AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0180004433.01

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0180004433.01.T01 MTR_1g079730 83.158 95 13 1 162 253 357 451 1.60e-47 163
MsG0180004433.01.T01 MTR_1g079730 91.667 72 6 0 1 72 1 72 7.62e-32 122
MsG0180004433.01.T01 MTR_1g079730 96.000 50 2 0 72 121 202 251 2.49e-23 98.2
MsG0180004433.01.T01 MTR_7g116420 70.115 87 23 1 169 252 353 439 3.95e-37 135
MsG0180004433.01.T01 MTR_7g116420 46.078 102 39 3 25 118 144 237 1.37e-18 84.7
MsG0180004433.01.T01 MTR_7g116420 65.714 70 20 3 3 72 5 70 3.89e-17 80.5
MsG0180004433.01.T01 MTR_3g077430 46.610 118 60 1 139 253 348 465 2.48e-29 115
MsG0180004433.01.T01 MTR_5g033650 57.292 96 39 2 160 253 271 366 3.09e-29 113
MsG0180004433.01.T01 MTR_4g105400 47.321 112 56 1 145 253 247 358 1.04e-27 109
MsG0180004433.01.T01 MTR_2g062610 51.136 88 40 1 169 253 249 336 5.22e-27 107
MsG0180004433.01.T01 MTR_2g062610 45.977 87 37 4 33 116 53 132 1.34e-13 69.7
MsG0180004433.01.T01 MTR_2g062610 51.136 88 40 1 169 253 256 343 5.52e-27 107
MsG0180004433.01.T01 MTR_2g062610 45.977 87 37 4 33 116 60 139 1.45e-13 69.7
MsG0180004433.01.T01 MTR_8g069575 54.545 88 37 1 169 253 324 411 6.33e-27 107
MsG0180004433.01.T01 MTR_2g062610 51.136 88 40 1 169 253 339 426 1.27e-26 107
MsG0180004433.01.T01 MTR_2g062610 45.977 87 37 4 33 116 143 222 1.83e-13 69.7
MsG0180004433.01.T01 MTR_8g088510 51.724 87 39 1 169 252 329 415 6.61e-26 105
MsG0180004433.01.T01 MTR_8g088510 64.444 45 15 1 72 116 168 211 6.52e-11 62.0
MsG0180004433.01.T01 MTR_8g069580 52.273 88 39 1 169 253 307 394 3.03e-24 100
MsG0180004433.01.T01 MTR_8g069600 48.864 88 42 1 169 253 306 393 3.49e-24 100
MsG0180004433.01.T01 MTR_8g069610 50.000 88 41 1 169 253 327 414 5.96e-24 99.8
MsG0180004433.01.T01 MTR_2g073050 53.521 71 32 1 183 253 1 70 5.36e-22 86.7
MsG0180004433.01.T01 MTR_8g069630 44.944 89 45 2 169 253 41 129 8.69e-22 88.2
MsG0180004433.01.T01 MTR_2g093840 49.425 87 42 2 169 253 274 360 1.95e-21 92.0
MsG0180004433.01.T01 MTR_8g069720 27.200 250 112 8 73 253 159 407 2.98e-21 92.0
MsG0180004433.01.T01 MTR_8g069590 44.944 89 45 2 169 253 217 305 3.25e-20 87.8
MsG0180004433.01.T01 MTR_8g069715 40.449 89 49 2 169 253 322 410 7.96e-15 73.6
MsG0180004433.01.T01 MTR_3g095890 40.230 87 44 2 169 252 352 433 1.82e-14 72.8
MsG0180004433.01.T01 MTR_8g069695 35.556 90 53 3 169 253 170 259 4.91e-14 70.1
MsG0180004433.01.T01 MTR_8g069640 35.644 101 61 2 156 252 304 404 3.28e-13 68.9
MsG0180004433.01.T01 MTR_8g069660 35.955 89 53 2 169 253 312 400 4.54e-12 65.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0180004433.01.T01 AT5G18460 66.667 87 26 1 169 252 343 429 7.82e-35 129
MsG0180004433.01.T01 AT5G18460 49.485 97 44 3 30 121 134 230 7.73e-18 82.4
MsG0180004433.01.T01 AT1G70550 57.732 97 38 1 160 253 369 465 9.24e-32 122
MsG0180004433.01.T01 AT1G23340 50.000 112 53 1 145 253 298 409 1.72e-31 120
MsG0180004433.01.T01 AT1G23340 50.000 112 53 1 145 253 298 409 1.72e-31 120
MsG0180004433.01.T01 AT5G50150 52.475 101 45 1 156 253 320 420 1.27e-29 115
MsG0180004433.01.T01 AT1G10750 53.608 97 42 1 160 253 371 467 2.02e-29 115
MsG0180004433.01.T01 AT2G44220 30.469 256 102 8 70 253 152 403 2.59e-27 108
MsG0180004433.01.T01 AT3G13510 51.136 88 40 1 169 253 332 419 1.31e-25 104
MsG0180004433.01.T01 AT1G55360 51.136 88 40 1 169 253 335 422 1.74e-25 103
MsG0180004433.01.T01 AT5G56530 48.276 87 42 1 169 252 333 419 2.80e-23 97.8
MsG0180004433.01.T01 AT5G56530 42.045 88 45 4 29 116 135 216 7.75e-11 62.0
MsG0180004433.01.T01 AT5G56530 48.276 87 42 1 169 252 333 419 2.80e-23 97.8
MsG0180004433.01.T01 AT5G56530 42.045 88 45 4 29 116 135 216 7.75e-11 62.0
MsG0180004433.01.T01 AT2G44210 51.389 72 35 0 182 253 344 415 2.40e-22 95.1
MsG0180004433.01.T01 AT2G44210 51.389 72 35 0 182 253 374 445 2.52e-22 95.5
MsG0180004433.01.T01 AT3G48230 51.136 88 40 1 169 253 286 373 3.77e-22 94.4
MsG0180004433.01.T01 AT2G44240 34.118 170 85 8 98 253 246 402 4.82e-19 85.9
MsG0180004433.01.T01 AT2G17750 45.977 87 44 1 169 252 309 395 8.52e-19 85.1
MsG0180004433.01.T01 AT2G19360 45.977 87 44 1 169 252 339 425 7.47e-18 82.8
MsG0180004433.01.T01 AT2G44250 46.667 75 38 1 180 252 334 408 5.82e-16 77.0
MsG0180004433.01.T01 AT2G44250 46.667 75 38 1 180 252 251 325 6.74e-16 76.3
MsG0180004433.01.T01 AT5G19170 39.024 82 47 1 169 247 284 365 1.32e-11 64.3
MsG0180004433.01.T01 AT2G03930 56.522 46 20 0 72 117 43 88 2.66e-11 60.8

Find 79 sgRNAs with CRISPR-Local

Find 355 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AGTTCAGTCTCTCCCAAATT+TGG 0.146471 1:+77887442 MsG0180004433.01.T01:CDS
GTCCTCTCAGGTTCCTTTGA+TGG 0.233441 1:+77887465 MsG0180004433.01.T01:CDS
AACCTGAGAGGACCCAAATT+TGG 0.248097 1:-77887455 None:intergenic
GTCTATACTTTGTGTAGTTT+TGG 0.265572 1:-77885364 None:intergenic
GGGAATTGGTGGATGAGTTT+TGG 0.323810 1:+77890464 MsG0180004433.01.T01:CDS
ACCTGAGAGGACCCAAATTT+GGG 0.351743 1:-77887454 None:intergenic
TGGGGCACATACTTCTATTA+TGG 0.363396 1:+77890775 MsG0180004433.01.T01:CDS
ATAGACAAATTAGTAGCTTA+AGG 0.377646 1:+77885381 MsG0180004433.01.T01:CDS
