AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0880046446.01

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0880046446.01.T01 MTR_4g108350 62.428 173 7 2 38 162 11 173 4.51e-62 189
MsG0880046446.01.T01 MTR_4g108350 57.471 174 5 3 38 162 11 164 1.04e-53 167
MsG0880046446.01.T01 MTR_5g039530 59.494 79 22 1 32 110 2 70 2.07e-25 96.3
MsG0880046446.01.T01 MTR_5g091800 70.370 54 16 0 58 111 13 66 2.61e-19 79.7
MsG0880046446.01.T01 MTR_3g452470 66.667 54 18 0 58 111 13 66 8.73e-19 78.6
MsG0880046446.01.T01 MTR_8g096670 64.000 50 18 0 62 111 7 56 8.18e-17 71.6
MsG0880046446.01.T01 MTR_8g096670 64.000 50 18 0 62 111 17 66 9.28e-17 72.0
MsG0880046446.01.T01 MTR_3g099010 60.000 50 20 0 62 111 17 66 1.01e-14 67.8
MsG0880046446.01.T01 MTR_4g093280 30.827 133 46 3 62 148 20 152 1.44e-11 61.6
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0880046446.01.T01 AT1G74520 46.196 184 36 3 32 162 2 175 4.29e-43 141
MsG0880046446.01.T01 AT1G74520 46.196 184 36 3 32 162 2 175 4.29e-43 141
MsG0880046446.01.T01 AT1G69700 36.316 190 53 4 31 162 3 182 1.14e-29 107
MsG0880046446.01.T01 AT5G62490 60.000 80 22 1 32 111 2 71 1.01e-23 91.7
MsG0880046446.01.T01 AT2G42820 64.000 50 18 0 62 111 17 66 8.00e-17 73.6
MsG0880046446.01.T01 AT5G50720 66.000 50 17 0 62 111 17 66 2.22e-16 71.2
MsG0880046446.01.T01 AT4G24960 54.000 50 23 0 62 111 17 66 2.86e-14 66.2
MsG0880046446.01.T01 AT4G24960 56.522 46 20 0 66 111 2 47 1.75e-12 61.6

Find 57 sgRNAs with CRISPR-Local

Find 211 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GGTATACCATTCAAGAATTT+TGG 0.138822 8:+73478678 None:intergenic
AAGCCATCGTTATTAAAGTA+TGG 0.240142 8:-73477411 MsG0880046446.01.T01:three_prime_UTR
TGCAGGCTGATAAATCTAAA+TGG 0.244593 8:-73477724 MsG0880046446.01.T01:intron
ATGCTTCTGTTCCATTCTCT+TGG 0.314598 8:+73477843 None:intergenic
GCTTCTGCCTCTTGTGGATA+AGG 0.336708 8:-73477649 MsG0880046446.01.T01:three_prime_UTR
ATCAACAGTGGCTAACCTAT+TGG 0.338612 8:-73478741 MsG0880046446.01.T01:CDS
TCTGGTATGTTCCAGGAAAA+AGG 0.338718 8:-73477915 MsG0880046446.01.T01:intron
TATTAAAGTATGGGTGTGTT+TGG 0.346356 8:-73477401 None:intergenic
CTTCTGCCTCTTGTGGATAA+GGG 0.348474 8:-73477648 MsG0880046446.01.T01:three_prime_UTR
TCAACAGTGGCTAACCTATT+GGG 0.372553 8:-73478740 MsG0880046446.01.T01:CDS
GATGGGTGGCTTGGAGGATC+TGG 0.394116 8:-73479127 MsG0880046446.01.T01:CDS
GCAGGCTGATAAATCTAAAT+GGG 0.400706 8:-73477723 MsG0880046446.01.T01:intron
CTCCAGATATGCTTCGGTTA+GGG 0.429295 8:-73478791 MsG0880046446.01.T01:intron
CCTTTGCATCCGGTTGCATT+CGG 0.436307 8:-73480147 MsG0880046446.01.T01:intron
AGGTCTCATCATACATTGTA+TGG 0.438227 8:+73477690 None:intergenic
TATACCGACGAATCCCCTTC+AGG 0.439460 8:+73480172 None:intergenic
GCTACAAGATTGCATTCAAT+AGG 0.452212 8:+73477670 None:intergenic
CAATGAATACAAAACCCAAT+AGG 0.456561 8:+73478726 None:intergenic
GCAGCAGTTATAATGTCATC+TGG 0.464513 8:+73477878 None:intergenic
TCGGTATAACCCTTTGCATC+CGG 0.469219 8:-73480157 MsG0880046446.01.T01:CDS
ACTCCAGATATGCTTCGGTT+AGG 0.470884 8:-73478792 MsG0880046446.01.T01:intron
TGGCTTGGAGGATCTGGTGC+CGG 0.479798 8:-73479121 MsG0880046446.01.T01:CDS
