AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0180005272.01


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0180005272.01.T01 MTR_1g096140 81.952 543 5 3 1 487 5 510 0.0 877
MsG0180005272.01.T01 MTR_1g095970 74.242 528 53 4 1 487 23 508 0.0 759
MsG0180005272.01.T01 MTR_3g117710 67.078 486 95 5 27 489 87 530 0.0 664
MsG0180005272.01.T01 MTR_4g075540 62.838 444 103 4 50 470 47 451 0.0 567
MsG0180005272.01.T01 MTR_7g111890 52.331 472 159 6 42 486 116 548 5.83e-163 475
MsG0180005272.01.T01 MTR_8g092170 50.542 461 162 4 54 486 165 587 2.23e-161 472
MsG0180005272.01.T01 MTR_1g084610 52.070 459 154 5 55 486 114 533 1.28e-160 469
MsG0180005272.01.T01 MTR_4g123030 51.299 462 157 5 54 486 184 606 1.05e-157 464
MsG0180005272.01.T01 MTR_4g123030 49.624 399 133 5 54 423 184 543 7.30e-125 375
MsG0180005272.01.T01 MTR_3g015100 46.753 154 57 2 293 423 2 153 1.09e-42 149
MsG0180005272.01.T01 MTR_3g025460 64.286 70 25 0 92 161 91 160 2.13e-19 86.3
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0180005272.01.T01 AT4G09510 69.373 542 70 5 3 487 11 513 0.0 741
MsG0180005272.01.T01 AT1G35580 68.704 540 78 4 1 487 4 505 0.0 738
MsG0180005272.01.T01 AT1G35580 68.704 540 78 4 1 487 4 505 0.0 738
MsG0180005272.01.T01 AT1G22650 72.600 500 68 5 11 487 37 490 0.0 730
MsG0180005272.01.T01 AT1G72000 70.707 495 79 4 18 489 6 457 0.0 711
MsG0180005272.01.T01 AT4G34860 71.843 483 72 5 30 489 87 528 0.0 699
MsG0180005272.01.T01 AT4G34860 71.843 483 72 5 30 489 87 528 0.0 699
MsG0180005272.01.T01 AT4G34860 71.843 483 72 5 30 489 87 528 0.0 699
MsG0180005272.01.T01 AT4G09510 67.894 489 61 5 3 434 11 460 0.0 650
MsG0180005272.01.T01 AT1G35580 66.939 490 71 4 1 437 4 455 0.0 646
MsG0180005272.01.T01 AT1G22650 70.917 447 61 5 11 434 37 437 0.0 632
MsG0180005272.01.T01 AT1G56560 50.980 459 161 4 54 486 134 554 8.38e-161 470
MsG0180005272.01.T01 AT5G22510 51.193 461 159 4 54 486 134 556 8.84e-161 470
MsG0180005272.01.T01 AT5G22510 51.193 461 159 4 54 486 134 556 8.84e-161 470
MsG0180005272.01.T01 AT3G06500 51.515 462 156 5 54 486 182 604 8.45e-156 459
MsG0180005272.01.T01 AT3G05820 50.108 461 164 5 54 486 150 572 2.17e-155 457
MsG0180005272.01.T01 AT3G06500 49.622 397 132 5 119 486 48 405 2.01e-125 374
MsG0180005272.01.T01 AT3G05820 47.990 398 141 5 54 423 150 509 7.77e-121 364

Find 130 sgRNAs with CRISPR-Local

Find 277 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTCTCCTTGCAGGGTGTTTA+TGG 0.100926 1:-89438921 MsG0180005272.01.T01:intron
GATACTCTTATTGCAGATTT+TGG 0.135753 1:-89439783 MsG0180005272.01.T01:CDS
TTGAAATGTCTTTGATTATT+AGG 0.143461 1:+89437527 None:intergenic
TTCTTACTCTTATTCAACTA+TGG 0.176443 1:-89439377 MsG0180005272.01.T01:CDS
CTCCTGTTGACTCTGGATTC+TGG 0.209312 1:-89439737 MsG0180005272.01.T01:CDS
CGGTTCACCATTCATCAAAA+AGG 0.261228 1:+89439938 None:intergenic
TGATTAAAAGATCATCTTCT+TGG 0.264825 1:-89437734 MsG0180005272.01.T01:three_prime_UTR
ATGGTCTATTGCGGGTTATT+TGG 0.279758 1:-89437832 MsG0180005272.01.T01:CDS
AGCAACTAAATGACATTTAT+CGG 0.283643 1:-89438737 MsG0180005272.01.T01:intron
TGGATGGGCATATGGGAATT+AGG 0.284454 1:-89441558 None:intergenic
CACTCGTGACTTTCTATTGC+AGG 0.287232 1:+89438439 None:intergenic
TCTTGGACTTGCTGAAATAT+TGG 0.290089 1:-89437717 MsG0180005272.01.T01:three_prime_UTR
CACGAGTGGCGAATTGTTAC+TGG 0.296374 1:-89438424 MsG0180005272.01.T01:CDS
GCCTGATTTGATTGGAAGTT+TGG 0.308168 1:-89437587 MsG0180005272.01.T01:three_prime_UTR
GTTAAAGACACTACATCTTC+AGG 0.309497 1:-89439895 MsG0180005272.01.T01:CDS
TTCACATGAGAAGCTACTTT+TGG 0.315196 1:-89438770 MsG0180005272.01.T01:CDS
ATCCAATGGTTGCCGATGCC+TGG 0.318785 1:-89441304 MsG0180005272.01.T01:CDS
AGTTTACCATCGTAATATTC+AGG 0.320203 1:+89437893 None:intergenic
CCAACTCTGCTTTGTGCTGA+TGG 0.324554 1:-89439588 MsG0180005272.01.T01:CDS
TCATCTGCTTGTCTTCTTCA+AGG 0.335576 1:+89437763 None:intergenic
GTTTGGATAAACAAATTGTT+TGG 0.335897 1:-89439350 MsG0180005272.01.T01:CDS
AACAATTTGTTTATCCAAAC+AGG 0.336001 1:+89439353 None:intergenic
CTGGCCAAGATCCTCCATTA+TGG 0.347238 1:+89438371 None:intergenic
ACACGTGGTGGCTACTTCAT+TGG 0.356280 1:-89438625 MsG0180005272.01.T01:CDS
CAACAGGTGCACCTCTAAAA+TGG 0.356755 1:+89441258 None:intergenic
GATAAATGTCATTTAGTTGC+TGG 0.364423 1:+89438739 None:intergenic
TGGAAGATATGTTGGGAAAC+AGG 0.366576 1:-89437870 MsG0180005272.01.T01:CDS
TATTCAACTATGGGCCTGTT+TGG 0.368344 1:-89439367 MsG0180005272.01.T01:CDS
GAATCTGATAGTTGTCAAAA+AGG 0.369286 1:-89439660 MsG0180005272.01.T01:CDS
ATTGCACGTCTTGCTATTTG+TGG 0.381527 1:+89437953 None:intergenic
GCTGCATGATTGATAGAAAA+TGG 0.383530 1:-89439563 MsG0180005272.01.T01:intron
AAGAATAGAGAAAACTTAGA+AGG 0.390960 1:-89437669 MsG0180005272.01.T01:three_prime_UTR
TACTCGCCTGGAGGAAGATC+TGG 0.392572 1:-89441371 MsG0180005272.01.T01:CDS
