AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0280011282.01


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0280011282.01.T01 MTR_2g101500 95.238 315 13 2 1 314 1 314 0.0 617
MsG0280011282.01.T01 MTR_5g030710 47.714 350 113 8 1 318 16 327 8.59e-98 293
MsG0280011282.01.T01 MTR_8g103030 53.988 326 93 12 1 314 1 281 1.55e-97 290
MsG0280011282.01.T01 MTR_8g067530 49.849 331 119 10 6 318 47 348 1.64e-94 285
MsG0280011282.01.T01 MTR_6g488150 52.685 298 75 9 20 315 10 243 2.63e-85 258
MsG0280011282.01.T01 MTR_5g067350 48.961 337 120 12 2 315 29 336 2.63e-84 258
MsG0280011282.01.T01 MTR_1g080860 44.444 297 94 8 23 315 13 242 5.89e-62 197
MsG0280011282.01.T01 MTR_1g080860 44.108 297 95 8 23 315 13 242 6.21e-61 195
MsG0280011282.01.T01 MTR_1g070520 64.706 153 48 3 167 315 84 234 2.25e-60 194
MsG0280011282.01.T01 MTR_1g093240 60.870 161 58 3 167 324 78 236 3.05e-60 193
MsG0280011282.01.T01 MTR_7g096090 63.333 150 50 3 167 315 94 239 2.32e-59 191
MsG0280011282.01.T01 MTR_1g093240 62.667 150 53 2 167 315 78 225 2.10e-58 188
MsG0280011282.01.T01 MTR_1g040675 49.746 197 66 6 128 318 17 186 1.17e-51 169
MsG0280011282.01.T01 MTR_1g070830 57.419 155 41 4 161 315 73 202 2.23e-50 167
MsG0280011282.01.T01 MTR_1g076270 44.845 194 80 5 121 314 12 178 6.66e-46 154
MsG0280011282.01.T01 MTR_1g093350 44.845 194 80 5 121 314 12 178 6.66e-46 154
MsG0280011282.01.T01 MTR_6g488150 45.887 231 59 9 20 248 10 176 1.20e-45 154
MsG0280011282.01.T01 MTR_1g093240 60.156 128 48 2 167 293 78 203 3.03e-45 153
MsG0280011282.01.T01 MTR_5g067350 42.593 270 106 11 2 248 29 272 6.38e-45 155
MsG0280011282.01.T01 MTR_1g040675 47.093 172 58 6 128 293 17 161 5.79e-39 135
MsG0280011282.01.T01 MTR_1g069495 43.094 181 69 6 171 318 81 260 3.97e-33 124
MsG0280011282.01.T01 MTR_4g011880 48.649 148 46 3 170 317 52 169 1.24e-32 120
MsG0280011282.01.T01 MTR_2g100780 39.785 186 90 5 154 317 78 263 1.70e-31 119
MsG0280011282.01.T01 MTR_2g100780 38.298 188 96 4 154 321 78 265 3.91e-31 118
MsG0280011282.01.T01 MTR_8g014520 40.964 166 81 4 169 317 104 269 2.70e-29 114
MsG0280011282.01.T01 MTR_2g102490 50.435 115 44 4 206 316 86 191 4.50e-29 111
MsG0280011282.01.T01 MTR_8g014520 41.401 157 77 3 169 310 104 260 5.67e-29 112
MsG0280011282.01.T01 MTR_4g124300 34.899 149 64 7 166 308 60 181 2.63e-17 79.0
MsG0280011282.01.T01 MTR_3g106850 30.128 156 78 6 163 311 79 210 1.70e-16 77.4
MsG0280011282.01.T01 MTR_7g110790 39.423 104 49 3 204 307 66 155 5.00e-15 72.0
MsG0280011282.01.T01 MTR_1g085750 39.216 102 48 2 206 307 83 170 6.74e-15 72.0
MsG0280011282.01.T01 MTR_1g109510 30.137 146 80 4 163 307 44 168 5.68e-12 63.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0280011282.01.T01 AT2G22670 49.844 321 117 7 6 315 21 308 2.67e-95 286
MsG0280011282.01.T01 AT2G22670 49.844 321 117 7 6 315 21 308 2.67e-95 286
MsG0280011282.01.T01 AT4G29080 52.226 337 100 12 1 318 3 297 3.26e-95 285
MsG0280011282.01.T01 AT2G22670 49.688 320 117 7 6 314 21 307 1.77e-94 283
MsG0280011282.01.T01 AT2G22670 49.688 320 117 7 6 314 21 307 1.77e-94 283
MsG0280011282.01.T01 AT2G22670 49.688 320 117 7 6 314 38 324 2.32e-94 284
MsG0280011282.01.T01 AT5G65670 47.222 324 126 9 6 315 33 325 1.44e-84 259
MsG0280011282.01.T01 AT5G65670 47.222 324 126 9 6 315 33 325 1.86e-84 258
MsG0280011282.01.T01 AT4G14550 42.857 294 88 6 25 315 1 217 3.73e-64 203
MsG0280011282.01.T01 AT4G14550 42.662 293 88 6 25 314 1 216 1.29e-63 201
