Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0180004781.01.T01 | RHN81020.1 | 80.625 | 480 | 90 | 1 | 1 | 477 | 60 | 539 | 0 | 788 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0180004781.01.T01 | Q9FZ24 | 41.031 | 485 | 238 | 6 | 1 | 437 | 1 | 485 | 5.19E-122 | 369 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0180004781.01.T01 | A0A396JRT9 | 80.625 | 480 | 90 | 1 | 1 | 477 | 60 | 539 | 0.0 | 788 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|---|---|
| MsG0180004781.01 | MsG0380017889.01 | PPI |
| MsG0180004781.01 | MsG0880045294.01 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0180004781.01.T01 | MTR_1g086820 | 80.625 | 480 | 90 | 1 | 1 | 477 | 1 | 480 | 0.0 | 788 |
| MsG0180004781.01.T01 | MTR_8g069570 | 38.117 | 446 | 260 | 7 | 47 | 477 | 39 | 483 | 5.78e-92 | 288 |
| MsG0180004781.01.T01 | MTR_2g013450 | 28.728 | 456 | 306 | 7 | 28 | 468 | 25 | 476 | 3.89e-59 | 202 |
| MsG0180004781.01.T01 | MTR_8g007375 | 32.086 | 374 | 251 | 3 | 99 | 469 | 16 | 389 | 1.41e-54 | 188 |
| MsG0180004781.01.T01 | MTR_1g072300 | 29.930 | 431 | 287 | 8 | 20 | 439 | 25 | 451 | 2.12e-52 | 185 |
| MsG0180004781.01.T01 | MTR_2g047855 | 30.685 | 365 | 240 | 5 | 13 | 371 | 19 | 376 | 3.97e-50 | 178 |
| MsG0180004781.01.T01 | MTR_8g465890 | 29.412 | 425 | 279 | 7 | 14 | 427 | 16 | 430 | 2.04e-49 | 176 |
| MsG0180004781.01.T01 | MTR_3g099753 | 27.670 | 412 | 290 | 4 | 20 | 423 | 26 | 437 | 2.12e-45 | 166 |
| MsG0180004781.01.T01 | MTR_3g099753 | 27.670 | 412 | 290 | 4 | 20 | 423 | 50 | 461 | 3.43e-45 | 166 |
| MsG0180004781.01.T01 | MTR_8g059115 | 27.907 | 344 | 246 | 2 | 98 | 439 | 14 | 357 | 8.10e-43 | 156 |
| MsG0180004781.01.T01 | MTR_2g090290 | 29.573 | 328 | 215 | 5 | 51 | 364 | 52 | 377 | 5.83e-38 | 145 |
| MsG0180004781.01.T01 | MTR_1g022400 | 27.795 | 331 | 227 | 6 | 46 | 364 | 69 | 399 | 8.18e-35 | 134 |
| MsG0180004781.01.T01 | MTR_8g031520 | 33.824 | 204 | 124 | 3 | 29 | 221 | 97 | 300 | 6.38e-26 | 107 |
| MsG0180004781.01.T01 | MTR_7g089770 | 22.963 | 405 | 291 | 12 | 38 | 433 | 163 | 555 | 8.74e-22 | 99.0 |
| MsG0180004781.01.T01 | MTR_1g050750 | 24.919 | 309 | 223 | 7 | 38 | 339 | 97 | 403 | 7.80e-19 | 89.7 |
| MsG0180004781.01.T01 | MTR_2g096880 | 23.913 | 322 | 227 | 8 | 17 | 330 | 35 | 346 | 3.66e-16 | 81.3 |
| MsG0180004781.01.T01 | MTR_1g114300 | 22.246 | 472 | 297 | 17 | 15 | 433 | 58 | 512 | 9.69e-11 | 64.3 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0180004781.01.T01 | AT1G02370 | 41.031 | 485 | 238 | 6 | 1 | 437 | 1 | 485 | 5.29e-123 | 369 |
| MsG0180004781.01.T01 | AT4G01990 | 42.825 | 446 | 235 | 8 | 11 | 437 | 6 | 450 | 9.70e-116 | 350 |
| MsG0180004781.01.T01 | AT1G60770 | 37.310 | 461 | 271 | 9 | 33 | 477 | 25 | 483 | 4.36e-88 | 278 |
| MsG0180004781.01.T01 | AT1G02150 | 32.930 | 413 | 270 | 3 | 33 | 438 | 69 | 481 | 5.87e-70 | 232 |
| MsG0180004781.01.T01 | AT4G21705 | 30.788 | 419 | 283 | 5 | 28 | 439 | 22 | 440 | 2.72e-62 | 211 |
| MsG0180004781.01.T01 | AT5G27460 | 31.421 | 401 | 263 | 6 | 39 | 427 | 44 | 444 | 2.81e-55 | 192 |
