AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0180004742.01

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0180004742.01.T01 MTR_2g058550 71.859 398 89 6 82 461 12 404 0.0 569
MsG0180004742.01.T01 MTR_1g085630 76.903 381 24 5 83 462 1 318 0.0 561
MsG0180004742.01.T01 MTR_2g058550 74.054 370 78 4 106 461 1 366 0.0 555
MsG0180004742.01.T01 MTR_7g079140 33.333 171 111 3 111 280 48 216 4.59e-23 102
MsG0180004742.01.T01 MTR_7g032230 30.131 229 147 7 79 299 1 224 3.38e-21 96.3
MsG0180004742.01.T01 MTR_7g075310 33.140 172 110 4 111 280 47 215 4.07e-20 93.2
MsG0180004742.01.T01 MTR_3g104120 29.016 193 130 5 111 299 50 239 1.15e-19 91.7
MsG0180004742.01.T01 MTR_1g016780 28.488 172 118 4 111 280 59 227 8.23e-18 86.3
MsG0180004742.01.T01 MTR_4g101730 25.731 171 124 3 111 280 60 228 4.16e-15 77.0
MsG0180004742.01.T01 MTR_4g101730 25.731 171 124 3 111 280 60 228 1.32e-14 76.3
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0180004742.01.T01 AT1G08750 62.274 387 136 5 83 460 1 386 1.83e-167 477
MsG0180004742.01.T01 AT1G08750 62.274 387 136 5 83 460 1 386 1.83e-167 477
MsG0180004742.01.T01 AT1G08750 62.274 387 136 5 83 460 1 386 1.83e-167 477
MsG0180004742.01.T01 AT2G25940 30.612 196 129 5 108 299 42 234 6.16e-21 95.5
MsG0180004742.01.T01 AT3G20210 26.570 207 145 5 97 299 33 236 7.26e-21 95.5
MsG0180004742.01.T01 AT4G32940 30.244 205 136 5 99 299 48 249 1.98e-20 94.4
MsG0180004742.01.T01 AT1G62710 25.907 193 139 4 89 280 31 220 1.28e-16 82.4

Find 68 sgRNAs with CRISPR-Local

Find 234 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TAGTTTGCACATCTCGTTTC+TGG 0.119799 1:+82012199 MsG0180004742.01.T01:CDS
ACTGATTCAGCCTATAAATT+TGG 0.147417 1:+82012990 MsG0180004742.01.T01:CDS
ATATCAAACTCTTGATTTCT+TGG 0.185291 1:+82012803 MsG0180004742.01.T01:CDS
CTCTGTTGATACTTTCTTCA+TGG 0.193667 1:+82013213 MsG0180004742.01.T01:CDS
CTTCCCTCCTTGTATTTGTT+TGG 0.210251 1:+82009267 MsG0180004742.01.T01:CDS
CATCATTCTGATTCGGATTT+GGG 0.212730 1:+82012756 MsG0180004742.01.T01:CDS
TAAAGGTCCTTTCTATAATA+AGG 0.246415 1:-82012903 None:intergenic
GCATCATTCTGATTCGGATT+TGG 0.257977 1:+82012755 MsG0180004742.01.T01:CDS
CTGATTCAGCCTATAAATTT+GGG 0.266521 1:+82012991 MsG0180004742.01.T01:CDS
TTGGAGAGGATTAATTTATA+TGG 0.279981 1:+82012822 MsG0180004742.01.T01:CDS
AGCTAAAACTATAATGTCTT+TGG 0.302565 1:+82013019 MsG0180004742.01.T01:CDS
TTCCCTCCTTGTATTTGTTT+GGG 0.304087 1:+82009268 MsG0180004742.01.T01:CDS
GAAAGAGAATCACAGGTTTA+AGG 0.305812 1:+82012623 MsG0180004742.01.T01:CDS
GTATAGCAGTTGGACAATTA+TGG 0.325707 1:+82013114 MsG0180004742.01.T01:CDS
GTTTAAGGAGTTGTTGATAA+TGG 0.336924 1:+82012638 MsG0180004742.01.T01:CDS
CGTTTGGACCTTGGAATGTT+TGG 0.337785 1:-82012474 None:intergenic
GGAGTTGAATCCAACAAATA+AGG 0.353896 1:-82012882 None:intergenic
CACCGTAGAGGTTGAGTTTG+TGG 0.356514 1:-82012374 None:intergenic
CAACGATGCACACTAACAAT+TGG 0.361938 1:+82012169 MsG0180004742.01.T01:CDS
TTCGTATAATCCTTATTTGT+TGG 0.374927 1:+82012872 MsG0180004742.01.T01:CDS
CAAAATTCTTCTATCATTGT+CGG 0.378649 1:-82013063 None:intergenic
TTCTGCATTGAATAGCAAAA+TGG 0.379784 1:+82009408 MsG0180004742.01.T01:CDS
CATCTAAACGGCGTTGATAA+AGG 0.389288 1:-82012920 None:intergenic
TTCTCAGATCTTCGTTCACC+TGG 0.394935 1:+82012687 MsG0180004742.01.T01:CDS
TTCGTCGCTAAGGAGTCGTT+TGG 0.400056 1:-82012490 None:intergenic
AACTTTCTACGTCTACTAAC+AGG 0.410335 1:+82012441 MsG0180004742.01.T01:CDS
GTCAGGTCATGGAAGTGATC+AGG 0.445018 1:+82012536 MsG0180004742.01.T01:CDS