AAAAGTGCTTGAATCTCAAT+AGG 0.404944 1:+89438894 None:intergenic
CTTATAATCCAAGCAACAAA+TGG 0.405459 1:+89437469 None:intergenic
AACCCGCAATAGACCATGTT+TGG 0.407039 1:+89437838 None:intergenic
GGTAAACTTGGAAGATATGT+TGG 0.414179 1:-89437878 MsG0180005272.01.T01:CDS
TACCAAACATGGTCTATTGC+GGG 0.421426 1:-89437840 MsG0180005272.01.T01:CDS
TCTTCGTAGCCTGATTTGAT+TGG 0.422481 1:-89437595 MsG0180005272.01.T01:three_prime_UTR
GGATCTTATTGAAGCTCGTT+GGG 0.432163 1:-89438500 MsG0180005272.01.T01:CDS
GAATATTACGATGGTAAACT+TGG 0.442361 1:-89437890 MsG0180005272.01.T01:CDS
GAGTAGATAGGTTTAAACTT+GGG 0.443964 1:-89439860 MsG0180005272.01.T01:CDS
TCCATTATGGTAACTCCATC+TGG 0.444012 1:+89438384 None:intergenic
AGAGCAGTCAATGGCAATCA+TGG 0.446518 1:-89438521 MsG0180005272.01.T01:CDS
ATGATTGCCATTGACTGCTC+TGG 0.446728 1:+89438523 None:intergenic
CATCTGCTTGTCTTCTTCAA+GGG 0.447224 1:+89437764 None:intergenic
CTGGAGGACCCCTCACACTT+GGG 0.450103 1:-89437795 MsG0180005272.01.T01:three_prime_UTR
GTCTATTGCGGGTTATTTGG+TGG 0.452343 1:-89437829 MsG0180005272.01.T01:CDS
CGTGCTTACACAAAATCTAC+AGG 0.455584 1:-89439699 MsG0180005272.01.T01:CDS
GCCAAACTTCCAATCAAATC+AGG 0.456991 1:+89437586 None:intergenic
TCTTACTCTTATTCAACTAT+GGG 0.464619 1:-89439376 MsG0180005272.01.T01:CDS
AGAGTTGCTCCTGTTGACTC+TGG 0.469270 1:-89439744 MsG0180005272.01.T01:CDS
ACCAGATGGAGTTACCATAA+TGG 0.469371 1:-89438385 MsG0180005272.01.T01:CDS
AGAGTAGATAGGTTTAAACT+TGG 0.471746 1:-89439861 MsG0180005272.01.T01:CDS
GGTGGGAGAAAAGAGTAGAT+AGG 0.473013 1:-89439872 MsG0180005272.01.T01:CDS
CACCAGAATCCAGAGTCAAC+AGG 0.475876 1:+89439735 None:intergenic
TCTCGGGTGCAGTGCTCCTA+TGG 0.481775 1:-89438009 MsG0180005272.01.T01:intron
AAGTCCTTCATGATGCCGTT+AGG 0.485437 1:-89439812 MsG0180005272.01.T01:CDS
AACTATGACAATTACTCGCC+TGG 0.487484 1:-89441383 MsG0180005272.01.T01:CDS
TGGATCTTATTGAAGCTCGT+TGG 0.487509 1:-89438501 MsG0180005272.01.T01:CDS
TTAAAGACACTACATCTTCA+GGG 0.492030 1:-89439894 MsG0180005272.01.T01:CDS
ACAGCTGCTTGCATCAAGAC+AGG 0.494728 1:-89437980 MsG0180005272.01.T01:CDS
ACAGCTGCAATTGTGCCAAC+AGG 0.495160 1:+89441242 None:intergenic
TCCCAGGCATCGGCAACCAT+TGG 0.497056 1:+89441302 None:intergenic
CCATCAGCACAAAGCAGAGT+TGG 0.497910 1:+89439588 None:intergenic
GCTGGAGGACCCCTCACACT+TGG 0.498361 1:-89437796 MsG0180005272.01.T01:three_prime_UTR
AGTAGATAGGTTTAAACTTG+GGG 0.499014 1:-89439859 MsG0180005272.01.T01:CDS
TTGACTTTATGCTTGTCAGA+GGG 0.502470 1:-89439624 MsG0180005272.01.T01:CDS
TCCAATGGTTGCCGATGCCT+GGG 0.503195 1:-89441303 MsG0180005272.01.T01:CDS
GTAAACTTGGAAGATATGTT+GGG 0.505556 1:-89437877 MsG0180005272.01.T01:CDS
ATCAAATCAGGCTACGAAGA+AGG 0.508106 1:+89437598 None:intergenic
GGGGTCCTCCAGCATCATCT+TGG 0.509985 1:+89437806 None:intergenic
TCAGTGTTCGATGGCTGAGA+TGG 0.510749 1:-89441524 MsG0180005272.01.T01:CDS
TCTGAGAGATTCCCAGGCAT+CGG 0.511999 1:+89441292 None:intergenic
GGAAGTTCTAAATTACGATC+AGG 0.512441 1:-89441204 MsG0180005272.01.T01:intron
AAATGTCAGTCCGGCTCGAA+TGG 0.512449 1:-89438602 MsG0180005272.01.T01:CDS
GTTACCATAATGGAGGATCT+TGG 0.514487 1:-89438375 MsG0180005272.01.T01:CDS
ATCCTTCAGTAAACGACTCT+CGG 0.516742 1:+89437922 None:intergenic
CTCGTTTGAGCCGCATCCAA+TGG 0.519347 1:-89441318 MsG0180005272.01.T01:CDS
TGAAGGACTTTGAAACTAGC+TGG 0.526537 1:+89439825 None:intergenic
CATAATGGAGGATCTTGGCC+AGG 0.526915 1:-89438370 MsG0180005272.01.T01:intron
TTAAAACCAGATCTTCCTCC+AGG 0.527021 1:+89441365 None:intergenic
AGCAGTATCTTGCTTGAGCA+TGG 0.533846 1:+89438845 None:intergenic
TGAAGCTCGTTGGGATGAGT+TGG 0.534616 1:-89438491 MsG0180005272.01.T01:CDS
TTGTGTAAAATAGCTGCTGC+TGG 0.537177 1:-89437563 MsG0180005272.01.T01:three_prime_UTR
GAGTTGCGAGCAGATGAAGC+AGG 0.538724 1:+89441338 None:intergenic
TTTGGTGGCCAAGATGATGC+TGG 0.539521 1:-89437814 MsG0180005272.01.T01:exon
CTTCATTGGAAATGTCAGTC+CGG 0.543913 1:-89438611 MsG0180005272.01.T01:CDS
TTATAATCCAAGCAACAAAT+GGG 0.545737 1:+89437470 None:intergenic
GCAAGATACTGCTGACGGAA+AGG 0.557282 1:-89438835 MsG0180005272.01.T01:CDS
GCATCGGCAACCATTGGATG+CGG 0.557385 1:+89441308 None:intergenic
CTGTTGACTCTGGATTCTGG+TGG 0.560824 1:-89439734 MsG0180005272.01.T01:CDS
AGCAACTCCAGAGCAGTCAA+TGG 0.562784 1:-89438530 MsG0180005272.01.T01:CDS
AGTCGGCTCTCAGTGTTCGA+TGG 0.565802 1:-89441533 MsG0180005272.01.T01:CDS
TGCCGAGAGTCGTTTACTGA+AGG 0.571524 1:-89437924 MsG0180005272.01.T01:CDS
ATTGACTTTATGCTTGTCAG+AGG 0.572993 1:-89439625 MsG0180005272.01.T01:CDS
GAAATCATCCCCAAGTGTGA+GGG 0.573270 1:+89437786 None:intergenic
GTCGTTTACTGAAGGATGGA+TGG 0.575163 1:-89437916 MsG0180005272.01.T01:CDS
GATAGGTTTAAACTTGGGGA+AGG 0.579136 1:-89439855 MsG0180005272.01.T01:CDS
GACACTACATCTTCAGGGGT+GGG 0.583162 1:-89439889 MsG0180005272.01.T01:CDS
GACTTTATGCCAACACGTGG+TGG 0.583242 1:-89438637 MsG0180005272.01.T01:CDS
GAGAGTCGTTTACTGAAGGA+TGG 0.585747 1:-89437920 MsG0180005272.01.T01:CDS
