Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0180004547.01.T01 | XP_003591056.1 | 83.618 | 293 | 6 | 3 | 1 | 252 | 1 | 292 | 5.56E-172 | 486 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0180004547.01.T01 | Q9MAA2 | 60.37 | 270 | 67 | 1 | 3 | 232 | 7 | 276 | 3.38E-115 | 335 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MsG0180004547.01 | MsG0180004562.01 | 0.808384 | 3.180787e-50 | 1.816187e-47 |
| MsG0180004547.01 | MsG0180005272.01 | 0.823862 | 1.101852e-53 | 9.602357e-51 |
| MsG0180004547.01 | MsG0480022592.01 | 0.810633 | 1.046248e-50 | 6.339474e-48 |
| MsG0180004547.01 | MsG0580028999.01 | 0.819552 | 1.093707e-52 | 8.443168e-50 |
| MsG0180004547.01 | MsG0780039840.01 | 0.820680 | 6.036007e-53 | 4.807823e-50 |
| MsG0180004547.01 | MsG0880044570.01 | 0.837187 | 6.026261e-57 | 7.767745e-54 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0180004547.01.T01 | MTR_1g082360 | 83.618 | 293 | 6 | 3 | 1 | 252 | 1 | 292 | 6.73e-176 | 486 |
| MsG0180004547.01.T01 | MTR_7g113920 | 58.947 | 285 | 74 | 2 | 2 | 246 | 34 | 315 | 2.99e-120 | 346 |
| MsG0180004547.01.T01 | MTR_5g010090 | 41.948 | 267 | 111 | 4 | 5 | 229 | 82 | 346 | 6.48e-65 | 206 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0180004547.01.T01 | AT3G05170 | 60.370 | 270 | 67 | 1 | 3 | 232 | 7 | 276 | 3.45e-116 | 335 |
| MsG0180004547.01.T01 | AT1G08940 | 56.679 | 277 | 74 | 4 | 3 | 235 | 7 | 281 | 4.73e-106 | 308 |
Find 84 sgRNAs with CRISPR-Local
Find 101 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTTCAGTTTCACCTTCATTT+TGG | 0.169991 | 1:-79461794 | None:intergenic |
| TTTCGGAAACTGCGAGTTTC+GGG | 0.182047 | 1:+79461560 | MsG0180004547.01.T01:CDS |
| ACTAATAAGTAACTAATTAA+AGG | 0.229674 | 1:+79461831 | MsG0180004547.01.T01:exon |
| CGCATTAGGATTATCCTCTT+TGG | 0.271933 | 1:-79460890 | None:intergenic |
| GACGCCGATCACGCGCTTCT+TGG | 0.272814 | 1:-79461137 | None:intergenic |
| CTAATTAAAGGGGAATTTAT+AGG | 0.274139 | 1:+79461843 | MsG0180004547.01.T01:three_prime_UTR |
| TTTGAGCATCTAAACAATTT+CGG | 0.293790 | 1:+79461543 | MsG0180004547.01.T01:CDS |
| AATCTCCGCCGTCTCGTTTC+CGG | 0.313382 | 1:+79461022 | MsG0180004547.01.T01:CDS |
| ATTTCGGAAACTGCGAGTTT+CGG | 0.331893 | 1:+79461559 | MsG0180004547.01.T01:CDS |
| CGCCGTCTCGTTTCCGGCCA+AGG | 0.340582 | 1:+79461028 | MsG0180004547.01.T01:CDS |
| GAGATTGGCGCCGGCGTGGC+GGG | 0.342893 | 1:-79461005 | None:intergenic |
| AGAATCGCGCGTACGTGAAC+AGG | 0.355351 | 1:+79461165 | MsG0180004547.01.T01:CDS |
| GATAACCTTTGATTGATTGT+AGG | 0.356988 | 1:+79461882 | MsG0180004547.01.T01:three_prime_UTR |
| CTAATAAGTAACTAATTAAA+GGG | 0.365006 | 1:+79461832 | MsG0180004547.01.T01:exon |