TTCAACTCCTTATTATAGAA+AGG 0.448728 1:+82012896 MsG0180004742.01.T01:CDS
CTAAGGAGTCGTTTGGACCT+TGG 0.455445 1:-82012483 None:intergenic
GGGTATCCCTAGTCGCTTAA+CGG 0.458574 1:-82012265 None:intergenic
GCGTTACAAGGCATGTCATC+TGG 0.460074 1:-82012312 None:intergenic
GATAATATTTCTCACAAATA+CGG 0.467650 1:+82012131 MsG0180004742.01.T01:CDS
CATGAGTATGATTCTTTCGT+CGG 0.470197 1:-82012286 None:intergenic
AACGATGCACACTAACAATT+GGG 0.479872 1:+82012170 MsG0180004742.01.T01:CDS
TCTATCATTGTCGGCATCAT+CGG 0.480678 1:-82013054 None:intergenic
TGCATATATTGATAAAGTGT+TGG 0.483446 1:-82012241 None:intergenic
TAACTGTTTCTTGCGTTACA+AGG 0.492716 1:-82012324 None:intergenic
GTATTCGCATCATTCTGATT+CGG 0.504557 1:+82012749 MsG0180004742.01.T01:CDS
ATGAGTATGATTCTTTCGTC+GGG 0.508273 1:-82012285 None:intergenic
GCTATTGGAAGTAGTGTGAA+AGG 0.508877 1:+82012717 MsG0180004742.01.T01:CDS
TGACAGGTACCTCATCTAAA+CGG 0.513890 1:-82012932 None:intergenic
TAAGGAGTTGTTGATAATGG+TGG 0.517063 1:+82012641 MsG0180004742.01.T01:CDS
TGTTACTTCCTTCGTCGCTA+AGG 0.530606 1:-82012500 None:intergenic
ATGAGATGAAAGAGAATCAC+AGG 0.536893 1:+82012616 MsG0180004742.01.T01:CDS
TATGCAACCGTTAAGCGACT+AGG 0.544073 1:+82012258 MsG0180004742.01.T01:CDS
ATGCAACCGTTAAGCGACTA+GGG 0.562582 1:+82012259 MsG0180004742.01.T01:CDS
ATTCATCATCGAAGAGGCGA+TGG 0.562857 1:-82012076 None:intergenic
AACCACAAACTCAACCTCTA+CGG 0.565088 1:+82012372 MsG0180004742.01.T01:CDS
TTGATATACCAACACTCTAT+CGG 0.587156 1:-82009368 None:intergenic
GATGAGGATGGTATAGCAGT+TGG 0.590152 1:+82013104 MsG0180004742.01.T01:CDS
AAACGACTCCTTAGCGACGA+AGG 0.590532 1:+82012492 MsG0180004742.01.T01:CDS
TGATTCAGCCTATAAATTTG+GGG 0.599248 1:+82012992 MsG0180004742.01.T01:CDS
GATTCAGCCTATAAATTTGG+GGG 0.602680 1:+82012993 MsG0180004742.01.T01:CDS
AAACTCTTGATTTCTTGGAG+AGG 0.610273 1:+82012808 MsG0180004742.01.T01:CDS
GTCACGAACCAAACATTCCA+AGG 0.612455 1:+82012466 MsG0180004742.01.T01:CDS
CAACATTAACATCATAGCCA+CGG 0.618311 1:-82012416 None:intergenic
CACCCAAACAAATACAAGGA+GGG 0.619322 1:-82009270 None:intergenic
TTATCAACGCCGTTTAGATG+AGG 0.619731 1:+82012923 MsG0180004742.01.T01:CDS
CTTCCAATAGCTAAAACACC+AGG 0.630965 1:-82012705 None:intergenic
AATACACCCAAACAAATACA+AGG 0.632833 1:-82009274 None:intergenic
CATGAAGAAAGTATCAACAG+AGG 0.640034 1:-82013212 None:intergenic
CTAGGGCAGCAAGACAGTGA+CGG 0.643137 1:+82012053 MsG0180004742.01.T01:intron
GGTGGAATTCATCATCGAAG+AGG 0.670158 1:-82012082 None:intergenic
AAAGTTGAGGTTGATTACCG+TGG 0.670938 1:+82012399 MsG0180004742.01.T01:CDS
AAACCACGATGATGATGATG+AGG 0.672089 1:+82013088 MsG0180004742.01.T01:CDS
CACGATGATGATGATGAGGA+TGG 0.678007 1:+82013092 MsG0180004742.01.T01:CDS
ACACCCAAACAAATACAAGG+AGG 0.699587 1:-82009271 None:intergenic
CATCCTCATCATCATCATCG+TGG 0.713740 1:-82013091 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAAGAAAATTAATTCAATT+CGG - Chr1:82009823-82009842 None:intergenic 10.0%
!! AAAAAAAAAAAAATCGATGA+TGG - Chr1:82011167-82011186 None:intergenic 15.0%
!! AAATTTATAGAGAGAAATTT+AGG - Chr1:82011982-82012001 None:intergenic 15.0%
!! ATTATTAAATTGAATGCAAT+TGG + Chr1:82011495-82011514 MsG0180004742.01.T01:intron 15.0%
!! CAAAAAATGTATAAAGATTA+AGG + Chr1:82010625-82010644 MsG0180004742.01.T01:intron 15.0%
!! TCAAAAACAATAATAACAAT+GGG - Chr1:82011684-82011703 None:intergenic 15.0%
!! TGCTTAAAATAAATTCAATT+TGG - Chr1:82009859-82009878 None:intergenic 15.0%
!! TTATATACGATTATTTGATT+TGG - Chr1:82010282-82010301 None:intergenic 15.0%