TACTTCTATTATGGTGGGCC+TGG 0.378607 1:+77890784 MsG0180004433.01.T01:CDS
CACTTCGCCGAGGATGGTTT+CGG 0.383018 1:+77890625 MsG0180004433.01.T01:CDS
TCGGAAAAGCAAGCTACTTT+CGG 0.385050 1:+77890644 MsG0180004433.01.T01:CDS
AGTACCTCTTTGTAGAAGTA+TGG 0.387381 1:-77885321 None:intergenic
GTTCAGTCTCTCCCAAATTT+GGG 0.393611 1:+77887443 MsG0180004433.01.T01:CDS
TCGTTCATCACTTCAATAGA+TGG 0.398062 1:-77887420 None:intergenic
CACCTCCACCAGATGGGTTC+GGG 0.402555 1:+77890601 MsG0180004433.01.T01:CDS
TCCCAAATTTGGGTCCTCTC+AGG 0.406346 1:+77887453 MsG0180004433.01.T01:CDS
AAGAAGATGCAAAGTGGAAC+AGG 0.412758 1:-77885279 None:intergenic
ACACCTCCACCAGATGGGTT+CGG 0.426570 1:+77890600 MsG0180004433.01.T01:CDS
CGAAGTGGCCCGAACCCATC+TGG 0.436084 1:-77890609 None:intergenic
ATCCACCAATTCCCTACTCT+TGG 0.440581 1:-77890455 None:intergenic
AGGATCCAAGAGTAGGGAAT+TGG 0.442405 1:+77890450 MsG0180004433.01.T01:intron
TCACGCCACCATGGTAGAAT+GGG 0.442905 1:+77890541 MsG0180004433.01.T01:CDS
TTCTACCATGGTGGCGTGAT+CGG 0.445099 1:-77890537 None:intergenic
AAACTCCTATAGCAACGAAT+GGG 0.452494 1:+77890756 MsG0180004433.01.T01:CDS
ATCACGCCACCATGGTAGAA+TGG 0.462673 1:+77890540 MsG0180004433.01.T01:CDS
TTAGTAGCTTAAGGCTTGAA+AGG 0.465638 1:+77885390 MsG0180004433.01.T01:CDS
CTTTCGGAACCTTGAGATTG+TGG 0.471570 1:+77890660 MsG0180004433.01.T01:CDS
ACAAAACATTGGTAGGGTAT+TGG 0.479873 1:+77890489 MsG0180004433.01.T01:CDS
AATAAATAACATTACCTCAA+TGG 0.484489 1:-77885456 None:intergenic
TCGGGCCACTTCGCCGAGGA+TGG 0.487121 1:+77890619 MsG0180004433.01.T01:CDS
ATTACCTCAATGGTCAGAAC+AGG 0.496747 1:-77885446 None:intergenic
TGATCTTACAGCATCGAAGC+TGG 0.500473 1:+77887490 MsG0180004433.01.T01:CDS
GTGGCGAGGTGGTGAACTCA+CGG 0.514251 1:+77890564 MsG0180004433.01.T01:CDS
TTTGGCGACAAAACATTGGT+AGG 0.514718 1:+77890482 MsG0180004433.01.T01:CDS
ATCCAAGAGTAGGGAATTGG+TGG 0.515237 1:+77890453 MsG0180004433.01.T01:CDS
CAGCATCGAAGCTGGATGGC+AGG 0.515603 1:+77887498 MsG0180004433.01.T01:CDS
TGTGCCCCATTCGTTGCTAT+AGG 0.517107 1:-77890761 None:intergenic
CCCATCTGGTGGAGGTGTGT+CGG 0.518338 1:-77890595 None:intergenic
ATGAATTAGGATCCAAGAGT+AGG 0.520389 1:+77890443 MsG0180004433.01.T01:intron
GGCCCGAACCCATCTGGTGG+AGG 0.521744 1:-77890603 None:intergenic
GGTGGAGGTGTGTCGGCCGT+CGG 0.522335 1:-77890588 None:intergenic
CTGTAAGATCAGACCATCAA+AGG 0.529106 1:-77887478 None:intergenic
ACTTCTATTATGGTGGGCCT+GGG 0.541635 1:+77890785 MsG0180004433.01.T01:CDS
AAGTGTGTGAATAGCTCCGC+TGG 0.550790 1:-77890512 None:intergenic
GGCACATACTTCTATTATGG+TGG 0.551475 1:+77890778 MsG0180004433.01.T01:CDS
CATGGTAGAATGGGGTGGCG+AGG 0.554975 1:+77890550 MsG0180004433.01.T01:CDS
TGAATTAGGATCCAAGAGTA+GGG 0.555817 1:+77890444 MsG0180004433.01.T01:intron
GCACATACTTCTATTATGGT+GGG 0.558944 1:+77890779 MsG0180004433.01.T01:CDS
GCCGACACACCTCCACCAGA+TGG 0.561814 1:+77890594 MsG0180004433.01.T01:CDS
AAAACTCCTATAGCAACGAA+TGG 0.564055 1:+77890755 MsG0180004433.01.T01:CDS
TTGGCGACAAAACATTGGTA+GGG 0.564932 1:+77890483 MsG0180004433.01.T01:CDS
CAAAAGCATCAATAAGTGTG+TGG 0.577364 1:+77887394 MsG0180004433.01.T01:CDS
CCGACACACCTCCACCAGAT+GGG 0.581497 1:+77890595 MsG0180004433.01.T01:CDS
ACCTCAATGGTCAGAACAGG+AGG 0.593688 1:-77885443 None:intergenic
CTTACAGCATCGAAGCTGGA+TGG 0.593758 1:+77887494 MsG0180004433.01.T01:CDS
CAGAACAAGAAGATGCAAAG+TGG 0.594463 1:-77885285 None:intergenic
ATTGCCATACTTCTACAAAG+AGG 0.594980 1:+77885317 MsG0180004433.01.T01:CDS
GGTAGAATGGGGTGGCGAGG+TGG 0.597596 1:+77890553 MsG0180004433.01.T01:CDS
GTGGTGAACTCACGGACCGA+CGG 0.598866 1:+77890572 MsG0180004433.01.T01:CDS
CGAAACCATCCTCGGCGAAG+TGG 0.605497 1:-77890624 None:intergenic
AGTGGCCCGAACCCATCTGG+TGG 0.606280 1:-77890606 None:intergenic
CAGCATGCGATCGCCTACAC+AGG 0.613169 1:+77887348 MsG0180004433.01.T01:intron
AAAAGCATCAATAAGTGTGT+GGG 0.615457 1:+77887395 MsG0180004433.01.T01:CDS
TATCAATGTCCACAATCTCA+AGG 0.616472 1:-77890669 None:intergenic
GGATCATCACAAGAGATCTA+CGG 0.619381 1:+77887369 MsG0180004433.01.T01:CDS
GCCACCATGGTAGAATGGGG+TGG 0.631388 1:+77890545 MsG0180004433.01.T01:CDS
GGACACTTAGGATTATTCCC+AGG 0.633517 1:-77890802 None:intergenic
CTTAGCCGATCACGCCACCA+TGG 0.640049 1:+77890532 MsG0180004433.01.T01:CDS
CTCGCCACCCCATTCTACCA+TGG 0.644337 1:-77890549 None:intergenic
GCCTCCTGTTCTGACCATTG+AGG 0.647183 1:+77885442 MsG0180004433.01.T01:CDS
CTCTTGTGATGATCCTGTGT+AGG 0.659312 1:-77887361 None:intergenic
AACTCCTATAGCAACGAATG+GGG 0.669417 1:+77890757 MsG0180004433.01.T01:CDS
GCCACCCCATTCTACCATGG+TGG 0.673498 1:-77890546 None:intergenic
ATTGGTAGGGTATTGGCCAG+CGG 0.678771 1:+77890496 MsG0180004433.01.T01:CDS
CACGCCACCATGGTAGAATG+GGG 0.679393 1:+77890542 MsG0180004433.01.T01:CDS
GGGTTCGGGCCACTTCGCCG+AGG 0.684136 1:+77890615 MsG0180004433.01.T01:CDS
ACTTCTACAAAGAGGTACTG+TGG 0.691972 1:+77885325 MsG0180004433.01.T01:CDS
GACCATCAAAGGAACCTGAG+AGG 0.711144 1:-77887467 None:intergenic
ATATTGTTGAGAGAAAGAGA+AGG 0.725419 1:+77885252 MsG0180004433.01.T01:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TAAATTATTATTTATTAAAA+CGG + Chr1:77890241-77890260 MsG0180004433.01.T01:intron 0.0%
!! AACTTATTTAACTAAAAATT+AGG + Chr1:77887974-77887993 MsG0180004433.01.T01:intron 10.0%