CATATGGGAATTAGGAAAGT+CGG 0.586182 1:-89441550 MsG0180005272.01.T01:CDS
AGTTGCGAGCAGATGAAGCA+GGG 0.592201 1:+89441339 None:intergenic
CAGGCAAGAAATACCAAACA+TGG 0.592666 1:-89437851 MsG0180005272.01.T01:CDS
ACTCGTGACTTTCTATTGCA+GGG 0.593543 1:+89438440 None:intergenic
GCTCGTTGGGATGAGTTGGT+TGG 0.593613 1:-89438487 MsG0180005272.01.T01:CDS
ATACCAAACATGGTCTATTG+CGG 0.597427 1:-89437841 MsG0180005272.01.T01:CDS
TGGAGGACCCCTCACACTTG+GGG 0.604221 1:-89437794 MsG0180005272.01.T01:three_prime_UTR
CATCGAAAATCCATTCGAGC+CGG 0.607036 1:+89438592 None:intergenic
GGAAATCATCCCCAAGTGTG+AGG 0.608698 1:+89437785 None:intergenic
TGACTTTATGCTTGTCAGAG+GGG 0.613950 1:-89439623 MsG0180005272.01.T01:CDS
TTGTTGTTTCTCTCAATACA+CGG 0.616804 1:-89437639 MsG0180005272.01.T01:three_prime_UTR
ATGAAGTAGCCACCACGTGT+TGG 0.617112 1:+89438628 None:intergenic
AGACACTACATCTTCAGGGG+TGG 0.617643 1:-89439890 MsG0180005272.01.T01:CDS
CAGCTGCTTGCATCAAGACA+GGG 0.626845 1:-89437979 MsG0180005272.01.T01:CDS
CTCAAGCAAGATACTGCTGA+CGG 0.630483 1:-89438840 MsG0180005272.01.T01:CDS
GTGCTTACACAAAATCTACA+GGG 0.638309 1:-89439698 MsG0180005272.01.T01:CDS
TAAAGACACTACATCTTCAG+GGG 0.641893 1:-89439893 MsG0180005272.01.T01:CDS
AAATCATCCCCAAGTGTGAG+GGG 0.644060 1:+89437787 None:intergenic
AAGCAGCTGTTACAAGCCAT+AGG 0.647567 1:+89437993 None:intergenic
AGATGGAGTTACCATAATGG+AGG 0.663691 1:-89438382 MsG0180005272.01.T01:CDS
AGCTGTTGATCATCAAGCAG+AGG 0.665755 1:-89441225 MsG0180005272.01.T01:CDS
GGATGGCCTGAATATTACGA+TGG 0.679721 1:-89437899 MsG0180005272.01.T01:CDS
TTTGACTTTATGCCAACACG+TGG 0.685176 1:-89438640 MsG0180005272.01.T01:CDS
GTTGCGAGCAGATGAAGCAG+GGG 0.696052 1:+89441340 None:intergenic
CTGCAATAGAAAGTCACGAG+TGG 0.705027 1:-89438438 MsG0180005272.01.T01:CDS
TGCTTACACAAAATCTACAG+GGG 0.706001 1:-89439697 MsG0180005272.01.T01:CDS
TATGACAATTACTCGCCTGG+AGG 0.730881 1:-89441380 MsG0180005272.01.T01:CDS
GGTGGCCAAGATGATGCTGG+AGG 0.759245 1:-89437811 MsG0180005272.01.T01:exon

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TATTTATTTGTTTAATCAAA+AGG - Chr1:89438034-89438053 MsG0180005272.01.T01:intron 10.0%
!! AAATAAGTTTAATGTTATTC+CGG - Chr1:89440235-89440254 MsG0180005272.01.T01:intron 15.0%
!! AACTTTAATATAGTTTATTG+TGG - Chr1:89440650-89440669 MsG0180005272.01.T01:intron 15.0%
!! ACTTTAATATAGTTTATTGT+GGG - Chr1:89440651-89440670 MsG0180005272.01.T01:intron 15.0%
!!! AAGAAATTTTTTACTATTTC+CGG + Chr1:89439002-89439021 None:intergenic 15.0%
!!! ATGATAAATTTTTCTCTTTT+AGG - Chr1:89438923-89438942 MsG0180005272.01.T01:intron 15.0%
!! AAAATATTTAGCTATCATTC+TGG + Chr1:89438183-89438202 None:intergenic 20.0%
!! AAATATTTAGCTATCATTCT+GGG + Chr1:89438182-89438201 None:intergenic 20.0%
!! ATGAATCATTATAACAGTTA+TGG + Chr1:89438747-89438766 None:intergenic 20.0%
!! CTAAAATTCATATTCTGATT+TGG - Chr1:89437754-89437773 MsG0180005272.01.T01:three_prime_UTR 20.0%
!! TATTCAAAGTTCATTTAACT+TGG - Chr1:89440597-89440616 MsG0180005272.01.T01:intron 20.0%
!! TTGAAATGTCTTTGATTATT+AGG + Chr1:89441393-89441412 None:intergenic 20.0%
!!! ATAATTTTACTCCATATACT+TGG - Chr1:89437779-89437798 MsG0180005272.01.T01:three_prime_UTR 20.0%
!!! ATTATTTTTACCTATCAATC+TGG + Chr1:89438354-89438373 None:intergenic 20.0%
!!! ATTCAAAGTTCATTTAACTT+GGG - Chr1:89440598-89440617 MsG0180005272.01.T01:intron 20.0%
!!! ATTTTCCAATTTATTGTTCA+AGG - Chr1:89439481-89439500 MsG0180005272.01.T01:intron 20.0%
!!! CATAATCAGTTTAAAATTTC+AGG - Chr1:89437964-89437983 MsG0180005272.01.T01:CDS 20.0%
!!! GTTTTAATCTCTTTAATATG+TGG - Chr1:89439898-89439917 MsG0180005272.01.T01:CDS 20.0%
!!! TTTTCTGACAATTATCAATA+AGG - Chr1:89441532-89441551 MsG0180005272.01.T01:CDS 20.0%
! AAATCAGATTATCCATAGAA+AGG + Chr1:89440790-89440809 None:intergenic 25.0%
! AAGAATAGAGAAAACTTAGA+AGG - Chr1:89441248-89441267 MsG0180005272.01.T01:CDS 25.0%
! AATATTTAGCTATCATTCTG+GGG + Chr1:89438181-89438200 None:intergenic 25.0%
! ACAAAATGAAAAGTTAGAGA+AGG + Chr1:89440881-89440900 None:intergenic 25.0%
! ACATTATCTAGTTATTTGGA+TGG - Chr1:89439428-89439447 MsG0180005272.01.T01:intron 25.0%
! ACTGTGTAAAGGTAAAAAAT+TGG + Chr1:89438873-89438892 None:intergenic 25.0%
! AGCAACTAAATGACATTTAT+CGG - Chr1:89440180-89440199 MsG0180005272.01.T01:intron 25.0%
! ATAACTCATATCCAAGTATA+TGG + Chr1:89437793-89437812 None:intergenic 25.0%
! ATGATTGATAGAAAATGGTA+AGG - Chr1:89439359-89439378 MsG0180005272.01.T01:CDS 25.0%
! ATGCTATAAGTTGTTCTTAT+AGG - Chr1:89439665-89439684 MsG0180005272.01.T01:CDS 25.0%
! CATAACCTTGAACAATAAAT+TGG + Chr1:89439489-89439508 None:intergenic 25.0%
! CATTAGATGAATTTGACATA+TGG + Chr1:89439826-89439845 None:intergenic 25.0%
! CCTAAAAAGAACAACATTAA+TGG + Chr1:89438079-89438098 None:intergenic 25.0%
! GAAAAGATTTGCAACATATT+TGG - Chr1:89440839-89440858 MsG0180005272.01.T01:intron 25.0%
