Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0180004452.01.T02 | XP_003590966.2 | 96.377 | 138 | 5 | 0 | 4 | 141 | 45 | 182 | 3.70E-97 | 288 |
| MsG0180004452.01.T01 | XP_003590966.2 | 78.142 | 183 | 36 | 2 | 1 | 180 | 1 | 182 | 3.19E-98 | 292 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0180004452.01.T01 | Q9M836 | 86.047 | 129 | 18 | 0 | 43 | 171 | 38 | 166 | 1.57E-70 | 215 |
| MsG0180004452.01.T02 | Q9M836 | 86.047 | 129 | 18 | 0 | 4 | 132 | 38 | 166 | 5.41E-71 | 214 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0180004452.01.T01 | G7I6S2 | 78.142 | 183 | 36 | 2 | 1 | 180 | 1 | 182 | 1.52e-98 | 292 |
| MsG0180004452.01.T02 | G7I6S2 | 96.377 | 138 | 5 | 0 | 4 | 141 | 45 | 182 | 1.77e-97 | 288 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MsG0180004452.01 | MsG0180004970.01 | 0.809733 | 1.635534e-50 | 9.678623e-48 |
| MsG0180004452.01 | MsG0180006000.01 | 0.806756 | 7.049384e-50 | 3.857413e-47 |
| MsG0180004452.01 | MsG0280011282.01 | 0.806150 | 9.457895e-50 | 5.096042e-47 |
| MsG0180004452.01 | MsG0780040896.01 | 0.801530 | 8.622000e-49 | 4.127112e-46 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0180004452.01.T02 | MTR_1g080210 | 96.377 | 138 | 5 | 0 | 4 | 141 | 45 | 182 | 4.49e-101 | 288 |
| MsG0180004452.01.T02 | MTR_5g072510 | 79.528 | 127 | 25 | 1 | 4 | 129 | 42 | 168 | 1.53e-74 | 222 |
| MsG0180004452.01.T02 | MTR_7g115700 | 71.942 | 139 | 38 | 1 | 4 | 141 | 32 | 170 | 3.47e-74 | 219 |
| MsG0180004452.01.T02 | MTR_1g442860 | 81.667 | 120 | 22 | 0 | 4 | 123 | 70 | 189 | 2.42e-73 | 218 |
| MsG0180004452.01.T02 | MTR_4g094428 | 73.600 | 125 | 33 | 0 | 4 | 128 | 51 | 175 | 1.54e-70 | 212 |
| MsG0180004452.01.T02 | MTR_1g075990 | 80.000 | 125 | 25 | 0 | 4 | 128 | 58 | 182 | 5.51e-66 | 199 |
| MsG0180004452.01.T02 | MTR_3g031830 | 73.913 | 138 | 35 | 1 | 4 | 141 | 47 | 183 | 5.37e-65 | 197 |
| MsG0180004452.01.T02 | MTR_7g097030 | 80.000 | 125 | 25 | 0 | 4 | 128 | 69 | 193 | 8.41e-65 | 197 |
| MsG0180004452.01.T02 | MTR_1g069825 | 80.000 | 125 | 25 | 0 | 4 | 128 | 57 | 181 | 8.88e-65 | 197 |
| MsG0180004452.01.T02 | MTR_2g076400 | 74.790 | 119 | 30 | 0 | 4 | 122 | 38 | 156 | 3.85e-64 | 194 |
| MsG0180004452.01.T02 | MTR_2g016110 | 64.789 | 142 | 49 | 1 | 4 | 145 | 40 | 180 | 3.92e-64 | 194 |
| MsG0180004452.01.T02 | MTR_2g092950 | 73.109 | 119 | 32 | 0 | 4 | 122 | 28 | 146 | 3.04e-63 | 191 |
| MsG0180004452.01.T02 | MTR_4g079930 | 71.429 | 119 | 34 | 0 | 4 | 122 | 34 | 152 | 8.08e-63 | 191 |