| TGTGGACCGGGTGCGGGCGT+AGG | 0.374827 | 1:-79461089 | None:intergenic |
| AAGGTTATCTTATCATCAAT+TGG | 0.379933 | 1:-79461868 | None:intergenic |
| CAATGTCCTTGGTATCTTGA+TGG | 0.384985 | 1:+79461723 | MsG0180004547.01.T01:CDS |
| GCCAGTCAGGGGAGCAGCCT+TGG | 0.397485 | 1:-79461045 | None:intergenic |
| ACCAGATTTAAATCGTTAGT+TGG | 0.398319 | 1:-79461453 | None:intergenic |
| GGGACTCGCCGTGACGCATT+AGG | 0.399807 | 1:-79460904 | None:intergenic |
| GCCAAGGCTGCTCCCCTGAC+TGG | 0.403767 | 1:+79461044 | MsG0180004547.01.T01:CDS |
| CTGACGTGTCAAGGTTTCCT+TGG | 0.403844 | 1:-79460925 | None:intergenic |
| CACGGAGTGTGGACCGGGTG+CGG | 0.410340 | 1:-79461096 | None:intergenic |
| TATGTAATAATCATAATTTA+CGG | 0.419568 | 1:+79461946 | MsG0180004547.01.T01:three_prime_UTR |
| CGGAAGAAGAGATGCTTGAA+TGG | 0.421203 | 1:+79461631 | MsG0180004547.01.T01:CDS |
| TAGAAGTAGAGACGCCAGTC+AGG | 0.422292 | 1:-79461058 | None:intergenic |
| GTGGACCGGGTGCGGGCGTA+GGG | 0.432905 | 1:-79461088 | None:intergenic |
| GTCAGGGGAGCAGCCTTGGC+CGG | 0.437420 | 1:-79461041 | None:intergenic |
| TCCAACTAACGATTTAAATC+TGG | 0.438023 | 1:+79461452 | MsG0180004547.01.T01:CDS |
| CGCGTACGTGAACAGGATTT+CGG | 0.438914 | 1:+79461172 | MsG0180004547.01.T01:CDS |
| GGAAACGAGACGGCGGAGAT+TGG | 0.440959 | 1:-79461020 | None:intergenic |
| GGAAGAAGAGATGCTTGAAT+GGG | 0.451438 | 1:+79461632 | MsG0180004547.01.T01:CDS |
| TGACGTGTCAAGGTTTCCTT+GGG | 0.454163 | 1:-79460924 | None:intergenic |
| ACGGAGTGTGGACCGGGTGC+GGG | 0.458435 | 1:-79461095 | None:intergenic |
| GCTTGAATGGGGAATGTCTC+CGG | 0.465250 | 1:+79461644 | MsG0180004547.01.T01:CDS |
| ATATGATTGCTGATCAGAAA+TGG | 0.466739 | 1:+79461667 | MsG0180004547.01.T01:CDS |
| GGAGATTGGCGCCGGCGTGG+CGG | 0.473230 | 1:-79461006 | None:intergenic |
| TTCTGATCAGCAATCATATC+CGG | 0.479044 | 1:-79461663 | None:intergenic |
| AACTTCACGGAGTGTGGACC+GGG | 0.484362 | 1:-79461101 | None:intergenic |
| GTTAACTGAATGCTGTGGTC+TGG | 0.485756 | 1:-79460962 | None:intergenic |
| AAACTGCGAGTTTCGGGTGA+TGG | 0.492323 | 1:+79461566 | MsG0180004547.01.T01:CDS |
| GTGGCGGGCTTGTGCGATGC+CGG | 0.494843 | 1:-79460990 | None:intergenic |
| AGCATTCAGTTAACTCCATC+CGG | 0.508794 | 1:+79460971 | MsG0180004547.01.T01:CDS |
| CGGGTGATGGAGCAAGGGAG+TGG | 0.510953 | 1:+79461579 | MsG0180004547.01.T01:CDS |
| CAGTTTGGCGATTAATCATA+CGG | 0.511425 | 1:+79461611 | MsG0180004547.01.T01:CDS |
| ATCGCACAAGCCCGCCACGC+CGG | 0.513724 | 1:+79460995 | MsG0180004547.01.T01:CDS |
| TTCTCCAAGAAGCGCGTGAT+CGG | 0.514170 | 1:+79461133 | MsG0180004547.01.T01:CDS |
| TCTCTCCCTACGCCCGCACC+CGG | 0.515505 | 1:+79461083 | MsG0180004547.01.T01:CDS |