!! AATAAAATTGCATAAATTAT+AGG + Chr1:77890387-77890406 MsG0180004433.01.T01:intron 10.0%
!! TAAAATAGTATAAAATTTGA+TGG + Chr1:77886942-77886961 MsG0180004433.01.T01:intron 10.0%
!!! ATACTATTTTATTTAATGAA+TGG + Chr1:77887781-77887800 MsG0180004433.01.T01:intron 10.0%
!!! CAAATTCATTTTTTTTTAAA+TGG + Chr1:77890211-77890230 MsG0180004433.01.T01:intron 10.0%
!!! TAATAAGATAATAATTTTTC+GGG + Chr1:77889661-77889680 MsG0180004433.01.T01:intron 10.0%
!!! TAGTAATTTATTATTTCTAA+TGG + Chr1:77887268-77887287 MsG0180004433.01.T01:intron 10.0%
!!! TATTAATTTATGATTTTCTT+GGG - Chr1:77889709-77889728 None:intergenic 10.0%
!!! TTATTAATTTATGATTTTCT+TGG - Chr1:77889710-77889729 None:intergenic 10.0%
!! AAAAAAAATGAATTTGTATG+TGG - Chr1:77890207-77890226 None:intergenic 15.0%
!! AAAAATTTATTAAGACGATT+CGG - Chr1:77887125-77887144 None:intergenic 15.0%
!! ACTTGAAGTTTAATTAATTA+AGG - Chr1:77887021-77887040 None:intergenic 15.0%
!! ATAAGGTAAAATTATATAAG+AGG - Chr1:77886872-77886891 None:intergenic 15.0%
!! ATTAGATTACTATAAACTTT+AGG + Chr1:77886612-77886631 MsG0180004433.01.T01:intron 15.0%
!! ATTTCAATCTAGATATATTA+TGG + Chr1:77886232-77886251 MsG0180004433.01.T01:intron 15.0%
!! CTCTAAATTAATAAATTTCT+CGG + Chr1:77889964-77889983 MsG0180004433.01.T01:intron 15.0%
!! TATAGGTTAATACATAATTA+GGG + Chr1:77886330-77886349 MsG0180004433.01.T01:intron 15.0%
!! TCAATTATTTGACATTTATT+TGG - Chr1:77886556-77886575 None:intergenic 15.0%
!! TTAAATTATAAGTGATACTT+AGG + Chr1:77887710-77887729 MsG0180004433.01.T01:intron 15.0%
!! TTTAACATGTCTTTATAAAA+TGG + Chr1:77885789-77885808 MsG0180004433.01.T01:intron 15.0%
!!! AGTTTTTTCAATTTTTACAT+TGG - Chr1:77889633-77889652 None:intergenic 15.0%
!!! TCTAAAATAATAAATTTGTC+TGG + Chr1:77889595-77889614 MsG0180004433.01.T01:intron 15.0%
!!! TTATTTGGTAATGATATTAT+TGG - Chr1:77886541-77886560 None:intergenic 15.0%
!!! TTTAATTATCTTTTTTTGGT+TGG + Chr1:77885586-77885605 MsG0180004433.01.T01:intron 15.0%
!!! TTTTTTTCAATATTCTCTTT+GGG - Chr1:77888843-77888862 None:intergenic 15.0%
!! AAGATAATCAAAGTATGATT+TGG - Chr1:77888052-77888071 None:intergenic 20.0%
!! AATAAATAACATTACCTCAA+TGG - Chr1:77885459-77885478 None:intergenic 20.0%
!! AATAATAGTAAGATCATTGT+AGG - Chr1:77886191-77886210 None:intergenic 20.0%
!! AGAATGAAAATAATGATATG+TGG + Chr1:77886291-77886310 MsG0180004433.01.T01:intron 20.0%
!! AGATAATCAAAGTATGATTT+GGG - Chr1:77888051-77888070 None:intergenic 20.0%
!! AGCATTTCATTCAAAATAAT+AGG - Chr1:77886740-77886759 None:intergenic 20.0%
!! ATAATAGTAAGATCATTGTA+GGG - Chr1:77886190-77886209 None:intergenic 20.0%
!! ATAGGTTAATACATAATTAG+GGG + Chr1:77886331-77886350 MsG0180004433.01.T01:intron 20.0%
!! ATGATCTTACTATTATTACA+TGG + Chr1:77886194-77886213 MsG0180004433.01.T01:intron 20.0%
!! CAAAGAGAATATTGAAAAAA+AGG + Chr1:77888842-77888861 MsG0180004433.01.T01:intron 20.0%
!! CACATTATATGAAACATTAA+TGG - Chr1:77885483-77885502 None:intergenic 20.0%
!! CTAAAAGCAAATAAAAACAA+AGG + Chr1:77888467-77888486 MsG0180004433.01.T01:intron 20.0%
!! CTATAGGTTAATACATAATT+AGG + Chr1:77886329-77886348 MsG0180004433.01.T01:intron 20.0%
!! CTCATTACTAAATAAAGTTT+AGG - Chr1:77886420-77886439 None:intergenic 20.0%
!! CTCTATAAATTAATAATGTC+AGG - Chr1:77889991-77890010 None:intergenic 20.0%
!! TATAAACAAAAAAAAAGGGA+AGG - Chr1:77885559-77885578 None:intergenic 20.0%
!! TCTAAATCTTTAATGTCATA+AGG - Chr1:77886889-77886908 None:intergenic 20.0%
!! TTTAACTGTAGTTGTTTATT+TGG + Chr1:77890013-77890032 MsG0180004433.01.T01:intron 20.0%
!! TTTCATATAATGTGTTATAG+TGG + Chr1:77885489-77885508 MsG0180004433.01.T01:intron 20.0%
!!! AAACGCTTTAAATTAATACT+CGG + Chr1:77889557-77889576 MsG0180004433.01.T01:intron 20.0%
!!! CAAAAATCTTATCTTTTTTG+AGG + Chr1:77889286-77889305 MsG0180004433.01.T01:intron 20.0%
!!! CTTTTTTTCAATATTCTCTT+TGG - Chr1:77888844-77888863 None:intergenic 20.0%
!!! GTTTTTTTTTACCACATTTA+TGG - Chr1:77888983-77889002 None:intergenic 20.0%
!!! TTTTGTTGTCAATATGAATT+AGG + Chr1:77890430-77890449 MsG0180004433.01.T01:intron 20.0%
!!! TTTTTTCAATATTCTCTTTG+GGG - Chr1:77888842-77888861 None:intergenic 20.0%
! AAAACAAAGGAACAAAATTG+AGG + Chr1:77888480-77888499 MsG0180004433.01.T01:intron 25.0%
! AAATTCCAACTTACAAAATC+AGG + Chr1:77887582-77887601 MsG0180004433.01.T01:intron 25.0%
! AAATTGGAATGATAGAAAAG+AGG + Chr1:77889318-77889337 MsG0180004433.01.T01:intron 25.0%
! AATGTATAGAAAGTAGAAAC+AGG + Chr1:77887755-77887774 MsG0180004433.01.T01:intron 25.0%
! AATTGGAATGATAGAAAAGA+GGG + Chr1:77889319-77889338 MsG0180004433.01.T01:intron 25.0%
! ACCATAAAGTATGAATTCAA+AGG - Chr1:77890320-77890339 None:intergenic 25.0%
! ACCTTTGAATTCATACTTTA+TGG + Chr1:77890316-77890335 MsG0180004433.01.T01:intron 25.0%
! ACGAATAGTAAAATAGCTAT+TGG + Chr1:77890101-77890120 MsG0180004433.01.T01:intron 25.0%
! ACTAACATAACTACTAACAT+TGG - Chr1:77889398-77889417 None:intergenic 25.0%
! AGGTATTTATAGGTAGAAAT+GGG + Chr1:77888940-77888959 MsG0180004433.01.T01:intron 25.0%
! ATAACTAAATCATGAATGCA+AGG + Chr1:77886916-77886935 MsG0180004433.01.T01:intron 25.0%
! ATAGACAAATTAGTAGCTTA+AGG + Chr1:77885381-77885400 MsG0180004433.01.T01:CDS 25.0%
! CATATTTAAATTTAGCCCAA+TGG - Chr1:77888674-77888693 None:intergenic 25.0%