MsG0280011282.01.T01 AT3G04730 51.389 216 83 4 115 314 15 224 1.63e-61 196
MsG0280011282.01.T01 AT3G23050 40.134 299 98 8 25 315 6 231 2.59e-56 183
MsG0280011282.01.T01 AT1G04250 50.259 193 83 5 127 315 35 218 8.19e-53 174
MsG0280011282.01.T01 AT4G14550 39.706 272 84 6 25 293 1 195 6.39e-50 165
MsG0280011282.01.T01 AT1G04240 56.209 153 46 4 166 318 58 189 6.31e-49 162
MsG0280011282.01.T01 AT5G43700 51.705 176 59 6 140 315 33 182 3.54e-48 160
MsG0280011282.01.T01 AT1G04240 55.844 154 47 4 165 318 157 289 4.06e-48 164
MsG0280011282.01.T01 AT3G23030 49.162 179 56 5 139 314 24 170 1.34e-44 150
MsG0280011282.01.T01 AT3G23030 49.162 179 56 5 139 314 111 257 7.91e-44 151
MsG0280011282.01.T01 AT3G23050 37.545 277 92 8 25 293 6 209 3.91e-43 148
MsG0280011282.01.T01 AT1G52830 44.578 166 64 4 152 317 50 187 2.65e-41 142
MsG0280011282.01.T01 AT4G14560 53.374 163 45 4 150 311 32 164 1.41e-40 140
MsG0280011282.01.T01 AT3G15540 48.485 165 60 5 159 322 56 196 2.22e-39 138
MsG0280011282.01.T01 AT4G28640 44.571 175 77 5 157 315 72 242 4.34e-36 131
MsG0280011282.01.T01 AT4G28640 44.509 173 76 5 157 313 72 240 9.91e-36 130
MsG0280011282.01.T01 AT4G28640 44.509 173 76 5 157 313 72 240 5.80e-35 129
MsG0280011282.01.T01 AT1G15580 46.528 144 44 3 167 309 48 159 4.41e-34 123
MsG0280011282.01.T01 AT2G33310 38.830 188 90 2 149 317 53 234 1.05e-33 124
MsG0280011282.01.T01 AT2G33310 39.674 184 85 3 154 317 56 233 1.21e-33 124
MsG0280011282.01.T01 AT2G33310 39.674 184 85 3 154 317 56 233 1.21e-33 124
MsG0280011282.01.T01 AT3G16500 37.198 207 104 5 126 310 50 252 1.40e-31 119
MsG0280011282.01.T01 AT3G16500 37.198 207 104 5 126 310 50 252 1.75e-31 119
MsG0280011282.01.T01 AT1G04550 38.122 181 82 2 155 314 52 223 4.06e-31 117
MsG0280011282.01.T01 AT4G14550 35.841 226 67 5 25 247 1 151 2.33e-29 111
MsG0280011282.01.T01 AT1G04100 39.286 168 74 4 174 315 95 260 2.15e-28 111
MsG0280011282.01.T01 AT1G51950 38.012 171 82 3 160 310 84 250 5.24e-28 110
MsG0280011282.01.T01 AT5G25890 40.000 145 64 4 171 315 47 168 1.50e-25 101
MsG0280011282.01.T01 AT3G23050 32.900 231 76 7 25 247 6 165 5.07e-24 97.1
MsG0280011282.01.T01 AT3G17600 37.241 145 63 6 164 307 37 154 6.27e-21 88.2
MsG0280011282.01.T01 AT3G62100 42.574 101 43 2 207 307 83 168 4.50e-18 80.9
MsG0280011282.01.T01 AT2G46990 41.584 101 44 2 207 307 85 170 1.50e-17 79.7
MsG0280011282.01.T01 AT4G32280 35.644 101 45 2 207 307 118 198 2.81e-14 71.2
MsG0280011282.01.T01 AT4G32280 28.571 168 69 4 171 307 93 240 3.39e-14 71.6
MsG0280011282.01.T01 AT3G62100 41.379 87 36 2 207 293 83 154 2.81e-13 67.0
MsG0280011282.01.T01 AT2G46990 41.379 87 36 2 207 293 85 156 3.43e-13 67.0
MsG0280011282.01.T01 AT1G15050 36.190 105 51 1 208 312 62 150 8.15e-12 63.2
MsG0280011282.01.T01 AT1G15050 36.190 105 51 1 208 312 94 182 1.51e-11 62.8
MsG0280011282.01.T01 AT2G01200 34.127 126 63 2 187 312 83 188 1.79e-11 62.8
MsG0280011282.01.T01 AT2G01200 34.127 126 63 2 187 312 83 188 1.79e-11 62.8

Find 91 sgRNAs with CRISPR-Local

Find 143 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TACAAGGAAGTTTGAGTTTA+TGG 0.105721 2:-81907488 MsG0280011282.01.T01:three_prime_UTR
TTACACTCTAGATTTGTTTA+AGG 0.177148 2:-81907850 MsG0280011282.01.T01:CDS
TGCAATTCTCCTGGACTTCC+TGG 0.219552 2:-81908289 MsG0280011282.01.T01:CDS
TGCTTGTAGGTGATGTTCCT+TGG 0.297899 2:-81908177 MsG0280011282.01.T01:CDS
ATATCTTGTAATCTTTGATA+TGG 0.302244 2:-81907676 MsG0280011282.01.T01:three_prime_UTR