TTATGTCAACCGAATGCAAC+CGG 0.483611 8:+73480138 None:intergenic
AAAACCTTAAATATCCTCCT+TGG 0.495022 8:+73477582 None:intergenic
CTTGTAGCTTCTGCCTCTTG+TGG 0.495195 8:-73477655 MsG0880046446.01.T01:three_prime_UTR
TCAAAAGATGGGTGGCTTGG+AGG 0.495726 8:-73479133 MsG0880046446.01.T01:intron
CCGAATGCAACCGGATGCAA+AGG 0.501099 8:+73480147 None:intergenic
ACTGTACTCCAGATATGCTT+CGG 0.503546 8:-73478797 MsG0880046446.01.T01:intron
AGATCAAAAGATGGGTGGCT+TGG 0.508036 8:-73479136 MsG0880046446.01.T01:intron
GAGAAGTACATCCAAGAGAA+TGG 0.508499 8:-73477854 MsG0880046446.01.T01:CDS
TTCTGCCTCTTGTGGATAAG+GGG 0.522312 8:-73477647 MsG0880046446.01.T01:three_prime_UTR
CATTTGAGAATCTGATCCAT+AGG 0.534447 8:-73477823 MsG0880046446.01.T01:CDS
TTTGATGTAAGTGGCTGGGT+AGG 0.546334 8:-73479070 MsG0880046446.01.T01:CDS
CACCCATACTTTAATAACGA+TGG 0.546460 8:+73477408 None:intergenic
AGCCATCGTTATTAAAGTAT+GGG 0.547951 8:-73477410 MsG0880046446.01.T01:three_prime_UTR
AGGATTCCATTGTATCCTGA+AGG 0.574817 8:-73480187 MsG0880046446.01.T01:CDS
GATTCCATTGTATCCTGAAG+GGG 0.581884 8:-73480185 MsG0880046446.01.T01:CDS
TAGCCACTGTTGATCATCCA+CGG 0.583333 8:+73478750 None:intergenic
ATTTGAGAATCTGATCCATA+GGG 0.594382 8:-73477822 MsG0880046446.01.T01:intron
AGCCACTGTTGATCATCCAC+GGG 0.594983 8:+73478751 None:intergenic
GGATTCCATTGTATCCTGAA+GGG 0.596334 8:-73480186 MsG0880046446.01.T01:CDS
AAGAACCATGAGAAAACGAC+CGG 0.599039 8:+73479102 None:intergenic
GGCTGATAAATCTAAATGGG+GGG 0.601670 8:-73477720 MsG0880046446.01.T01:CDS
ACGAACCCCTTATCCACAAG+AGG 0.605962 8:+73477642 None:intergenic
ATATGATATATAGATGATGT+TGG 0.606486 8:-73477479 MsG0880046446.01.T01:three_prime_UTR
CGAATGCAACCGGATGCAAA+GGG 0.608749 8:+73480148 None:intergenic
GAATCCCCTTCAGGATACAA+TGG 0.616494 8:+73480181 None:intergenic
TGAATGTGCAAGTCGCGTCA+AGG 0.619485 8:-73480207 MsG0880046446.01.T01:CDS
GGATAAACAAGACTAATCAC+AGG 0.636906 8:+73478924 None:intergenic
GTATCCTGAAGGGGATTCGT+CGG 0.638668 8:-73480176 MsG0880046446.01.T01:CDS
CAACAAGATCAAAAGATGGG+TGG 0.641691 8:-73479141 MsG0880046446.01.T01:intron
AGGCTGATAAATCTAAATGG+GGG 0.641697 8:-73477721 MsG0880046446.01.T01:CDS
GCTGATAAATCTAAATGGGG+GGG 0.653538 8:-73477719 MsG0880046446.01.T01:CDS
CAGGCTGATAAATCTAAATG+GGG 0.661207 8:-73477722 MsG0880046446.01.T01:CDS
AATTGAGAGCAAGTCTCCCG+TGG 0.662927 8:-73478767 MsG0880046446.01.T01:CDS
AGATGATGTTGGTACAACAG+TGG 0.671646 8:-73477468 MsG0880046446.01.T01:three_prime_UTR
CTCCCGTGGATGATCAACAG+TGG 0.706862 8:-73478753 MsG0880046446.01.T01:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAATATACTTTATATTTAAC+TGG - Chr8:73479420-73479439 MsG0880046446.01.T01:intron 10.0%
!! AATAATGATTGATAAATATT+TGG + Chr8:73479207-73479226 None:intergenic 10.0%
!!! TTTTTAATGAATTTTCTTTT+GGG - Chr8:73479097-73479116 MsG0880046446.01.T01:CDS 10.0%
!!! TTTTTTAATGAATTTTCTTT+TGG - Chr8:73479096-73479115 MsG0880046446.01.T01:CDS 10.0%
!! AAAATAAGTAAAAGAAATGT+TGG + Chr8:73478281-73478300 None:intergenic 15.0%
!! AATAAGTGAAAATCATAAAA+AGG + Chr8:73478957-73478976 None:intergenic 15.0%
!! ATAAGTGAAAATCATAAAAA+GGG + Chr8:73478956-73478975 None:intergenic 15.0%