! GCAAAATCTTTGTATGATTA+TGG + Chr1:77886078-77886097 MsG0180004433.01.T01:intron 25.0%
! TAAAAAAACGTGTAGATTGA+AGG + Chr1:77889015-77889034 MsG0180004433.01.T01:intron 25.0%
! TAAAAAGTGATCAATTTCGT+GGG - Chr1:77888819-77888838 None:intergenic 25.0%
! TAACTAAATCATGAATGCAA+GGG + Chr1:77886917-77886936 MsG0180004433.01.T01:intron 25.0%
! TGGTAAAAAAAAACGTGTAA+AGG + Chr1:77888989-77889008 MsG0180004433.01.T01:intron 25.0%
! TGTTTAGTATTTAACGACTT+TGG - Chr1:77886518-77886537 None:intergenic 25.0%
! TTAAATATATAGACACATGC+AGG - Chr1:77887906-77887925 None:intergenic 25.0%
!! ACAATTTGTATTTTCAGCTA+AGG - Chr1:77890725-77890744 None:intergenic 25.0%
!! ATTTGGCCTAATAATTTTTG+TGG - Chr1:77888001-77888020 None:intergenic 25.0%
!! GATGGAAAATGTAATTTTCA+CGG + Chr1:77886960-77886979 MsG0180004433.01.T01:intron 25.0%
!! TAATACCTGATTTTGTAAGT+TGG - Chr1:77887590-77887609 None:intergenic 25.0%
!! TTAGTAGTTATGTTAGTTCT+CGG + Chr1:77889401-77889420 MsG0180004433.01.T01:intron 25.0%
!! TTTGGCCTAATAATTTTTGT+GGG - Chr1:77888000-77888019 None:intergenic 25.0%
!!! AAACATTATTTTTGTGTGCA+TGG - Chr1:77885530-77885549 None:intergenic 25.0%
!!! AAATCTACTTATTTTCTCCT+TGG + Chr1:77888582-77888601 MsG0180004433.01.T01:intron 25.0%
!!! AAATCTTATCTTTTTTGAGG+AGG + Chr1:77889289-77889308 MsG0180004433.01.T01:intron 25.0%
!!! AATCTACTTATTTTCTCCTT+GGG + Chr1:77888583-77888602 MsG0180004433.01.T01:intron 25.0%
!!! AATCTTATCTTTTTTGAGGA+GGG + Chr1:77889290-77889309 MsG0180004433.01.T01:intron 25.0%
!!! ACTTTATCTCTTCTAAAGTA+TGG + Chr1:77885854-77885873 MsG0180004433.01.T01:intron 25.0%
!!! TTTCAGCTACTTTTTGTATA+GGG + Chr1:77889364-77889383 MsG0180004433.01.T01:intron 25.0%
AAAAAGTGAACAATCTTCGT+GGG + Chr1:77888607-77888626 MsG0180004433.01.T01:intron 30.0%
AAAAAGTGATCAATTTCGTG+GGG - Chr1:77888818-77888837 None:intergenic 30.0%
AAAGGAAAGAAGAGAAATAG+AGG + Chr1:77888860-77888879 MsG0180004433.01.T01:intron 30.0%
AAATATTGACCTTCCAAATG+AGG - Chr1:77890181-77890200 None:intergenic 30.0%
AACTAAATCATGAATGCAAG+GGG + Chr1:77886918-77886937 MsG0180004433.01.T01:intron 30.0%
AAGGAAAGAAGAGAAATAGA+GGG + Chr1:77888861-77888880 MsG0180004433.01.T01:intron 30.0%
AATAATAGGTCAATACAACG+AGG - Chr1:77886726-77886745 None:intergenic 30.0%
AATCTATAAGATCTCCATCT+GGG - Chr1:77885628-77885647 None:intergenic 30.0%
ACAAAGAAGATTGTAACATC+CGG - Chr1:77890066-77890085 None:intergenic 30.0%
ACTACTATGTTCATATGCAT+TGG - Chr1:77889799-77889818 None:intergenic 30.0%
ACTGTACATACCAAACAAAA+AGG - Chr1:77889886-77889905 None:intergenic 30.0%
ATATTGTTGAGAGAAAGAGA+AGG + Chr1:77885252-77885271 MsG0180004433.01.T01:CDS 30.0%
ATGACATTTCAATCCTCATT+TGG + Chr1:77890165-77890184 MsG0180004433.01.T01:intron 30.0%
ATTCTCTATTTCATACCTCT+TGG - Chr1:77885918-77885937 None:intergenic 30.0%
ATTTATGGTAGTTACAACCT+AGG - Chr1:77888968-77888987 None:intergenic 30.0%
CAGATTATTCACATATTGGA+CGG + Chr1:77887866-77887885 MsG0180004433.01.T01:intron 30.0%
CTCACAATCTTATTAAGCAT+CGG + Chr1:77886665-77886684 MsG0180004433.01.T01:intron 30.0%
GAAAATACATCATCACCATT+GGG + Chr1:77888656-77888675 MsG0180004433.01.T01:intron 30.0%
GAGGGAAGTAGAAAATATTT+AGG - Chr1:77886704-77886723 None:intergenic 30.0%
GATTGAATAGTGACTTCTAT+AGG + Chr1:77886313-77886332 MsG0180004433.01.T01:intron 30.0%
GTAAAAAGTGATCAATTTCG+TGG - Chr1:77888820-77888839 None:intergenic 30.0%
GTCCAATATGTGAATAATCT+GGG - Chr1:77887867-77887886 None:intergenic 30.0%
TAAAAAGTGAACAATCTTCG+TGG + Chr1:77888606-77888625 MsG0180004433.01.T01:intron 30.0%
TAAGTGATACTTAGGTAACA+CGG + Chr1:77887718-77887737 MsG0180004433.01.T01:intron 30.0%
TAGTAATGAGAGAAGAAATG+TGG + Chr1:77886430-77886449 MsG0180004433.01.T01:intron 30.0%
TATGAAATAGAGAATGGTGA+TGG + Chr1:77885923-77885942 MsG0180004433.01.T01:intron 30.0%
TGAGGATTGAAATGTCATAT+TGG - Chr1:77890163-77890182 None:intergenic 30.0%
TTAGGCCCACAAAAATTATT+AGG + Chr1:77887992-77888011 MsG0180004433.01.T01:intron 30.0%
TTATGGAAAATAATGCTACG+TGG + Chr1:77886249-77886268 MsG0180004433.01.T01:intron 30.0%
TTGAAATACTAGAAGTCAGA+AGG - Chr1:77887528-77887547 None:intergenic 30.0%
TTGGGACCGAAAATTATAAA+GGG - Chr1:77889691-77889710 None:intergenic 30.0%
! AAAGCTAGTGTTTTCTTTTG+TGG - Chr1:77885655-77885674 None:intergenic 30.0%
! AAGAGGTATGAAATAGAGAA+TGG + Chr1:77885917-77885936 MsG0180004433.01.T01:intron 30.0%
! ACAAAAGAAAACACTAGCTT+TGG + Chr1:77885654-77885673 MsG0180004433.01.T01:intron 30.0%
! ACAGGTTTAAAATTATCCCA+AGG + Chr1:77888755-77888774 MsG0180004433.01.T01:intron 30.0%
! ATACATGAAATGTTGCTTCA+AGG - Chr1:77887687-77887706 None:intergenic 30.0%
! CAGGTTTAAAATTATCCCAA+GGG + Chr1:77888756-77888775 MsG0180004433.01.T01:intron 30.0%
! GAGGTATTTATAGGTAGAAA+TGG + Chr1:77888939-77888958 MsG0180004433.01.T01:intron 30.0%
! GCACAATAGTTAGTTTACTA+AGG + Chr1:77890263-77890282 MsG0180004433.01.T01:intron 30.0%
! GGAGATCCCTTTATAATTTT+CGG + Chr1:77889682-77889701 MsG0180004433.01.T01:intron 30.0%
! GTCTATACTTTGTGTAGTTT+TGG - Chr1:77885367-77885386 None:intergenic 30.0%
! TAGTAGTTATGTTAGTTCTC+GGG + Chr1:77889402-77889421 MsG0180004433.01.T01:intron 30.0%
!! AAAAGCATCAATAAGTGTGT+GGG + Chr1:77887395-77887414 MsG0180004433.01.T01:CDS 30.0%