| MsG0180004452.01.T02 | MTR_8g086350 | 67.227 | 119 | 39 | 0 | 4 | 122 | 36 | 154 | 1.00e-48 | 155 |
| MsG0180004452.01.T02 | MTR_1g114020 | 71.795 | 39 | 11 | 0 | 4 | 42 | 76 | 114 | 1.70e-14 | 67.4 |
| MsG0180004452.01.T01 | MTR_1g080210 | 78.142 | 183 | 36 | 2 | 1 | 180 | 1 | 182 | 3.87e-102 | 292 |
| MsG0180004452.01.T01 | MTR_5g072510 | 79.528 | 127 | 25 | 1 | 43 | 168 | 42 | 168 | 1.73e-74 | 223 |
| MsG0180004452.01.T01 | MTR_7g115700 | 73.050 | 141 | 33 | 3 | 43 | 180 | 32 | 170 | 3.46e-74 | 221 |
| MsG0180004452.01.T01 | MTR_1g442860 | 81.667 | 120 | 22 | 0 | 43 | 162 | 70 | 189 | 2.22e-73 | 220 |
| MsG0180004452.01.T01 | MTR_4g094428 | 73.600 | 125 | 33 | 0 | 43 | 167 | 51 | 175 | 2.12e-70 | 213 |
| MsG0180004452.01.T01 | MTR_1g075990 | 80.000 | 125 | 25 | 0 | 43 | 167 | 58 | 182 | 1.30e-65 | 200 |
| MsG0180004452.01.T01 | MTR_7g097030 | 80.000 | 125 | 25 | 0 | 43 | 167 | 69 | 193 | 1.37e-64 | 198 |
| MsG0180004452.01.T01 | MTR_3g031830 | 73.913 | 138 | 35 | 1 | 43 | 180 | 47 | 183 | 1.48e-64 | 198 |
| MsG0180004452.01.T01 | MTR_1g069825 | 80.000 | 125 | 25 | 0 | 43 | 167 | 57 | 181 | 1.50e-64 | 198 |
| MsG0180004452.01.T01 | MTR_2g016110 | 64.789 | 142 | 49 | 1 | 43 | 184 | 40 | 180 | 6.29e-64 | 195 |
| MsG0180004452.01.T01 | MTR_2g076400 | 74.790 | 119 | 30 | 0 | 43 | 161 | 38 | 156 | 7.12e-64 | 195 |
| MsG0180004452.01.T01 | MTR_2g092950 | 68.750 | 128 | 40 | 0 | 34 | 161 | 19 | 146 | 4.96e-63 | 192 |
| MsG0180004452.01.T01 | MTR_4g079930 | 71.429 | 119 | 34 | 0 | 43 | 161 | 34 | 152 | 1.32e-62 | 192 |
| MsG0180004452.01.T01 | MTR_8g086350 | 63.359 | 131 | 48 | 0 | 31 | 161 | 24 | 154 | 3.27e-48 | 155 |
| MsG0180004452.01.T01 | MTR_1g114020 | 71.795 | 39 | 11 | 0 | 43 | 81 | 76 | 114 | 3.34e-14 | 67.8 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0180004452.01.T02 | AT3G04510 | 86.047 | 129 | 18 | 0 | 4 | 132 | 38 | 166 | 5.52e-72 | 214 |
| MsG0180004452.01.T02 | AT1G07090 | 68.310 | 142 | 42 | 1 | 4 | 142 | 36 | 177 | 6.21e-71 | 212 |
| MsG0180004452.01.T02 | AT5G28490 | 86.400 | 125 | 17 | 0 | 4 | 128 | 30 | 154 | 2.06e-69 | 207 |
| MsG0180004452.01.T02 | AT5G58500 | 67.606 | 142 | 44 | 2 | 4 | 143 | 24 | 165 | 7.53e-69 | 206 |
| MsG0180004452.01.T02 | AT2G31160 | 82.171 | 129 | 22 | 1 | 4 | 131 | 59 | 187 | 3.15e-67 | 203 |
| MsG0180004452.01.T02 | AT3G23290 | 84.167 | 120 | 19 | 0 | 4 | 123 | 53 | 172 | 1.18e-65 | 198 |
| MsG0180004452.01.T02 | AT2G42610 | 72.269 | 119 | 33 | 0 | 4 | 122 | 30 | 148 | 1.01e-61 | 188 |
| MsG0180004452.01.T02 | AT2G42610 | 72.269 | 119 | 33 | 0 | 4 | 122 | 30 | 148 | 1.01e-61 | 188 |
