+GGG - Chr1:77214663-77214682 MsG0180004378.01.T01:intron 55.0%
!! TTTGGTGCTTCTAGTGCCCC+AGG - Chr1:77214751-77214770 MsG0180004378.01.T01:intron 55.0%
!! TTTGGTGGTGGTGGGGGATT+TGG - Chr1:77214662-77214681 MsG0180004378.01.T01:intron 55.0%
CACCAAAGCAGGAGAGCTGG+AGG + Chr1:77214738-77214757 None:intergenic 60.0%
CACCAGCCGAGCTACCTATG+TGG - Chr1:77212741-77212760 MsG0180004378.01.T01:intron 60.0%
CCACGAGGAGCTAAGATGGG+AGG - Chr1:77215160-77215179 MsG0180004378.01.T01:CDS 60.0%
CCCACCACCACCAAACACAG+TGG + Chr1:77214657-77214676 None:intergenic 60.0%
CCTCCCATCTTAGCTCCTCG+TGG + Chr1:77215163-77215182 None:intergenic 60.0%
CGCTGGGTGCACCAAAAGCA+GGG + Chr1:77214517-77214536 None:intergenic 60.0%
CGGATTGAGACGAGCCGAAC+GGG + Chr1:77212871-77212890 None:intergenic 60.0%
GCAACCAGCACCCCTGCATT+TGG - Chr1:77214575-77214594 MsG0180004378.01.T01:intron 60.0%
GCTGGGTGCACCAAAAGCAG+GGG + Chr1:77214492-77214511 None:intergenic 60.0%
GCTGGTTGCACCAAACGCAG+GGG + Chr1:77214468-77214487 None:intergenic 60.0%
GCTGGTTGCACCGAAAGCTG+GGG + Chr1:77214540-77214559 None:intergenic 60.0%
GCTGGTTGCCCCAAAAGCTG+GGG + Chr1:77214564-77214583 None:intergenic 60.0%
GGATTTGGAGGTCAACGGGG+TGG - Chr1:77215029-77215048 MsG0180004378.01.T01:intron 60.0%
GTGCTGGGTGCACCAAAAGC+AGG + Chr1:77214494-77214513 None:intergenic 60.0%
TCACATGGAGGTGGGGGAAG+GGG + Chr1:77213944-77213963 None:intergenic 60.0%
TCCCACATAGGTAGCTCGGC+TGG + Chr1:77212746-77212765 None:intergenic 60.0%
! GCAACCAGCACCCCAGCTTT+TGG - Chr1:77214551-77214570 MsG0180004378.01.T01:intron 60.0%
! GCAACCAGCACCCCTGCTTT+TGG - Chr1:77214479-77214498 MsG0180004378.01.T01:intron 60.0%
! TGCACCAAAAGCAGGGGTGC+TGG + Chr1:77214486-77214505 None:intergenic 60.0%
!! CGTACTCCCAAATGGGCTGC+TGG + Chr1:77214833-77214852 None:intergenic 60.0%
!! GCACCAAAAGCAGGGGTGCT+GGG + Chr1:77214485-77214504 None:intergenic 60.0%
!! GTGCTGGTTGCACCAAACGC+AGG + Chr1:77214470-77214489 None:intergenic 60.0%
!! GTGCTGGTTGCACCGAAAGC+TGG + Chr1:77214542-77214561 None:intergenic 60.0%
!! GTGCTGGTTGCCCCAAAAGC+TGG + Chr1:77214566-77214585 None:intergenic 60.0%
!! TGGTGGTGGTGGGGGATTTG+GGG - Chr1:77214664-77214683 MsG0180004378.01.T01:intron 60.0%
CACATGGAGGTGGGGGAAGG+GGG + Chr1:77213943-77213962 None:intergenic 65.0%
GAGCTGGAGGCCCCAAATGC+AGG + Chr1:77214725-77214744 None:intergenic 65.0%
GCGCTGGGTGCACCAAAAGC+AGG + Chr1:77214518-77214537 None:intergenic 65.0%
GCTACGAGCACCCCTGCGTT+TGG - Chr1:77214455-77214474 MsG0180004378.01.T01:intron 65.0%
GGCCTCCAGCTCTCCTGCTT+TGG - Chr1:77214733-77214752 MsG0180004378.01.T01:intron 65.0%
GGGCAGTCATCGAGCCCGTT+CGG - Chr1:77212854-77212873 MsG0180004378.01.T01:intron 65.0%
TGCCCCAAAAGCTGGGGTGC+TGG + Chr1:77214558-77214577 None:intergenic 65.0%
TGGTGGCCGGGGTTTGAACC+CGG - Chr1:77210994-77211013 MsG0180004378.01.T01:CDS 65.0%
! GCACCCAGCACCCCTGCTTT+TGG - Chr1:77214503-77214522 MsG0180004378.01.T01:intron 65.0%
ATGGAGGTGGGGGAAGGGGG+TGG + Chr1:77213940-77213959 None:intergenic 70.0%
GCACCCAGCGCCCCAGCTTT+CGG - Chr1:77214527-77214546 MsG0180004378.01.T01:intron 70.0%
TGCACCGAAAGCTGGGGCGC+TGG + Chr1:77214534-77214553 None:intergenic 70.0%
! GCACCGAAAGCTGGGGCGCT+GGG + Chr1:77214533-77214552 None:intergenic 70.0%
Chromosome Type Strat End Strand Name
Chr1 gene 77210441 77215199 77210441 ID=MsG0180004378.01;Name=MsG0180004378.01
Chr1 mRNA 77210441 77215199 77210441 ID=MsG0180004378.01.T01;Parent=MsG0180004378.01;Name=MsG0180004378.01.T01;_AED=0.49;_eAED=0.49;_QI=0|0.72|0.75|0.91|0.63|0.66|12|0|328
Chr1 exon 77210441 77210661 77210441 ID=MsG0180004378.01.T01:exon:12770;Parent=MsG0180004378.01.T01
Chr1 exon 77210831 77211406 77210831 ID=MsG0180004378.01.T01:exon:12769;Parent=MsG0180004378.01.T01
Chr1 exon 77213101 77213225 77213101 ID=MsG0180004378.01.T01:exon:12768;Parent=MsG0180004378.01.T01
Chr1 exon 77215135 77215199 77215135 ID=MsG0180004378.01.T01:exon:12767;Parent=MsG0180004378.01.T01
Chr1 CDS 77215135 77215199 77215135 ID=MsG0180004378.01.T01:cds;Parent=MsG0180004378.01.T01
Chr1 CDS 77213101 77213225 77213101 ID=MsG0180004378.01.T01:cds;Parent=MsG0180004378.01.T01
Chr1 CDS 77210831 77211406 77210831 ID=MsG0180004378.01.T01:cds;Parent=MsG0180004378.01.T01
Chr1 CDS 77210441 77210661 77210441 ID=MsG0180004378.01.T01:cds;Parent=MsG0180004378.01.T01
Gene Sequence