!! AAGTATGGAGAGGTATTTAT+AGG + Chr1:77888930-77888949 MsG0180004433.01.T01:intron 30.0%
!! CTTATTAAGCATCGGTATTT+CGG + Chr1:77886673-77886692 MsG0180004433.01.T01:intron 30.0%
!! GACTAATTTGCCTTTTTGTT+TGG + Chr1:77889873-77889892 MsG0180004433.01.T01:intron 30.0%
!!! AAGAAGTTCTTTTTTACCCA+CGG + Chr1:77888708-77888727 MsG0180004433.01.T01:intron 30.0%
!!! ATCTTATCTTTTTTGAGGAG+GGG + Chr1:77889291-77889310 MsG0180004433.01.T01:intron 30.0%
!!! ATCTTGTGACCTTTTAAAGT+GGG - Chr1:77885684-77885703 None:intergenic 30.0%
!!! GTTTCAGCTACTTTTTGTAT+AGG + Chr1:77889363-77889382 MsG0180004433.01.T01:intron 30.0%
AAAACTCCTATAGCAACGAA+TGG + Chr1:77890755-77890774 MsG0180004433.01.T01:CDS 35.0%
AAAAGTGAACAATCTTCGTG+GGG + Chr1:77888608-77888627 MsG0180004433.01.T01:intron 35.0%
AAAATATTGAGTAGCCGACT+TGG - Chr1:77888794-77888813 None:intergenic 35.0%
AAACTCCTATAGCAACGAAT+GGG + Chr1:77890756-77890775 MsG0180004433.01.T01:CDS 35.0%
AACCATCATAGTGTGACATT+AGG + Chr1:77886379-77886398 MsG0180004433.01.T01:intron 35.0%
ACAAAACATTGGTAGGGTAT+TGG + Chr1:77890489-77890508 MsG0180004433.01.T01:CDS 35.0%
ACTGTAACAAAGCTAGCATT+TGG - Chr1:77888018-77888037 None:intergenic 35.0%
AGTACCTCTTTGTAGAAGTA+TGG - Chr1:77885324-77885343 None:intergenic 35.0%
ATAGACACACTCATTTCAGT+TGG + Chr1:77887659-77887678 MsG0180004433.01.T01:intron 35.0%
ATGAATTAGGATCCAAGAGT+AGG + Chr1:77890443-77890462 MsG0180004433.01.T01:intron 35.0%
ATTGCCATACTTCTACAAAG+AGG + Chr1:77885317-77885336 MsG0180004433.01.T01:CDS 35.0%
CAATCTATAAGATCTCCATC+TGG - Chr1:77885629-77885648 None:intergenic 35.0%
CATTTCAATCCTCATTTGGA+AGG + Chr1:77890169-77890188 MsG0180004433.01.T01:intron 35.0%
CGTCCAATATGTGAATAATC+TGG - Chr1:77887868-77887887 None:intergenic 35.0%
CTAATTTACGTTGAGTCACA+AGG + Chr1:77889821-77889840 MsG0180004433.01.T01:intron 35.0%
CTTGGGACCGAAAATTATAA+AGG - Chr1:77889692-77889711 None:intergenic 35.0%
GAAAATAATGCTACGTGGTT+TGG + Chr1:77886254-77886273 MsG0180004433.01.T01:intron 35.0%
GACCCAGATTATTCACATAT+TGG + Chr1:77887862-77887881 MsG0180004433.01.T01:intron 35.0%
GCACATACTTCTATTATGGT+GGG + Chr1:77890779-77890798 MsG0180004433.01.T01:CDS 35.0%
GGAAAATACATCATCACCAT+TGG + Chr1:77888655-77888674 MsG0180004433.01.T01:intron 35.0%
GGGTAAAAAAGAACTTCTTG+TGG - Chr1:77888707-77888726 None:intergenic 35.0%
GGTTGTAACTACCATAAATG+TGG + Chr1:77888969-77888988 MsG0180004433.01.T01:intron 35.0%
GTTTCTGCGGTTAAAAAAAC+AGG + Chr1:77888737-77888756 MsG0180004433.01.T01:intron 35.0%
TATCAATGTCCACAATCTCA+AGG - Chr1:77890672-77890691 None:intergenic 35.0%
TCGTTCATCACTTCAATAGA+TGG - Chr1:77887423-77887442 None:intergenic 35.0%
TGAATTAGGATCCAAGAGTA+GGG + Chr1:77890444-77890463 MsG0180004433.01.T01:intron 35.0%
TGTTACAATCTTCTTTGTGC+TGG + Chr1:77890068-77890087 MsG0180004433.01.T01:intron 35.0%
TTAGTAGCTTAAGGCTTGAA+AGG + Chr1:77885390-77885409 MsG0180004433.01.T01:CDS 35.0%
TTATTATTTCAGAGCCCAGA+TGG + Chr1:77885611-77885630 MsG0180004433.01.T01:intron 35.0%
TTTAAAAGGTCACAAGATCC+AGG + Chr1:77885686-77885705 MsG0180004433.01.T01:intron 35.0%
TTTGGATCACCCACTTTAAA+AGG + Chr1:77885672-77885691 MsG0180004433.01.T01:intron 35.0%
! AAATATTGAGTAGCCGACTT+GGG - Chr1:77888793-77888812 None:intergenic 35.0%
! AACTAACGCAAGGGTATATT+TGG + Chr1:77889223-77889242 MsG0180004433.01.T01:intron 35.0%
! ATGATGTATTTTCCCCAAGA+AGG - Chr1:77888649-77888668 None:intergenic 35.0%
! ATTTTTACATTGGCCCAAGT+CGG - Chr1:77889623-77889642 None:intergenic 35.0%
!! CAAAAGCATCAATAAGTGTG+TGG + Chr1:77887394-77887413 MsG0180004433.01.T01:CDS 35.0%
!! GAATGGTGATGGTAATAATG+TGG + Chr1:77885934-77885953 MsG0180004433.01.T01:intron 35.0%
!! GATCTTGTGACCTTTTAAAG+TGG - Chr1:77885685-77885704 None:intergenic 35.0%
!!! GATTGTTCACTTTTTACCCA+AGG - Chr1:77888602-77888621 None:intergenic 35.0%
!!! TCTTATCTTTTTTGAGGAGG+GGG + Chr1:77889292-77889311 MsG0180004433.01.T01:intron 35.0%
AAAATAGTGAGCAGCCTTCT+TGG + Chr1:77888632-77888651 MsG0180004433.01.T01:intron 40.0%
AAACCTAATCAACTCCACGT+AGG - Chr1:77889469-77889488 None:intergenic 40.0%
AAATAGTGAGCAGCCTTCTT+GGG + Chr1:77888633-77888652 MsG0180004433.01.T01:intron 40.0%
AACTCCTATAGCAACGAATG+GGG + Chr1:77890757-77890776 MsG0180004433.01.T01:CDS 40.0%
AAGAAGATGCAAAGTGGAAC+AGG - Chr1:77885282-77885301 None:intergenic 40.0%
AATAATGTGGAGGTGGGAAA+AGG + Chr1:77885947-77885966 MsG0180004433.01.T01:intron 40.0%
AATAGGTCAATACAACGAGG+AGG - Chr1:77886723-77886742 None:intergenic 40.0%
AGTGACTCTTATCAAGCAAC+CGG + Chr1:77890044-77890063 MsG0180004433.01.T01:intron 40.0%
AGTTCAGTCTCTCCCAAATT+TGG + Chr1:77887442-77887461 MsG0180004433.01.T01:CDS 40.0%
ATAAGCAGAGACAGGAGAAA+TGG - Chr1:77890132-77890151 None:intergenic 40.0%
ATACCTCTTGGCATTTCACT+TGG - Chr1:77885906-77885925 None:intergenic 40.0%
ATAGGTCAATACAACGAGGA+GGG - Chr1:77886722-77886741 None:intergenic 40.0%
ATGAGAGAAGAAATGTGGCT+TGG + Chr1:77886435-77886454 MsG0180004433.01.T01:intron 40.0%
ATGGTCATGAGGTATGTATG+TGG + Chr1:77886162-77886181 MsG0180004433.01.T01:intron 40.0%
ATTACCTCAATGGTCAGAAC+AGG - Chr1:77885449-77885468 None:intergenic 40.0%
CAACTTCCAATAGTTGTACC+TGG - Chr1:77885707-77885726 None:intergenic 40.0%