| CAACTTCACGGAGTGTGGAC+CGG | 0.516011 | 1:-79461102 | None:intergenic |
| CGGGCTTGTGCGATGCCGGA+TGG | 0.517406 | 1:-79460986 | None:intergenic |
| GGCGGAGATTGGCGCCGGCG+TGG | 0.518194 | 1:-79461009 | None:intergenic |
| GATGAAGCAATCCAAAATGA+AGG | 0.532371 | 1:+79461783 | MsG0180004547.01.T01:CDS |
| AATGCTGTGGTCTGGTGTGG+TGG | 0.541324 | 1:-79460954 | None:intergenic |
| GAGTTTCGGGTGATGGAGCA+AGG | 0.542115 | 1:+79461573 | MsG0180004547.01.T01:CDS |
| GAGTGGTGGAGAATACAGTT+TGG | 0.544566 | 1:+79461596 | MsG0180004547.01.T01:CDS |
| AGAAGTAGAGACGCCAGTCA+GGG | 0.558329 | 1:-79461057 | None:intergenic |
| GTGATGGAGCAAGGGAGTGG+TGG | 0.558690 | 1:+79461582 | MsG0180004547.01.T01:CDS |
| AAGCCATTCTATACTTGTGT+TGG | 0.563262 | 1:+79461911 | MsG0180004547.01.T01:three_prime_UTR |
| TCTACCAACTTCACGGAGTG+TGG | 0.563838 | 1:-79461107 | None:intergenic |
| GAGACGGCGGAGATTGGCGC+CGG | 0.564282 | 1:-79461014 | None:intergenic |
| CTGAATGCTGTGGTCTGGTG+TGG | 0.565165 | 1:-79460957 | None:intergenic |
| TGATCATTCCAAGCACCTCT+AGG | 0.566827 | 1:-79461702 | None:intergenic |
| ATACCAACACAAGTATAGAA+TGG | 0.569770 | 1:-79461914 | None:intergenic |
| CAGATGCGCCTAGAGGTGCT+TGG | 0.570632 | 1:+79461694 | MsG0180004547.01.T01:CDS |
| CTTGGAATGATCAATGTCCT+TGG | 0.578748 | 1:+79461712 | MsG0180004547.01.T01:CDS |
| TCTTGATGAAGTGGTTCAAG+TGG | 0.585341 | 1:+79461508 | MsG0180004547.01.T01:CDS |
| CGGTCCACACTCCGTGAAGT+TGG | 0.587452 | 1:+79461103 | MsG0180004547.01.T01:CDS |
| TGGTGTATGCTGACGTGTCA+AGG | 0.588203 | 1:-79460934 | None:intergenic |
| ATGCGTCACGGCGAGTCCCA+AGG | 0.590385 | 1:+79460908 | MsG0180004547.01.T01:CDS |
| AGAAAGATCTACCAACTTCA+CGG | 0.598186 | 1:-79461114 | None:intergenic |
| AGCCTTGGCCGGAAACGAGA+CGG | 0.598321 | 1:-79461030 | None:intergenic |
| GTAAACCTACAATCAATCAA+AGG | 0.599275 | 1:-79461887 | None:intergenic |
| GAAGTAGAGACGCCAGTCAG+GGG | 0.613104 | 1:-79461056 | None:intergenic |
| AAATGGGTGTGCTTCCAAAG+AGG | 0.650418 | 1:+79460876 | None:intergenic |
| AGTTTCGGGTGATGGAGCAA+GGG | 0.652564 | 1:+79461574 | MsG0180004547.01.T01:CDS |
| TAATAAGTAACTAATTAAAG+GGG | 0.657691 | 1:+79461833 | MsG0180004547.01.T01:exon |
| TGGCGTGCAGATGCGCCTAG+AGG | 0.658589 | 1:+79461687 | MsG0180004547.01.T01:CDS |
| GAAGAAGAGATGCTTGAATG+GGG | 0.659893 | 1:+79461633 | MsG0180004547.01.T01:CDS |
| AGGATAATCCTAATGCGTCA+CGG | 0.674661 | 1:+79460896 | MsG0180004547.01.T01:CDS |
| CTTGGCCGGAAACGAGACGG+CGG | 0.676638 | 1:-79461027 | None:intergenic |
| GATGAAGTGGTTCAAGTGGA+CGG | 0.691694 | 1:+79461512 | MsG0180004547.01.T01:CDS |
| ATGGAGTTAACTGAATGCTG+TGG | 0.708629 | 1:-79460967 | None:intergenic |