!!! ATTTTCACAATATATATTTC+AGG - Chr8:73479541-73479560 MsG0880046446.01.T01:intron 15.0%
!! AACAAAAAAAAAATCGTAAG+AGG + Chr8:73478599-73478618 None:intergenic 20.0%
!! ACAATATTAGTAAATCACAA+CGG + Chr8:73479374-73479393 None:intergenic 20.0%
!! ACTAATTGTCACATATTAAA+GGG + Chr8:73478729-73478748 None:intergenic 20.0%
!! ATATGATATATAGATGATGT+TGG - Chr8:73480127-73480146 MsG0880046446.01.T01:intron 20.0%
!! TACATAATACTAATGATCTA+AGG + Chr8:73477669-73477688 None:intergenic 20.0%
!!! AGTTTAAATTTTAGCTTTGT+TGG - Chr8:73479011-73479030 MsG0880046446.01.T01:intron 20.0%
!!! ATTTTGATTTGAAAGATGAA+TGG + Chr8:73478196-73478215 None:intergenic 20.0%
!!! TATTTAGTTTATGTTTTCCA+AGG - Chr8:73480007-73480026 MsG0880046446.01.T01:intron 20.0%
!!! TGTTTTTTTTCCTCTTAAAA+TGG - Chr8:73477978-73477997 MsG0880046446.01.T01:intron 20.0%
!!! TTATGATTTTCACTTATTCA+GGG - Chr8:73478959-73478978 MsG0880046446.01.T01:intron 20.0%
!!! TTTATGATTTTCACTTATTC+AGG - Chr8:73478958-73478977 MsG0880046446.01.T01:intron 20.0%
!!! TTTTATGAGTATGTTTAGAA+GGG - Chr8:73479491-73479510 MsG0880046446.01.T01:intron 20.0%
!!! TTTTGATTTGAAAGATGAAT+GGG + Chr8:73478195-73478214 None:intergenic 20.0%
! AAAAAAGGACAAATTGAAGT+CGG - Chr8:73478061-73478080 MsG0880046446.01.T01:intron 25.0%
! AATCAACAAGATCAAAAGAT+GGG - Chr8:73478462-73478481 MsG0880046446.01.T01:intron 25.0%
! AGTTACACGACAAAAAATAA+AGG + Chr8:73480056-73480075 None:intergenic 25.0%
! ATCTTAAGAAAATGTGGTTA+AGG - Chr8:73479066-73479085 MsG0880046446.01.T01:CDS 25.0%
! CACTAATTGTCACATATTAA+AGG + Chr8:73478730-73478749 None:intergenic 25.0%
! GAAAGGAATAAGAAAAAAAG+TGG + Chr8:73478316-73478335 None:intergenic 25.0%
! GATATCATCTTAAGAAAATG+TGG - Chr8:73479060-73479079 MsG0880046446.01.T01:CDS 25.0%
! GGAATGATTTATAGTTATGT+GGG - Chr8:73478779-73478798 MsG0880046446.01.T01:CDS 25.0%
! GTTACACGACAAAAAATAAA+GGG + Chr8:73480055-73480074 None:intergenic 25.0%
! GTTAGAATAAACTTTGCATA+TGG + Chr8:73479579-73479598 None:intergenic 25.0%
! TAATCAACAAGATCAAAAGA+TGG - Chr8:73478461-73478480 MsG0880046446.01.T01:intron 25.0%
! TGGAATGATTTATAGTTATG+TGG - Chr8:73478778-73478797 MsG0880046446.01.T01:CDS 25.0%
!! CTTTTATGAGTATGTTTAGA+AGG - Chr8:73479490-73479509 MsG0880046446.01.T01:intron 25.0%
!! TAACTTTTGTATATCTGCAT+TGG - Chr8:73479243-73479262 MsG0880046446.01.T01:intron 25.0%
!! TAATACTAATGATCTAAGGT+TGG + Chr8:73477665-73477684 None:intergenic 25.0%
!!! TTTTTTTTACAACCCTAATG+TGG - Chr8:73478564-73478583 MsG0880046446.01.T01:intron 25.0%
AAAACCTTAAATATCCTCCT+TGG + Chr8:73480027-73480046 None:intergenic 30.0%
AAAATCGTAAGAGGAAAGTA+AGG + Chr8:73478590-73478609 None:intergenic 30.0%
AAGCATCTTAACGTTCAATT+CGG + Chr8:73477869-73477888 None:intergenic 30.0%
AAGCCATCGTTATTAAAGTA+TGG - Chr8:73480195-73480214 MsG0880046446.01.T01:CDS 30.0%
AGCCATCGTTATTAAAGTAT+GGG - Chr8:73480196-73480215 MsG0880046446.01.T01:CDS 30.0%
AGTATTATGTAACGTCTCAT+CGG - Chr8:73477678-73477697 MsG0880046446.01.T01:exon 30.0%
ATTAGTAAATCACAACGGAA+AGG + Chr8:73479369-73479388 None:intergenic 30.0%
ATTTGAGAATCTGATCCATA+GGG - Chr8:73479784-73479803 MsG0880046446.01.T01:intron 30.0%
CAATGAATACAAAACCCAAT+AGG + Chr8:73478883-73478902 None:intergenic 30.0%