| MsG0180004452.01.T02 | AT1G78815 | 67.227 | 119 | 39 | 0 | 4 | 122 | 45 | 163 | 9.36e-60 | 183 |
| MsG0180004452.01.T02 | AT4G18610 | 65.833 | 120 | 40 | 1 | 4 | 122 | 42 | 161 | 1.00e-56 | 176 |
| MsG0180004452.01.T02 | AT1G16910 | 62.903 | 124 | 46 | 0 | 4 | 127 | 28 | 151 | 1.91e-55 | 171 |
| MsG0180004452.01.T01 | AT3G04510 | 86.047 | 129 | 18 | 0 | 43 | 171 | 38 | 166 | 1.60e-71 | 215 |
| MsG0180004452.01.T01 | AT1G07090 | 68.310 | 142 | 42 | 1 | 43 | 181 | 36 | 177 | 9.73e-71 | 213 |
| MsG0180004452.01.T01 | AT5G28490 | 86.400 | 125 | 17 | 0 | 43 | 167 | 30 | 154 | 3.15e-69 | 209 |
| MsG0180004452.01.T01 | AT5G58500 | 67.606 | 142 | 44 | 2 | 43 | 182 | 24 | 165 | 1.06e-68 | 207 |
| MsG0180004452.01.T01 | AT2G31160 | 82.171 | 129 | 22 | 1 | 43 | 170 | 59 | 187 | 7.50e-67 | 204 |
| MsG0180004452.01.T01 | AT3G23290 | 80.469 | 128 | 25 | 0 | 35 | 162 | 45 | 172 | 1.05e-65 | 200 |
| MsG0180004452.01.T01 | AT2G42610 | 72.269 | 119 | 33 | 0 | 43 | 161 | 30 | 148 | 1.29e-61 | 189 |
| MsG0180004452.01.T01 | AT2G42610 | 72.269 | 119 | 33 | 0 | 43 | 161 | 30 | 148 | 1.29e-61 | 189 |
| MsG0180004452.01.T01 | AT1G78815 | 67.227 | 119 | 39 | 0 | 43 | 161 | 45 | 163 | 3.47e-59 | 184 |
| MsG0180004452.01.T01 | AT4G18610 | 65.833 | 120 | 40 | 1 | 43 | 161 | 42 | 161 | 2.56e-56 | 176 |
| MsG0180004452.01.T01 | AT1G16910 | 62.903 | 124 | 46 | 0 | 43 | 166 | 28 | 151 | 8.62e-55 | 171 |
Find 57 sgRNAs with CRISPR-Local
Find 59 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GTTCTGTTAGGATTTATTTA+AGG | 0.161002 | 1:+78167525 | MsG0180004452.01.T01:CDS |
| GGACAAGGAGCTGGTGGATT+AGG | 0.248534 | 1:-78167395 | None:intergenic |
| CGCTCTCATCGGTCGTCTTC+GGG | 0.260569 | 1:+78167451 | MsG0180004452.01.T01:CDS |
| AACCATCCTTGTCCTTTCTT+TGG | 0.263470 | 1:+78167368 | MsG0180004452.01.T01:CDS |
| ATCTTCATTCTCCATGGATT+TGG | 0.284328 | 1:+78167094 | None:intergenic |
| TGTGTTCCAGTCTCTCTCTT+TGG | 0.296238 | 1:-78167231 | None:intergenic |
| ACGCTCTCATCGGTCGTCTT+CGG | 0.308665 | 1:+78167450 | MsG0180004452.01.T01:CDS |
| CTCAACTATCTTGACCAGTT+TGG | 0.334013 | 1:+78167329 | MsG0180004452.01.T01:CDS |
| TTCTGTTAGGATTTATTTAA+GGG | 0.334103 | 1:+78167526 | MsG0180004452.01.T01:CDS |
| GTTGAAGATACCTTAGGTTT+AGG | 0.347381 | 1:-78167608 | None:intergenic |
| CGTCCTGAGACTAACCCTTT+TGG | 0.356884 | 1:+78167497 | MsG0180004452.01.T01:CDS |
| GACAAGGAGCTGGTGGATTA+GGG | 0.371455 | 1:-78167394 | None:intergenic |
| AGAGTGGTGGACGGTGGTTT+CGG | 0.448012 | 1:-78167268 | None:intergenic |