| AATCTGGTGATAGTATCACA+CGG | 0.716063 | 1:+79461468 | MsG0180004547.01.T01:CDS |
| GAAGTGGTTCAAGTGGACGG+TGG | 0.719720 | 1:+79461515 | MsG0180004547.01.T01:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TATGTAATAATCATAATTTA+CGG | + | Chr1:79461946-79461965 | MsG0180004547.01.T01:three_prime_UTR | 10.0% |
| !! | ACTAATAAGTAACTAATTAA+AGG | + | Chr1:79461831-79461850 | MsG0180004547.01.T01:exon | 15.0% |
| !! | CTAATAAGTAACTAATTAAA+GGG | + | Chr1:79461832-79461851 | MsG0180004547.01.T01:exon | 15.0% |
| !! | TAATAAGTAACTAATTAAAG+GGG | + | Chr1:79461833-79461852 | MsG0180004547.01.T01:exon | 15.0% |
| !! | AGATTCAAAAAAACCTAAAT+AGG | - | Chr1:79461394-79461413 | None:intergenic | 20.0% |
| !! | ATTTGAATTTCTTCCTATTT+AGG | + | Chr1:79461378-79461397 | MsG0180004547.01.T01:intron | 20.0% |
| !!! | TAGGTTTTTTTGAATCTTTA+TGG | + | Chr1:79461397-79461416 | MsG0180004547.01.T01:intron | 20.0% |
| ! | AAGGTTATCTTATCATCAAT+TGG | - | Chr1:79461871-79461890 | None:intergenic | 25.0% |
| ! | CTAATTAAAGGGGAATTTAT+AGG | + | Chr1:79461843-79461862 | MsG0180004547.01.T01:three_prime_UTR | 25.0% |
| ! | TTTGAGCATCTAAACAATTT+CGG | + | Chr1:79461543-79461562 | MsG0180004547.01.T01:CDS | 25.0% |
| AAAAAACCATCAAGATACCA+AGG | - | Chr1:79461732-79461751 | None:intergenic | 30.0% | |
| ACCAGATTTAAATCGTTAGT+TGG | - | Chr1:79461456-79461475 | None:intergenic | 30.0% | |
| ATACCAACACAAGTATAGAA+TGG | - | Chr1:79461917-79461936 | None:intergenic | 30.0% | |
| ATATGATTGCTGATCAGAAA+TGG | + | Chr1:79461667-79461686 | MsG0180004547.01.T01:CDS | 30.0% | |
| GATAACCTTTGATTGATTGT+AGG | + | Chr1:79461882-79461901 | MsG0180004547.01.T01:three_prime_UTR | 30.0% | |
| GTAAACCTACAATCAATCAA+AGG | - | Chr1:79461890-79461909 | None:intergenic | 30.0% | |
| TCCAACTAACGATTTAAATC+TGG | + | Chr1:79461452-79461471 | MsG0180004547.01.T01:CDS | 30.0% | |
| TCGATTAGAATGATTTCAGA+AGG | - | Chr1:79461328-79461347 | None:intergenic | 30.0% | |
| TTGTTAAAGAAACTCGTGAA+CGG | + | Chr1:79461224-79461243 | MsG0180004547.01.T01:intron | 30.0% | |
| ! | TTTCAGTTTCACCTTCATTT+TGG | - | Chr1:79461797-79461816 | None:intergenic | 30.0% |
| AAGCCATTCTATACTTGTGT+TGG | + | Chr1:79461911-79461930 | MsG0180004547.01.T01:three_prime_UTR | 35.0% | |
| AATCTGGTGATAGTATCACA+CGG | + | Chr1:79461468-79461487 | MsG0180004547.01.T01:CDS | 35.0% | |
| AGAAAGATCTACCAACTTCA+CGG | - | Chr1:79461117-79461136 | None:intergenic | 35.0% | |
| ATGATTTCAGAAGGAGAAAG+CGG | - | Chr1:79461319-79461338 | None:intergenic | 35.0% | |
| CAGTTTGGCGATTAATCATA+CGG | + | Chr1:79461611-79461630 | MsG0180004547.01.T01:CDS | 35.0% | |