| MsG0180004781.01.T01 | AT2G20710 | 28.814 | 413 | 284 | 5 | 32 | 438 | 39 | 447 | 7.50e-51 | 180 |
| MsG0180004781.01.T01 | AT4G02820 | 28.270 | 474 | 318 | 9 | 8 | 468 | 41 | 505 | 3.51e-50 | 179 |
| MsG0180004781.01.T01 | AT2G20710 | 30.117 | 342 | 233 | 4 | 99 | 438 | 15 | 352 | 3.56e-45 | 162 |
| MsG0180004781.01.T01 | AT5G09450 | 31.173 | 324 | 208 | 7 | 25 | 336 | 49 | 369 | 1.55e-39 | 147 |
| MsG0180004781.01.T01 | AT1G28020 | 27.576 | 330 | 231 | 5 | 35 | 356 | 40 | 369 | 3.24e-32 | 129 |
| MsG0180004781.01.T01 | AT1G80270 | 23.111 | 450 | 310 | 14 | 39 | 468 | 136 | 569 | 1.26e-22 | 101 |
| MsG0180004781.01.T01 | AT1G80270 | 23.111 | 450 | 310 | 14 | 39 | 468 | 136 | 569 | 1.26e-22 | 101 |
| MsG0180004781.01.T01 | AT1G80270 | 23.111 | 450 | 310 | 14 | 39 | 468 | 136 | 569 | 1.26e-22 | 101 |
| MsG0180004781.01.T01 | AT1G80270 | 23.111 | 450 | 310 | 14 | 39 | 468 | 136 | 569 | 1.26e-22 | 101 |
| MsG0180004781.01.T01 | AT1G80270 | 23.111 | 450 | 310 | 14 | 39 | 468 | 136 | 569 | 1.26e-22 | 101 |
| MsG0180004781.01.T01 | AT3G15590 | 29.921 | 254 | 165 | 7 | 45 | 290 | 155 | 403 | 1.61e-22 | 101 |
| MsG0180004781.01.T01 | AT3G15590 | 29.921 | 254 | 165 | 7 | 45 | 290 | 155 | 403 | 1.61e-22 | 101 |
| MsG0180004781.01.T01 | AT1G15480 | 25.828 | 302 | 211 | 8 | 28 | 321 | 124 | 420 | 1.34e-21 | 98.6 |
| MsG0180004781.01.T01 | AT3G11380 | 26.403 | 303 | 184 | 6 | 70 | 364 | 82 | 353 | 5.33e-18 | 87.0 |
| MsG0180004781.01.T01 | AT3G11380 | 31.818 | 176 | 113 | 5 | 51 | 219 | 366 | 541 | 4.73e-11 | 65.5 |
| MsG0180004781.01.T01 | AT1G07590 | 24.308 | 325 | 234 | 6 | 44 | 360 | 78 | 398 | 1.38e-17 | 85.9 |
| MsG0180004781.01.T01 | AT1G28000 | 23.592 | 284 | 207 | 6 | 13 | 286 | 13 | 296 | 1.71e-11 | 66.2 |
Find 96 sgRNAs with CRISPR-Local
Find 120 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AATTACGGCCGTTTGATTTC+CGG | 0.229164 | 1:-82710386 | MsG0180004781.01.T01:CDS |
| GGGCATAATAACATTGTTTA+AGG | 0.231511 | 1:-82709204 | MsG0180004781.01.T01:CDS |
| AGGACCTTTCTTTAGGATTC+AGG | 0.243843 | 1:-82709057 | MsG0180004781.01.T01:CDS |
| CCGTATCATTAAGCCTTCTA+AGG | 0.261570 | 1:+82709228 | None:intergenic |
| AAGCTGAGTTGATGCTTAAA+AGG | 0.266289 | 1:-82709409 | MsG0180004781.01.T01:CDS |
| ATTGTTCATGCTGTATTTAT+TGG | 0.275275 | 1:-82709033 | MsG0180004781.01.T01:CDS |
| TTTGATAAGATGGATGAATT+AGG | 0.276635 | 1:-82709710 | MsG0180004781.01.T01:CDS |
| CATCACTTGTTGAGCCTCTA+TGG | 0.288847 | 1:-82709347 | MsG0180004781.01.T01:CDS |
| TTTGTCTTTCACCAATTTGA+TGG | 0.304398 | 1:-82709675 | MsG0180004781.01.T01:CDS |
| TTATGCTTTCTACCCTTAGA+AGG | 0.334013 | 1:-82709241 | MsG0180004781.01.T01:CDS |
| CATATACAAAACCATCAAAT+TGG | 0.348712 | 1:+82709664 | None:intergenic |
| GGTGTAGAGGACCTTTCTTT+AGG | 0.358064 | 1:-82709064 | MsG0180004781.01.T01:CDS |
| CTGAATTTACATACACTGTT+TGG | 0.374347 | 1:-82709574 | MsG0180004781.01.T01:CDS |
| GAAGGCAAAGCCTTAGAAAA+AGG | 0.386252 | 1:-82710221 | MsG0180004781.01.T01:CDS |