| ACAAGGATGGTTGTGAACTT+TGG | 0.448409 | 1:-78167357 | None:intergenic |
| GTCATTGAAGATCCACTGTT+TGG | 0.454701 | 1:-78167150 | None:intergenic |
| GTGTTAGCTATGAAAAGAAA+AGG | 0.462297 | 1:+78167579 | MsG0180004452.01.T01:CDS |
| GCTAGCTCCTTTGAATATTG+AGG | 0.466714 | 1:-78167652 | None:intergenic |
| CTTCCACTTCGGCGCTATTG+TGG | 0.470554 | 1:-78167172 | None:intergenic |
| TGAAAACCAAAGAGAGAGAC+TGG | 0.487644 | 1:+78167225 | MsG0180004452.01.T01:CDS |
| GCAGTGGTTGAAGATACCTT+AGG | 0.494187 | 1:-78167614 | None:intergenic |
| GGACATGGGAACCGCTACAT+AGG | 0.494340 | 1:-78167298 | None:intergenic |
| CTAACAGAACGAGAACCAAA+AGG | 0.506615 | 1:-78167512 | None:intergenic |
| CATGTCCTCTTCGTCAAGCG+TGG | 0.509192 | 1:+78167417 | MsG0180004452.01.T01:CDS |
| ATGTCCTCTTCGTCAAGCGT+GGG | 0.521066 | 1:+78167418 | MsG0180004452.01.T01:CDS |
| ATCTGATGAAACCAAATCCA+TGG | 0.525590 | 1:-78167105 | None:intergenic |
| CACGCTTGACGAAGAGGACA+TGG | 0.538595 | 1:-78167416 | None:intergenic |
| GAACCAAAAGGGTTAGTCTC+AGG | 0.546578 | 1:-78167500 | None:intergenic |
| AAGGAAGAGGCCTAAACCTA+AGG | 0.549128 | 1:+78167598 | MsG0180004452.01.T01:CDS |
| GGATTAGGGATGCCAAAGAA+AGG | 0.556995 | 1:-78167380 | None:intergenic |
| AGAGGACATGGACAAGGAGC+TGG | 0.558895 | 1:-78167404 | None:intergenic |
| TAACAGAACGAGAACCAAAA+GGG | 0.559474 | 1:-78167511 | None:intergenic |
| GTCAAGACCTCAATATTCAA+AGG | 0.564195 | 1:+78167645 | MsG0180004452.01.T01:CDS |
| GACATGGGAACCGCTACATA+GGG | 0.570761 | 1:-78167297 | None:intergenic |
| CTACCCCACGCTTGACGAAG+AGG | 0.572444 | 1:-78167422 | None:intergenic |
| GGTAGTCTCGACGCTCTCAT+CGG | 0.573996 | 1:+78167440 | MsG0180004452.01.T01:CDS |
| TGACCACAATAGCGCCGAAG+TGG | 0.576244 | 1:+78167169 | MsG0180004452.01.T01:CDS |
| AGTTGAGAAACTCAAGGACA+TGG | 0.576269 | 1:-78167313 | None:intergenic |
| TGTTTGGACTCTCTACACTC+TGG | 0.583747 | 1:-78167134 | None:intergenic |
| GCTATGAAAAGAAAAGGAAG+AGG | 0.585681 | 1:+78167585 | MsG0180004452.01.T01:CDS |
| GGAACCGCTACATAGGGCTA+AGG | 0.607722 | 1:-78167291 | None:intergenic |
| TTGATGTTGAACTTCCACTT+CGG | 0.615259 | 1:-78167183 | None:intergenic |
| CTACATAGGGCTAAGGAGAG+TGG | 0.621558 | 1:-78167284 | None:intergenic |
| GGGCTAAGGAGAGTGGTGGA+CGG | 0.632875 | 1:-78167277 | None:intergenic |
| CTAAGGAGAGTGGTGGACGG+TGG | 0.639457 | 1:-78167274 | None:intergenic |
| CAAGATAGTTGAGAAACTCA+AGG | 0.640517 | 1:-78167319 | None:intergenic |
| GGACATGGACAAGGAGCTGG+TGG | 0.641101 | 1:-78167401 | None:intergenic |