| GATGAAGCAATCCAAAATGA+AGG | + | Chr1:79461783-79461802 | MsG0180004547.01.T01:CDS | 35.0% | |
| TTCTGATCAGCAATCATATC+CGG | - | Chr1:79461666-79461685 | None:intergenic | 35.0% | |
| ! | CACGAATTTTCTTGATGAAG+TGG | + | Chr1:79461499-79461518 | MsG0180004547.01.T01:CDS | 35.0% |
| ! | TTCTTTTATCGCTTTCCTGA+AGG | + | Chr1:79461255-79461274 | MsG0180004547.01.T01:intron | 35.0% |
| AAAGAAACTCGTGAACGGTT+GGG | + | Chr1:79461229-79461248 | MsG0180004547.01.T01:intron | 40.0% | |
| AGCATTCAGTTAACTCCATC+CGG | + | Chr1:79460971-79460990 | MsG0180004547.01.T01:CDS | 40.0% | |
| AGGATAATCCTAATGCGTCA+CGG | + | Chr1:79460896-79460915 | MsG0180004547.01.T01:CDS | 40.0% | |
| ATGGAGTTAACTGAATGCTG+TGG | - | Chr1:79460970-79460989 | None:intergenic | 40.0% | |
| ATTTCGGAAACTGCGAGTTT+CGG | + | Chr1:79461559-79461578 | MsG0180004547.01.T01:CDS | 40.0% | |
| CAATGTCCTTGGTATCTTGA+TGG | + | Chr1:79461723-79461742 | MsG0180004547.01.T01:CDS | 40.0% | |
| CAGAAATGCGATCGAAACAT+CGG | - | Chr1:79461292-79461311 | None:intergenic | 40.0% | |
| CGCATTAGGATTATCCTCTT+TGG | - | Chr1:79460893-79460912 | None:intergenic | 40.0% | |
| CTTGGAATGATCAATGTCCT+TGG | + | Chr1:79461712-79461731 | MsG0180004547.01.T01:CDS | 40.0% | |
| GAAGAAGAGATGCTTGAATG+GGG | + | Chr1:79461633-79461652 | MsG0180004547.01.T01:CDS | 40.0% | |
| GGAAGAAGAGATGCTTGAAT+GGG | + | Chr1:79461632-79461651 | MsG0180004547.01.T01:CDS | 40.0% | |
| TAAAGAAACTCGTGAACGGT+TGG | + | Chr1:79461228-79461247 | MsG0180004547.01.T01:intron | 40.0% | |
| TCTTCATACGCTCTTGAACT+TGG | - | Chr1:79461204-79461223 | None:intergenic | 40.0% | |
| TCTTGATGAAGTGGTTCAAG+TGG | + | Chr1:79461508-79461527 | MsG0180004547.01.T01:CDS | 40.0% | |
| AAATGCGATCGAAACATCGG+CGG | - | Chr1:79461289-79461308 | None:intergenic | 45.0% | |
| CGATGTTTCGATCGCATTTC+TGG | + | Chr1:79461290-79461309 | MsG0180004547.01.T01:intron | 45.0% | |
| CGGAAGAAGAGATGCTTGAA+TGG | + | Chr1:79461631-79461650 | MsG0180004547.01.T01:CDS | 45.0% | |
| GATGAAGTGGTTCAAGTGGA+CGG | + | Chr1:79461512-79461531 | MsG0180004547.01.T01:CDS | 45.0% | |
| GTTAACTGAATGCTGTGGTC+TGG | - | Chr1:79460965-79460984 | None:intergenic | 45.0% | |
| TGACGTGTCAAGGTTTCCTT+GGG | - | Chr1:79460927-79460946 | None:intergenic | 45.0% | |
| TGATCATTCCAAGCACCTCT+AGG | - | Chr1:79461705-79461724 | None:intergenic | 45.0% | |
| TTTCGGAAACTGCGAGTTTC+GGG | + | Chr1:79461560-79461579 | MsG0180004547.01.T01:CDS | 45.0% | |
| ! | GAGTGGTGGAGAATACAGTT+TGG | + | Chr1:79461596-79461615 | MsG0180004547.01.T01:CDS | 45.0% |
| AGAAGTAGAGACGCCAGTCA+GGG | - | Chr1:79461060-79461079 | None:intergenic | 50.0% | |