GTGAAAATCATAAAAAGGGT+TGG + Chr8:73478952-73478971 None:intergenic 30.0%
TAATAACCAAGTGTTACAGA+TGG + Chr8:73479815-73479834 None:intergenic 30.0%
TATATTTCAGGATCCCTATA+TGG - Chr8:73479553-73479572 MsG0880046446.01.T01:intron 30.0%
TCATTGTTTAGTGATGAGAA+TGG - Chr8:73478758-73478777 MsG0880046446.01.T01:CDS 30.0%
! ACAAGTTAAAAGAAGCACAT+TGG + Chr8:73478633-73478652 None:intergenic 30.0%
! CTTTTGCCAAAATTCTTGAA+TGG - Chr8:73478922-73478941 MsG0880046446.01.T01:CDS 30.0%
! GGTATACCATTCAAGAATTT+TGG + Chr8:73478931-73478950 None:intergenic 30.0%
! TTAGTTTATGTTTTCCAAGG+AGG - Chr8:73480010-73480029 MsG0880046446.01.T01:intron 30.0%
! TTGATTTTCTCGTGTTTTAC+TGG - Chr8:73480168-73480187 MsG0880046446.01.T01:CDS 30.0%
! TTTTCCAAGGAGGATATTTA+AGG - Chr8:73480020-73480039 MsG0880046446.01.T01:intron 30.0%
! TTTTGTCGTGTAACTATCAT+AGG - Chr8:73480061-73480080 MsG0880046446.01.T01:intron 30.0%
!! TGAATTTTCTTTTGGGAAGT+TGG - Chr8:73479104-73479123 MsG0880046446.01.T01:CDS 30.0%
!!! TAGAGATATGCCATTTTAAG+AGG + Chr8:73477991-73478010 None:intergenic 30.0%
AACTTTGCATATGGCCATAT+AGG + Chr8:73479570-73479589 None:intergenic 35.0%
ACTAAATTCCAAGTGTGTGT+GGG + Chr8:73477530-73477549 None:intergenic 35.0%
ACTTTGCATATGGCCATATA+GGG + Chr8:73479569-73479588 None:intergenic 35.0%
AGAATATACACCGTAGATTG+GGG + Chr8:73478226-73478245 None:intergenic 35.0%
AGGCTGATAAATCTAAATGG+GGG - Chr8:73479885-73479904 MsG0880046446.01.T01:intron 35.0%
AGGTCTCATCATACATTGTA+TGG + Chr8:73479919-73479938 None:intergenic 35.0%
ATACATCTTCTTCGTCTTCT+TGG - Chr8:73477563-73477582 MsG0880046446.01.T01:three_prime_UTR 35.0%
ATTAACATCTGGTATGTTCC+AGG - Chr8:73479684-73479703 MsG0880046446.01.T01:intron 35.0%
ATTCGGTTGACATAATTGGT+GGG - Chr8:73477476-73477495 MsG0880046446.01.T01:three_prime_UTR 35.0%
CAAAGTTTATTCTAACCTGC+TGG - Chr8:73479583-73479602 MsG0880046446.01.T01:intron 35.0%
CACCCATACTTTAATAACGA+TGG + Chr8:73480201-73480220 None:intergenic 35.0%
CAGGCTGATAAATCTAAATG+GGG - Chr8:73479884-73479903 MsG0880046446.01.T01:intron 35.0%
CATTTGAGAATCTGATCCAT+AGG - Chr8:73479783-73479802 MsG0880046446.01.T01:intron 35.0%
CCTAAATGAAACATGCATTC+AGG + Chr8:73479302-73479321 None:intergenic 35.0%
CCTGAATGCATGTTTCATTT+AGG - Chr8:73479299-73479318 MsG0880046446.01.T01:intron 35.0%
GAGAATATACACCGTAGATT+GGG + Chr8:73478227-73478246 None:intergenic 35.0%
GATTTGAAAGATGAATGGGA+TGG + Chr8:73478191-73478210 None:intergenic 35.0%
GCAGGCTGATAAATCTAAAT+GGG - Chr8:73479883-73479902 MsG0880046446.01.T01:intron 35.0%
GCTACAAGATTGCATTCAAT+AGG + Chr8:73479939-73479958 None:intergenic 35.0%
GGATAAACAAGACTAATCAC+AGG + Chr8:73478685-73478704 None:intergenic 35.0%
GTATTTCCATCTGTAACACT+TGG - Chr8:73479806-73479825 MsG0880046446.01.T01:intron 35.0%
TAAGCAGCACCAGTAAAATA+AGG + Chr8:73479618-73479637 None:intergenic 35.0%
TCTTGTTAAAACCTGTGTTG+GGG + Chr8:73477608-73477627 None:intergenic 35.0%
TGAGAATATACACCGTAGAT+TGG + Chr8:73478228-73478247 None:intergenic 35.0%
TGCAGGCTGATAAATCTAAA+TGG - Chr8:73479882-73479901 MsG0880046446.01.T01:intron 35.0%
TGGAACATACCAGATGTTAA+TGG + Chr8:73479685-73479704 None:intergenic 35.0%