| TGTCCTCTTCGTCAAGCGTG+GGG | 0.649722 | 1:+78167419 | MsG0180004452.01.T01:CDS |
| TGCCAAAGAAAGGACAAGGA+TGG | 0.651402 | 1:-78167370 | None:intergenic |
| TGACGAAGAGGACATGGACA+AGG | 0.652351 | 1:-78167410 | None:intergenic |
| CATAGGGCTAAGGAGAGTGG+TGG | 0.653546 | 1:-78167281 | None:intergenic |
| CTCTCCTTAGCCCTATGTAG+CGG | 0.658117 | 1:+78167287 | MsG0180004452.01.T01:CDS |
| GTTGAGAAACTCAAGGACAT+GGG | 0.658451 | 1:-78167312 | None:intergenic |
| CGGGCTGCTTACGAAGAGAA+CGG | 0.659740 | 1:+78167470 | MsG0180004452.01.T01:CDS |
| GGGATGCCAAAGAAAGGACA+AGG | 0.667842 | 1:-78167374 | None:intergenic |
| AGTGTAGAGAGTCCAAACAG+TGG | 0.685251 | 1:+78167138 | MsG0180004452.01.T01:CDS |
| GTCTTGACTAGAACTAGCAG+TGG | 0.689032 | 1:-78167630 | None:intergenic |
| GCTGCTTACGAAGAGAACGG+TGG | 0.749462 | 1:+78167473 | MsG0180004452.01.T01:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TTCTGTTAGGATTTATTTAA+GGG | + | Chr1:78167526-78167545 | MsG0180004452.01.T01:CDS | 20.0% |
| ! | GTTCTGTTAGGATTTATTTA+AGG | + | Chr1:78167525-78167544 | MsG0180004452.01.T01:CDS | 25.0% |
| GTGTTAGCTATGAAAAGAAA+AGG | + | Chr1:78167579-78167598 | MsG0180004452.01.T01:CDS | 30.0% | |
| !! | GATTTTCAAGCAAAATCTAG+AGG | + | Chr1:78167557-78167576 | MsG0180004452.01.T01:CDS | 30.0% |
| !!! | TCTCTCTTTGGTTTTCATAA+CGG | - | Chr1:78167222-78167241 | None:intergenic | 30.0% |
| CAAGATAGTTGAGAAACTCA+AGG | - | Chr1:78167322-78167341 | None:intergenic | 35.0% | |
| GCTATGAAAAGAAAAGGAAG+AGG | + | Chr1:78167585-78167604 | MsG0180004452.01.T01:CDS | 35.0% | |
| GTCAAGACCTCAATATTCAA+AGG | + | Chr1:78167645-78167664 | MsG0180004452.01.T01:CDS | 35.0% | |
| GTTGAAGATACCTTAGGTTT+AGG | - | Chr1:78167611-78167630 | None:intergenic | 35.0% | |
| TAACAGAACGAGAACCAAAA+GGG | - | Chr1:78167514-78167533 | None:intergenic | 35.0% | |
| TTGATGTTGAACTTCCACTT+CGG | - | Chr1:78167186-78167205 | None:intergenic | 35.0% | |
| ! | TTTTCATAACGGCTTGAAGT+TGG | - | Chr1:78167211-78167230 | None:intergenic | 35.0% |
| !!! | GAACTTTGGTTTTTCCAAAC+TGG | - | Chr1:78167346-78167365 | None:intergenic | 35.0% |
| AACCATCCTTGTCCTTTCTT+TGG | + | Chr1:78167368-78167387 | MsG0180004452.01.T01:CDS | 40.0% | |
| ACAAGGATGGTTGTGAACTT+TGG | - | Chr1:78167360-78167379 | None:intergenic | 40.0% | |
| AGTTGAGAAACTCAAGGACA+TGG | - | Chr1:78167316-78167335 | None:intergenic | 40.0% | |
| CTAACAGAACGAGAACCAAA+AGG | - | Chr1:78167515-78167534 | None:intergenic | 40.0% | |
| CTCAACTATCTTGACCAGTT+TGG | + | Chr1:78167329-78167348 | MsG0180004452.01.T01:CDS | 40.0% | |