! GTAAGTATTATCAATCTGTT+TGG + Chr1:89440712-89440731 None:intergenic 25.0%
! GTTTGGATAAACAAATTGTT+TGG - Chr1:89439567-89439586 MsG0180005272.01.T01:CDS 25.0%
! TATCAATCCATAAGAATGAA+GGG + Chr1:89438464-89438483 None:intergenic 25.0%
! TCCAAATAACTAGATAATGT+TGG + Chr1:89439428-89439447 None:intergenic 25.0%
! TCTTACTCTTATTCAACTAT+GGG - Chr1:89439541-89439560 MsG0180005272.01.T01:intron 25.0%
! TGATTAAAAGATCATCTTCT+TGG - Chr1:89441183-89441202 MsG0180005272.01.T01:intron 25.0%
! TGCAATATCACATATATCAA+AGG - Chr1:89437867-89437886 MsG0180005272.01.T01:CDS 25.0%
! TTATAATCCAAGCAACAAAT+GGG + Chr1:89441450-89441469 None:intergenic 25.0%
! TTCTTACTCTTATTCAACTA+TGG - Chr1:89439540-89439559 MsG0180005272.01.T01:intron 25.0%
! TTTGATATATGTGATATTGC+AGG + Chr1:89437868-89437887 None:intergenic 25.0%
!! AACAATTTGTTTATCCAAAC+AGG + Chr1:89439567-89439586 None:intergenic 25.0%
!! AGGAAAAGCATATAATTTAC+TGG - Chr1:89438096-89438115 MsG0180005272.01.T01:intron 25.0%
!! CCATTAATGTTGTTCTTTTT+AGG - Chr1:89438076-89438095 MsG0180005272.01.T01:intron 25.0%
!!! AAGAAAGAGATCATTTTTCT+TGG - Chr1:89438391-89438410 MsG0180005272.01.T01:CDS 25.0%
!!! ACTAAATACAGAGTCATTTT+TGG - Chr1:89440681-89440700 MsG0180005272.01.T01:intron 25.0%
!!! TTCATTTTGTTTAATGCTCT+CGG - Chr1:89440891-89440910 MsG0180005272.01.T01:intron 25.0%
AAAAAGTTAAGGCATGAACT+CGG + Chr1:89440753-89440772 None:intergenic 30.0%
AGAGTAGATAGGTTTAAACT+TGG - Chr1:89439056-89439075 MsG0180005272.01.T01:intron 30.0%
AGTAGATAGGTTTAAACTTG+GGG - Chr1:89439058-89439077 MsG0180005272.01.T01:intron 30.0%
AGTTTACCATCGTAATATTC+AGG + Chr1:89441027-89441046 None:intergenic 30.0%
ATAGAAATGAAGATTGTAGC+TGG - Chr1:89438566-89438585 MsG0180005272.01.T01:CDS 30.0%
ATAGAATTGAAGATTGTAGC+TGG - Chr1:89438481-89438500 MsG0180005272.01.T01:CDS 30.0%
ATCAATCCATAAATGTCAAG+AGG + Chr1:89438548-89438567 None:intergenic 30.0%
ATCAATCCATAAGAATGAAG+GGG + Chr1:89438463-89438482 None:intergenic 30.0%
ATGGTTAAGTGAACAAAAAG+AGG + Chr1:89438060-89438079 None:intergenic 30.0%
ATTATCCATAGAAAGGATGA+GGG + Chr1:89440783-89440802 None:intergenic 30.0%
CTATCAATCCATAAGAATGA+AGG + Chr1:89438465-89438484 None:intergenic 30.0%
CTGATTTATACAGTGGTTAT+TGG - Chr1:89440803-89440822 MsG0180005272.01.T01:intron 30.0%
CTTATAATCCAAGCAACAAA+TGG + Chr1:89441451-89441470 None:intergenic 30.0%
CTTTCCTTTAACAAACAACT+TGG - Chr1:89438522-89438541 MsG0180005272.01.T01:CDS 30.0%
GAATATTACGATGGTAAACT+TGG - Chr1:89441027-89441046 MsG0180005272.01.T01:intron 30.0%
GAATCTGATAGTTGTCAAAA+AGG - Chr1:89439257-89439276 MsG0180005272.01.T01:intron 30.0%
GAGTAGATAGGTTTAAACTT+GGG - Chr1:89439057-89439076 MsG0180005272.01.T01:intron 30.0%
GCCAACATTATCTAGTTATT+TGG - Chr1:89439424-89439443 MsG0180005272.01.T01:intron 30.0%
GGATAATCTGATTTATACAG+TGG - Chr1:89440796-89440815 MsG0180005272.01.T01:intron 30.0%
GTAAACTTGGAAGATATGTT+GGG - Chr1:89441040-89441059 MsG0180005272.01.T01:intron 30.0%
GTCAAATTCATCTAATGATG+TGG - Chr1:89439829-89439848 MsG0180005272.01.T01:CDS 30.0%
GTTGTTCTTATAGGCTATAT+TGG - Chr1:89439674-89439693 MsG0180005272.01.T01:CDS 30.0%
TAACACATAGGTTTCACATT+GGG + Chr1:89438233-89438252 None:intergenic 30.0%
TAAGCTTTACGAGATTGTTT+AGG + Chr1:89439765-89439784 None:intergenic 30.0%
TAATATGTGGTTTCAATTCG+AGG - Chr1:89439911-89439930 MsG0180005272.01.T01:CDS 30.0%
TAGATACTTGAGTAACACAT+AGG + Chr1:89438245-89438264 None:intergenic 30.0%
TATAATCCCAAGCAACAAAT+GGG + Chr1:89441478-89441497 None:intergenic 30.0%
TCAAAGTTAACTTTGACATC+TGG + Chr1:89438001-89438020 None:intergenic 30.0%
TTAAAGACACTACATCTTCA+GGG - Chr1:89439023-89439042 MsG0180005272.01.T01:intron 30.0%
TTAAATCCCCTTCATTCTTA+TGG - Chr1:89438454-89438473 MsG0180005272.01.T01:CDS 30.0%
TTATAATCCCAAGCAACAAA+TGG + Chr1:89441479-89441498 None:intergenic 30.0%
! AAACCTGGTGTCAATATAAA+GGG - Chr1:89438302-89438321 MsG0180005272.01.T01:intron 30.0%
! AAATCTCTAGTCCATTTTAG+AGG - Chr1:89437648-89437667 MsG0180005272.01.T01:three_prime_UTR 30.0%
! AGAGATAGATAGCAATTTTC+GGG + Chr1:89438137-89438156 None:intergenic 30.0%
! GAAGATGATCTTTTAATCAC+TGG + Chr1:89441182-89441201 None:intergenic 30.0%
! GAGAGATAGATAGCAATTTT+CGG + Chr1:89438138-89438157 None:intergenic 30.0%
! GATAAATGTCATTTAGTTGC+TGG + Chr1:89440181-89440200 None:intergenic 30.0%
! GATACTCTTATTGCAGATTT+TGG - Chr1:89439134-89439153 MsG0180005272.01.T01:intron 30.0%
! TAACTCCATCTGGTATTTTT+AGG + Chr1:89440526-89440545 None:intergenic 30.0%
!! AAAAGTGCTTGAATCTCAAT+AGG + Chr1:89440026-89440045 None:intergenic 30.0%
!! GTTATCTCTAAAATGTCAAG+AGG + Chr1:89438633-89438652 None:intergenic 30.0%
!! TCATTTTGTTTAATGCTCTC+GGG - Chr1:89440892-89440911 MsG0180005272.01.T01:intron 30.0%
!! TTGTTGTTTCTCTCAATACA+CGG - Chr1:89441278-89441297 MsG0180005272.01.T01:CDS 30.0%
!!! AAGAGTATCTGTTTTCCTAA+CGG + Chr1:89439123-89439142 None:intergenic 30.0%