TTACAGATGGAAATACCCTA+TGG + Chr8:73479802-73479821 None:intergenic 35.0%
TTGCATTCGGTTGACATAAT+TGG - Chr8:73477472-73477491 MsG0880046446.01.T01:three_prime_UTR 35.0%
! AATAGAGAGTGTGCTTACAA+AGG + Chr8:73478706-73478725 None:intergenic 35.0%
! CAAAGAGTATGGAGTTTAAG+TGG + Chr8:73477838-73477857 None:intergenic 35.0%
! GTCTTGTTAAAACCTGTGTT+GGG + Chr8:73477609-73477628 None:intergenic 35.0%
! TGATCTAAGGTTGGTTGAAT+TGG + Chr8:73477656-73477675 None:intergenic 35.0%
! TGTCTTGTTAAAACCTGTGT+TGG + Chr8:73477610-73477629 None:intergenic 35.0%
! TTGTTGGTTGTATCATGTTG+TGG - Chr8:73479027-73479046 MsG0880046446.01.T01:intron 35.0%
!! AGATTTTGATGTAAGTGGCT+GGG - Chr8:73478532-73478551 MsG0880046446.01.T01:intron 35.0%
!! CTCAGAGATTTTGATGTAAG+TGG - Chr8:73478527-73478546 MsG0880046446.01.T01:intron 35.0%
!! CTGGGAAAGCATTAAACTTT+CGG - Chr8:73479514-73479533 MsG0880046446.01.T01:intron 35.0%
!! GAAAAAAAGTGGACTGTTGT+TGG + Chr8:73478305-73478324 None:intergenic 35.0%
!! GCTTTATCAATGATTGGCTT+TGG + Chr8:73477717-73477736 None:intergenic 35.0%
!! GTTGTTGTTGTTTCTATTGC+AGG - Chr8:73478659-73478678 MsG0880046446.01.T01:intron 35.0%
!! TTGGTTGGTCCACAAATTTT+GGG - Chr8:73478094-73478113 MsG0880046446.01.T01:intron 35.0%
!! TTTGGTTGGTCCACAAATTT+TGG - Chr8:73478093-73478112 MsG0880046446.01.T01:intron 35.0%
!!! TTGGTCCTTCCTTATTTTAC+TGG - Chr8:73479606-73479625 MsG0880046446.01.T01:intron 35.0%
AAGAACCATGAGAAAACGAC+CGG + Chr8:73478507-73478526 None:intergenic 40.0%
ACGACACAACAGAGATGTTT+GGG + Chr8:73478397-73478416 None:intergenic 40.0%
ACTAGAATAACCCTGCAGAT+TGG + Chr8:73479166-73479185 None:intergenic 40.0%
ACTGTACTCCAGATATGCTT+CGG - Chr8:73478809-73478828 MsG0880046446.01.T01:intron 40.0%
AGACAGATAATGAGAGAGTG+TGG + Chr8:73478372-73478391 None:intergenic 40.0%
AGATACCGAAATGAGTCGTA+GGG + Chr8:73477772-73477791 None:intergenic 40.0%
AGATGATGTTGGTACAACAG+TGG - Chr8:73480138-73480157 MsG0880046446.01.T01:intron 40.0%
AGGAAAGTAAGGCCACATTA+GGG + Chr8:73478579-73478598 None:intergenic 40.0%
AGGATTCCATTGTATCCTGA+AGG - Chr8:73477419-73477438 MsG0880046446.01.T01:three_prime_UTR 40.0%
AGTGTTCGATCGAAGAACAT+AGG - Chr8:73478422-73478441 MsG0880046446.01.T01:intron 40.0%
ATCAACAGTGGCTAACCTAT+TGG - Chr8:73478865-73478884 MsG0880046446.01.T01:intron 40.0%
ATCCTCAGACCATTAACATC+TGG - Chr8:73479673-73479692 MsG0880046446.01.T01:intron 40.0%
ATGAGTATGTTTAGAAGGGC+TGG - Chr8:73479495-73479514 MsG0880046446.01.T01:intron 40.0%
ATGCTTCTGTTCCATTCTCT+TGG + Chr8:73479766-73479785 None:intergenic 40.0%
CAACAAGATCAAAAGATGGG+TGG - Chr8:73478465-73478484 MsG0880046446.01.T01:intron 40.0%
CACTAAATTCCAAGTGTGTG+TGG + Chr8:73477531-73477550 None:intergenic 40.0%
CAGCACCAGTAAAATAAGGA+AGG + Chr8:73479614-73479633 None:intergenic 40.0%
CATTCGGTTGACATAATTGG+TGG - Chr8:73477475-73477494 MsG0880046446.01.T01:three_prime_UTR 40.0%
CTTGTTAAAACCTGTGTTGG+GGG + Chr8:73477607-73477626 None:intergenic 40.0%
GAATATACACCGTAGATTGG+GGG + Chr8:73478225-73478244 None:intergenic 40.0%
GATGTAGAGACCATTACAGA+AGG + Chr8:73477741-73477760 None:intergenic 40.0%
GATGTTAATGGTCTGAGGAT+TGG + Chr8:73479673-73479692 None:intergenic 40.0%