| GTCATTGAAGATCCACTGTT+TGG | - | Chr1:78167153-78167172 | None:intergenic | 40.0% | |
| GTTGAGAAACTCAAGGACAT+GGG | - | Chr1:78167315-78167334 | None:intergenic | 40.0% | |
| TGAAAACCAAAGAGAGAGAC+TGG | + | Chr1:78167225-78167244 | MsG0180004452.01.T01:CDS | 40.0% | |
| !!! | CTTTTGGTTCTCGTTCTGTT+AGG | + | Chr1:78167513-78167532 | MsG0180004452.01.T01:CDS | 40.0% |
| AAGGAAGAGGCCTAAACCTA+AGG | + | Chr1:78167598-78167617 | MsG0180004452.01.T01:CDS | 45.0% | |
| AGTGTAGAGAGTCCAAACAG+TGG | + | Chr1:78167138-78167157 | MsG0180004452.01.T01:CDS | 45.0% | |
| GCAGTGGTTGAAGATACCTT+AGG | - | Chr1:78167617-78167636 | None:intergenic | 45.0% | |
| GGATTAGGGATGCCAAAGAA+AGG | - | Chr1:78167383-78167402 | None:intergenic | 45.0% | |
| GTCTTGACTAGAACTAGCAG+TGG | - | Chr1:78167633-78167652 | None:intergenic | 45.0% | |
| TGCCAAAGAAAGGACAAGGA+TGG | - | Chr1:78167373-78167392 | None:intergenic | 45.0% | |
| TGTGTTCCAGTCTCTCTCTT+TGG | - | Chr1:78167234-78167253 | None:intergenic | 45.0% | |
| TGTTTGGACTCTCTACACTC+TGG | - | Chr1:78167137-78167156 | None:intergenic | 45.0% | |
| !! | GAACCAAAAGGGTTAGTCTC+AGG | - | Chr1:78167503-78167522 | None:intergenic | 45.0% |
| ATGTCCTCTTCGTCAAGCGT+GGG | + | Chr1:78167418-78167437 | MsG0180004452.01.T01:CDS | 50.0% | |
| CTACATAGGGCTAAGGAGAG+TGG | - | Chr1:78167287-78167306 | None:intergenic | 50.0% | |
| CTCTCCTTAGCCCTATGTAG+CGG | + | Chr1:78167287-78167306 | MsG0180004452.01.T01:CDS | 50.0% | |
| GACATGGGAACCGCTACATA+GGG | - | Chr1:78167300-78167319 | None:intergenic | 50.0% | |
| GGGATGCCAAAGAAAGGACA+AGG | - | Chr1:78167377-78167396 | None:intergenic | 50.0% | |
| TGACGAAGAGGACATGGACA+AGG | - | Chr1:78167413-78167432 | None:intergenic | 50.0% | |
| ! | CGTCCTGAGACTAACCCTTT+TGG | + | Chr1:78167497-78167516 | MsG0180004452.01.T01:CDS | 50.0% |
| !! | GACAAGGAGCTGGTGGATTA+GGG | - | Chr1:78167397-78167416 | None:intergenic | 50.0% |
| ACGCTCTCATCGGTCGTCTT+CGG | + | Chr1:78167450-78167469 | MsG0180004452.01.T01:CDS | 55.0% | |
| AGAGGACATGGACAAGGAGC+TGG | - | Chr1:78167407-78167426 | None:intergenic | 55.0% | |
| CACGCTTGACGAAGAGGACA+TGG | - | Chr1:78167419-78167438 | None:intergenic | 55.0% | |
| CATAGGGCTAAGGAGAGTGG+TGG | - | Chr1:78167284-78167303 | None:intergenic | 55.0% | |
| CATGTCCTCTTCGTCAAGCG+TGG | + | Chr1:78167417-78167436 | MsG0180004452.01.T01:CDS | 55.0% | |
| CGGGCTGCTTACGAAGAGAA+CGG | + | Chr1:78167470-78167489 | MsG0180004452.01.T01:CDS | 55.0% | |
| CTTCCACTTCGGCGCTATTG+TGG | - | Chr1:78167175-78167194 | None:intergenic | 55.0% | |