| TTAAACAGGTTTATAGAGTC+TGG | 0.387267 | 1:-82709310 | MsG0180004781.01.T01:CDS |
| TACAACAGCAGCTGAGCTTC+CGG | 0.389647 | 1:-82710330 | MsG0180004781.01.T01:CDS |
| ATTCATGACTTTCGAAAGAA+TGG | 0.402966 | 1:-82710182 | MsG0180004781.01.T01:CDS |
| TGGTACTGGTAATGTTAAAC+AGG | 0.422414 | 1:-82709324 | MsG0180004781.01.T01:CDS |
| CAGCTTTGAATGACATTGGT+GGG | 0.429431 | 1:-82709538 | MsG0180004781.01.T01:CDS |
| AGTAATGCAAGTTTCAATAC+AGG | 0.442716 | 1:+82708827 | None:intergenic |
| GGCTCATAGCACCATTCAAT+TGG | 0.443758 | 1:+82709003 | None:intergenic |
| TCAGTTGGTTAATGTTATGA+AGG | 0.445036 | 1:-82709615 | MsG0180004781.01.T01:CDS |
| TGGGGTTGAAAGGGTTTATG+AGG | 0.447556 | 1:-82709519 | MsG0180004781.01.T01:CDS |
| AAGACGAAGACAAAATTGAT+TGG | 0.451397 | 1:-82709484 | MsG0180004781.01.T01:CDS |
| ATGAGTTAAGCAAGATTCTC+AGG | 0.451952 | 1:-82708869 | MsG0180004781.01.T01:CDS |
| CATAATAAAATAGCTATGAT+TGG | 0.458064 | 1:+82709259 | None:intergenic |
| ATGACATTGGTGGGGTTGAA+AGG | 0.462059 | 1:-82709529 | MsG0180004781.01.T01:CDS |
| GCTAGTCTGTGGTAAAGGTT+TGG | 0.462155 | 1:+82710299 | None:intergenic |
| TTGAGCCTCTATGGTGGTAC+TGG | 0.464901 | 1:-82709338 | MsG0180004781.01.T01:CDS |
| TGGTATTCATCAAGTATTGA+AGG | 0.467131 | 1:-82708787 | MsG0180004781.01.T01:CDS |
| TGACATTGGTGGGGTTGAAA+GGG | 0.469956 | 1:-82709528 | MsG0180004781.01.T01:CDS |
| AATAACATTGTTTAAGGAGT+GGG | 0.471012 | 1:-82709198 | MsG0180004781.01.T01:CDS |
| TGGTAACTTTCGCGTTGCAC+TGG | 0.472277 | 1:+82709368 | None:intergenic |
| TTCAATCACTCCTTTCACTT+TGG | 0.474139 | 1:+82709844 | None:intergenic |
| TTACCACAGACTAGCGGTGC+TGG | 0.481394 | 1:-82710291 | MsG0180004781.01.T01:CDS |
| GTTTGATTTCCGGCGGAGGA+AGG | 0.482051 | 1:-82710376 | MsG0180004781.01.T01:CDS |
| AGAGACTCTGAAATGAATTA+CGG | 0.484891 | 1:-82710401 | None:intergenic |
| GCACCGCTAGTCTGTGGTAA+AGG | 0.493852 | 1:+82710294 | None:intergenic |
| AGCTTGTTAATTATGATACA+AGG | 0.497708 | 1:-82709169 | MsG0180004781.01.T01:CDS |
| GGCCGTTTGATTTCCGGCGG+AGG | 0.498441 | 1:-82710380 | MsG0180004781.01.T01:CDS |
| TCGGAGAAGCCTTCCTCCGC+CGG | 0.500205 | 1:+82710367 | None:intergenic |
| TTGGAGAAATGCCAATTGAA+TGG | 0.505083 | 1:-82709014 | MsG0180004781.01.T01:CDS |
| GCTGCTATCTATATAAAAGC+TGG | 0.505469 | 1:-82709443 | MsG0180004781.01.T01:CDS |
| TTCCTCCGCCGGAAATCAAA+CGG | 0.507328 | 1:+82710378 | None:intergenic |
| ACTGCATCTGAATCATCTCT+TGG | 0.510797 | 1:-82708807 | MsG0180004781.01.T01:CDS |
| CGTCTGCGACACAGTTTCTC+CGG | 0.521322 | 1:+82710262 | None:intergenic |
| CCTTAGAAGGCTTAATGATA+CGG | 0.522341 | 1:-82709228 | MsG0180004781.01.T01:CDS |
| AATTATGATACAAGGTTGGC+TGG | 0.523312 | 1:-82709161 | MsG0180004781.01.T01:CDS |
| TAAAGGTTTGGCTTCTTCGC+CGG | 0.534104 | 1:+82710311 | None:intergenic |
| AATTCCTGAATCCTAAAGAA+AGG | 0.537404 | 1:+82709053 | None:intergenic |
| TGTTAATTATGATACAAGGT+TGG | 0.541417 | 1:-82709165 | MsG0180004781.01.T01:CDS |
| GTTACAAGTTCTCGTGTGCA+TGG | 0.545024 | 1:+82708748 | None:intergenic |
| CAGTTGGTTAATGTTATGAA+GGG | 0.560663 | 1:-82709614 | MsG0180004781.01.T01:CDS |