| CGCGTACGTGAACAGGATTT+CGG | + | Chr1:79461172-79461191 | MsG0180004547.01.T01:CDS | 50.0% | |
| CTGACGTGTCAAGGTTTCCT+TGG | - | Chr1:79460928-79460947 | None:intergenic | 50.0% | |
| GCTTGAATGGGGAATGTCTC+CGG | + | Chr1:79461644-79461663 | MsG0180004547.01.T01:CDS | 50.0% | |
| TAGAAGTAGAGACGCCAGTC+AGG | - | Chr1:79461061-79461080 | None:intergenic | 50.0% | |
| TCTACCAACTTCACGGAGTG+TGG | - | Chr1:79461110-79461129 | None:intergenic | 50.0% | |
| TGGTGTATGCTGACGTGTCA+AGG | - | Chr1:79460937-79460956 | None:intergenic | 50.0% | |
| ! | AAACTGCGAGTTTCGGGTGA+TGG | + | Chr1:79461566-79461585 | MsG0180004547.01.T01:CDS | 50.0% |
| ! | TTCTCCAAGAAGCGCGTGAT+CGG | + | Chr1:79461133-79461152 | MsG0180004547.01.T01:CDS | 50.0% |
| !! | AGTTTCGGGTGATGGAGCAA+GGG | + | Chr1:79461574-79461593 | MsG0180004547.01.T01:CDS | 50.0% |
| AACTTCACGGAGTGTGGACC+GGG | - | Chr1:79461104-79461123 | None:intergenic | 55.0% | |
| AATCTCCGCCGTCTCGTTTC+CGG | + | Chr1:79461022-79461041 | MsG0180004547.01.T01:CDS | 55.0% | |
| AATGCTGTGGTCTGGTGTGG+TGG | - | Chr1:79460957-79460976 | None:intergenic | 55.0% | |
| AGAATCGCGCGTACGTGAAC+AGG | + | Chr1:79461165-79461184 | MsG0180004547.01.T01:CDS | 55.0% | |
| CAACTTCACGGAGTGTGGAC+CGG | - | Chr1:79461105-79461124 | None:intergenic | 55.0% | |
| CTGAATGCTGTGGTCTGGTG+TGG | - | Chr1:79460960-79460979 | None:intergenic | 55.0% | |
| GAAGTAGAGACGCCAGTCAG+GGG | - | Chr1:79461059-79461078 | None:intergenic | 55.0% | |
| GAAGTGGTTCAAGTGGACGG+TGG | + | Chr1:79461515-79461534 | MsG0180004547.01.T01:CDS | 55.0% | |
| ! | CCTCTTTGGAAGCACACCCA+TGG | - | Chr1:79460879-79460898 | None:intergenic | 55.0% |
| !! | GAGTTTCGGGTGATGGAGCA+AGG | + | Chr1:79461573-79461592 | MsG0180004547.01.T01:CDS | 55.0% |
| AGCCTTGGCCGGAAACGAGA+CGG | - | Chr1:79461033-79461052 | None:intergenic | 60.0% | |
| CGGTCCACACTCCGTGAAGT+TGG | + | Chr1:79461103-79461122 | MsG0180004547.01.T01:CDS | 60.0% | |
| GGAAACGAGACGGCGGAGAT+TGG | - | Chr1:79461023-79461042 | None:intergenic | 60.0% | |
| TGCGATCGAAACATCGGCGG+CGG | - | Chr1:79461286-79461305 | None:intergenic | 60.0% | |
| ! | GTGATGGAGCAAGGGAGTGG+TGG | + | Chr1:79461582-79461601 | MsG0180004547.01.T01:CDS | 60.0% |
| !! | CAGATGCGCCTAGAGGTGCT+TGG | + | Chr1:79461694-79461713 | MsG0180004547.01.T01:CDS | 60.0% |
| ATGCGTCACGGCGAGTCCCA+AGG | + | Chr1:79460908-79460927 | MsG0180004547.01.T01:CDS | 65.0% | |
| CTTGGCCGGAAACGAGACGG+CGG | - | Chr1:79461030-79461049 | None:intergenic | 65.0% | |
| GACGCCGATCACGCGCTTCT+TGG | - | Chr1:79461140-79461159 | None:intergenic | 65.0% | |
| GGGACTCGCCGTGACGCATT+AGG | - | Chr1:79460907-79460926 | None:intergenic | 65.0% | |