!! TTCAAAAACAATAATAACAA+TGG - Chr1:82011685-82011704 None:intergenic 15.0%
!!! ATTGTTATTATTGTTTTTGA+AGG + Chr1:82011684-82011703 MsG0180004742.01.T01:intron 15.0%
!!! ATTTTTTAATCAGATAAGAA+TGG - Chr1:82009330-82009349 None:intergenic 15.0%
!!! GTTTTCATTATTAAAAACTT+GGG - Chr1:82012355-82012374 None:intergenic 15.0%
!!! TTGAGATTTAGAAATATTTT+GGG + Chr1:82010178-82010197 MsG0180004742.01.T01:intron 15.0%
!! AAATAACTAGATTAAAGTTG+TGG + Chr1:82010811-82010830 MsG0180004742.01.T01:intron 20.0%
!! AATAATCATAATATTTGGCT+TGG - Chr1:82009887-82009906 None:intergenic 20.0%
!! ACACTCTTTAATCAATAAAA+GGG - Chr1:82009596-82009615 None:intergenic 20.0%
!! ATAGTAATTTCATCTTTGTT+GGG + Chr1:82010399-82010418 MsG0180004742.01.T01:intron 20.0%
!! GAATAAAAGAAAACATAAAG+TGG + Chr1:82010658-82010677 MsG0180004742.01.T01:intron 20.0%
!! GATAATATTTCTCACAAATA+CGG + Chr1:82012131-82012150 MsG0180004742.01.T01:CDS 20.0%
!! TAAAATCATGTCAATAAAAG+CGG + Chr1:82011939-82011958 MsG0180004742.01.T01:intron 20.0%
!! TTAGATAAGATTCAAATCTA+TGG - Chr1:82010512-82010531 None:intergenic 20.0%
!!! AAATTCAGTTTTTGGATATT+GGG - Chr1:82010075-82010094 None:intergenic 20.0%
!!! ACAAGTTTTAATCAAATCTA+TGG - Chr1:82010587-82010606 None:intergenic 20.0%
!!! AGGAAATAATTTGTTATGTT+GGG - Chr1:82011242-82011261 None:intergenic 20.0%
!!! CAAGTTTTAATCAAATCTAT+GGG - Chr1:82010586-82010605 None:intergenic 20.0%
!!! CTTGAGATTTAGAAATATTT+TGG + Chr1:82010177-82010196 MsG0180004742.01.T01:intron 20.0%
!!! GGTTTTCATTATTAAAAACT+TGG - Chr1:82012356-82012375 None:intergenic 20.0%
!!! TAAATCTTTGTTGTTCATAT+TGG + Chr1:82011722-82011741 MsG0180004742.01.T01:intron 20.0%
!!! TGAGATTTAGAAATATTTTG+GGG + Chr1:82010179-82010198 MsG0180004742.01.T01:intron 20.0%
! AAATCTATCCAATTTGAATC+AGG - Chr1:82011846-82011865 None:intergenic 25.0%
! AATCAGGAGGAAAAATATTA+AGG - Chr1:82011830-82011849 None:intergenic 25.0%
! ACAAAGATGAAATTACTATG+TGG - Chr1:82010398-82010417 None:intergenic 25.0%
! ACAAATTATTTCCTGTTACT+CGG + Chr1:82011248-82011267 MsG0180004742.01.T01:intron 25.0%
! ACTTCTTAACCAAAATCATA+AGG - Chr1:82009472-82009491 None:intergenic 25.0%
! AGCTAAAACTATAATGTCTT+TGG + Chr1:82013019-82013038 MsG0180004742.01.T01:CDS 25.0%
! ATATCAAACTCTTGATTTCT+TGG + Chr1:82012803-82012822 MsG0180004742.01.T01:CDS 25.0%
! ATGAGACTTTGAATTAGATT+TGG - Chr1:82011032-82011051 None:intergenic 25.0%
! ATTTGATATTGCACATACAA+TGG + Chr1:82010974-82010993 MsG0180004742.01.T01:intron 25.0%
! CAAAATTCTTCTATCATTGT+CGG - Chr1:82013066-82013085 None:intergenic 25.0%
! CACACTCTTTAATCAATAAA+AGG - Chr1:82009597-82009616 None:intergenic 25.0%
! CATAAAGTGGATAAAAATTG+AGG + Chr1:82010671-82010690 MsG0180004742.01.T01:intron 25.0%
! CATAGTAATTTCATCTTTGT+TGG + Chr1:82010398-82010417 MsG0180004742.01.T01:intron 25.0%
! CATTATTAAAAACTTGGGAA+GGG - Chr1:82012350-82012369 None:intergenic 25.0%
! CTAATCAATATGAAATCTCA+CGG - Chr1:82009632-82009651 None:intergenic 25.0%
! TAAAGGTCCTTTCTATAATA+AGG - Chr1:82012906-82012925 None:intergenic 25.0%
! TCATTATTAAAAACTTGGGA+AGG - Chr1:82012351-82012370 None:intergenic 25.0%
! TGCATATATTGATAAAGTGT+TGG - Chr1:82012244-82012263 None:intergenic 25.0%
! TTCAACTCCTTATTATAGAA+AGG + Chr1:82012896-82012915 MsG0180004742.01.T01:CDS 25.0%
! TTCTTTCAATTTCCTTTAAG+AGG + Chr1:82010550-82010569 MsG0180004742.01.T01:intron 25.0%
! TTGAGTACTATATAAATGAG+AGG + Chr1:82009434-82009453 MsG0180004742.01.T01:intron 25.0%
! TTGGAGAGGATTAATTTATA+TGG + Chr1:82012822-82012841 MsG0180004742.01.T01:CDS 25.0%