| CTAGCGGTGCTGGAAAAGAC+CGG | 0.562565 | 1:-82710281 | MsG0180004781.01.T01:CDS |
| AGAAAAGCACTCACAACTTG+TGG | 0.563214 | 1:+82708930 | None:intergenic |
| GCAGCTTTGAATGACATTGG+TGG | 0.569276 | 1:-82709539 | MsG0180004781.01.T01:CDS |
| AGCTTTGAATGACATTGGTG+GGG | 0.572390 | 1:-82709537 | MsG0180004781.01.T01:CDS |
| CTTCTAAACTGTTACTGCAA+GGG | 0.573008 | 1:-82709761 | MsG0180004781.01.T01:CDS |
| CAGATTCCATCTCGCATTCG+AGG | 0.574452 | 1:-82710159 | MsG0180004781.01.T01:intron |
| GCACTCACAACTTGTGGTGA+AGG | 0.577944 | 1:+82708936 | None:intergenic |
| TAATAACATTGTTTAAGGAG+TGG | 0.580243 | 1:-82709199 | MsG0180004781.01.T01:CDS |
| TATCTTGTGTCCAAAGTGAA+AGG | 0.580372 | 1:-82709854 | MsG0180004781.01.T01:CDS |
| TACGCTCAAGAAGGTCTCAC+CGG | 0.582181 | 1:-82709285 | MsG0180004781.01.T01:CDS |
| GAAGCCGCACTTTCAGAAGT+CGG | 0.583270 | 1:-82708975 | MsG0180004781.01.T01:CDS |
| TCTTCTAAACTGTTACTGCA+AGG | 0.585829 | 1:-82709762 | MsG0180004781.01.T01:CDS |
| AATGGTTGCAGATAATGGAA+TGG | 0.590967 | 1:-82709919 | MsG0180004781.01.T01:intron |
| AAGGCTCTTAAGCGGTGTAG+AGG | 0.591462 | 1:-82709077 | MsG0180004781.01.T01:CDS |
| TTTCCAGCACCGCTAGTCTG+TGG | 0.594931 | 1:+82710288 | None:intergenic |
| CTGAAAGTGCGGCTTCTAAG+TGG | 0.596496 | 1:+82708982 | None:intergenic |
| CATAGAGGCTCAACAAGTGA+TGG | 0.603610 | 1:+82709348 | None:intergenic |
| CGTATCATTAAGCCTTCTAA+GGG | 0.604610 | 1:+82709229 | None:intergenic |
| CATTACCAGTACCACCATAG+AGG | 0.605854 | 1:+82709333 | None:intergenic |
| TTGTAGCCGTGCAGAGTCGT+CGG | 0.608294 | 1:+82710348 | None:intergenic |
| TTCATAACATTAACCAACTG+AGG | 0.615039 | 1:+82709617 | None:intergenic |
| GTGATACCTCGAATGCGAGA+TGG | 0.615080 | 1:+82710153 | None:intergenic |
| AAGGTTGGCTGGTGTTGCAG+TGG | 0.615366 | 1:-82709150 | MsG0180004781.01.T01:CDS |
| TTGAATCAGTATATAACCGA+AGG | 0.616050 | 1:-82710239 | MsG0180004781.01.T01:CDS |
| TGTGCAGCTTTGAATGACAT+TGG | 0.616404 | 1:-82709542 | MsG0180004781.01.T01:CDS |
| TACGGCCGTTTGATTTCCGG+CGG | 0.616646 | 1:-82710383 | MsG0180004781.01.T01:CDS |
| GCTAAGAACATGTACACATA+CGG | 0.618377 | 1:-82709788 | MsG0180004781.01.T01:CDS |
| AGAAGGCTTAATGATACGGA+GGG | 0.620270 | 1:-82709224 | MsG0180004781.01.T01:CDS |
| AAATAGCTATGATTGGTCAC+CGG | 0.622313 | 1:+82709266 | None:intergenic |
| AGTCTGGAGTACGCTCAAGA+AGG | 0.623685 | 1:-82709294 | MsG0180004781.01.T01:CDS |
| TGCTTACTTGAGTCAAAACA+TGG | 0.625673 | 1:-82709126 | MsG0180004781.01.T01:CDS |
| AGCTATGTCGATCTTTGAGA+AGG | 0.634352 | 1:-82709096 | MsG0180004781.01.T01:CDS |
| AGTTGGTTAATGTTATGAAG+GGG | 0.635275 | 1:-82709613 | MsG0180004781.01.T01:CDS |
| CACTTGTTGAGCCTCTATGG+TGG | 0.635576 | 1:-82709344 | MsG0180004781.01.T01:CDS |
| TCACAACTTGTGGTGAAGGA+CGG | 0.645990 | 1:+82708940 | None:intergenic |
| CAAGGGACTAATGCTAGACA+AGG | 0.652550 | 1:-82709744 | MsG0180004781.01.T01:CDS |
| TAGAAGGCTTAATGATACGG+AGG | 0.655243 | 1:-82709225 | MsG0180004781.01.T01:CDS |
| TCTTTGAGAAGGCTCTTAAG+CGG | 0.664916 | 1:-82709085 | MsG0180004781.01.T01:CDS |