| GCTGCTTACGAAGAGAACGG+TGG | + | Chr1:78167473-78167492 | MsG0180004452.01.T01:CDS | 55.0% | |
| GGAACCGCTACATAGGGCTA+AGG | - | Chr1:78167294-78167313 | None:intergenic | 55.0% | |
| GGACATGGGAACCGCTACAT+AGG | - | Chr1:78167301-78167320 | None:intergenic | 55.0% | |
| GGTAGTCTCGACGCTCTCAT+CGG | + | Chr1:78167440-78167459 | MsG0180004452.01.T01:CDS | 55.0% | |
| TGTCCTCTTCGTCAAGCGTG+GGG | + | Chr1:78167419-78167438 | MsG0180004452.01.T01:CDS | 55.0% | |
| ! | TGACCACAATAGCGCCGAAG+TGG | + | Chr1:78167169-78167188 | MsG0180004452.01.T01:CDS | 55.0% |
| !! | AGAGTGGTGGACGGTGGTTT+CGG | - | Chr1:78167271-78167290 | None:intergenic | 55.0% |
| !! | GGACAAGGAGCTGGTGGATT+AGG | - | Chr1:78167398-78167417 | None:intergenic | 55.0% |
| CGCTCTCATCGGTCGTCTTC+GGG | + | Chr1:78167451-78167470 | MsG0180004452.01.T01:CDS | 60.0% | |
| CTACCCCACGCTTGACGAAG+AGG | - | Chr1:78167425-78167444 | None:intergenic | 60.0% | |
| GGACATGGACAAGGAGCTGG+TGG | - | Chr1:78167404-78167423 | None:intergenic | 60.0% | |
| ! | GGGCTAAGGAGAGTGGTGGA+CGG | - | Chr1:78167280-78167299 | None:intergenic | 60.0% |
| !! | CTAAGGAGAGTGGTGGACGG+TGG | - | Chr1:78167277-78167296 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| Chr1 | gene | 78167107 | 78167673 | 78167107 | ID=MsG0180004452.01;Name=MsG0180004452.01 |
| Chr1 | mRNA | 78167107 | 78167673 | 78167107 | ID=MsG0180004452.01.T01;Parent=MsG0180004452.01;Name=MsG0180004452.01.T01;_AED=0.52;_eAED=0.55;_QI=0|-1|0|1|-1|1|1|0|188 |
| Chr1 | exon | 78167107 | 78167673 | 78167107 | ID=MsG0180004452.01.T01:exon:45327;Parent=MsG0180004452.01.T01 |
| Chr1 | CDS | 78167107 | 78167673 | 78167107 | ID=MsG0180004452.01.T01:cds;Parent=MsG0180004452.01.T01 |
| Chr1 | mRNA | 78167224 | 78167673 | 78167224 | ID=MsG0180004452.01.T02;Parent=MsG0180004452.01;Name=MsG0180004452.01.T02;_AED=0.50;_eAED=0.50;_QI=0|-1|0|1|-1|0|1|0|149 |
| Chr1 | exon | 78167224 | 78167673 | 78167224 | ID=MsG0180004452.01.T02:exon:45328;Parent=MsG0180004452.01.T02 |
| Chr1 | CDS | 78167224 | 78167673 | 78167224 | ID=MsG0180004452.01.T02:cds;Parent=MsG0180004452.01.T02 |
| Chr1 | mRNA | 78167315 | 78167545 | 78167315 | ID=MsG0180004452.01.T03;Parent=MsG0180004452.01;Name=MsG0180004452.01.T03;_AED=0.50;_eAED=0.50;_QI=0|-1|0|1|-1|0|1|0|76 |
| Chr1 | exon | 78167315 | 78167545 | 78167315 | ID=MsG0180004452.01.T03:exon:45329;Parent=MsG0180004452.01.T03 |
| Chr1 | CDS | 78167315 | 78167545 | 78167315 | ID=MsG0180004452.01.T03:cds;Parent=MsG0180004452.01.T03 |
| Gene Sequence |
| Protein sequence |