CAAGATCCAGGTACAACTAT+TGG + Chr1:77885698-77885717 MsG0180004433.01.T01:intron 40.0%
CACCTAATGTCACACTATGA+TGG - Chr1:77886384-77886403 None:intergenic 40.0%
CAGAACAAGAAGATGCAAAG+TGG - Chr1:77885288-77885307 None:intergenic 40.0%
CGTTGCAACGTAATTCTAAG+AGG + Chr1:77889846-77889865 MsG0180004433.01.T01:intron 40.0%
CTGTAAGATCAGACCATCAA+AGG - Chr1:77887481-77887500 None:intergenic 40.0%
GAACACAAATTCCACTCTCT+CGG + Chr1:77886108-77886127 MsG0180004433.01.T01:intron 40.0%
GATGGTAATAATGTGGAGGT+GGG + Chr1:77885941-77885960 MsG0180004433.01.T01:intron 40.0%
GCTTGCTTATTCTACTAGTC+AGG + Chr1:77887812-77887831 MsG0180004433.01.T01:intron 40.0%
GGATCATCACAAGAGATCTA+CGG + Chr1:77887369-77887388 MsG0180004433.01.T01:CDS 40.0%
GGCACATACTTCTATTATGG+TGG + Chr1:77890778-77890797 MsG0180004433.01.T01:CDS 40.0%
GTTCAGTCTCTCCCAAATTT+GGG + Chr1:77887443-77887462 MsG0180004433.01.T01:CDS 40.0%
TATTCACATATTGGACGGTC+AGG + Chr1:77887871-77887890 MsG0180004433.01.T01:intron 40.0%
TGAGATGGTGTGAGGAATTA+GGG + Chr1:77888907-77888926 MsG0180004433.01.T01:intron 40.0%
TGATGGTAATAATGTGGAGG+TGG + Chr1:77885940-77885959 MsG0180004433.01.T01:intron 40.0%
TGGGGCACATACTTCTATTA+TGG + Chr1:77890775-77890794 MsG0180004433.01.T01:CDS 40.0%
TGTGAGGAATTAGGGAAGTA+TGG + Chr1:77888915-77888934 MsG0180004433.01.T01:intron 40.0%
TTGGCGACAAAACATTGGTA+GGG + Chr1:77890483-77890502 MsG0180004433.01.T01:CDS 40.0%
TTTGAGGAGGGGGTTTAAAT+TGG + Chr1:77889302-77889321 MsG0180004433.01.T01:intron 40.0%
TTTGGCGACAAAACATTGGT+AGG + Chr1:77890482-77890501 MsG0180004433.01.T01:CDS 40.0%
! AAAGAGGGCATAGTAAGATC+AGG + Chr1:77889334-77889353 MsG0180004433.01.T01:intron 40.0%
! AGAACACACGTTTTTGTGGA+CGG - Chr1:77889056-77889075 None:intergenic 40.0%
! AGAAGAAATGTGGCTTGGAA+GGG + Chr1:77886440-77886459 MsG0180004433.01.T01:intron 40.0%
! CTCAAGAACACACGTTTTTG+TGG - Chr1:77889060-77889079 None:intergenic 40.0%
! TCGGAAAAGCAAGCTACTTT+CGG + Chr1:77890644-77890663 MsG0180004433.01.T01:CDS 40.0%
! TTTTTACATTGGCCCAAGTC+GGG - Chr1:77889622-77889641 None:intergenic 40.0%
!! AATATTGAGTAGCCGACTTG+GGG - Chr1:77888792-77888811 None:intergenic 40.0%
!! ACTTCTACAAAGAGGTACTG+TGG + Chr1:77885325-77885344 MsG0180004433.01.T01:CDS 40.0%
!! GAGTTTTGGCGACAAAACAT+TGG + Chr1:77890478-77890497 MsG0180004433.01.T01:CDS 40.0%
!! TAGTTCGGTTGGTGAACAAA+GGG - Chr1:77889446-77889465 None:intergenic 40.0%
!! TGGTGATGGTAATAATGTGG+AGG + Chr1:77885937-77885956 MsG0180004433.01.T01:intron 40.0%
!!! CTTTGTGTAGTTTTGGATGC+TGG - Chr1:77885360-77885379 None:intergenic 40.0%
AAATGGGACTAGGTGTCCAA+AGG + Chr1:77886011-77886030 MsG0180004433.01.T01:intron 45.0%
AAATTTGTCTGGTCCCGACT+TGG + Chr1:77889606-77889625 MsG0180004433.01.T01:intron 45.0%
AACCTGAGAGGACCCAAATT+TGG - Chr1:77887458-77887477 None:intergenic 45.0%
AAGGGAAAACCGCTGAAAGT+TGG + Chr1:77886458-77886477 MsG0180004433.01.T01:intron 45.0%
AATAGTGAGCAGCCTTCTTG+GGG + Chr1:77888634-77888653 MsG0180004433.01.T01:intron 45.0%
AATGGGACTAGGTGTCCAAA+GGG + Chr1:77886012-77886031 MsG0180004433.01.T01:intron 45.0%
AATTTGTCTGGTCCCGACTT+GGG + Chr1:77889607-77889626 MsG0180004433.01.T01:intron 45.0%
ACCTGAGAGGACCCAAATTT+GGG - Chr1:77887457-77887476 None:intergenic 45.0%
AGAAATAGAGGGAGAGAGTG+AGG + Chr1:77888872-77888891 MsG0180004433.01.T01:intron 45.0%
AGGATCCAAGAGTAGGGAAT+TGG + Chr1:77890450-77890469 MsG0180004433.01.T01:intron 45.0%
AGGTGGGAAAAGGAAAAGAG+GGG + Chr1:77885957-77885976 MsG0180004433.01.T01:intron 45.0%
AGTTGGTCGGTCAGTTCATA+AGG + Chr1:77886475-77886494 MsG0180004433.01.T01:intron 45.0%
ATAGGTAGAAATGGGAGCCT+AGG + Chr1:77888948-77888967 MsG0180004433.01.T01:intron 45.0%
ATCCAAGAGTAGGGAATTGG+TGG + Chr1:77890453-77890472 MsG0180004433.01.T01:CDS 45.0%
ATCCACCAATTCCCTACTCT+TGG - Chr1:77890458-77890477 None:intergenic 45.0%
ATTCTCTGGCAATGGTCATG+AGG + Chr1:77886151-77886170 MsG0180004433.01.T01:intron 45.0%
CAAAGGGAACGGTTCCTATT+CGG + Chr1:77886028-77886047 MsG0180004433.01.T01:intron 45.0%
CCATTGCCAGAGAATACATC+AGG - Chr1:77886146-77886165 None:intergenic 45.0%
CCCACGGTAAAAAGTTTCTG+CGG + Chr1:77888724-77888743 MsG0180004433.01.T01:intron 45.0%
CCTGATGTATTCTCTGGCAA+TGG + Chr1:77886143-77886162 MsG0180004433.01.T01:intron 45.0%
CTCTTGTGATGATCCTGTGT+AGG - Chr1:77887364-77887383 None:intergenic 45.0%
CTGTTGTCACCATAAAGCTC+CGG - Chr1:77887843-77887862 None:intergenic 45.0%
CTTTCGGAACCTTGAGATTG+TGG + Chr1:77890660-77890679 MsG0180004433.01.T01:CDS 45.0%
GAAACAACGCATGGCAAATG+TGG + Chr1:77885983-77886002 MsG0180004433.01.T01:intron 45.0%
GAGGTGGGAAAAGGAAAAGA+GGG + Chr1:77885956-77885975 MsG0180004433.01.T01:intron 45.0%
GATGCACCTGATGTATTCTC+TGG + Chr1:77886137-77886156 MsG0180004433.01.T01:intron 45.0%
GCGTGACTTAACTAACGCAA+GGG + Chr1:77889214-77889233 MsG0180004433.01.T01:intron 45.0%
GGACACTTAGGATTATTCCC+AGG - Chr1:77890805-77890824 None:intergenic 45.0%
GGGGTGCATCTATATAGTCT+TGG + Chr1:77886350-77886369 MsG0180004433.01.T01:intron 45.0%
GTGAGATGGTGTGAGGAATT+AGG + Chr1:77888906-77888925 MsG0180004433.01.T01:intron 45.0%
TCAACTCCACGTAGGTAGTT+CGG - Chr1:77889461-77889480 None:intergenic 45.0%