!! AAATTTAGGACACAAGAAAT+TGG - Chr1:82011968-82011987 None:intergenic 25.0%
!! CAGTTTAGTTCATGATTTAT+CGG - Chr1:82009956-82009975 None:intergenic 25.0%
!! GCTTTTATTGACATGATTTT+AGG - Chr1:82011940-82011959 None:intergenic 25.0%
!! TAATGCACAAATTCAGTTTT+TGG - Chr1:82010083-82010102 None:intergenic 25.0%
!! TATTGTCACAAGTATTTTCA+TGG - Chr1:82012106-82012125 None:intergenic 25.0%
!! TCTTTCAATTTCCTTTAAGA+GGG + Chr1:82010551-82010570 MsG0180004742.01.T01:intron 25.0%
!! TTCGTATAATCCTTATTTGT+TGG + Chr1:82012872-82012891 MsG0180004742.01.T01:CDS 25.0%
!!! AACATTCTTTTGTTTATGTC+AGG + Chr1:82012519-82012538 MsG0180004742.01.T01:CDS 25.0%
!!! ATACGATTATTTGATTTGGT+GGG - Chr1:82010278-82010297 None:intergenic 25.0%
!!! ATTTAGAAATATTTTGGGGT+AGG + Chr1:82010183-82010202 MsG0180004742.01.T01:intron 25.0%
!!! CAAATTCAGTTTTTGGATAT+TGG - Chr1:82010076-82010095 None:intergenic 25.0%
!!! CAGGAAATAATTTGTTATGT+TGG - Chr1:82011243-82011262 None:intergenic 25.0%
!!! CTTTTATTGATTAAAGAGTG+TGG + Chr1:82009595-82009614 MsG0180004742.01.T01:intron 25.0%
!!! GGAAATAATTTGTTATGTTG+GGG - Chr1:82011241-82011260 None:intergenic 25.0%
!!! TATACGATTATTTGATTTGG+TGG - Chr1:82010279-82010298 None:intergenic 25.0%
!!! TTATGATTTTGGTTAAGAAG+TGG + Chr1:82009471-82009490 MsG0180004742.01.T01:intron 25.0%
AAACCAAAGACAAATTGTGA+AGG + Chr1:82010697-82010716 MsG0180004742.01.T01:intron 30.0%
AAATTGTGAAGGGAAGAAAA+TGG + Chr1:82010708-82010727 MsG0180004742.01.T01:intron 30.0%
AACAATAATAACAATGGGTC+CGG - Chr1:82011679-82011698 None:intergenic 30.0%
AACCAAAGACAAATTGTGAA+GGG + Chr1:82010698-82010717 MsG0180004742.01.T01:intron 30.0%
AATACACCCAAACAAATACA+AGG - Chr1:82009277-82009296 None:intergenic 30.0%
ACCTACCTTTGTTAGAATTA+GGG + Chr1:82009668-82009687 MsG0180004742.01.T01:intron 30.0%
ATCAAATATCAGCATCTTTG+TGG - Chr1:82010946-82010965 None:intergenic 30.0%
ATGCTTATATCAACTCATCA+AGG - Chr1:82011384-82011403 None:intergenic 30.0%
CAAACAAAAAAGAGAAAGAG+AGG - Chr1:82012005-82012024 None:intergenic 30.0%
CCAAGTGTTAATAAGATTCA+TGG + Chr1:82009550-82009569 MsG0180004742.01.T01:intron 30.0%
CCATGAATCTTATTAACACT+TGG - Chr1:82009553-82009572 None:intergenic 30.0%
CTGATTCAGCCTATAAATTT+GGG + Chr1:82012991-82013010 MsG0180004742.01.T01:CDS 30.0%
CTTGTGATATCTTGATGAAA+CGG + Chr1:82011603-82011622 MsG0180004742.01.T01:intron 30.0%
GAATCTTATTAACACTTGGT+TGG - Chr1:82009549-82009568 None:intergenic 30.0%
GAATGGTTCAATTAATTGCA+TGG + Chr1:82010035-82010054 MsG0180004742.01.T01:intron 30.0%
TACCTACCTTTGTTAGAATT+AGG + Chr1:82009667-82009686 MsG0180004742.01.T01:intron 30.0%
TAGACTTTGAGCAATCATAT+TGG - Chr1:82009508-82009527 None:intergenic 30.0%
TCGGAAAAATACATAAGAAC+CGG - Chr1:82009804-82009823 None:intergenic 30.0%
TGAAGGTTTATGATAGAAAG+TGG + Chr1:82010745-82010764 MsG0180004742.01.T01:intron 30.0%
TGATTCAGCCTATAAATTTG+GGG + Chr1:82012992-82013011 MsG0180004742.01.T01:CDS 30.0%
TGCTGAAGATTTGAATTGAT+TGG + Chr1:82011792-82011811 MsG0180004742.01.T01:intron 30.0%
TGCTTATATCAACTCATCAA+GGG - Chr1:82011383-82011402 None:intergenic 30.0%
TGGAAGGAAAATTAGATTGA+AGG + Chr1:82010728-82010747 MsG0180004742.01.T01:intron 30.0%
TTCTGCATTGAATAGCAAAA+TGG + Chr1:82009408-82009427 MsG0180004742.01.T01:CDS 30.0%
TTGATATACCAACACTCTAT+CGG - Chr1:82009371-82009390 None:intergenic 30.0%
! ACAAATATGAGCTCTAACAT+TGG - Chr1:82010241-82010260 None:intergenic 30.0%
! ACTGATTCAGCCTATAAATT+TGG + Chr1:82012990-82013009 MsG0180004742.01.T01:CDS 30.0%