AACCAACAGACAATTCACTA+AGG + Chr1:89437494-89437513 None:intergenic 35.0%
AACTAAGCATGATGAGAGAA+AGG + Chr1:89440578-89440597 None:intergenic 35.0%
AATTTGACATATGGCCTGTT+TGG + Chr1:89439817-89439836 None:intergenic 35.0%
ACCAACAGACAATTCACTAA+GGG + Chr1:89437493-89437512 None:intergenic 35.0%
ACTAAGCATGATGAGAGAAA+GGG + Chr1:89440577-89440596 None:intergenic 35.0%
AGGGGGAAAAGAAAAAGTTA+AGG + Chr1:89440764-89440783 None:intergenic 35.0%
ATACCAAACATGGTCTATTG+CGG - Chr1:89441076-89441095 MsG0180005272.01.T01:intron 35.0%
CATAAAGTCAAACACCATTC+TGG + Chr1:89440269-89440288 None:intergenic 35.0%
GATTATCCATAGAAAGGATG+AGG + Chr1:89440784-89440803 None:intergenic 35.0%
GCTGCATGATTGATAGAAAA+TGG - Chr1:89439354-89439373 MsG0180005272.01.T01:CDS 35.0%
GGTAAACTTGGAAGATATGT+TGG - Chr1:89441039-89441058 MsG0180005272.01.T01:intron 35.0%
GTAACACATAGGTTTCACAT+TGG + Chr1:89438234-89438253 None:intergenic 35.0%
GTGATCCTAAAAATACCAGA+TGG - Chr1:89440518-89440537 MsG0180005272.01.T01:intron 35.0%
GTGCTTACACAAAATCTACA+GGG - Chr1:89439219-89439238 MsG0180005272.01.T01:intron 35.0%
GTTAAAGACACTACATCTTC+AGG - Chr1:89439022-89439041 MsG0180005272.01.T01:intron 35.0%
TAAAGACACTACATCTTCAG+GGG - Chr1:89439024-89439043 MsG0180005272.01.T01:intron 35.0%
TAACCCTTTATATTGACACC+AGG + Chr1:89438308-89438327 None:intergenic 35.0%
TAGGAAAACAATACGAAACC+TGG - Chr1:89438287-89438306 MsG0180005272.01.T01:intron 35.0%
TCAAATAAGCCAATCCAAAC+AGG - Chr1:89439800-89439819 MsG0180005272.01.T01:CDS 35.0%
TCTACAAGACATACAATCTG+TGG - Chr1:89437901-89437920 MsG0180005272.01.T01:CDS 35.0%
TGCTTACACAAAATCTACAG+GGG - Chr1:89439220-89439239 MsG0180005272.01.T01:intron 35.0%
TTACCTATCAATCTGGTAAC+AGG + Chr1:89438347-89438366 None:intergenic 35.0%
TTATCCATAGAAAGGATGAG+GGG + Chr1:89440782-89440801 None:intergenic 35.0%
TTGACTTTATGCTTGTCAGA+GGG - Chr1:89439293-89439312 MsG0180005272.01.T01:intron 35.0%
TTGTAGCTGGATGTTTAATC+AGG - Chr1:89438494-89438513 MsG0180005272.01.T01:CDS 35.0%
! ATTGACTTTATGCTTGTCAG+AGG - Chr1:89439292-89439311 MsG0180005272.01.T01:intron 35.0%
! CTTTTTGATGAATGGTGAAC+CGG - Chr1:89438980-89438999 MsG0180005272.01.T01:intron 35.0%
! GAAACCTGGTGTCAATATAA+AGG - Chr1:89438301-89438320 MsG0180005272.01.T01:intron 35.0%
! GATTCAAGCACTTTTCTTCA+TGG - Chr1:89440031-89440050 MsG0180005272.01.T01:intron 35.0%
! GTATTGTTTTCCTAGCAATC+TGG + Chr1:89438281-89438300 None:intergenic 35.0%
! TTATCTCTGCAAGTTTTCAC+TGG - Chr1:89437833-89437852 MsG0180005272.01.T01:CDS 35.0%
! TTTTTACCTTTACACAGTCG+TGG - Chr1:89438875-89438894 MsG0180005272.01.T01:CDS 35.0%
!! GCAGGGTAACTAATTTTTAG+CGG + Chr1:89440463-89440482 None:intergenic 35.0%
!! GGAAGTTCTAAATTACGATC+AGG - Chr1:89437713-89437732 MsG0180005272.01.T01:three_prime_UTR 35.0%
!! TCTTGGACTTGCTGAAATAT+TGG - Chr1:89441200-89441219 MsG0180005272.01.T01:intron 35.0%
!! TTCACATGAGAAGCTACTTT+TGG - Chr1:89440147-89440166 MsG0180005272.01.T01:intron 35.0%
!!! AATTGTCTGTTGGTTTTGCA+AGG - Chr1:89437499-89437518 MsG0180005272.01.T01:three_prime_UTR 35.0%
!!! ATTGTCTGTTGGTTTTGCAA+GGG - Chr1:89437500-89437519 MsG0180005272.01.T01:three_prime_UTR 35.0%
!!! GATTTTCGATGGTTTGCTTT+AGG - Chr1:89440337-89440356 MsG0180005272.01.T01:intron 35.0%
AACTATGACAATTACTCGCC+TGG - Chr1:89437534-89437553 MsG0180005272.01.T01:three_prime_UTR 40.0%
AATTGGTCCACTGTACTTTG+TGG + Chr1:89438856-89438875 None:intergenic 40.0%
ACCAGATGGAGTTACCATAA+TGG - Chr1:89440532-89440551 MsG0180005272.01.T01:intron 40.0%
ACTCGTGACTTTCTATTGCA+GGG + Chr1:89440480-89440499 None:intergenic 40.0%
ACTTGGCCTCTTGACATTTA+TGG - Chr1:89438539-89438558 MsG0180005272.01.T01:CDS 40.0%
AGATGGAGTTACCATAATGG+AGG - Chr1:89440535-89440554 MsG0180005272.01.T01:intron 40.0%
ATATCCATAAACACCCTGCA+AGG + Chr1:89440003-89440022 None:intergenic 40.0%
ATCAAATCAGGCTACGAAGA+AGG + Chr1:89441322-89441341 None:intergenic 40.0%
ATCCTTCAGTAAACGACTCT+CGG + Chr1:89440998-89441017 None:intergenic 40.0%
ATGCCTGTTACCAGATTGAT+AGG - Chr1:89438341-89438360 MsG0180005272.01.T01:intron 40.0%
ATTGTTTCCTTCTCCTTGCA+GGG - Chr1:89439987-89440006 MsG0180005272.01.T01:intron 40.0%
CAGGCAAGAAATACCAAACA+TGG - Chr1:89441066-89441085 MsG0180005272.01.T01:intron 40.0%
CATCTGCTTGTCTTCTTCAA+GGG + Chr1:89441156-89441175 None:intergenic 40.0%
CATTTATCGGTACAAGACTG+AGG - Chr1:89440193-89440212 MsG0180005272.01.T01:intron 40.0%
CCGAAGTTCAACTCGTATTT+CGG - Chr1:89439935-89439954 MsG0180005272.01.T01:CDS 40.0%
CGGTTCACCATTCATCAAAA+AGG + Chr1:89438982-89439001 None:intergenic 40.0%
CGTGCTTACACAAAATCTAC+AGG - Chr1:89439218-89439237 MsG0180005272.01.T01:intron 40.0%
CTTCATTGGAAATGTCAGTC+CGG - Chr1:89440306-89440325 MsG0180005272.01.T01:intron 40.0%
GACAGAGATCATTTGATGAG+AGG - Chr1:89437466-89437485 MsG0180005272.01.T01:intron 40.0%
GATAGGTTTAAACTTGGGGA+AGG - Chr1:89439062-89439081 MsG0180005272.01.T01:intron 40.0%