| ATCGCCGACTTCTGAAAGTG+CGG | 0.674194 | 1:+82708971 | None:intergenic |
| GCTTCTCCGACGACTCTGCA+CGG | 0.683165 | 1:-82710354 | MsG0180004781.01.T01:CDS |
| GTGTACATGTTCTTAGCACG+AGG | 0.696131 | 1:+82709794 | None:intergenic |
| TACATGTTCTTAGCACGAGG+AGG | 0.697097 | 1:+82709797 | None:intergenic |
| AAACCTTTACCACAGACTAG+CGG | 0.734084 | 1:-82710297 | MsG0180004781.01.T01:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TGTTATAATAATGTTTTGAA+TGG | - | Chr1:82709201-82709220 | MsG0180004781.01.T01:CDS | 15.0% |
| !! | CATAATAAAATAGCTATGAT+TGG | + | Chr1:82709882-82709901 | None:intergenic | 20.0% |
| !!! | AATTTGATGGTTTTGTATAT+GGG | - | Chr1:82709476-82709495 | MsG0180004781.01.T01:CDS | 20.0% |
| ! | AAAAAAATATCCCTTGTCTA+TGG | + | Chr1:82709153-82709172 | None:intergenic | 25.0% |
| ! | AATAACATTGTTTAAGGAGT+GGG | - | Chr1:82709940-82709959 | MsG0180004781.01.T01:intron | 25.0% |
| ! | ATTGTTCATGCTGTATTTAT+TGG | - | Chr1:82710105-82710124 | MsG0180004781.01.T01:intron | 25.0% |
| ! | CATATACAAAACCATCAAAT+TGG | + | Chr1:82709477-82709496 | None:intergenic | 25.0% |
| ! | GAAAATGACATAAAATGTGT+TGG | + | Chr1:82709059-82709078 | None:intergenic | 25.0% |
| ! | TAATAACATTGTTTAAGGAG+TGG | - | Chr1:82709939-82709958 | MsG0180004781.01.T01:intron | 25.0% |
| ! | TGATGATTAATTATGAAGCA+CGG | + | Chr1:82709121-82709140 | None:intergenic | 25.0% |
| ! | TGTTAATTATGATACAAGGT+TGG | - | Chr1:82709973-82709992 | MsG0180004781.01.T01:intron | 25.0% |
| ! | TTTGATAAGATGGATGAATT+AGG | - | Chr1:82709428-82709447 | MsG0180004781.01.T01:CDS | 25.0% |
| !! | ATTGTCTCTTTTTGATAAGA+TGG | - | Chr1:82709418-82709437 | MsG0180004781.01.T01:CDS | 25.0% |
| !!! | AGCTTGTTAATTATGATACA+AGG | - | Chr1:82709969-82709988 | MsG0180004781.01.T01:intron | 25.0% |
| !!! | ATTTGATGGTTTTGTATATG+GGG | - | Chr1:82709477-82709496 | MsG0180004781.01.T01:CDS | 25.0% |
| !!! | CAATTTGATGGTTTTGTATA+TGG | - | Chr1:82709475-82709494 | MsG0180004781.01.T01:CDS | 25.0% |
| AAGACGAAGACAAAATTGAT+TGG | - | Chr1:82709654-82709673 | MsG0180004781.01.T01:CDS | 30.0% | |
| AATTCCTGAATCCTAAAGAA+AGG | + | Chr1:82710088-82710107 | None:intergenic | 30.0% | |
| AGTAATGCAAGTTTCAATAC+AGG | + | Chr1:82710314-82710333 | None:intergenic | 30.0% | |
| AGTTGGTTAATGTTATGAAG+GGG | - | Chr1:82709525-82709544 | MsG0180004781.01.T01:CDS | 30.0% | |
| ATTCATGACTTTCGAAAGAA+TGG | - | Chr1:82708956-82708975 | MsG0180004781.01.T01:CDS | 30.0% | |
| CAGTTGGTTAATGTTATGAA+GGG | - | Chr1:82709524-82709543 | MsG0180004781.01.T01:CDS | 30.0% | |
| CTGAATTTACATACACTGTT+TGG | - | Chr1:82709564-82709583 | MsG0180004781.01.T01:CDS | 30.0% | |
| GAAAAAGAGACAGATCTTAA+TGG | - | Chr1:82710241-82710260 | MsG0180004781.01.T01:CDS | 30.0% | |
| GGGCATAATAACATTGTTTA+AGG | - | Chr1:82709934-82709953 | MsG0180004781.01.T01:intron | 30.0% | |
| TCAGTTGGTTAATGTTATGA+AGG | - | Chr1:82709523-82709542 | MsG0180004781.01.T01:CDS | 30.0% | |
| TTAAACAGGTTTATAGAGTC+TGG | - | Chr1:82709828-82709847 | MsG0180004781.01.T01:CDS | 30.0% | |
| TTCATAACATTAACCAACTG+AGG | + | Chr1:82709524-82709543 | None:intergenic | 30.0% | |