! CATACATTGCCTTATGATTT+TGG + Chr1:82009460-82009479 MsG0180004742.01.T01:intron 30.0%
! GTTTAAGGAGTTGTTGATAA+TGG + Chr1:82012638-82012657 MsG0180004742.01.T01:CDS 30.0%
! TTTGCAACATTGACACTTTT+AGG - Chr1:82011068-82011087 None:intergenic 30.0%
! TTTTTCCTCCTGATTCAAAT+TGG + Chr1:82011835-82011854 MsG0180004742.01.T01:intron 30.0%
AAACTCTTGATTTCTTGGAG+AGG + Chr1:82012808-82012827 MsG0180004742.01.T01:CDS 35.0%
AAATATCAGCATCTTTGTGG+TGG - Chr1:82010943-82010962 None:intergenic 35.0%
AACGATGCACACTAACAATT+GGG + Chr1:82012170-82012189 MsG0180004742.01.T01:CDS 35.0%
AACTTTCTACGTCTACTAAC+AGG + Chr1:82012441-82012460 MsG0180004742.01.T01:CDS 35.0%
ACCCTAATTCTAACAAAGGT+AGG - Chr1:82009672-82009691 None:intergenic 35.0%
AGTTCGATTCAGTTTGCAAA+CGG + Chr1:82009988-82010007 MsG0180004742.01.T01:intron 35.0%
ATGAGATGAAAGAGAATCAC+AGG + Chr1:82012616-82012635 MsG0180004742.01.T01:CDS 35.0%
ATGAGTATGATTCTTTCGTC+GGG - Chr1:82012288-82012307 None:intergenic 35.0%
ATTATTTCCTGTTACTCGGA+AGG + Chr1:82011252-82011271 MsG0180004742.01.T01:intron 35.0%
CAACATTAACATCATAGCCA+CGG - Chr1:82012419-82012438 None:intergenic 35.0%
CATGAGTATGATTCTTTCGT+CGG - Chr1:82012289-82012308 None:intergenic 35.0%
CCAAGATGTTAACATTTGAG+AGG - Chr1:82010308-82010327 None:intergenic 35.0%
CCTCTCAAATGTTAACATCT+TGG + Chr1:82010305-82010324 MsG0180004742.01.T01:intron 35.0%
CTCAAATGTTAACATCTTGG+TGG + Chr1:82010308-82010327 MsG0180004742.01.T01:intron 35.0%
CTCTGTTGATACTTTCTTCA+TGG + Chr1:82013213-82013232 MsG0180004742.01.T01:CDS 35.0%
GAAAGAGAATCACAGGTTTA+AGG + Chr1:82012623-82012642 MsG0180004742.01.T01:CDS 35.0%
GAACACCCTAATTCTAACAA+AGG - Chr1:82009676-82009695 None:intergenic 35.0%
GATCCAAAAAAATCTGTGAC+AGG - Chr1:82012951-82012970 None:intergenic 35.0%
GATGATATGATCCATCCAAT+GGG - Chr1:82010893-82010912 None:intergenic 35.0%
GATTCAGCCTATAAATTTGG+GGG + Chr1:82012993-82013012 MsG0180004742.01.T01:CDS 35.0%
GGAGTTGAATCCAACAAATA+AGG - Chr1:82012885-82012904 None:intergenic 35.0%
GTATAGCAGTTGGACAATTA+TGG + Chr1:82013114-82013133 MsG0180004742.01.T01:CDS 35.0%
GTATTCGCATCATTCTGATT+CGG + Chr1:82012749-82012768 MsG0180004742.01.T01:CDS 35.0%
TATAGCTGCATTCCAATCTT+TGG + Chr1:82010466-82010485 MsG0180004742.01.T01:intron 35.0%
TCTATCCAATTTGAATCAGG+AGG - Chr1:82011843-82011862 None:intergenic 35.0%
TGAATGCAATTGGTTGTTTG+CGG + Chr1:82011505-82011524 MsG0180004742.01.T01:intron 35.0%
TGATGATATGATCCATCCAA+TGG - Chr1:82010894-82010913 None:intergenic 35.0%
TGCATCTCGAACTGTTATAA+TGG + Chr1:82009769-82009788 MsG0180004742.01.T01:intron 35.0%
TTATTTCCTGTTACTCGGAA+GGG + Chr1:82011253-82011272 MsG0180004742.01.T01:intron 35.0%
TTCCCTCCTTGTATTTGTTT+GGG + Chr1:82009268-82009287 MsG0180004742.01.T01:CDS 35.0%
TTCCCTTCACAATTTGTCTT+TGG - Chr1:82010703-82010722 None:intergenic 35.0%
! ACATTGACACTTTTAGGCTT+TGG - Chr1:82011062-82011081 None:intergenic 35.0%
! ACTCATCAAGGGTTTGAAAT+TGG - Chr1:82011372-82011391 None:intergenic 35.0%
! ATTGATGCTTTTGTGTGCTA+TGG + Chr1:82013173-82013192 MsG0180004742.01.T01:CDS 35.0%
! CAATTTTACCGATAGAGTGT+TGG + Chr1:82009360-82009379 MsG0180004742.01.T01:CDS 35.0%
! CTATGGTTTCATATTTGCTG+AGG - Chr1:82010495-82010514 None:intergenic 35.0%
! TAACTGTTTCTTGCGTTACA+AGG - Chr1:82012327-82012346 None:intergenic 35.0%
! TGTCACAAGTATTTTCATGG+TGG - Chr1:82012103-82012122 None:intergenic 35.0%
! TGTTAGAATTAGGGTGTTCA+TGG + Chr1:82009677-82009696 MsG0180004742.01.T01:intron 35.0%