GCACAAGTGCTTATCATGTT+TGG - Chr1:89439598-89439617 MsG0180005272.01.T01:CDS 40.0%
GCCAAACTTCCAATCAAATC+AGG + Chr1:89441334-89441353 None:intergenic 40.0%
GCTTATTTGAGCTTCTCTAC+TGG + Chr1:89439790-89439809 None:intergenic 40.0%
GGATCTTATTGAAGCTCGTT+GGG - Chr1:89440417-89440436 MsG0180005272.01.T01:intron 40.0%
TACCAAACATGGTCTATTGC+GGG - Chr1:89441077-89441096 MsG0180005272.01.T01:intron 40.0%
TACCCTGCAAAGAACAAAAC+AGG - Chr1:89438687-89438706 MsG0180005272.01.T01:intron 40.0%
TATCCATAGAAAGGATGAGG+GGG + Chr1:89440781-89440800 None:intergenic 40.0%
TATTCAACTATGGGCCTGTT+TGG - Chr1:89439550-89439569 MsG0180005272.01.T01:intron 40.0%
TCATCTGCTTGTCTTCTTCA+AGG + Chr1:89441157-89441176 None:intergenic 40.0%
TCCATTATGGTAACTCCATC+TGG + Chr1:89440536-89440555 None:intergenic 40.0%
TCCCTTAGTGAATTGTCTGT+TGG - Chr1:89437489-89437508 MsG0180005272.01.T01:three_prime_UTR 40.0%
TCGGATCAAAATCAGAGGTA+TGG + Chr1:89440734-89440753 None:intergenic 40.0%
TGAACTCGGATCAAAATCAG+AGG + Chr1:89440739-89440758 None:intergenic 40.0%
TGACTTTATGCTTGTCAGAG+GGG - Chr1:89439294-89439313 MsG0180005272.01.T01:intron 40.0%
TGGAAGATATGTTGGGAAAC+AGG - Chr1:89441047-89441066 MsG0180005272.01.T01:intron 40.0%
TGGATCTTATTGAAGCTCGT+TGG - Chr1:89440416-89440435 MsG0180005272.01.T01:intron 40.0%
TGTCTCTCTATGTTTAGCCT+CGG + Chr1:89437450-89437469 None:intergenic 40.0%
TGTGATATTGCAGGTTCATG+TGG + Chr1:89437859-89437878 None:intergenic 40.0%
TTAAAACCAGATCTTCCTCC+AGG + Chr1:89437555-89437574 None:intergenic 40.0%
TTCCGGATTCAATTCCAGAA+TGG - Chr1:89440252-89440271 MsG0180005272.01.T01:intron 40.0%
TTGTGTAAAATAGCTGCTGC+TGG - Chr1:89441354-89441373 MsG0180005272.01.T01:CDS 40.0%
! AAGATCTCCCATTTGTTGCT+TGG - Chr1:89441468-89441487 MsG0180005272.01.T01:intron 40.0%
! ACTTTGACATCTGGTGTCAA+CGG + Chr1:89437992-89438011 None:intergenic 40.0%
! AGATCTCCCATTTGTTGCTT+GGG - Chr1:89441469-89441488 MsG0180005272.01.T01:intron 40.0%
! ATCAAAAAGGCTAGAGCACT+TGG + Chr1:89438969-89438988 None:intergenic 40.0%
! ATGGTCTATTGCGGGTTATT+TGG - Chr1:89441085-89441104 MsG0180005272.01.T01:intron 40.0%
! ATTTAGCTATCATTCTGGGG+AGG + Chr1:89438178-89438197 None:intergenic 40.0%
! CCGAAATACGAGTTGAACTT+CGG + Chr1:89439938-89439957 None:intergenic 40.0%
! GAGGCCAAGTTGTTTGTTAA+AGG + Chr1:89438529-89438548 None:intergenic 40.0%
! GCCTGATTTGATTGGAAGTT+TGG - Chr1:89441330-89441349 MsG0180005272.01.T01:CDS 40.0%
! GTTACCATAATGGAGGATCT+TGG - Chr1:89440542-89440561 MsG0180005272.01.T01:intron 40.0%
! TCAAAAAGGCTAGAGCACTT+GGG + Chr1:89438968-89438987 None:intergenic 40.0%
! TCTTCGTAGCCTGATTTGAT+TGG - Chr1:89441322-89441341 MsG0180005272.01.T01:CDS 40.0%
! TTACTCTCCCATTTGTTGCT+TGG - Chr1:89441440-89441459 MsG0180005272.01.T01:intron 40.0%
! TTTGACTTTATGCCAACACG+TGG - Chr1:89440277-89440296 MsG0180005272.01.T01:intron 40.0%
! TTTTCCTAACGGCATCATGA+AGG + Chr1:89439112-89439131 None:intergenic 40.0%
!! AGATTTTCTGAGAGATTCCC+AGG + Chr1:89437634-89437653 None:intergenic 40.0%
!! ATTGCACGTCTTGCTATTTG+TGG + Chr1:89440967-89440986 None:intergenic 40.0%
!! CACCATTCTGGAATTGAATC+CGG + Chr1:89440257-89440276 None:intergenic 40.0%
!! GATTTTGGCGAAAGTGCAAT+CGG - Chr1:89439149-89439168 MsG0180005272.01.T01:intron 40.0%
!! GCTCTAGCCTTTTTGATGAA+TGG - Chr1:89438972-89438991 MsG0180005272.01.T01:intron 40.0%
!! TGAAGGACTTTGAAACTAGC+TGG + Chr1:89439095-89439114 None:intergenic 40.0%
!! TGCCTGTTTTGTTCTTTGCA+GGG + Chr1:89438692-89438711 None:intergenic 40.0%
!! TTGCCTGTTTTGTTCTTTGC+AGG + Chr1:89438693-89438712 None:intergenic 40.0%
AAATCATCCCCAAGTGTGAG+GGG + Chr1:89441133-89441152 None:intergenic 45.0%
AACCCGCAATAGACCATGTT+TGG + Chr1:89441082-89441101 None:intergenic 45.0%
AAGCAGCTGTTACAAGCCAT+AGG + Chr1:89440927-89440946 None:intergenic 45.0%
AAGTCCTTCATGATGCCGTT+AGG - Chr1:89439105-89439124 MsG0180005272.01.T01:intron 45.0%
AGAGCAGTCAATGGCAATCA+TGG - Chr1:89440396-89440415 MsG0180005272.01.T01:intron 45.0%
AGCAGTATCTTGCTTGAGCA+TGG + Chr1:89440075-89440094 None:intergenic 45.0%
AGCTGTTGATCATCAAGCAG+AGG - Chr1:89437692-89437711 MsG0180005272.01.T01:three_prime_UTR 45.0%
ATAAACACCCTGCAAGGAGA+AGG + Chr1:89439997-89440016 None:intergenic 45.0%
CACTCGTGACTTTCTATTGC+AGG + Chr1:89440481-89440500 None:intergenic 45.0%
CATCGAAAATCCATTCGAGC+CGG + Chr1:89440328-89440347 None:intergenic 45.0%
CTCAAGCAAGATACTGCTGA+CGG - Chr1:89440077-89440096 MsG0180005272.01.T01:intron 45.0%
CTGCAATAGAAAGTCACGAG+TGG - Chr1:89440479-89440498 MsG0180005272.01.T01:intron 45.0%
CTTTACACAGTCGTGGACAT+CGG - Chr1:89438882-89438901 MsG0180005272.01.T01:CDS 45.0%
GAAATCATCCCCAAGTGTGA+GGG + Chr1:89441134-89441153 None:intergenic 45.0%
GACATATGGCCTGTTTGGAT+TGG + Chr1:89439812-89439831 None:intergenic 45.0%
GAGAGTCGTTTACTGAAGGA+TGG - Chr1:89440997-89441016 MsG0180005272.01.T01:intron 45.0%