GATTCCATTGTATCCTGAAG+GGG - Chr8:73477421-73477440 MsG0880046446.01.T01:three_prime_UTR 40.0%
GCAGCAGTTATAATGTCATC+TGG + Chr8:73479731-73479750 None:intergenic 40.0%
GCATTATGTAAGACCCTTCT+TGG - Chr8:73479647-73479666 MsG0880046446.01.T01:intron 40.0%
GCTGATAAATCTAAATGGGG+GGG - Chr8:73479887-73479906 MsG0880046446.01.T01:intron 40.0%
GGATTCCATTGTATCCTGAA+GGG - Chr8:73477420-73477439 MsG0880046446.01.T01:three_prime_UTR 40.0%
GGCTGATAAATCTAAATGGG+GGG - Chr8:73479886-73479905 MsG0880046446.01.T01:intron 40.0%
GTTTATTCTAACCTGCTGGT+TGG - Chr8:73479587-73479606 MsG0880046446.01.T01:intron 40.0%
TACCAGATGTTAATGGTCTG+AGG + Chr8:73479678-73479697 None:intergenic 40.0%
TAGATACCGAAATGAGTCGT+AGG + Chr8:73477773-73477792 None:intergenic 40.0%
TCAACAGTGGCTAACCTATT+GGG - Chr8:73478866-73478885 MsG0880046446.01.T01:intron 40.0%
TCACTACAAGCACATCCAAA+GGG + Chr8:73479269-73479288 None:intergenic 40.0%
TCTGGTATGTTCCAGGAAAA+AGG - Chr8:73479691-73479710 MsG0880046446.01.T01:intron 40.0%
TGAGTATGTTTAGAAGGGCT+GGG - Chr8:73479496-73479515 MsG0880046446.01.T01:intron 40.0%
TTATGTCAACCGAATGCAAC+CGG + Chr8:73477471-73477490 None:intergenic 40.0%
TTTATCAGCCTGCAGAATGA+TGG + Chr8:73479876-73479895 None:intergenic 40.0%
! GAGAAGTACATCCAAGAGAA+TGG - Chr8:73479752-73479771 MsG0880046446.01.T01:intron 40.0%
! TGATAAAGCGCCTTCTGTAA+TGG - Chr8:73477728-73477747 MsG0880046446.01.T01:intron 40.0%
! TGTGGGACACACTAACTTTT+AGG + Chr8:73477513-73477532 None:intergenic 40.0%
!! CAGGTTTTAACAAGACACAG+AGG - Chr8:73477613-73477632 MsG0880046446.01.T01:three_prime_UTR 40.0%
!! GAAGGCGCTTTATCAATGAT+TGG + Chr8:73477723-73477742 None:intergenic 40.0%
!! GAGATTTTGATGTAAGTGGC+TGG - Chr8:73478531-73478550 MsG0880046446.01.T01:intron 40.0%
!! TTGGTCCACAAATTTTGGGT+CGG - Chr8:73478098-73478117 MsG0880046446.01.T01:intron 40.0%
AATCTCCTTCCCCCAATCTA+CGG - Chr8:73478213-73478232 MsG0880046446.01.T01:intron 45.0%
ACTCCAGATATGCTTCGGTT+AGG - Chr8:73478814-73478833 MsG0880046446.01.T01:intron 45.0%
AGATCAAAAGATGGGTGGCT+TGG - Chr8:73478470-73478489 MsG0880046446.01.T01:intron 45.0%
CACGACACAACAGAGATGTT+TGG + Chr8:73478398-73478417 None:intergenic 45.0%
CGGTAAGAGAGCAAAGAGTA+TGG + Chr8:73477849-73477868 None:intergenic 45.0%
CTCCAGATATGCTTCGGTTA+GGG - Chr8:73478815-73478834 MsG0880046446.01.T01:intron 45.0%
CTTCTGCCTCTTGTGGATAA+GGG - Chr8:73479958-73479977 MsG0880046446.01.T01:intron 45.0%
GAATCCCCTTCAGGATACAA+TGG + Chr8:73477428-73477447 None:intergenic 45.0%
GAGGAAAGTAAGGCCACATT+AGG + Chr8:73478580-73478599 None:intergenic 45.0%
GATACCGAAATGAGTCGTAG+GGG + Chr8:73477771-73477790 None:intergenic 45.0%
GTCACTACAAGCACATCCAA+AGG + Chr8:73479270-73479289 None:intergenic 45.0%
GTGGTGTGAGTTGTACTTGT+TGG + Chr8:73478353-73478372 None:intergenic 45.0%
TAACTGTGCCATCATTCTGC+AGG - Chr8:73479865-73479884 MsG0880046446.01.T01:intron 45.0%
TAGCCACTGTTGATCATCCA+CGG + Chr8:73478859-73478878 None:intergenic 45.0%
TATCATCTGCGTGTGTAAGC+TGG - Chr8:73479127-73479146 MsG0880046446.01.T01:CDS 45.0%
TCGGTATAACCCTTTGCATC+CGG - Chr8:73477449-73477468 MsG0880046446.01.T01:three_prime_UTR 45.0%