| TTGAATCAGTATATAACCGA+AGG | - | Chr1:82708899-82708918 | MsG0180004781.01.T01:CDS | 30.0% | |
| TTTGTCTTTCACCAATTTGA+TGG | - | Chr1:82709463-82709482 | MsG0180004781.01.T01:CDS | 30.0% | |
| ! | CTTTTATATAGATAGCAGCA+AGG | + | Chr1:82709694-82709713 | None:intergenic | 30.0% |
| ! | TTTTGAATGGTTGCAGATAA+TGG | - | Chr1:82709214-82709233 | MsG0180004781.01.T01:CDS | 30.0% |
| !! | TGGTATTCATCAAGTATTGA+AGG | - | Chr1:82710351-82710370 | MsG0180004781.01.T01:CDS | 30.0% |
| AATATCCCTTGTCTATGGAT+TGG | + | Chr1:82709148-82709167 | None:intergenic | 35.0% | |
| AATTATGATACAAGGTTGGC+TGG | - | Chr1:82709977-82709996 | MsG0180004781.01.T01:intron | 35.0% | |
| ACAATCCAATCCATAGACAA+GGG | - | Chr1:82709140-82709159 | MsG0180004781.01.T01:CDS | 35.0% | |
| ATGAGTTAAGCAAGATTCTC+AGG | - | Chr1:82710269-82710288 | MsG0180004781.01.T01:CDS | 35.0% | |
| CCTTAGAAGGCTTAATGATA+CGG | - | Chr1:82709910-82709929 | MsG0180004781.01.T01:CDS | 35.0% | |
| CGTATCATTAAGCCTTCTAA+GGG | + | Chr1:82709912-82709931 | None:intergenic | 35.0% | |
| CTTCTAAACTGTTACTGCAA+GGG | - | Chr1:82709377-82709396 | MsG0180004781.01.T01:CDS | 35.0% | |
| GCTAAGAACATGTACACATA+CGG | - | Chr1:82709350-82709369 | MsG0180004781.01.T01:CDS | 35.0% | |
| GCTGCTATCTATATAAAAGC+TGG | - | Chr1:82709695-82709714 | MsG0180004781.01.T01:CDS | 35.0% | |
| TAATTATGAAGCACGGAAAG+CGG | + | Chr1:82709114-82709133 | None:intergenic | 35.0% | |
| TATCTTGTGTCCAAAGTGAA+AGG | - | Chr1:82709284-82709303 | MsG0180004781.01.T01:CDS | 35.0% | |
| TCTTCTAAACTGTTACTGCA+AGG | - | Chr1:82709376-82709395 | MsG0180004781.01.T01:CDS | 35.0% | |
| TGCTTACTTGAGTCAAAACA+TGG | - | Chr1:82710012-82710031 | MsG0180004781.01.T01:intron | 35.0% | |
| TTATGCTTTCTACCCTTAGA+AGG | - | Chr1:82709897-82709916 | MsG0180004781.01.T01:CDS | 35.0% | |
| TTCAATCACTCCTTTCACTT+TGG | + | Chr1:82709297-82709316 | None:intergenic | 35.0% | |
| TTGGAGAAATGCCAATTGAA+TGG | - | Chr1:82710124-82710143 | MsG0180004781.01.T01:intron | 35.0% | |
| ! | AAATAGCTATGATTGGTCAC+CGG | + | Chr1:82709875-82709894 | None:intergenic | 35.0% |
| ! | AACCAACTGAGGAACTTTTT+GGG | + | Chr1:82709513-82709532 | None:intergenic | 35.0% |
| ! | ATGACATAAAATGTGTTGGC+AGG | + | Chr1:82709055-82709074 | None:intergenic | 35.0% |
| ! | CTCAAGTTCACCTTTTTCTA+AGG | + | Chr1:82708930-82708949 | None:intergenic | 35.0% |
| ! | TAACCAACTGAGGAACTTTT+TGG | + | Chr1:82709514-82709533 | None:intergenic | 35.0% |
| ! | TGACATAAAATGTGTTGGCA+GGG | + | Chr1:82709054-82709073 | None:intergenic | 35.0% |
| !! | AAGCTGAGTTGATGCTTAAA+AGG | - | Chr1:82709729-82709748 | MsG0180004781.01.T01:CDS | 35.0% |
| !! | AATGGTTGCAGATAATGGAA+TGG | - | Chr1:82709219-82709238 | MsG0180004781.01.T01:CDS | 35.0% |
| !! | TGGTACTGGTAATGTTAAAC+AGG | - | Chr1:82709814-82709833 | MsG0180004781.01.T01:CDS | 35.0% |
| !!! | TTTTTCTAAGGCTTTGCCTT+CGG | + | Chr1:82708918-82708937 | None:intergenic | 35.0% |
| AAACCTTTACCACAGACTAG+CGG | - | Chr1:82708841-82708860 | MsG0180004781.01.T01:CDS | 40.0% | |