>MsG0180004378.01.T01

ATGGCAAAGGAACAAGATACCACTGACTTCGGTTCTAGAGAGAACTCTAATGAGAACTTCAAGATGTCTAGCTGTGATTTTCGTGTTCCGTTCTTGCGTAATTTGATATATGTTGTTGTTGATTGCAGTTGGGGATTATCTAGGTTTTACTCTATTTGGAAAGTTGTAAGCATGTTTGGTTCAACAAATCGATCATCAGTGTTTGGTCAGAAGCCTTCTTTTGGAGGTTTTGGCTCTACTCCTACTCAAACAAGTCCATTTGAAGTGCCACCCAACCATCACAACCAGCATTTGGAAGTAACACCAACAGTCGCAATCAGCATTTGGAAGCAGCATATTTGGTTCCTCAACACCACATTTGGTTCGACAGGCACTCCTGCATTTGGTGCTACGAGCACTCCTGCATTTGGTGCTACGAGCACCCCTGCGTTTGGTGCAACCAGCACCCCTGCTTTTGGTGCACCCAGCACCCCTGCTTTTGGTGCACCCAGCGCCCCAGCTTTCGGTGCAACCAGCACCCCAGCTTTTGGGGCAACCAGCACCCCTGCATTTGGTTCAACTTCAACCTCAGCTTTTGGTAACACAGGGGGTGCATTTGGCATGTCAAATACCACTGTGTTTGGTGGTGGTGGGGGATTTGGGGCTTCAAGCAGTCCTGTATTTGGTTCATCAAGCACGCCTGCATTTGGGGCCTCCAGCTCTCCTGCTTTGGTGCTTCTAGTGCCCCAGGTTTTAGTTTTGGTTCCACCACTCCGGCTTTTAGTCAGATCACAGACTCCCACTCAAGCATTTGGAAGTACTGGTATTGGGCAGTCAGGATTTGGAGGTCAACGGGGTGGAAGTAGAATAGCTAGTTACTCAGCTACAGTGGAAGCAGATAGTGGCACCTCTGGACAGGCTGCAAAGTTGGAGTCAATATCAGCCATGCCTGTTTACAAAGATAAAAGCCACGAGGAGCTAAGATGGGAGGACTATCAATGGGGATAA
Protein sequence

>MsG0180004378.01.T01

MAKEQDTTDFGSRENSNENFKMSSCDFRVPFLRNLIYVVVDCSWGLSRFYSIWKVVSMFGSTNRSSVFGQKPSFGGFGSTPTQTSPFEVPPNHHNQHLEVTPTVAISIWKQHIWFLNTTFGSTGTPAFGATSTPAFGATSTPAFGATSTPAFGAPSTPAFGAPSAPAFGATSTPAFGATSTPAFGSTSTSAFGNTGGAFGMSNTTVFGGGGGFGASSSPVFGSSSTPAFGASSSPALVLLVPQVLVLVPPLRLLVRSQTPTQAFGSTGIGQSGFGGQRGGSRIASYSATVEADSGTSGQAAKLESISAMPVYKDKSHEELRWEDYQWG*