GATGCCATTGATGAGTCTTC+TGG 0.307952 2:-81909441 MsG0280011282.01.T01:CDS
GAAAAGAATAAACAGGTTAA+TGG 0.313899 2:-81909249 MsG0280011282.01.T01:CDS
TATCAGTGAATTCTCCTCTT+TGG 0.315505 2:+81907527 None:intergenic
CTGTAATAGGGCACAGGTTG+TGG 0.328430 2:-81908795 MsG0280011282.01.T01:intron
GCTTGTAGGTGATGTTCCTT+GGG 0.334696 2:-81908176 MsG0280011282.01.T01:CDS
CAAGACCTACAACAACTATA+TGG 0.360524 2:-81908624 MsG0280011282.01.T01:CDS
TCACTGATATGCATATATAA+AGG 0.364308 2:-81907513 MsG0280011282.01.T01:three_prime_UTR
AATGTTCTTCAAATCCTTGT+TGG 0.373464 2:+81909527 None:intergenic
TCTTTGAGGGATCTTCTTCA+TGG 0.378941 2:-81908244 MsG0280011282.01.T01:CDS
TTTGAACAATTTATGTAGTT+CGG 0.385174 2:-81907263 MsG0280011282.01.T01:three_prime_UTR
CCTATGTAATCATGTTCTAA+TGG 0.385937 2:+81909693 None:intergenic
ATCTTCTTCTCTCAACTTCA+AGG 0.387877 2:-81909640 MsG0280011282.01.T01:CDS
TTTAGTTAGTAGAATTCATC+TGG 0.388369 2:-81907396 MsG0280011282.01.T01:three_prime_UTR
TTGTGCACCTTTGAAGTTTG+TGG 0.392548 2:-81907326 MsG0280011282.01.T01:three_prime_UTR
TCTCTATGTAAAAGTCAGTA+TGG 0.396729 2:-81908678 MsG0280011282.01.T01:CDS
AAGTTCCATATAGTTGTTGT+AGG 0.402215 2:+81908619 None:intergenic
ATGAAAGGTTCCGAGGCAAT+TGG 0.411966 2:-81907888 MsG0280011282.01.T01:CDS
TTTCCAACATTCCCTCCTCT+TGG 0.421354 2:+81909366 None:intergenic
TTGATGAGTCTTCTGGGAAA+TGG 0.428366 2:-81909434 MsG0280011282.01.T01:CDS
TAAAATAAACAACAAAAGTC+TGG 0.436283 2:+81907772 None:intergenic
AGATCAACCTTTCTGAGATA+AGG 0.437164 2:+81908647 None:intergenic
ATGAAGATAAAGATGGAGAT+TGG 0.439416 2:-81908201 MsG0280011282.01.T01:CDS
CCTGGACTTCCTGGGAAAGA+TGG 0.446287 2:-81908280 MsG0280011282.01.T01:CDS
AAATATGTGTATATATTCTC+TGG 0.453827 2:+81907365 None:intergenic
ATGCCATTGATGAGTCTTCT+GGG 0.457749 2:-81909440 MsG0280011282.01.T01:CDS
TTTGTGGCTGTATAAAAGAA+TGG 0.458305 2:-81907310 MsG0280011282.01.T01:three_prime_UTR
TGTACATGAAAAGAATAAAC+AGG 0.460606 2:-81909256 MsG0280011282.01.T01:CDS
TGTAATAGGGCACAGGTTGT+GGG 0.465911 2:-81908794 MsG0280011282.01.T01:intron
GACTAAGTGAGAGCTCTTTG+AGG 0.466933 2:-81908258 MsG0280011282.01.T01:CDS
TCAGGTCAATGCAATTCTCC+TGG 0.470704 2:-81908298 MsG0280011282.01.T01:intron
TAATCTTTGATATGGATCAC+TGG 0.471892 2:-81907668 MsG0280011282.01.T01:three_prime_UTR
CAAGAGCCATGGGAAAATCT+AGG 0.474403 2:-81907581 MsG0280011282.01.T01:three_prime_UTR
CAATCTAATAATTGTAGTGC+GGG 0.475274 2:+81907702 None:intergenic
CCATCTTTCCCAGGAAGTCC+AGG 0.476059 2:+81908280 None:intergenic
TGAAAGGTTCCGAGGCAATT+GGG 0.483140 2:-81907887 MsG0280011282.01.T01:CDS
AAGAACCTTGTAGCTAGTGT+TGG 0.483602 2:-81909483 MsG0280011282.01.T01:CDS
CCGACTCGTGTAGGAGACTA+AGG 0.487592 2:-81907914 MsG0280011282.01.T01:CDS
TTTCGAAACGATCGAATTGG+TGG 0.491043 2:+81908767 None:intergenic
ACATAGAGACAGTCAAATCC+TGG 0.496327 2:+81908692 None:intergenic
TATACAGCCACAAACTTCAA+AGG 0.497093 2:+81907319 None:intergenic
GTTAGTACCAATGGTAAAGC+AGG 0.504295 2:+81908571 None:intergenic
TCAGTTGCTACTGCTGCTGC+TGG 0.505717 2:-81909567 MsG0280011282.01.T01:CDS
GATGGAGATTGGATGCTTGT+AGG 0.506785 2:-81908190 MsG0280011282.01.T01:CDS
CTATCAGGAGATTCACAACC+AGG 0.513603 2:+81909594 None:intergenic
GAGCTCAGACTAGGCTTACC+TGG 0.513881 2:-81909612 MsG0280011282.01.T01:CDS
TGGAGTTTCTCTATGAATGA+TGG 0.515427 2:-81909414 MsG0280011282.01.T01:CDS
TTTAGCAAATAATCCATCAA+TGG 0.515926 2:-81909670 MsG0280011282.01.T01:CDS
GCTAGTGTTGGAGCTAAAAG+AGG 0.516388 2:-81909471 MsG0280011282.01.T01:CDS
GTTGCTACTGCTGCTGCTGG+TGG 0.518150 2:-81909564 MsG0280011282.01.T01:CDS