TGAAGTCGGCAGCAGTAATT+TGG - Chr8:73478075-73478094 MsG0880046446.01.T01:intron 45.0%
TGGCTTGACTCTTGAGTGAA+AGG + Chr8:73478333-73478352 None:intergenic 45.0%
TTCTGCCTCTTGTGGATAAG+GGG - Chr8:73479959-73479978 MsG0880046446.01.T01:intron 45.0%
TTTGATGTAAGTGGCTGGGT+AGG - Chr8:73478536-73478555 MsG0880046446.01.T01:intron 45.0%
! AGGTAGTCAAGCTTTTGGAC+AGG + Chr8:73478147-73478166 None:intergenic 45.0%
! AGTGAAGACGTCCTTTTTCC+TGG + Chr8:73479705-73479724 None:intergenic 45.0%
! GTATATCTGCATTGGCCCTT+TGG - Chr8:73479251-73479270 MsG0880046446.01.T01:intron 45.0%
! GTCTCAGGTAGTCAAGCTTT+TGG + Chr8:73478152-73478171 None:intergenic 45.0%
!! AGATGAATGGGATGGATTGC+TGG + Chr8:73478183-73478202 None:intergenic 45.0%
!! AGTAAAAAATATAAAAAAAA+AGG - Chr8:73478046-73478065 MsG0880046446.01.T01:intron 5.0%
!!! TTTTTTTTATATTTTTTACT+TGG + Chr8:73478046-73478065 None:intergenic 5.0%
AATTGAGAGCAAGTCTCCCG+TGG - Chr8:73478839-73478858 MsG0880046446.01.T01:intron 50.0%
ACGAACCCCTTATCCACAAG+AGG + Chr8:73479967-73479986 None:intergenic 50.0%
AGCCACTGTTGATCATCCAC+GGG + Chr8:73478858-73478877 None:intergenic 50.0%
ATAAGGAAGGACCAACCAGC+AGG + Chr8:73479601-73479620 None:intergenic 50.0%
ATACACCGTAGATTGGGGGA+AGG + Chr8:73478221-73478240 None:intergenic 50.0%
CACACCCCTACGACTCATTT+CGG - Chr8:73477764-73477783 MsG0880046446.01.T01:intron 50.0%
CCTTTGCATCCGGTTGCATT+CGG - Chr8:73477459-73477478 MsG0880046446.01.T01:three_prime_UTR 50.0%
CGAATGCAACCGGATGCAAA+GGG + Chr8:73477461-73477480 None:intergenic 50.0%
CTTGTAGCTTCTGCCTCTTG+TGG - Chr8:73479951-73479970 MsG0880046446.01.T01:intron 50.0%
GAATAACCCTGCAGATTGGC+AGG + Chr8:73479162-73479181 None:intergenic 50.0%
GCTTCTGCCTCTTGTGGATA+AGG - Chr8:73479957-73479976 MsG0880046446.01.T01:intron 50.0%
GGTCACCGACCCAAAATTTG+TGG + Chr8:73478106-73478125 None:intergenic 50.0%
GGTTGTGTGCAGTGAGAGTA+GGG + Chr8:73478260-73478279 None:intergenic 50.0%
GTATCCTGAAGGGGATTCGT+CGG - Chr8:73477430-73477449 MsG0880046446.01.T01:three_prime_UTR 50.0%
GTCGGCAGCAGTAATTTGGT+TGG - Chr8:73478079-73478098 MsG0880046446.01.T01:intron 50.0%
TAGTGTGTCCCACACACACT+TGG - Chr8:73477519-73477538 MsG0880046446.01.T01:three_prime_UTR 50.0%
TATACCGACGAATCCCCTTC+AGG + Chr8:73477437-73477456 None:intergenic 50.0%
TGCCCTAACCGAAGCATATC+TGG + Chr8:73478820-73478839 None:intergenic 50.0%
TGGTTACCTGCCAATCTGCA+GGG - Chr8:73479153-73479172 MsG0880046446.01.T01:intron 50.0%
TGGTTGTGTGCAGTGAGAGT+AGG + Chr8:73478261-73478280 None:intergenic 50.0%
TTGGTTACCTGCCAATCTGC+AGG - Chr8:73479152-73479171 MsG0880046446.01.T01:intron 50.0%
TTTCAGCAAACCCCCAACAC+AGG - Chr8:73477594-73477613 MsG0880046446.01.T01:three_prime_UTR 50.0%
! GTCAAGCTTTTGGACAGGTG+AGG + Chr8:73478142-73478161 None:intergenic 50.0%
! TCAAAAGATGGGTGGCTTGG+AGG - Chr8:73478473-73478492 MsG0880046446.01.T01:intron 50.0%
! TGGACAGGTGAGGTTCTAGT+GGG + Chr8:73478132-73478151 None:intergenic 50.0%
! TTGGACAGGTGAGGTTCTAG+TGG + Chr8:73478133-73478152 None:intergenic 50.0%
!! AGGTGAGGTTCTAGTGGGTT+CGG + Chr8:73478127-73478146 None:intergenic 50.0%
!! GTCTGAGGATTGGCCAAGAA+GGG + Chr8:73479663-73479682 None:intergenic 50.0%