!! ATTTGGTGGGCTATTAGATT+AGG - Chr1:82010265-82010284 None:intergenic 35.0%
!! CATCATTCTGATTCGGATTT+GGG + Chr1:82012756-82012775 MsG0180004742.01.T01:CDS 35.0%
!! CATGAAGAAAGTATCAACAG+AGG - Chr1:82013215-82013234 None:intergenic 35.0%
!! CTTTTGTTTATGTCAGGTCA+TGG + Chr1:82012525-82012544 MsG0180004742.01.T01:CDS 35.0%
!! TAAGGAGTTGTTGATAATGG+TGG + Chr1:82012641-82012660 MsG0180004742.01.T01:CDS 35.0%
!! TATTAACACTTGGTTGGTCT+CGG - Chr1:82009543-82009562 None:intergenic 35.0%
!!! CATTTCGGTTGTTTTTGGAA+TGG + Chr1:82010018-82010037 MsG0180004742.01.T01:intron 35.0%
!!! GTACCTGTCACAGATTTTTT+TGG + Chr1:82012945-82012964 MsG0180004742.01.T01:CDS 35.0%
!!! TGATCAGGTTTTGAAGTTTC+AGG + Chr1:82012551-82012570 MsG0180004742.01.T01:CDS 35.0%
AACCACAAACTCAACCTCTA+CGG + Chr1:82012372-82012391 MsG0180004742.01.T01:CDS 40.0%
ACACCCAAACAAATACAAGG+AGG - Chr1:82009274-82009293 None:intergenic 40.0%
AGCTCTTCCCCCAAATTTAT+AGG - Chr1:82013003-82013022 None:intergenic 40.0%
CAACGATGCACACTAACAAT+TGG + Chr1:82012169-82012188 MsG0180004742.01.T01:CDS 40.0%
CACCCAAACAAATACAAGGA+GGG - Chr1:82009273-82009292 None:intergenic 40.0%
CTTCCAATAGCTAAAACACC+AGG - Chr1:82012708-82012727 None:intergenic 40.0%
CTTCCCTCCTTGTATTTGTT+TGG + Chr1:82009267-82009286 MsG0180004742.01.T01:CDS 40.0%
GAAGGGAGGGTAAATTTCAA+TGG + Chr1:82011270-82011289 MsG0180004742.01.T01:intron 40.0%
GCACTGTAGTTAGTCACATA+TGG - Chr1:82011630-82011649 None:intergenic 40.0%
GCTATTGGAAGTAGTGTGAA+AGG + Chr1:82012717-82012736 MsG0180004742.01.T01:CDS 40.0%
GTTATAATGGTTCACTGCAC+CGG + Chr1:82009782-82009801 MsG0180004742.01.T01:intron 40.0%
TCTATCATTGTCGGCATCAT+CGG - Chr1:82013057-82013076 None:intergenic 40.0%
TGACAGGTACCTCATCTAAA+CGG - Chr1:82012935-82012954 None:intergenic 40.0%
TGGGGTAGGATGTAGAATTT+GGG + Chr1:82010197-82010216 MsG0180004742.01.T01:intron 40.0%
TGTGAAGGGAAGAAAATGGA+AGG + Chr1:82010712-82010731 MsG0180004742.01.T01:intron 40.0%
TTATCAACGCCGTTTAGATG+AGG + Chr1:82012923-82012942 MsG0180004742.01.T01:CDS 40.0%
TTGGGGTAGGATGTAGAATT+TGG + Chr1:82010196-82010215 MsG0180004742.01.T01:intron 40.0%
! AAACCACGATGATGATGATG+AGG + Chr1:82013088-82013107 MsG0180004742.01.T01:CDS 40.0%
! AAAGTTGAGGTTGATTACCG+TGG + Chr1:82012399-82012418 MsG0180004742.01.T01:CDS 40.0%
! GAGCAATCATATTGGTGACT+TGG - Chr1:82009500-82009519 None:intergenic 40.0%
! TAGTTTGCACATCTCGTTTC+TGG + Chr1:82012199-82012218 MsG0180004742.01.T01:CDS 40.0%
! TTTGTTGGGTTTTCCATCGT+TGG + Chr1:82010413-82010432 MsG0180004742.01.T01:intron 40.0%
!! ATTAACACTTGGTTGGTCTC+GGG - Chr1:82009542-82009561 None:intergenic 40.0%
!! CATCTAAACGGCGTTGATAA+AGG - Chr1:82012923-82012942 None:intergenic 40.0%
!! GAGTTGATATAAGCATGCAG+CGG + Chr1:82011388-82011407 MsG0180004742.01.T01:intron 40.0%
!! GCATCATTCTGATTCGGATT+TGG + Chr1:82012755-82012774 MsG0180004742.01.T01:CDS 40.0%
!! GGTCACATTTCGGTTGTTTT+TGG + Chr1:82010013-82010032 MsG0180004742.01.T01:intron 40.0%
!!! GGTTTTGAAGTTTCAGGAGA+AGG + Chr1:82012557-82012576 MsG0180004742.01.T01:CDS 40.0%
!!! TCACCTGGTGTTTTAGCTAT+TGG + Chr1:82012702-82012721 MsG0180004742.01.T01:CDS 40.0%
AGGATGTAGAATTTGGGGGT+AGG + Chr1:82010203-82010222 MsG0180004742.01.T01:intron 45.0%
ATGCAACCGTTAAGCGACTA+GGG + Chr1:82012259-82012278 MsG0180004742.01.T01:CDS 45.0%
ATTCATCATCGAAGAGGCGA+TGG - Chr1:82012079-82012098 None:intergenic 45.0%
CATCCTCATCATCATCATCG+TGG - Chr1:82013094-82013113 None:intergenic 45.0%
CCTCTACGGTGAAAAAGTTG+AGG + Chr1:82012386-82012405 MsG0180004742.01.T01:CDS 45.0%