TAGCTCCAACACTAGCTACA+AGG 0.519601 2:+81909478 None:intergenic
CCATTAGAACATGATTACAT+AGG 0.521656 2:-81909693 MsG0280011282.01.T01:CDS
GGTTCCGAGGCAATTGGGCT+AGG 0.522558 2:-81907882 MsG0280011282.01.T01:CDS
GATGAAGCTGAGGGAAAACC+AGG 0.522587 2:-81908710 MsG0280011282.01.T01:CDS
ATGTTCACCTGCTTTACCAT+TGG 0.525163 2:-81908578 MsG0280011282.01.T01:intron
TCTCCAAGAGGAGGGAATGT+TGG 0.528075 2:-81909369 MsG0280011282.01.T01:CDS
TCACTTAGTCCATCTTTCCC+AGG 0.528669 2:+81908271 None:intergenic
ACTAAGTGAGAGCTCTTTGA+GGG 0.537995 2:-81908257 MsG0280011282.01.T01:CDS
GCAATTCTCCTGGACTTCCT+GGG 0.538453 2:-81908288 MsG0280011282.01.T01:CDS
CTTACATATGAAGATAAAGA+TGG 0.540325 2:-81908208 MsG0280011282.01.T01:CDS
CATACCTAGCCCAATTGCCT+CGG 0.542842 2:+81907878 None:intergenic
GTTTGCAGCTCCAAGAGCCA+TGG 0.546429 2:-81907592 MsG0280011282.01.T01:three_prime_UTR
TATGTAAAAGTCAGTATGGA+TGG 0.548265 2:-81908674 MsG0280011282.01.T01:CDS
AGTCTCTTTCTTTGCCAACA+AGG 0.555451 2:-81909541 MsG0280011282.01.T01:CDS
AAAGAAACATACTTTGCAGC+AGG 0.558479 2:+81909204 None:intergenic
TGCATATATAAAGGTTTACA+AGG 0.561342 2:-81907504 MsG0280011282.01.T01:three_prime_UTR
TTTGCAGCTCCAAGAGCCAT+GGG 0.568102 2:-81907591 MsG0280011282.01.T01:three_prime_UTR
TCTATGAATGATGGATCTGA+AGG 0.572939 2:-81909405 MsG0280011282.01.T01:CDS
AAGGAAACTGAGCTCAGACT+AGG 0.575995 2:-81909621 MsG0280011282.01.T01:CDS
AAACTTCTGTAATAGGGCAC+AGG 0.579506 2:-81908801 MsG0280011282.01.T01:intron
TGGTGCTCCTTATCTCAGAA+AGG 0.583817 2:-81908654 MsG0280011282.01.T01:CDS
TTTCCCAGAAGACTCATCAA+TGG 0.587418 2:+81909437 None:intergenic
CTTTGTTCTCTCCAAGAGGA+GGG 0.588412 2:-81909377 MsG0280011282.01.T01:CDS
TGTCATCTTAACATATGTCG+AGG 0.597575 2:-81907747 MsG0280011282.01.T01:three_prime_UTR
AAAGAACAATGATGAAGCTG+AGG 0.598000 2:-81908720 MsG0280011282.01.T01:CDS
GCTTTGTTCTCTCCAAGAGG+AGG 0.598726 2:-81909378 MsG0280011282.01.T01:CDS
GGATGTTCGCCGACTCGTGT+AGG 0.604960 2:-81907923 MsG0280011282.01.T01:CDS
ACAATCTAATAATTGTAGTG+CGG 0.615550 2:+81907701 None:intergenic
CTAGCTACAAGGTTCTTCAA+AGG 0.626425 2:+81909489 None:intergenic
ATAGGGCACAGGTTGTGGGA+TGG 0.638025 2:-81908790 MsG0280011282.01.T01:intron
AAGAACAATGATGAAGCTGA+GGG 0.641734 2:-81908719 MsG0280011282.01.T01:CDS
GCTGCTTTGTTCTCTCCAAG+AGG 0.650123 2:-81909381 MsG0280011282.01.T01:CDS
CCTTAGTCTCCTACACGAGT+CGG 0.654169 2:+81907914 None:intergenic
AGGAGACTAAGGATCATGAA+AGG 0.662988 2:-81907903 MsG0280011282.01.T01:CDS
CTTGTAGGTGATGTTCCTTG+GGG 0.665765 2:-81908175 MsG0280011282.01.T01:CDS
AAGGATCATGAAAGGTTCCG+AGG 0.668062 2:-81907895 MsG0280011282.01.T01:CDS
TTGTAGGTGATGTTCCTTGG+GGG 0.698490 2:-81908174 MsG0280011282.01.T01:intron

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AAATTATTTACATGTGTTTT+AGG - Chr2:81908581-81908600 MsG0280011282.01.T01:CDS 15.0%
!!! AGTTTTTTGTTTGTTTTTTA+TGG - Chr2:81908029-81908048 MsG0280011282.01.T01:intron 15.0%
!!! GTTTTTTGTTTGTTTTTTAT+GGG - Chr2:81908030-81908049 MsG0280011282.01.T01:intron 15.0%
!!! TATTTGATATTTTTTCATCT+AGG - Chr2:81907326-81907345 MsG0280011282.01.T01:three_prime_UTR 15.0%
!! AAAAAAATCATGTCTATTCA+AGG + Chr2:81908077-81908096 None:intergenic 20.0%
!! AAAAAATCATGTCTATTCAA+GGG + Chr2:81908076-81908095 None:intergenic 20.0%
!! AAATATGTGTATATATTCTC+TGG + Chr2:81909696-81909715 None:intergenic 20.0%
!! AATAGTGGTTAATGAATATT+TGG - Chr2:81908173-81908192 MsG0280011282.01.T01:intron 20.0%
!! ATAGTGGTTAATGAATATTT+GGG - Chr2:81908174-81908193 MsG0280011282.01.T01:intron 20.0%