GATGAGAGAAAGGGAAAACC+TGG + Chr1:89440568-89440587 None:intergenic 45.0%
GATTGTTTCCTTCTCCTTGC+AGG - Chr1:89439986-89440005 MsG0180005272.01.T01:intron 45.0%
GGATGGCCTGAATATTACGA+TGG - Chr1:89441018-89441037 MsG0180005272.01.T01:intron 45.0%
GGTGGGAGAAAAGAGTAGAT+AGG - Chr1:89439045-89439064 MsG0180005272.01.T01:intron 45.0%
GTCGTTTACTGAAGGATGGA+TGG - Chr1:89441001-89441020 MsG0180005272.01.T01:intron 45.0%
TATGACAATTACTCGCCTGG+AGG - Chr1:89437537-89437556 MsG0180005272.01.T01:three_prime_UTR 45.0%
TTTCCCCCTCATCCTTTCTA+TGG - Chr1:89440775-89440794 MsG0180005272.01.T01:intron 45.0%
! ATGATTGCCATTGACTGCTC+TGG + Chr1:89440397-89440416 None:intergenic 45.0%
! CAACAGGTGCACCTCTAAAA+TGG + Chr1:89437662-89437681 None:intergenic 45.0%
! GTCTATTGCGGGTTATTTGG+TGG - Chr1:89441088-89441107 MsG0180005272.01.T01:intron 45.0%
! TTCTCCTTGCAGGGTGTTTA+TGG - Chr1:89439996-89440015 MsG0180005272.01.T01:intron 45.0%
!! CATTTTAGAGGTGCACCTGT+TGG - Chr1:89437660-89437679 MsG0180005272.01.T01:three_prime_UTR 45.0%
ACACGTGGTGGCTACTTCAT+TGG - Chr1:89440292-89440311 MsG0180005272.01.T01:intron 50.0%
ACAGCTGCAATTGTGCCAAC+AGG + Chr1:89437678-89437697 None:intergenic 50.0%
ACAGCTGCTTGCATCAAGAC+AGG - Chr1:89440937-89440956 MsG0180005272.01.T01:intron 50.0%
AGACACTACATCTTCAGGGG+TGG - Chr1:89439027-89439046 MsG0180005272.01.T01:intron 50.0%
AGCAACTCCAGAGCAGTCAA+TGG - Chr1:89440387-89440406 MsG0180005272.01.T01:intron 50.0%
AGTTGCGAGCAGATGAAGCA+GGG + Chr1:89437581-89437600 None:intergenic 50.0%
ATGAAGTAGCCACCACGTGT+TGG + Chr1:89440292-89440311 None:intergenic 50.0%
CACCAGAATCCAGAGTCAAC+AGG + Chr1:89439185-89439204 None:intergenic 50.0%
CACGAGTGGCGAATTGTTAC+TGG - Chr1:89440493-89440512 MsG0180005272.01.T01:intron 50.0%
CAGCTGCTTGCATCAAGACA+GGG - Chr1:89440938-89440957 MsG0180005272.01.T01:intron 50.0%
CCAACTCTGCTTTGTGCTGA+TGG - Chr1:89439329-89439348 MsG0180005272.01.T01:CDS 50.0%
CCATCAGCACAAAGCAGAGT+TGG + Chr1:89439332-89439351 None:intergenic 50.0%
CGATGTCCACGACTGTGTAA+AGG + Chr1:89438884-89438903 None:intergenic 50.0%
CTGGCCAAGATCCTCCATTA+TGG + Chr1:89440549-89440568 None:intergenic 50.0%
GACACTACATCTTCAGGGGT+GGG - Chr1:89439028-89439047 MsG0180005272.01.T01:intron 50.0%
GACTTTATGCCAACACGTGG+TGG - Chr1:89440280-89440299 MsG0180005272.01.T01:intron 50.0%
GCAAGATACTGCTGACGGAA+AGG - Chr1:89440082-89440101 MsG0180005272.01.T01:intron 50.0%
GGAAATCATCCCCAAGTGTG+AGG + Chr1:89441135-89441154 None:intergenic 50.0%
GTGTGCGTTACCAGATTGCT+AGG - Chr1:89438268-89438287 MsG0180005272.01.T01:intron 50.0%
GTTGCCTCCACAAAGTACAG+TGG - Chr1:89438846-89438865 MsG0180005272.01.T01:CDS 50.0%
TCAGTGTTCGATGGCTGAGA+TGG - Chr1:89437393-89437412 MsG0180005272.01.T01:three_prime_UTR 50.0%
TCTGAGAGATTCCCAGGCAT+CGG + Chr1:89437628-89437647 None:intergenic 50.0%
TGAAGCTCGTTGGGATGAGT+TGG - Chr1:89440426-89440445 MsG0180005272.01.T01:intron 50.0%
TGCCGAGAGTCGTTTACTGA+AGG - Chr1:89440993-89441012 MsG0180005272.01.T01:intron 50.0%
TGGTCCACTGTACTTTGTGG+AGG + Chr1:89438853-89438872 None:intergenic 50.0%
! AAATGTCAGTCCGGCTCGAA+TGG - Chr1:89440315-89440334 MsG0180005272.01.T01:intron 50.0%
! CATAATGGAGGATCTTGGCC+AGG - Chr1:89440547-89440566 MsG0180005272.01.T01:intron 50.0%
! TAGCTATCATTCTGGGGAGG+TGG + Chr1:89438175-89438194 None:intergenic 50.0%
! TTTGGTGGCCAAGATGATGC+TGG - Chr1:89441103-89441122 MsG0180005272.01.T01:intron 50.0%
!! AGAGTTGCTCCTGTTGACTC+TGG - Chr1:89439173-89439192 MsG0180005272.01.T01:intron 50.0%
!! CGGCTCGAATGGATTTTCGA+TGG - Chr1:89440326-89440345 MsG0180005272.01.T01:intron 50.0%
!! CTCCTGTTGACTCTGGATTC+TGG - Chr1:89439180-89439199 MsG0180005272.01.T01:intron 50.0%
!! CTGTTGACTCTGGATTCTGG+TGG - Chr1:89439183-89439202 MsG0180005272.01.T01:intron 50.0%
!!! CTGTTGGTTTTGCAAGGGCT+GGG - Chr1:89437505-89437524 MsG0180005272.01.T01:three_prime_UTR 50.0%
!!! TCTGTTGGTTTTGCAAGGGC+TGG - Chr1:89437504-89437523 MsG0180005272.01.T01:three_prime_UTR 50.0%
ACTCGTTTGCTTGACAGCCG+AGG - Chr1:89437430-89437449 MsG0180005272.01.T01:three_prime_UTR 55.0%
ATCCAATGGTTGCCGATGCC+TGG - Chr1:89437613-89437632 MsG0180005272.01.T01:three_prime_UTR 55.0%
CTCGTTTGAGCCGCATCCAA+TGG - Chr1:89437599-89437618 MsG0180005272.01.T01:three_prime_UTR 55.0%
GAGTTGCGAGCAGATGAAGC+AGG + Chr1:89437582-89437601 None:intergenic 55.0%
GTTGCGAGCAGATGAAGCAG+GGG + Chr1:89437580-89437599 None:intergenic 55.0%
TACTCGCCTGGAGGAAGATC+TGG - Chr1:89437546-89437565 MsG0180005272.01.T01:three_prime_UTR 55.0%
TCCAATGGTTGCCGATGCCT+GGG - Chr1:89437614-89437633 MsG0180005272.01.T01:three_prime_UTR 55.0%
! AGTCGGCTCTCAGTGTTCGA+TGG - Chr1:89437384-89437403 MsG0180005272.01.T01:three_prime_UTR 55.0%
! GCATCGGCAACCATTGGATG+CGG + Chr1:89437612-89437631 None:intergenic 55.0%
! TGTGAGTTGAGAGCACGTGC+TGG - Chr1:89438418-89438437 MsG0180005272.01.T01:CDS 55.0%