CGATTCAGTTTGCAAACGGT+TGG + Chr1:82009992-82010011 MsG0180004742.01.T01:intron 45.0%
CGTTTGGACCTTGGAATGTT+TGG - Chr1:82012477-82012496 None:intergenic 45.0%
GATGAGGATGGTATAGCAGT+TGG + Chr1:82013104-82013123 MsG0180004742.01.T01:CDS 45.0%
GCATGTTGAATTGCACCCAT+TGG + Chr1:82010875-82010894 MsG0180004742.01.T01:intron 45.0%
GGGGTAGGATGTAGAATTTG+GGG + Chr1:82010198-82010217 MsG0180004742.01.T01:intron 45.0%
GGGTAGGATGTAGAATTTGG+GGG + Chr1:82010199-82010218 MsG0180004742.01.T01:intron 45.0%
GGTGCTTGAAACCCTCTTAA+AGG - Chr1:82010565-82010584 None:intergenic 45.0%
GGTGGAATTCATCATCGAAG+AGG - Chr1:82012085-82012104 None:intergenic 45.0%
GTCACGAACCAAACATTCCA+AGG + Chr1:82012466-82012485 MsG0180004742.01.T01:CDS 45.0%
GTTGAATTGCACCCATTGGA+TGG + Chr1:82010879-82010898 MsG0180004742.01.T01:intron 45.0%
GTTGGAAAGTGGCTATGTCA+AGG + Chr1:82010431-82010450 MsG0180004742.01.T01:intron 45.0%
TATGCAACCGTTAAGCGACT+AGG + Chr1:82012258-82012277 MsG0180004742.01.T01:CDS 45.0%
TGCAATTGGTTGTTTGCGGT+CGG + Chr1:82011509-82011528 MsG0180004742.01.T01:intron 45.0%
TGTTCGGCTGAAAGATGTGA+CGG - Chr1:82011652-82011671 None:intergenic 45.0%
TTCTCAGATCTTCGTTCACC+TGG + Chr1:82012687-82012706 MsG0180004742.01.T01:CDS 45.0%
TTGCTGAGGTCTCCAAAGAT+TGG - Chr1:82010481-82010500 None:intergenic 45.0%
TTGGACCGTCCTATCAAGAT+CGG + Chr1:82011537-82011556 MsG0180004742.01.T01:intron 45.0%
! ACATAGCCACTTTCCAACGA+TGG - Chr1:82010429-82010448 None:intergenic 45.0%
! CACGATGATGATGATGAGGA+TGG + Chr1:82013092-82013111 MsG0180004742.01.T01:CDS 45.0%
! GCAAACGGTTGGTCACATTT+CGG + Chr1:82010003-82010022 MsG0180004742.01.T01:intron 45.0%
! GGTTTTCCATCGTTGGAAAG+TGG + Chr1:82010420-82010439 MsG0180004742.01.T01:intron 45.0%
! TGTTACTTCCTTCGTCGCTA+AGG - Chr1:82012503-82012522 None:intergenic 45.0%
!! CAGTTATATGGCTCGGTCTA+GGG - Chr1:82010917-82010936 None:intergenic 45.0%
!! TTAACACTTGGTTGGTCTCG+GGG - Chr1:82009541-82009560 None:intergenic 45.0%
!! TTGTGGTGGACGCAGTTATA+TGG - Chr1:82010929-82010948 None:intergenic 45.0%
!!! CCTCAACTTTTTCACCGTAG+AGG - Chr1:82012389-82012408 None:intergenic 45.0%
!! TCAAAAAAAAAAAAAAATAT+TGG + Chr1:82011758-82011777 MsG0180004742.01.T01:intron 5.0%
!!! ATATTTTTTTTTTTTTTTGA+AGG - Chr1:82011758-82011777 None:intergenic 5.0%
!!! TTTTAAATAATCATAATATT+TGG - Chr1:82009892-82009911 None:intergenic 5.0%
AAACGACTCCTTAGCGACGA+AGG + Chr1:82012492-82012511 MsG0180004742.01.T01:CDS 50.0%
CACCGTAGAGGTTGAGTTTG+TGG - Chr1:82012377-82012396 None:intergenic 50.0%
CTAAGGAGTCGTTTGGACCT+TGG - Chr1:82012486-82012505 None:intergenic 50.0%
CTCGTCCGATCTTGATAGGA+CGG - Chr1:82011545-82011564 None:intergenic 50.0%
GAGTCTCGTCCGATCTTGAT+AGG - Chr1:82011549-82011568 None:intergenic 50.0%
GCGTTACAAGGCATGTCATC+TGG - Chr1:82012315-82012334 None:intergenic 50.0%
GGGTATCCCTAGTCGCTTAA+CGG - Chr1:82012268-82012287 None:intergenic 50.0%
GTCAGGTCATGGAAGTGATC+AGG + Chr1:82012536-82012555 MsG0180004742.01.T01:CDS 50.0%
GTGGACGCAGTTATATGGCT+CGG - Chr1:82010924-82010943 None:intergenic 50.0%
TCTTTCAGCCGAACACAAGC+CGG + Chr1:82011657-82011676 MsG0180004742.01.T01:intron 50.0%
TTCCTGTTACTCGGAAGGGA+GGG + Chr1:82011257-82011276 MsG0180004742.01.T01:intron 50.0%
TTCGTCGCTAAGGAGTCGTT+TGG - Chr1:82012493-82012512 None:intergenic 50.0%
TTGTTTGCGGTCGGTCACAT+TGG + Chr1:82011518-82011537 MsG0180004742.01.T01:intron 50.0%
TTTCCTGTTACTCGGAAGGG+AGG + Chr1:82011256-82011275 MsG0180004742.01.T01:intron 50.0%