!! ATATCTTGTAATCTTTGATA+TGG - Chr2:81909382-81909401 MsG0280011282.01.T01:CDS 20.0%
!! CATGTATAATTCAAAAATAG+TGG - Chr2:81908158-81908177 MsG0280011282.01.T01:intron 20.0%
!! GTGTGTAAAAAATCAAAATA+AGG + Chr2:81908543-81908562 None:intergenic 20.0%
!! TAAAATAAACAACAAAAGTC+TGG + Chr2:81909289-81909308 None:intergenic 20.0%
!! TTTGAACAATTTATGTAGTT+CGG - Chr2:81909795-81909814 MsG0280011282.01.T01:five_prime_UTR 20.0%
!!! ATTTTACAGCAAGTAAAAAA+AGG + Chr2:81908565-81908584 None:intergenic 20.0%
!!! CACTATTTTTGAATTATACA+TGG + Chr2:81908160-81908179 None:intergenic 20.0%
!!! GTTACATATAGTTTTGATTT+TGG + Chr2:81909602-81909621 None:intergenic 20.0%
! AAAATCAAAATAAGGAGCTA+AGG + Chr2:81908535-81908554 None:intergenic 25.0%
! AATGTTGGAAAAAATCTTGT+TGG - Chr2:81907704-81907723 MsG0280011282.01.T01:three_prime_UTR 25.0%
! ACAATCTAATAATTGTAGTG+CGG + Chr2:81909360-81909379 None:intergenic 25.0%
! ATATTCGTATTCCTAAAATC+AGG - Chr2:81908742-81908761 MsG0280011282.01.T01:CDS 25.0%
! CAAAAAAAAGTAAACAGAAC+AGG + Chr2:81907925-81907944 None:intergenic 25.0%
! CTTACATATGAAGATAAAGA+TGG - Chr2:81908850-81908869 MsG0280011282.01.T01:intron 25.0%
! GAAAAGAATAAACAGGTTAA+TGG - Chr2:81907809-81907828 MsG0280011282.01.T01:exon 25.0%
! TAAGGTAAGTAATTTGAAGA+AGG + Chr2:81908517-81908536 None:intergenic 25.0%
! TCACTGATATGCATATATAA+AGG - Chr2:81909545-81909564 MsG0280011282.01.T01:CDS 25.0%
! TGCATATATAAAGGTTTACA+AGG - Chr2:81909554-81909573 MsG0280011282.01.T01:CDS 25.0%
! TGTACATGAAAAGAATAAAC+AGG - Chr2:81907802-81907821 MsG0280011282.01.T01:three_prime_UTR 25.0%
! TGTATCAAACTTCTGTAATA+GGG - Chr2:81908251-81908270 MsG0280011282.01.T01:CDS 25.0%
! TTGTATCAAACTTCTGTAAT+AGG - Chr2:81908250-81908269 MsG0280011282.01.T01:CDS 25.0%
! TTTAGCAAATAATCCATCAA+TGG - Chr2:81907388-81907407 MsG0280011282.01.T01:three_prime_UTR 25.0%
! TTTAGTTAGTAGAATTCATC+TGG - Chr2:81909662-81909681 MsG0280011282.01.T01:CDS 25.0%
!! TTACACTCTAGATTTGTTTA+AGG - Chr2:81909208-81909227 MsG0280011282.01.T01:intron 25.0%
!!! AAGTTGACTTATTTTGTCTT+TGG + Chr2:81908999-81909018 None:intergenic 25.0%
!!! ACATGATTTTTTTCTCTCTT+TGG - Chr2:81908084-81908103 MsG0280011282.01.T01:intron 25.0%
AAAAAAATAACTTACCCCCA+AGG + Chr2:81908901-81908920 None:intergenic 30.0%
AAGTTCCATATAGTTGTTGT+AGG + Chr2:81908442-81908461 None:intergenic 30.0%
AATGTTCTTCAAATCCTTGT+TGG + Chr2:81907534-81907553 None:intergenic 30.0%
AATTAACTGTGTAACCAAAC+AGG + Chr2:81908674-81908693 None:intergenic 30.0%
ATGAAGATAAAGATGGAGAT+TGG - Chr2:81908857-81908876 MsG0280011282.01.T01:intron 30.0%
CAATCTAATAATTGTAGTGC+GGG + Chr2:81909359-81909378 None:intergenic 30.0%
CAGCTTAATTAAGCACTTAT+AGG - Chr2:81908927-81908946 MsG0280011282.01.T01:intron 30.0%
CCATTAGAACATGATTACAT+AGG - Chr2:81907365-81907384 MsG0280011282.01.T01:three_prime_UTR 30.0%
CCTATGTAATCATGTTCTAA+TGG + Chr2:81907368-81907387 None:intergenic 30.0%
TAATCTTTGATATGGATCAC+TGG - Chr2:81909390-81909409 MsG0280011282.01.T01:CDS 30.0%
TATCTTATCTAGATCCTGTT+TGG - Chr2:81908657-81908676 MsG0280011282.01.T01:CDS 30.0%
TATGTAAAAGTCAGTATGGA+TGG - Chr2:81908384-81908403 MsG0280011282.01.T01:intron 30.0%
TCTCTATGTAAAAGTCAGTA+TGG - Chr2:81908380-81908399 MsG0280011282.01.T01:intron 30.0%
TGCAACAAAAAACATCAAAG+AGG - Chr2:81907766-81907785 MsG0280011282.01.T01:three_prime_UTR 30.0%
TTTGTGGCTGTATAAAAGAA+TGG - Chr2:81909748-81909767 MsG0280011282.01.T01:five_prime_UTR 30.0%
! AATCGGCTTAACTAAATTGT+TGG - Chr2:81909104-81909123 MsG0280011282.01.T01:intron 30.0%