| ACTGCATCTGAATCATCTCT+TGG | - | Chr1:82710331-82710350 | MsG0180004781.01.T01:CDS | 40.0% | |
| AGAAGGCTTAATGATACGGA+GGG | - | Chr1:82709914-82709933 | MsG0180004781.01.T01:intron | 40.0% | |
| CACAATCCAATCCATAGACA+AGG | - | Chr1:82709139-82709158 | MsG0180004781.01.T01:CDS | 40.0% | |
| CCGTATCATTAAGCCTTCTA+AGG | + | Chr1:82709913-82709932 | None:intergenic | 40.0% | |
| GAAGGCAAAGCCTTAGAAAA+AGG | - | Chr1:82708917-82708936 | MsG0180004781.01.T01:CDS | 40.0% | |
| TAGAAGGCTTAATGATACGG+AGG | - | Chr1:82709913-82709932 | MsG0180004781.01.T01:intron | 40.0% | |
| ! | AATTACGGCCGTTTGATTTC+CGG | - | Chr1:82708752-82708771 | MsG0180004781.01.T01:CDS | 40.0% |
| ! | ACCAACTGAGGAACTTTTTG+GGG | + | Chr1:82709512-82709531 | None:intergenic | 40.0% |
| ! | AGCTATGTCGATCTTTGAGA+AGG | - | Chr1:82710042-82710061 | MsG0180004781.01.T01:intron | 40.0% |
| ! | GACATAAAATGTGTTGGCAG+GGG | + | Chr1:82709053-82709072 | None:intergenic | 40.0% |
| ! | TCTTTGAGAAGGCTCTTAAG+CGG | - | Chr1:82710053-82710072 | MsG0180004781.01.T01:intron | 40.0% |
| !! | AGAAAAGCACTCACAACTTG+TGG | + | Chr1:82710211-82710230 | None:intergenic | 40.0% |
| !! | AGCTTTGAATGACATTGGTG+GGG | - | Chr1:82709601-82709620 | MsG0180004781.01.T01:CDS | 40.0% |
| !! | AGGACCTTTCTTTAGGATTC+AGG | - | Chr1:82710081-82710100 | MsG0180004781.01.T01:intron | 40.0% |
| !! | CAGCTTTGAATGACATTGGT+GGG | - | Chr1:82709600-82709619 | MsG0180004781.01.T01:CDS | 40.0% |
| !! | TGTGCAGCTTTGAATGACAT+TGG | - | Chr1:82709596-82709615 | MsG0180004781.01.T01:CDS | 40.0% |
| !!! | ATGGTTTTGTATATGGGGCT+AGG | - | Chr1:82709482-82709501 | MsG0180004781.01.T01:CDS | 40.0% |
| ACCCCAAAAAGTTCCTCAGT+TGG | - | Chr1:82709508-82709527 | MsG0180004781.01.T01:CDS | 45.0% | |
| ATGACATTGGTGGGGTTGAA+AGG | - | Chr1:82709609-82709628 | MsG0180004781.01.T01:CDS | 45.0% | |
| CAAGGGACTAATGCTAGACA+AGG | - | Chr1:82709394-82709413 | MsG0180004781.01.T01:CDS | 45.0% | |
| CATAGAGGCTCAACAAGTGA+TGG | + | Chr1:82709793-82709812 | None:intergenic | 45.0% | |
| CATTACCAGTACCACCATAG+AGG | + | Chr1:82709808-82709827 | None:intergenic | 45.0% | |
| GGCTCATAGCACCATTCAAT+TGG | + | Chr1:82710138-82710157 | None:intergenic | 45.0% | |
| GGTGTAGAGGACCTTTCTTT+AGG | - | Chr1:82710074-82710093 | MsG0180004781.01.T01:intron | 45.0% | |
| GTGTACATGTTCTTAGCACG+AGG | + | Chr1:82709347-82709366 | None:intergenic | 45.0% | |
| TACATGTTCTTAGCACGAGG+AGG | + | Chr1:82709344-82709363 | None:intergenic | 45.0% | |
| TCACAACTTGTGGTGAAGGA+CGG | + | Chr1:82710201-82710220 | None:intergenic | 45.0% | |
| TGACATTGGTGGGGTTGAAA+GGG | - | Chr1:82709610-82709629 | MsG0180004781.01.T01:CDS | 45.0% | |
| TGGGGTTGAAAGGGTTTATG+AGG | - | Chr1:82709619-82709638 | MsG0180004781.01.T01:CDS | 45.0% | |
| ! | CATCACTTGTTGAGCCTCTA+TGG | - | Chr1:82709791-82709810 | MsG0180004781.01.T01:CDS | 45.0% |
| ! | GCTAGTCTGTGGTAAAGGTT+TGG | + | Chr1:82708842-82708861 | None:intergenic | 45.0% |
| ! | TAAAGGTTTGGCTTCTTCGC+CGG | + | Chr1:82708830-82708849 | None:intergenic | 45.0% |