| TGGCGTGCAGATGCGCCTAG+AGG | + | Chr1:79461687-79461706 | MsG0180004547.01.T01:CDS | 65.0% | |
| ! | TCGGCGGCGGATTCACCTTC+AGG | - | Chr1:79461273-79461292 | None:intergenic | 65.0% |
| !! | CGGGTGATGGAGCAAGGGAG+TGG | + | Chr1:79461579-79461598 | MsG0180004547.01.T01:CDS | 65.0% |
| ACGGAGTGTGGACCGGGTGC+GGG | - | Chr1:79461098-79461117 | None:intergenic | 70.0% | |
| ATCGCACAAGCCCGCCACGC+CGG | + | Chr1:79460995-79461014 | MsG0180004547.01.T01:CDS | 70.0% | |
| CACGGAGTGTGGACCGGGTG+CGG | - | Chr1:79461099-79461118 | None:intergenic | 70.0% | |
| CGCCGTCTCGTTTCCGGCCA+AGG | + | Chr1:79461028-79461047 | MsG0180004547.01.T01:CDS | 70.0% | |
| CGGGCTTGTGCGATGCCGGA+TGG | - | Chr1:79460989-79461008 | None:intergenic | 70.0% | |
| GAGACGGCGGAGATTGGCGC+CGG | - | Chr1:79461017-79461036 | None:intergenic | 70.0% | |
| GCCAAGGCTGCTCCCCTGAC+TGG | + | Chr1:79461044-79461063 | MsG0180004547.01.T01:CDS | 70.0% | |
| GCCAGTCAGGGGAGCAGCCT+TGG | - | Chr1:79461048-79461067 | None:intergenic | 70.0% | |
| GTCAGGGGAGCAGCCTTGGC+CGG | - | Chr1:79461044-79461063 | None:intergenic | 70.0% | |
| TCTCTCCCTACGCCCGCACC+CGG | + | Chr1:79461083-79461102 | MsG0180004547.01.T01:CDS | 70.0% | |
| !! | GTGGCGGGCTTGTGCGATGC+CGG | - | Chr1:79460993-79461012 | None:intergenic | 70.0% |
| GTGGACCGGGTGCGGGCGTA+GGG | - | Chr1:79461091-79461110 | None:intergenic | 75.0% | |
| TGTGGACCGGGTGCGGGCGT+AGG | - | Chr1:79461092-79461111 | None:intergenic | 75.0% | |
| !! | GAGATTGGCGCCGGCGTGGC+GGG | - | Chr1:79461008-79461027 | None:intergenic | 75.0% |
| !! | GGAGATTGGCGCCGGCGTGG+CGG | - | Chr1:79461009-79461028 | None:intergenic | 75.0% |
| !!! | GGCGGAGATTGGCGCCGGCG+TGG | - | Chr1:79461012-79461031 | None:intergenic | 80.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| Chr1 | gene | 79460878 | 79462016 | 79460878 | ID=MsG0180004547.01;Name=MsG0180004547.01 |
| Chr1 | mRNA | 79460878 | 79462016 | 79460878 | ID=MsG0180004547.01.T01;Parent=MsG0180004547.01;Name=MsG0180004547.01.T01;_AED=0.49;_eAED=0.49;_QI=0|0|0.5|1|1|1|2|174|252 |
| Chr1 | exon | 79460878 | 79461193 | 79460878 | ID=MsG0180004547.01.T01:exon:45628;Parent=MsG0180004547.01.T01 |
| Chr1 | exon | 79461400 | 79462016 | 79461400 | ID=MsG0180004547.01.T01:exon:45629;Parent=MsG0180004547.01.T01 |
| Chr1 | CDS | 79460878 | 79461193 | 79460878 | ID=MsG0180004547.01.T01:cds;Parent=MsG0180004547.01.T01 |
| Chr1 | CDS | 79461400 | 79461842 | 79461400 | ID=MsG0180004547.01.T01:cds;Parent=MsG0180004547.01.T01 |
| Chr1 | three_prime_UTR | 79461843 | 79462016 | 79461843 | ID=MsG0180004547.01.T01:three_prime_utr;Parent=MsG0180004547.01.T01 |
| Gene Sequence |
| Protein sequence |