! CTTTTGTTCATGTCATGTTT+TGG - Chr2:81907951-81907970 MsG0280011282.01.T01:intron 30.0%
! TACAAGGAAGTTTGAGTTTA+TGG - Chr2:81909570-81909589 MsG0280011282.01.T01:CDS 30.0%
!! AATTGCATTGACCTGATTTT+AGG + Chr2:81908756-81908775 None:intergenic 30.0%
!! AGCTTCAATATGAAAGTGTT+TGG + Chr2:81909055-81909074 None:intergenic 30.0%
!! GCTTCAATATGAAAGTGTTT+GGG + Chr2:81909054-81909073 None:intergenic 30.0%
!!! ATGGATCACTGGTTTTATAT+TGG - Chr2:81909401-81909420 MsG0280011282.01.T01:CDS 30.0%
!!! ATTTGGGTTGTTTTCAGAAA+AGG - Chr2:81908190-81908209 MsG0280011282.01.T01:CDS 30.0%
!!! TTTTTTCGAAACGATCGAAT+TGG + Chr2:81908297-81908316 None:intergenic 30.0%
AAAGAAACATACTTTGCAGC+AGG + Chr2:81907857-81907876 None:intergenic 35.0%
AAAGAACAATGATGAAGCTG+AGG - Chr2:81908338-81908357 MsG0280011282.01.T01:intron 35.0%
AAGAACAATGATGAAGCTGA+GGG - Chr2:81908339-81908358 MsG0280011282.01.T01:intron 35.0%
ATCGTTTCGAAAAAACACGA+TGG - Chr2:81908302-81908321 MsG0280011282.01.T01:intron 35.0%
ATCTTCTTCTCTCAACTTCA+AGG - Chr2:81907418-81907437 MsG0280011282.01.T01:three_prime_UTR 35.0%
CAAGACCTACAACAACTATA+TGG - Chr2:81908434-81908453 MsG0280011282.01.T01:intron 35.0%
CTTTCACCTTTGTCTAATCT+AGG + Chr2:81907980-81907999 None:intergenic 35.0%
GAAGGTAAAGTTAGTACCAA+TGG + Chr2:81908499-81908518 None:intergenic 35.0%
GTTAAATCGTGATAGTCCAA+TGG - Chr2:81909078-81909097 MsG0280011282.01.T01:intron 35.0%
TATACAGCCACAAACTTCAA+AGG + Chr2:81909742-81909761 None:intergenic 35.0%
TATCAGTGAATTCTCCTCTT+TGG + Chr2:81909534-81909553 None:intergenic 35.0%
TGATAGTCCAATGGTTGAAT+CGG - Chr2:81909087-81909106 MsG0280011282.01.T01:intron 35.0%
TGGAGTTTCTCTATGAATGA+TGG - Chr2:81907644-81907663 MsG0280011282.01.T01:three_prime_UTR 35.0%
TGGTTACCTAGATTAGACAA+AGG - Chr2:81907971-81907990 MsG0280011282.01.T01:intron 35.0%
TGTCATCTTAACATATGTCG+AGG - Chr2:81909311-81909330 MsG0280011282.01.T01:CDS 35.0%
TTACATGAGAAAGTCAAGCT+AGG + Chr2:81908616-81908635 None:intergenic 35.0%
! ACTAAATTGTTGGTTGATGC+AGG - Chr2:81909114-81909133 MsG0280011282.01.T01:intron 35.0%
! GAAGATGTTTTGTCCATTGA+TGG + Chr2:81907404-81907423 None:intergenic 35.0%
!! AGATCAACCTTTCTGAGATA+AGG + Chr2:81908414-81908433 None:intergenic 35.0%
!! GTAGCAACTGATTTTCTATC+AGG + Chr2:81907482-81907501 None:intergenic 35.0%
!! TCTATGAATGATGGATCTGA+AGG - Chr2:81907653-81907672 MsG0280011282.01.T01:three_prime_UTR 35.0%
!!! GAGTTTTTCTGGACTAGTTT+TGG + Chr2:81909505-81909524 None:intergenic 35.0%
AAAAACTCGTTGGACCAAAG+AGG - Chr2:81909517-81909536 MsG0280011282.01.T01:CDS 40.0%
AAACTTCTGTAATAGGGCAC+AGG - Chr2:81908257-81908276 MsG0280011282.01.T01:CDS 40.0%
AAGAACCTTGTAGCTAGTGT+TGG - Chr2:81907575-81907594 MsG0280011282.01.T01:three_prime_UTR 40.0%
ACATAGAGACAGTCAAATCC+TGG + Chr2:81908369-81908388 None:intergenic 40.0%
ACTAAGTGAGAGCTCTTTGA+GGG - Chr2:81908801-81908820 MsG0280011282.01.T01:intron 40.0%
ACTAGTCCAGAAAAACTCGT+TGG - Chr2:81909507-81909526 MsG0280011282.01.T01:CDS 40.0%
AGGAGACTAAGGATCATGAA+AGG - Chr2:81909155-81909174 MsG0280011282.01.T01:intron 40.0%
AGTCTCTTTCTTTGCCAACA+AGG - Chr2:81907517-81907536 MsG0280011282.01.T01:three_prime_UTR 40.0%
ATGCCATTGATGAGTCTTCT+GGG - Chr2:81907618-81907637 MsG0280011282.01.T01:three_prime_UTR 40.0%
ATGTTCACCTGCTTTACCAT+TGG - Chr2:81908480-81908499 MsG0280011282.01.T01:intron 40.0%
CTAGCTACAAGGTTCTTCAA+AGG + Chr2:81907572-81907591 None:intergenic 40.0%
GTTAGTACCAATGGTAAAGC+AGG + Chr2:81908490-81908509 None:intergenic 40.0%