TGCGTGACTTAACTAACGCA+AGG + Chr1:77889213-77889232 MsG0180004433.01.T01:intron 45.0%
TGCGTGACTTAAGTCACACA+TGG + Chr1:77889130-77889149 MsG0180004433.01.T01:intron 45.0%
TGCGTTAGTTAAGTCACGCA+TGG + Chr1:77889162-77889181 MsG0180004433.01.T01:intron 45.0%
TGTACTGTACTCCTCCGAAT+AGG - Chr1:77886045-77886064 None:intergenic 45.0%
TTCTACTAGTCAGGTCAGTC+CGG + Chr1:77887821-77887840 MsG0180004433.01.T01:intron 45.0%
! ACCGCAGAAACTTTTTACCG+TGG - Chr1:77888728-77888747 None:intergenic 45.0%
! CCGCAGAAACTTTTTACCGT+GGG - Chr1:77888727-77888746 None:intergenic 45.0%
! CTACCTACGTGGAGTTGATT+AGG + Chr1:77889463-77889482 MsG0180004433.01.T01:intron 45.0%
! GAAAACCGCTGAAAGTTGGT+CGG + Chr1:77886462-77886481 MsG0180004433.01.T01:intron 45.0%
! GAGAAGAAATGTGGCTTGGA+AGG + Chr1:77886439-77886458 MsG0180004433.01.T01:intron 45.0%
! GGAATTAGGGAAGTATGGAG+AGG + Chr1:77888920-77888939 MsG0180004433.01.T01:intron 45.0%
! GGCAAATGTGGCATCGAAAT+GGG + Chr1:77885995-77886014 MsG0180004433.01.T01:intron 45.0%
! TGATCTTACAGCATCGAAGC+TGG + Chr1:77887490-77887509 MsG0180004433.01.T01:CDS 45.0%
! TGCTTTTCCGAAACCATCCT+CGG - Chr1:77890635-77890654 None:intergenic 45.0%
! TGGCAAATGTGGCATCGAAA+TGG + Chr1:77885994-77886013 MsG0180004433.01.T01:intron 45.0%
!! ACTTCTATTATGGTGGGCCT+GGG + Chr1:77890785-77890804 MsG0180004433.01.T01:CDS 45.0%
!! GGGAATTGGTGGATGAGTTT+TGG + Chr1:77890464-77890483 MsG0180004433.01.T01:CDS 45.0%
!! GTAGTTCGGTTGGTGAACAA+AGG - Chr1:77889447-77889466 None:intergenic 45.0%
!! TACTTCTATTATGGTGGGCC+TGG + Chr1:77890784-77890803 MsG0180004433.01.T01:CDS 45.0%
!!! AACTAGCGCAGAGGCATTTT+GGG - Chr1:77888125-77888144 None:intergenic 45.0%
!!! TAACTAGCGCAGAGGCATTT+TGG - Chr1:77888126-77888145 None:intergenic 45.0%
!! AAATTTATAAACAAAAAAAA+AGG - Chr1:77885564-77885583 None:intergenic 5.0%
!! AATTTATAAACAAAAAAAAA+GGG - Chr1:77885563-77885582 None:intergenic 5.0%
!! ATTAATACAAATATAAATAA+AGG + Chr1:77888426-77888445 MsG0180004433.01.T01:intron 5.0%
!!! ATAATAAGATAATAATTTTT+CGG + Chr1:77889660-77889679 MsG0180004433.01.T01:intron 5.0%
!!! TTTTTTTAATTATCTTTTTT+TGG + Chr1:77885582-77885601 MsG0180004433.01.T01:intron 5.0%
AAGTGTGTGAATAGCTCCGC+TGG - Chr1:77890515-77890534 None:intergenic 50.0%
AATAGAGGGAGAGAGTGAGG+AGG + Chr1:77888875-77888894 MsG0180004433.01.T01:intron 50.0%
ACCTCAATGGTCAGAACAGG+AGG - Chr1:77885446-77885465 None:intergenic 50.0%
ACGAGTTAACTCACGCACGT+TGG - Chr1:77889096-77889115 None:intergenic 50.0%
ACTGACCGACCAACTTTCAG+CGG - Chr1:77886470-77886489 None:intergenic 50.0%
AGTAACGCTGCGCAAGTAAG+TGG + Chr1:77888178-77888197 MsG0180004433.01.T01:intron 50.0%
ATAGAGGGAGAGAGTGAGGA+GGG + Chr1:77888876-77888895 MsG0180004433.01.T01:intron 50.0%
ATCACGCCACCATGGTAGAA+TGG + Chr1:77890540-77890559 MsG0180004433.01.T01:CDS 50.0%
CGAATAGGAACCGTTCCCTT+TGG - Chr1:77886030-77886049 None:intergenic 50.0%
GACCATCAAAGGAACCTGAG+AGG - Chr1:77887470-77887489 None:intergenic 50.0%
GACTAGGTGTCCAAAGGGAA+CGG + Chr1:77886017-77886036 MsG0180004433.01.T01:intron 50.0%
GAGGGGTAAGAAACAACGCA+TGG + Chr1:77885974-77885993 MsG0180004433.01.T01:intron 50.0%
GCGTGAGTTAACTCGTGCAT+AGG + Chr1:77889100-77889119 MsG0180004433.01.T01:intron 50.0%
GGAGAAAGTGAGATGGTGTG+AGG + Chr1:77888899-77888918 MsG0180004433.01.T01:intron 50.0%
GGAGGTGGGAAAAGGAAAAG+AGG + Chr1:77885955-77885974 MsG0180004433.01.T01:intron 50.0%
GGTGAACAAAGGGACGTTGA+AGG - Chr1:77889436-77889455 None:intergenic 50.0%
GTCCTCTCAGGTTCCTTTGA+TGG + Chr1:77887465-77887484 MsG0180004433.01.T01:CDS 50.0%
GTGCCAAGTGAAATGCCAAG+AGG + Chr1:77885900-77885919 MsG0180004433.01.T01:intron 50.0%
TCACGCCACCATGGTAGAAT+GGG + Chr1:77890541-77890560 MsG0180004433.01.T01:CDS 50.0%
TCCCAAATTTGGGTCCTCTC+AGG + Chr1:77887453-77887472 MsG0180004433.01.T01:CDS 50.0%
TCTCCTGTCTCTGCTTATGC+TGG + Chr1:77890134-77890153 MsG0180004433.01.T01:intron 50.0%
TGACTTAAGTCACGCACCAC+TGG - Chr1:77889126-77889145 None:intergenic 50.0%
TGTGCCCCATTCGTTGCTAT+AGG - Chr1:77890764-77890783 None:intergenic 50.0%
TTAACTCGTGCATAGGCCAG+TGG + Chr1:77889107-77889126 MsG0180004433.01.T01:intron 50.0%
TTGCCAGCATAAGCAGAGAC+AGG - Chr1:77890140-77890159 None:intergenic 50.0%
! ACACACGTTTTTGTGGACGG+TGG - Chr1:77889053-77889072 None:intergenic 50.0%
! CTTACAGCATCGAAGCTGGA+TGG + Chr1:77887494-77887513 MsG0180004433.01.T01:CDS 50.0%
! GCATTTTGGGCATGACTGCA+GGG - Chr1:77888112-77888131 None:intergenic 50.0%
! TGTGGCATCGAAATGGGACT+AGG + Chr1:77886001-77886020 MsG0180004433.01.T01:intron 50.0%
! TTCTACCATGGTGGCGTGAT+CGG - Chr1:77890540-77890559 None:intergenic 50.0%
!! ATTGGTAGGGTATTGGCCAG+CGG + Chr1:77890496-77890515 MsG0180004433.01.T01:CDS 50.0%
AGGAGGGGGAGAAAGTGAGA+TGG + Chr1:77888892-77888911 MsG0180004433.01.T01:intron 55.0%
AGGGAACGGTTCCTATTCGG+AGG + Chr1:77886031-77886050 MsG0180004433.01.T01:intron 55.0%
AGGGTGCGAGCAAAATGTGC+TGG - Chr1:77888093-77888112 None:intergenic 55.0%
CACCAACCGAACTACCTACG+TGG + Chr1:77889452-77889471 MsG0180004433.01.T01:intron 55.0%
CACGCCACCATGGTAGAATG+GGG + Chr1:77890542-77890561 MsG0180004433.01.T01:CDS 55.0%
CACTTCGCCGAGGATGGTTT+CGG + Chr1:77890625-77890644 MsG0180004433.01.T01:CDS 55.0%