!! GCAGTTATATGGCTCGGTCT+AGG - Chr1:82010918-82010937 None:intergenic 50.0%
ATCTCCGCCAAGAGACCCTA+GGG + Chr1:82012036-82012055 MsG0180004742.01.T01:intron 55.0%
CTAGGGCAGCAAGACAGTGA+CGG + Chr1:82012053-82012072 MsG0180004742.01.T01:intron 55.0%
GTCACTGTCTTGCTGCCCTA+GGG - Chr1:82012054-82012073 None:intergenic 55.0%
TACCCTCCCTTCCGAGTAAC+AGG - Chr1:82011262-82011281 None:intergenic 55.0%
! CAATGGGTCCGGCTTGTGTT+CGG - Chr1:82011668-82011687 None:intergenic 55.0%
AGGGTCTCTTGGCGGAGATG+AGG - Chr1:82012035-82012054 None:intergenic 60.0%
CATCTCCGCCAAGAGACCCT+AGG + Chr1:82012035-82012054 MsG0180004742.01.T01:intron 60.0%
CGTCACTGTCTTGCTGCCCT+AGG - Chr1:82012055-82012074 None:intergenic 60.0%
CTTGCTGCCCTAGGGTCTCT+TGG - Chr1:82012046-82012065 None:intergenic 60.0%
GCTGCCCTAGGGTCTCTTGG+CGG - Chr1:82012043-82012062 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
Chr1 gene 82009235 82013247 82009235 ID=MsG0180004742.01;Name=MsG0180004742.01
Chr1 mRNA 82009235 82013247 82009235 ID=MsG0180004742.01.T01;Parent=MsG0180004742.01;Name=MsG0180004742.01.T01;_AED=0.50;_eAED=0.51;_QI=0|0.66|0.7|1|0.77|0.8|10|0|462
Chr1 exon 82009235 82009437 82009235 ID=MsG0180004742.01.T01:exon:34593;Parent=MsG0180004742.01.T01
Chr1 exon 82012062 82013247 82012062 ID=MsG0180004742.01.T01:exon:34594;Parent=MsG0180004742.01.T01
Chr1 CDS 82009235 82009437 82009235 ID=MsG0180004742.01.T01:cds;Parent=MsG0180004742.01.T01
Chr1 CDS 82012062 82013247 82012062 ID=MsG0180004742.01.T01:cds;Parent=MsG0180004742.01.T01
Gene Sequence

>MsG0180004742.01.T01

ATGTTCTTTCTTCATATGATATTTTATATACACTTCCCTCCTTGTATTTGTTTGGGTGTATTTAACATTTCATTAATTATGTTAAGACTTGACCATTCTTATCTGATTAAAAAATTGATTATCATCAATTTTACCGATAGAGTGTTGGTATATCAATCAAGTGAGAGTAAGAGTTCTGCATTGAATAGCAAAATGGATATTGACAAGACAGTGACGGCCATCGCCTCTTCGATGATGAATTCCACCATGAAAATACTTGTGACAATATTGCTGATAATATTTCTCACAAATACGGCAGAATCTTCTTCTTCAACGATGCACACTAACAATTGGGCTGTTTTAGTTTGCACATCTCGTTTCTGGTTCAATTATCGACACATAGCCAACACTTTATCAATATATGCAACCGTTAAGCGACTAGGGATACCCGACGAAAGAATCATACTCATGCTACCAGATGACATGCCTTGTAACGCAAGAAACAGTTACCCTTCCCAAGTTTTTAATAATGAAAACCACAAACTCAACCTCTACGGTGAAAAAGTTGAGGTTGATTACCGTGGCTATGATGTTAATGTTGAAAACTTTCTACGTCTACTAACAGGTCGTCACGAACCAAACATTCCAAGGTCCAAACGACTCCTTAGCGACGAAGGAAGTAACATTCTTTTGTTTATGTCAGGTCATGGAAGTGATCAGGTTTTGAAGTTTCAGGAGAAGGAAGATCTTTATAGCAAAGATTTAGCTGATGCTGTGAATGAGATGAAAGAGAATCACAGGTTTAAGGAGTTGTTGATAATGGTGGATACTTGTCAAGCTGCTACTCTTTTCTCAGATCTTCGTTCACCTGGTGTTTTAGCTATTGGAAGTAGTGTGAAAGGAGAGAGTTCGTATTCGCATCATTCTGATTCGGATTTGGGTGTTTCTGTTGTTGATCGTTTTACATATCAAACTCTTGATTTCTTGGAGAGGATTAATTTATATGGTAATGATTCTTTAAGTAGTCTTTTTGATTCGTATAATCCTTATTTGTTGGATTCAACTCCTTATTATAGAAAGGACCTTTATCAACGCCGTTTAGATGAGGTACCTGTCACAGATTTTTTTGGATCTGTAATGAACACAATAGACACTGATTCAGCCTATAAATTTGGGGGAAGAGCTAAAACTATAATGTCTTTGGATCAATCAATCTCCGATGATGCCGACAATGATAGAAGAATTTTGAGAAACCACGATGATGATGATGAGGATGGTATAGCAGTTGGACAATTATGGAGTACTATTGTTAGTAAAGTGAATACTTTTGAAAGTATTGATGCTTTTGTGTGCTATGGTCTTCTTTCTATGCTTCCTCTGTTGATACTTTCTTCATGGCTATCATTGTAG
Protein sequence

>MsG0180004742.01.T01

MFFLHMIFYIHFPPCICLGVFNISLIMLRLDHSYLIKKLIIINFTDRVLVYQSSESKSSALNSKMDIDKTVTAIASSMMNSTMKILVTILLIIFLTNTAESSSSTMHTNNWAVLVCTSRFWFNYRHIANTLSIYATVKRLGIPDERIILMLPDDMPCNARNSYPSQVFNNENHKLNLYGEKVEVDYRGYDVNVENFLRLLTGRHEPNIPRSKRLLSDEGSNILLFMSGHGSDQVLKFQEKEDLYSKDLADAVNEMKENHRFKELLIMVDTCQAATLFSDLRSPGVLAIGSSVKGESSYSHHSDSDLGVSVVDRFTYQTLDFLERINLYGNDSLSSLFDSYNPYLLDSTPYYRKDLYQRRLDEVPVTDFFGSVMNTIDTDSAYKFGGRAKTIMSLDQSISDDADNDRRILRNHDDDDEDGIAVGQLWSTIVSKVNTFESIDAFVCYGLLSMLPLLILSSWLSL*