TTTCCCAGAAGACTCATCAA+TGG + Chr2:81907624-81907643 None:intergenic 40.0%
TTTCGAAACGATCGAATTGG+TGG + Chr2:81908294-81908313 None:intergenic 40.0%
! AGTTAAGCCGATTCAACCAT+TGG + Chr2:81909097-81909116 None:intergenic 40.0%
! TCTTTGAGGGATCTTCTTCA+TGG - Chr2:81908814-81908833 MsG0280011282.01.T01:intron 40.0%
! TTGATGAGTCTTCTGGGAAA+TGG - Chr2:81907624-81907643 MsG0280011282.01.T01:three_prime_UTR 40.0%
! TTTGGTCCAACGAGTTTTTC+TGG + Chr2:81909516-81909535 None:intergenic 40.0%
!! TTGTGCACCTTTGAAGTTTG+TGG - Chr2:81909732-81909751 MsG0280011282.01.T01:five_prime_UTR 40.0%
AAGGAAACTGAGCTCAGACT+AGG - Chr2:81907437-81907456 MsG0280011282.01.T01:three_prime_UTR 45.0%
AAGGATCATGAAAGGTTCCG+AGG - Chr2:81909163-81909182 MsG0280011282.01.T01:intron 45.0%
ATGAAAGGTTCCGAGGCAAT+TGG - Chr2:81909170-81909189 MsG0280011282.01.T01:intron 45.0%
CAAGAGCCATGGGAAAATCT+AGG - Chr2:81909477-81909496 MsG0280011282.01.T01:CDS 45.0%
CTATCAGGAGATTCACAACC+AGG + Chr2:81907467-81907486 None:intergenic 45.0%
CTTGTAGGTGATGTTCCTTG+GGG - Chr2:81908883-81908902 MsG0280011282.01.T01:intron 45.0%
CTTTGTTCTCTCCAAGAGGA+GGG - Chr2:81907681-81907700 MsG0280011282.01.T01:three_prime_UTR 45.0%
GACTAAGTGAGAGCTCTTTG+AGG - Chr2:81908800-81908819 MsG0280011282.01.T01:intron 45.0%
GATGCCATTGATGAGTCTTC+TGG - Chr2:81907617-81907636 MsG0280011282.01.T01:three_prime_UTR 45.0%
GATGGAGATTGGATGCTTGT+AGG - Chr2:81908868-81908887 MsG0280011282.01.T01:intron 45.0%
GCTTGTAGGTGATGTTCCTT+GGG - Chr2:81908882-81908901 MsG0280011282.01.T01:intron 45.0%
TAGCTCCAACACTAGCTACA+AGG + Chr2:81907583-81907602 None:intergenic 45.0%
TCACTTAGTCCATCTTTCCC+AGG + Chr2:81908790-81908809 None:intergenic 45.0%
TCAGGTCAATGCAATTCTCC+TGG - Chr2:81908760-81908779 MsG0280011282.01.T01:CDS 45.0%
TGAAAGGTTCCGAGGCAATT+GGG - Chr2:81909171-81909190 MsG0280011282.01.T01:intron 45.0%
TGCTTGTAGGTGATGTTCCT+TGG - Chr2:81908881-81908900 MsG0280011282.01.T01:intron 45.0%
TGGTGCTCCTTATCTCAGAA+AGG - Chr2:81908404-81908423 MsG0280011282.01.T01:intron 45.0%
TGTAATAGGGCACAGGTTGT+GGG - Chr2:81908264-81908283 MsG0280011282.01.T01:CDS 45.0%
TTGTAGGTGATGTTCCTTGG+GGG - Chr2:81908884-81908903 MsG0280011282.01.T01:intron 45.0%
TTTCCAACATTCCCTCCTCT+TGG + Chr2:81907695-81907714 None:intergenic 45.0%
! CTAGATTTTCCCATGGCTCT+TGG + Chr2:81909479-81909498 None:intergenic 45.0%
! GCTAGTGTTGGAGCTAAAAG+AGG - Chr2:81907587-81907606 MsG0280011282.01.T01:three_prime_UTR 45.0%
! TTGGCTCCTAGATTTTCCCA+TGG + Chr2:81909486-81909505 None:intergenic 45.0%
CATACCTAGCCCAATTGCCT+CGG + Chr2:81909183-81909202 None:intergenic 50.0%
CCTTAGTCTCCTACACGAGT+CGG + Chr2:81909147-81909166 None:intergenic 50.0%
CTGTAATAGGGCACAGGTTG+TGG - Chr2:81908263-81908282 MsG0280011282.01.T01:CDS 50.0%
GATGAAGCTGAGGGAAAACC+AGG - Chr2:81908348-81908367 MsG0280011282.01.T01:intron 50.0%
GCAATTCTCCTGGACTTCCT+GGG - Chr2:81908770-81908789 MsG0280011282.01.T01:CDS 50.0%
TCTCCAAGAGGAGGGAATGT+TGG - Chr2:81907689-81907708 MsG0280011282.01.T01:three_prime_UTR 50.0%
TGCAATTCTCCTGGACTTCC+TGG - Chr2:81908769-81908788 MsG0280011282.01.T01:CDS 50.0%
TTTGCAGCTCCAAGAGCCAT+GGG - Chr2:81909467-81909486 MsG0280011282.01.T01:CDS 50.0%
! GCTGCTTTGTTCTCTCCAAG+AGG - Chr2:81907677-81907696 MsG0280011282.01.T01:three_prime_UTR 50.0%
! GCTTTGTTCTCTCCAAGAGG+AGG - Chr2:81907680-81907699 MsG0280011282.01.T01:three_prime_UTR 50.0%
ATAGGGCACAGGTTGTGGGA+TGG - Chr2:81908268-81908287 MsG0280011282.01.T01:CDS 55.0%
CCATCTTTCCCAGGAAGTCC+AGG + Chr2:81908781-81908800 None:intergenic 55.0%