!! GCTCGTTGGGATGAGTTGGT+TGG - Chr1:89440430-89440449 MsG0180005272.01.T01:intron 55.0%
CTGGAGGACCCCTCACACTT+GGG - Chr1:89441122-89441141 MsG0180005272.01.T01:intron 60.0%
GGGGTCCTCCAGCATCATCT+TGG + Chr1:89441114-89441133 None:intergenic 60.0%
GGTGGCCAAGATGATGCTGG+AGG - Chr1:89441106-89441125 MsG0180005272.01.T01:intron 60.0%
TCTCGGGTGCAGTGCTCCTA+TGG - Chr1:89440908-89440927 MsG0180005272.01.T01:intron 60.0%
TGGAGGACCCCTCACACTTG+GGG - Chr1:89441123-89441142 MsG0180005272.01.T01:intron 60.0%
!! TCCCAGGCATCGGCAACCAT+TGG + Chr1:89437618-89437637 None:intergenic 60.0%
GCTGGAGGACCCCTCACACT+TGG - Chr1:89441121-89441140 MsG0180005272.01.T01:intron 65.0%
Chromosome Type Strat End Strand Name
Chr1 gene 89437370 89441569 89437370 ID=MsG0180005272.01;Name=MsG0180005272.01
Chr1 mRNA 89437370 89441569 89437370 ID=MsG0180005272.01.T01;Parent=MsG0180005272.01;Name=MsG0180005272.01.T01;_AED=0.49;_eAED=0.52;_QI=0|0.42|0.37|1|0.85|0.75|8|422|500
Chr1 exon 89437370 89437453 89437370 ID=MsG0180005272.01.T01:exon:47761;Parent=MsG0180005272.01.T01
Chr1 exon 89437482 89438019 89437482 ID=MsG0180005272.01.T01:exon:47760;Parent=MsG0180005272.01.T01
Chr1 exon 89438371 89438669 89438371 ID=MsG0180005272.01.T01:exon:47759;Parent=MsG0180005272.01.T01
Chr1 exon 89438738 89438931 89438738 ID=MsG0180005272.01.T01:exon:47758;Parent=MsG0180005272.01.T01
Chr1 exon 89439325 89439436 89439325 ID=MsG0180005272.01.T01:exon:47757;Parent=MsG0180005272.01.T01
Chr1 exon 89439564 89439994 89439564 ID=MsG0180005272.01.T01:exon:47756;Parent=MsG0180005272.01.T01
Chr1 exon 89441205 89441407 89441205 ID=MsG0180005272.01.T01:exon:47755;Parent=MsG0180005272.01.T01
Chr1 exon 89441506 89441569 89441506 ID=MsG0180005272.01.T01:exon:47754;Parent=MsG0180005272.01.T01
Chr1 CDS 89441506 89441569 89441506 ID=MsG0180005272.01.T01:cds;Parent=MsG0180005272.01.T01
Chr1 CDS 89441205 89441407 89441205 ID=MsG0180005272.01.T01:cds;Parent=MsG0180005272.01.T01
Chr1 CDS 89439564 89439994 89439564 ID=MsG0180005272.01.T01:cds;Parent=MsG0180005272.01.T01
Chr1 CDS 89439325 89439436 89439325 ID=MsG0180005272.01.T01:cds;Parent=MsG0180005272.01.T01
Chr1 CDS 89438738 89438931 89438738 ID=MsG0180005272.01.T01:cds;Parent=MsG0180005272.01.T01
Chr1 CDS 89438371 89438669 89438371 ID=MsG0180005272.01.T01:cds;Parent=MsG0180005272.01.T01
Chr1 CDS 89437820 89438019 89437820 ID=MsG0180005272.01.T01:cds;Parent=MsG0180005272.01.T01
Chr1 three_prime_UTR 89437482 89437819 89437482 ID=MsG0180005272.01.T01:three_prime_utr;Parent=MsG0180005272.01.T01
Chr1 three_prime_UTR 89437370 89437453 89437370 ID=MsG0180005272.01.T01:three_prime_utr;Parent=MsG0180005272.01.T01
Gene Sequence

>MsG0180005272.01.T01

ATGGGAATTAGGAAAGTCGGCTCTCAGTGTTCGATGGCTGAGATGGATGATTTCGATCTCACTCATAACTATGACAATTACTCGCCTGGAGGAAGATCTGGTTTTAACACCCCTGCTTCATCTGCTCGCAACTCGTTTGAGCCGCATCCAATGGTTGCCGATGCCTGGGAATCTCTCAGAAAATCTCTAGTCCATTTTAGAGGTGCACCTGTTGGCACAATTGCAGCTGTTGATCATCAAGCAGAGGAAGTTCTAAATTACGATCAGGTTTTTGTTCGAGATTTTGTCCCAAGTGCTCTAGCCTTTTTGATGAATGGTGAACCGGAAATAGTAAAAAATTTCTTGTTAAAGACACTACATCTTCAGGGGTGGGAGAAAAGAGTAGATAGGTTTAAACTTGGGGAAGGTGTGATGCCAGCTAGTTTCAAAGTCCTTCATGATGCCGTTAGGAAAACAGATACTCTTATTGCAGATTTTGGCGAAAGTGCAATCGGAAGAGTTGCTCCTGTTGACTCTGGATTCTGGTGGATCATTTTGCTTCGTGCTTACACAAAATCTACAGGGGACTTAACTCTGTCTGAATCTGATAGTTGTCAAAAAGGAATGAAACTTATATTGACTTTATGCTTGTCAGAGGGGTTTGACACATTTCCAACTCTGCTTTGTGCTGATGGATGCTGCATGATTGATAGAAAATGGTTATGCAAATGCAATTACTTTTGTAACTTGTTACTATTCTTACTCTTATTCAACTATGGGCCTGTTTGGATAAACAAATTGTTTGGAGCTTATAGCACAAGTGCTTATCATGGTGTTTATGGATATCCTATTGAGATTCAAGCACTTTTCTTCATGGCATTGAGAAGTGCTTTGTCCATGCTCAAGCAAGATACTGCTGACGGAAAGGAGTGTGTAGAGCGTGTTGTGAAGCGTTTGCATGCACTAAGTTTTCACATGAGAAGCTACTTTTGGCTTGACTTCCAGCAACTAAATGACATTTATCGAATGGTGTTTGACTTTATGCCAACACGTGGTGGCTACTTCATTGGAAATGTCAGTCCGGCTCGAATGGATTTTCGATGGTTTGCTTTAGGAAACTGTGTTGCAATTCTTTCTTCTTTAGCAACTCCAGAGCAGTCAATGGCAATCATGGATCTTATTGAAGCTCGTTGGGATGAGTTGGTTGGAGAAATGCCGCTAAAAATTAGTTACCCTGCAATAGAAAGTCACGAGTGGCGAATTGTTACTGGTTGTGATCCTAAAAATACCAGATGGAGTTACCATAATGGAGGATCTTGGCCAGTGCTCCTATGGCTTGTAACAGCTGCTTGCATCAAGACAGGGCGACCACAAATAGCAAGACGTGCAATTGAACTTGCCGAGAGTCGTTTACTGAAGGATGGATGGCCTGAATATTACGATGGTAAACTTGGAAGATATGTTGGGAAACAGGCAAGAAATACCAAACATGGTCTATTGCGGGTTATTTGGTGGCCAAGATGA

Protein sequence

>MsG0180005272.01.T01

MGIRKVGSQCSMAEMDDFDLTHNYDNYSPGGRSGFNTPASSARNSFEPHPMVADAWESLRKSLVHFRGAPVGTIAAVDHQAEEVLNYDQVFVRDFVPSALAFLMNGEPEIVKNFLLKTLHLQGWEKRVDRFKLGEGVMPASFKVLHDAVRKTDTLIADFGESAIGRVAPVDSGFWWIILLRAYTKSTGDLTLSESDSCQKGMKLILTLCLSEGFDTFPTLLCADGCCMIDRKWLCKCNYFCNLLLFLLLFNYGPVWINKLFGAYSTSAYHGVYGYPIEIQALFFMALRSALSMLKQDTADGKECVERVVKRLHALSFHMRSYFWLDFQQLNDIYRMVFDFMPTRGGYFIGNVSPARMDFRWFALGNCVAILSSLATPEQSMAIMDLIEARWDELVGEMPLKISYPAIESHEWRIVTGCDPKNTRWSYHNGGSWPVLLWLVTAACIKTGRPQIARRAIELAESRLLKDGWPEYYDGKLGRYVGKQARNTKHGLLRVIWWPR*