CAGGTCAGTCCGGAGCTTTA+TGG + Chr1:77887831-77887850 MsG0180004433.01.T01:intron 55.0%
CTCCACGTAGGTAGTTCGGT+TGG - Chr1:77889457-77889476 None:intergenic 55.0%
GCCTCCTGTTCTGACCATTG+AGG + Chr1:77885442-77885461 MsG0180004433.01.T01:CDS 55.0%
GCGCAAGTTAACTAGCGCAG+AGG - Chr1:77888134-77888153 None:intergenic 55.0%
GGGTGCGAGCAAAATGTGCT+GGG - Chr1:77888092-77888111 None:intergenic 55.0%
GGTCGATCACTTCCCCAAGT+CGG + Chr1:77888777-77888796 MsG0180004433.01.T01:intron 55.0%
GTTAACTCACGCACGTTGGC+TGG - Chr1:77889092-77889111 None:intergenic 55.0%
TAGAGGGAGAGAGTGAGGAG+GGG + Chr1:77888877-77888896 MsG0180004433.01.T01:intron 55.0%
TGCGAGCAAAATGTGCTGGG+TGG - Chr1:77888089-77888108 None:intergenic 55.0%
TGGGGAAGTGATCGACCCTT+GGG - Chr1:77888774-77888793 None:intergenic 55.0%
TTGGGGAAGTGATCGACCCT+TGG - Chr1:77888775-77888794 None:intergenic 55.0%
! ACACCTCCACCAGATGGGTT+CGG + Chr1:77890600-77890619 MsG0180004433.01.T01:CDS 55.0%
! GGCATTTTGGGCATGACTGC+AGG - Chr1:77888113-77888132 None:intergenic 55.0%
AGAGGGAGAGAGTGAGGAGG+GGG + Chr1:77888878-77888897 MsG0180004433.01.T01:intron 60.0%
AGGGTGCGGGCAAAATGTGC+TGG + Chr1:77889255-77889274 MsG0180004433.01.T01:intron 60.0%
CAGCATGCGATCGCCTACAC+AGG + Chr1:77887348-77887367 MsG0180004433.01.T01:intron 60.0%
CATGGTAGAATGGGGTGGCG+AGG + Chr1:77890550-77890569 MsG0180004433.01.T01:CDS 60.0%
CCGACACACCTCCACCAGAT+GGG + Chr1:77890595-77890614 MsG0180004433.01.T01:CDS 60.0%
CGAAACCATCCTCGGCGAAG+TGG - Chr1:77890627-77890646 None:intergenic 60.0%
CTCGCCACCCCATTCTACCA+TGG - Chr1:77890552-77890571 None:intergenic 60.0%
CTTAGCCGATCACGCCACCA+TGG + Chr1:77890532-77890551 MsG0180004433.01.T01:CDS 60.0%
GCATCACTGCTCCGAGAGAG+TGG - Chr1:77886122-77886141 None:intergenic 60.0%
GCCACCATGGTAGAATGGGG+TGG + Chr1:77890545-77890564 MsG0180004433.01.T01:CDS 60.0%
GCCACCCCATTCTACCATGG+TGG - Chr1:77890549-77890568 None:intergenic 60.0%
GGGTGCGGGCAAAATGTGCT+GGG + Chr1:77889256-77889275 MsG0180004433.01.T01:intron 60.0%
GTGGCGAGGTGGTGAACTCA+CGG + Chr1:77890564-77890583 MsG0180004433.01.T01:CDS 60.0%
GTGGTGAACTCACGGACCGA+CGG + Chr1:77890572-77890591 MsG0180004433.01.T01:CDS 60.0%
TGCGGGCAAAATGTGCTGGG+TGG + Chr1:77889259-77889278 MsG0180004433.01.T01:intron 60.0%
! AACTCACGCACGTTGGCTGG+TGG - Chr1:77889089-77889108 None:intergenic 60.0%
! CACCTCCACCAGATGGGTTC+GGG + Chr1:77890601-77890620 MsG0180004433.01.T01:CDS 60.0%
! CAGCATCGAAGCTGGATGGC+AGG + Chr1:77887498-77887517 MsG0180004433.01.T01:CDS 60.0%
! CCCATCTGGTGGAGGTGTGT+CGG - Chr1:77890598-77890617 None:intergenic 60.0%
AGTGGCCCGAACCCATCTGG+TGG - Chr1:77890609-77890628 None:intergenic 65.0%
CGAAGTGGCCCGAACCCATC+TGG - Chr1:77890612-77890631 None:intergenic 65.0%
GCCGACACACCTCCACCAGA+TGG + Chr1:77890594-77890613 MsG0180004433.01.T01:CDS 65.0%
GGTAGAATGGGGTGGCGAGG+TGG + Chr1:77890553-77890572 MsG0180004433.01.T01:CDS 65.0%
GGCCCGAACCCATCTGGTGG+AGG - Chr1:77890606-77890625 None:intergenic 70.0%
TCGGGCCACTTCGCCGAGGA+TGG + Chr1:77890619-77890638 MsG0180004433.01.T01:CDS 70.0%
! GGTGGAGGTGTGTCGGCCGT+CGG - Chr1:77890591-77890610 None:intergenic 70.0%
GGGTTCGGGCCACTTCGCCG+AGG + Chr1:77890615-77890634 MsG0180004433.01.T01:CDS 75.0%
Chromosome Type Strat End Strand Name
Chr1 gene 77885248 77890828 77885248 ID=MsG0180004433.01;Name=MsG0180004433.01
Chr1 mRNA 77885248 77890828 77885248 ID=MsG0180004433.01.T01;Parent=MsG0180004433.01;Name=MsG0180004433.01.T01;_AED=0.29;_eAED=0.31;_QI=0|0|0|1|1|1|3|0|253
Chr1 exon 77885248 77885463 77885248 ID=MsG0180004433.01.T01:exon:14959;Parent=MsG0180004433.01.T01
Chr1 exon 77887351 77887519 77887351 ID=MsG0180004433.01.T01:exon:14960;Parent=MsG0180004433.01.T01
Chr1 exon 77890452 77890828 77890452 ID=MsG0180004433.01.T01:exon:14961;Parent=MsG0180004433.01.T01
Chr1 CDS 77885248 77885463 77885248 ID=MsG0180004433.01.T01:cds;Parent=MsG0180004433.01.T01
Chr1 CDS 77887351 77887519 77887351 ID=MsG0180004433.01.T01:cds;Parent=MsG0180004433.01.T01
Chr1 CDS 77890452 77890828 77890452 ID=MsG0180004433.01.T01:cds;Parent=MsG0180004433.01.T01
Gene Sequence

>MsG0180004433.01.T01

ATGGATATTGTTGAGAGAAAGAGAAGGTATTCCTGTTCCACTTTGCATCTTCTTGTTCTGACTTTCTTCATTGCCATACTTCTACAAAGAGGTACTGTGGCTGAATCATCCAGCATCCAAAACTACACAAAGTATAGACAAATTAGTAGCTTAAGGCTTGAAAGGATTAATAAGCACTTAGACAAGATTAACAAGCCTCCTGTTCTGACCATTGAGCATGCGATCGCCTACACAGGATCATCACAAGAGATCTACGGTGCAAAAGCATCAATAAGTGTGTGGGATCCATCTATTGAAGTGATGAACGAGTTCAGTCTCTCCCAAATTTGGGTCCTCTCAGGTTCCTTTGATGGTCTGATCTTACAGCATCGAAGCTGGATGGCAGGATCCAAGAGTAGGGAATTGGTGGATGAGTTTTGGCGACAAAACATTGGTAGGGTATTGGCCAGCGGAGCTATTCACACACTTAGCCGATCACGCCACCATGGTAGAATGGGGTGGCGAGGTGGTGAACTCACGGACCGACGGCCGACACACCTCCACCAGATGGGTTCGGGCCACTTCGCCGAGGATGGTTTCGGAAAAGCAAGCTACTTTCGGAACCTTGAGATTGTGGACATTGATAACACTCTTAGCTCAGTGCAAAGCATCTCAACCTTAGCTGAAAATACAAATTGTTATGATATTCAAAACTCCTATAGCAACGAATGGGGCACATACTTCTATTATGGTGGGCCTGGGAATAATCCTAAGTGTCCATGA
Protein sequence

>MsG0180004433.01.T01

MDIVERKRRYSCSTLHLLVLTFFIAILLQRGTVAESSSIQNYTKYRQISSLRLERINKHLDKINKPPVLTIEHAIAYTGSSQEIYGAKASISVWDPSIEVMNEFSLSQIWVLSGSFDGLILQHRSWMAGSKSRELVDEFWRQNIGRVLASGAIHTLSRSRHHGRMGWRGGELTDRRPTHLHQMGSGHFAEDGFGKASYFRNLEIVDIDNTLSSVQSISTLAENTNCYDIQNSYSNEWGTYFYYGGPGNNPKCP*