CCTGGACTTCCTGGGAAAGA+TGG - Chr2:81908778-81908797 MsG0280011282.01.T01:CDS 55.0%
GAGCTCAGACTAGGCTTACC+TGG - Chr2:81907446-81907465 MsG0280011282.01.T01:three_prime_UTR 55.0%
GTTTGCAGCTCCAAGAGCCA+TGG - Chr2:81909466-81909485 MsG0280011282.01.T01:CDS 55.0%
TCAGTTGCTACTGCTGCTGC+TGG - Chr2:81907491-81907510 MsG0280011282.01.T01:three_prime_UTR 55.0%
! CCGACTCGTGTAGGAGACTA+AGG - Chr2:81909144-81909163 MsG0280011282.01.T01:intron 55.0%
GGTTCCGAGGCAATTGGGCT+AGG - Chr2:81909176-81909195 MsG0280011282.01.T01:intron 60.0%
GTTGCTACTGCTGCTGCTGG+TGG - Chr2:81907494-81907513 MsG0280011282.01.T01:three_prime_UTR 60.0%
!! GGATGTTCGCCGACTCGTGT+AGG - Chr2:81909135-81909154 MsG0280011282.01.T01:intron 60.0%
Chromosome Type Strat End Strand Name
Chr2 gene 81907226 81909854 81907226 ID=MsG0280011282.01;Name=MsG0280011282.01
Chr2 mRNA 81907226 81909854 81907226 ID=MsG0280011282.01.T01;Parent=MsG0280011282.01;Name=MsG0280011282.01.T01;_AED=0.20;_eAED=0.20;_QI=130|1|1|1|1|1|4|598|333
Chr2 exon 81907226 81907944 81907226 ID=MsG0280011282.01.T01:exon:12276;Parent=MsG0280011282.01.T01
Chr2 exon 81908175 81908316 81908175 ID=MsG0280011282.01.T01:exon:12275;Parent=MsG0280011282.01.T01
Chr2 exon 81908579 81908808 81908579 ID=MsG0280011282.01.T01:exon:12274;Parent=MsG0280011282.01.T01
Chr2 exon 81909216 81909854 81909216 ID=MsG0280011282.01.T01:exon:12273;Parent=MsG0280011282.01.T01
Chr2 five_prime_UTR 81909725 81909854 81909725 ID=MsG0280011282.01.T01:five_prime_utr;Parent=MsG0280011282.01.T01
Chr2 CDS 81909216 81909724 81909216 ID=MsG0280011282.01.T01:cds;Parent=MsG0280011282.01.T01
Chr2 CDS 81908579 81908808 81908579 ID=MsG0280011282.01.T01:cds;Parent=MsG0280011282.01.T01
Chr2 CDS 81908175 81908316 81908175 ID=MsG0280011282.01.T01:cds;Parent=MsG0280011282.01.T01
Chr2 CDS 81907824 81907944 81907824 ID=MsG0280011282.01.T01:cds;Parent=MsG0280011282.01.T01
Chr2 three_prime_UTR 81907226 81907823 81907226 ID=MsG0280011282.01.T01:three_prime_utr;Parent=MsG0280011282.01.T01
Gene Sequence

>MsG0280011282.01.T01

ATGTCTACACCATTAGAACATGATTACATAGGTTTAGCAAATAATCCATCAATGGACAAAACATCTTCTTCTCTCAACTTCAAGGAAACTGAGCTCAGACTAGGCTTACCTGGTTGTGAATCTCCTGATAGAAAATCAGTTGCTACTGCTGCTGCTGGTGGAGTCTCTTTCTTTGCCAACAAGGATTTGAAGAACATTAATGTTTGTTCTTCTCCTTTGAAGAACCTTGTAGCTAGTGTTGGAGCTAAAAGAGGTTTCTCTGATGCCATTGATGAGTCTTCTGGGAAATGGAGTTTCTCTATGAATGATGGATCTGAAGGAGCTGCTTTGTTCTCTCCAAGAGGAGGGAATGTTGGAAAAAATCTTGTTGGTTTAGAGACTCAAACTAATATTCAGAAGATTAATACAAATGCAACAAAAAACATCAAAGAGGTTCTTCATCAATCTGTACATGAAAAGAATAAACAGGTTAATGGAACAAATGAGCATGCTAATGCTCCTGCTGCAAAGGCACAGGTTGTGGGATGGCCACCAATTCGATCGTTTCGAAAAAACACGATGGCGTCTAATTTGTCAAAGAACAATGATGAAGCTGAGGGAAAACCAGGATTTGACTGTCTCTATGTAAAAGTCAGTATGGATGGTGCTCCTTATCTCAGAAAGGTTGATCTCAAGACCTACAACAACTATATGGAACTTTCTTCAGCTCTTGAGAAGATGTTCACCTGCTTTACCATTGGTCAATGCAATTCTCCTGGACTTCCTGGGAAAGATGGACTAAGTGAGAGCTCTTTGAGGGATCTTCTTCATGGATCTGAATATGTTCTTACATATGAAGATAAAGATGGAGATTGGATGCTTGTAGGTGATGTTCCTTGGGGGATGTTCGCCGACTCGTGTAGGAGACTAAGGATCATGAAAGGTTCCGAGGCAATTGGGCTAGGTATGAAAGTTTACACTCTAGATTTGTTTAAGGAAGTTGTTGACAAATTATTGCATTAA

Protein sequence

>MsG0280011282.01.T01

MSTPLEHDYIGLANNPSMDKTSSSLNFKETELRLGLPGCESPDRKSVATAAAGGVSFFANKDLKNINVCSSPLKNLVASVGAKRGFSDAIDESSGKWSFSMNDGSEGAALFSPRGGNVGKNLVGLETQTNIQKINTNATKNIKEVLHQSVHEKNKQVNGTNEHANAPAAKAQVVGWPPIRSFRKNTMASNLSKNNDEAEGKPGFDCLYVKVSMDGAPYLRKVDLKTYNNYMELSSALEKMFTCFTIGQCNSPGLPGKDGLSESSLRDLLHGSEYVLTYEDKDGDWMLVGDVPWGMFADSCRRLRIMKGSEAIGLGMKVYTLDLFKEVVDKLLH*