ACAGAGGTCGAGACACACAG+AGG - Chr8:73477629-73477648 MsG0880046446.01.T01:three_prime_UTR 55.0%
CCGAATGCAACCGGATGCAA+AGG + Chr8:73477462-73477481 None:intergenic 55.0%
CTCCCGTGGATGATCAACAG+TGG - Chr8:73478853-73478872 MsG0880046446.01.T01:intron 55.0%
TTGCTGGACACTGTGGTCTC+AGG + Chr8:73478167-73478186 None:intergenic 55.0%
! CTGCGTGTGTAAGCTGGCTT+TGG - Chr8:73479133-73479152 MsG0880046446.01.T01:intron 55.0%
!! GGATGGATTGCTGGACACTG+TGG + Chr8:73478174-73478193 None:intergenic 55.0%
!! GGTCTGAGGATTGGCCAAGA+AGG + Chr8:73479664-73479683 None:intergenic 55.0%
!!! TGGTGCCGGTCGTTTTCTCA+TGG - Chr8:73478499-73478518 MsG0880046446.01.T01:intron 55.0%
! GATGGGTGGCTTGGAGGATC+TGG - Chr8:73478479-73478498 MsG0880046446.01.T01:intron 60.0%
! TGGCTTGGAGGATCTGGTGC+CGG - Chr8:73478485-73478504 MsG0880046446.01.T01:intron 60.0%
Chromosome Type Strat End Strand Name
Chr8 gene 73477402 73480226 73477402 ID=MsG0880046446.01;Name=MsG0880046446.01
Chr8 mRNA 73477402 73480226 73477402 ID=MsG0880046446.01.T01;Parent=MsG0880046446.01;Name=MsG0880046446.01.T01;_AED=0.49;_eAED=0.57;_QI=0|0.4|0.5|1|0|0|6|283|162
Chr8 exon 73477402 73477741 73477402 ID=MsG0880046446.01.T01:exon:11768;Parent=MsG0880046446.01.T01
Chr8 exon 73477823 73477922 73477823 ID=MsG0880046446.01.T01:exon:11767;Parent=MsG0880046446.01.T01
Chr8 exon 73478685 73478807 73478685 ID=MsG0880046446.01.T01:exon:11766;Parent=MsG0880046446.01.T01
Chr8 exon 73478921 73478947 73478921 ID=MsG0880046446.01.T01:exon:11765;Parent=MsG0880046446.01.T01
Chr8 exon 73479046 73479148 73479046 ID=MsG0880046446.01.T01:exon:11764;Parent=MsG0880046446.01.T01
Chr8 exon 73480148 73480226 73480148 ID=MsG0880046446.01.T01:exon:11763;Parent=MsG0880046446.01.T01
Chr8 CDS 73480148 73480226 73480148 ID=MsG0880046446.01.T01:cds;Parent=MsG0880046446.01.T01
Chr8 CDS 73479046 73479148 73479046 ID=MsG0880046446.01.T01:cds;Parent=MsG0880046446.01.T01
Chr8 CDS 73478921 73478947 73478921 ID=MsG0880046446.01.T01:cds;Parent=MsG0880046446.01.T01
Chr8 CDS 73478685 73478807 73478685 ID=MsG0880046446.01.T01:cds;Parent=MsG0880046446.01.T01
Chr8 CDS 73477823 73477922 73477823 ID=MsG0880046446.01.T01:cds;Parent=MsG0880046446.01.T01
Chr8 CDS 73477685 73477741 73477685 ID=MsG0880046446.01.T01:cds;Parent=MsG0880046446.01.T01
Chr8 three_prime_UTR 73477402 73477684 73477402 ID=MsG0880046446.01.T01:three_prime_utr;Parent=MsG0880046446.01.T01
Gene Sequence

>MsG0880046446.01.T01

ATGTGCAAGTCGCGTCAAGGATTCCATTGTATCCTGAAGGGGATTCGTCGGTATAACCCTTTGCATCCGGTTGCATTCGATGGGTGGCTTGGAGGATCTGGTGCCGGTCGTTTTCTCATGGTTCTTCTCAGAGATTTTGATGTAAGTGGCTGGGTAGGTCTTTTTTTTTTTACAACCCTAATGCCTGTGATTAGTCTTGTTTATCCTTTATATGCTTCGGTTAGGGCAATTGAGAGCAAGTCTCCCGTGGATGATCAACAGTGGCTAACCTATTGGGTTTTGTATTCATTGATCACTCTTTTTGAACTTACTTTTGCCAAAATTCTTGAATGGAAAAAGGACGTCTTCACTAAACCAGATGACATTATAACTGCTGCAGAGAAGTACATCCAAGAGAATGGAACAGAAGCATTTGAGAATCTGATCCATAGGGCTGATAAATCTAAATGGGGGGGTAGTCACCATACAATGTATGATGAGACCTATTGA
Protein sequence

>MsG0880046446.01.T01

MCKSRQGFHCILKGIRRYNPLHPVAFDGWLGGSGAGRFLMVLLRDFDVSGWVGLFFFTTLMPVISLVYPLYASVRAIESKSPVDDQQWLTYWVLYSLITLFELTFAKILEWKKDVFTKPDDIITAAEKYIQENGTEAFENLIHRADKSKWGGSHHTMYDETY*