| !! | GCAGCTTTGAATGACATTGG+TGG | - | Chr1:82709599-82709618 | MsG0180004781.01.T01:CDS | 45.0% |
| AAGGCTCTTAAGCGGTGTAG+AGG | - | Chr1:82710061-82710080 | MsG0180004781.01.T01:intron | 50.0% | |
| CAGATTCCATCTCGCATTCG+AGG | - | Chr1:82708979-82708998 | MsG0180004781.01.T01:CDS | 50.0% | |
| CGGACACTAACACTTCGACA+CGG | + | Chr1:82709094-82709113 | None:intergenic | 50.0% | |
| GAAGCCGCACTTTCAGAAGT+CGG | - | Chr1:82710163-82710182 | MsG0180004781.01.T01:CDS | 50.0% | |
| GCACTCACAACTTGTGGTGA+AGG | + | Chr1:82710205-82710224 | None:intergenic | 50.0% | |
| GTGATACCTCGAATGCGAGA+TGG | + | Chr1:82708988-82709007 | None:intergenic | 50.0% | |
| TACAACAGCAGCTGAGCTTC+CGG | - | Chr1:82708808-82708827 | MsG0180004781.01.T01:CDS | 50.0% | |
| TACGCTCAAGAAGGTCTCAC+CGG | - | Chr1:82709853-82709872 | MsG0180004781.01.T01:CDS | 50.0% | |
| TGGTAACTTTCGCGTTGCAC+TGG | + | Chr1:82709773-82709792 | None:intergenic | 50.0% | |
| TTCCTCCGCCGGAAATCAAA+CGG | + | Chr1:82708763-82708782 | None:intergenic | 50.0% | |
| TTGAGCCTCTATGGTGGTAC+TGG | - | Chr1:82709800-82709819 | MsG0180004781.01.T01:CDS | 50.0% | |
| ! | AGTCTGGAGTACGCTCAAGA+AGG | - | Chr1:82709844-82709863 | MsG0180004781.01.T01:CDS | 50.0% |
| ! | CACTTGTTGAGCCTCTATGG+TGG | - | Chr1:82709794-82709813 | MsG0180004781.01.T01:CDS | 50.0% |
| ! | CTGAAAGTGCGGCTTCTAAG+TGG | + | Chr1:82710159-82710178 | None:intergenic | 50.0% |
| !! | ATCGCCGACTTCTGAAAGTG+CGG | + | Chr1:82710170-82710189 | None:intergenic | 50.0% |
| CGTCTGCGACACAGTTTCTC+CGG | + | Chr1:82708879-82708898 | None:intergenic | 55.0% | |
| TTACCACAGACTAGCGGTGC+TGG | - | Chr1:82708847-82708866 | MsG0180004781.01.T01:CDS | 55.0% | |
| TTGTAGCCGTGCAGAGTCGT+CGG | + | Chr1:82708793-82708812 | None:intergenic | 55.0% | |
| ! | CTAGCGGTGCTGGAAAAGAC+CGG | - | Chr1:82708857-82708876 | MsG0180004781.01.T01:CDS | 55.0% |
| ! | GCACCGCTAGTCTGTGGTAA+AGG | + | Chr1:82708847-82708866 | None:intergenic | 55.0% |
| ! | GTTTGATTTCCGGCGGAGGA+AGG | - | Chr1:82708762-82708781 | MsG0180004781.01.T01:CDS | 55.0% |
| ! | TACGGCCGTTTGATTTCCGG+CGG | - | Chr1:82708755-82708774 | MsG0180004781.01.T01:CDS | 55.0% |
| ! | TTTCCAGCACCGCTAGTCTG+TGG | + | Chr1:82708853-82708872 | None:intergenic | 55.0% |
| !! | AAGGTTGGCTGGTGTTGCAG+TGG | - | Chr1:82709988-82710007 | MsG0180004781.01.T01:intron | 55.0% |
| GCTTCTCCGACGACTCTGCA+CGG | - | Chr1:82708784-82708803 | MsG0180004781.01.T01:CDS | 60.0% | |
| TCGGAGAAGCCTTCCTCCGC+CGG | + | Chr1:82708774-82708793 | None:intergenic | 65.0% | |
| ! | GGCCGTTTGATTTCCGGCGG+AGG | - | Chr1:82708758-82708777 | MsG0180004781.01.T01:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| Chr1 | gene | 82708749 | 82710411 | 82708749 | ID=MsG0180004781.01;Name=MsG0180004781.01 |
| Chr1 | mRNA | 82708749 | 82710411 | 82708749 | ID=MsG0180004781.01.T01;Parent=MsG0180004781.01;Name=MsG0180004781.01.T01;_AED=0.36;_eAED=0.36;_QI=0|0|0|1|1|1|2|0|477 |
| Chr1 | exon | 82710160 | 82710411 | 82710160 | ID=MsG0180004781.01.T01:exon:8643;Parent=MsG0180004781.01.T01 |
| Chr1 | exon | 82708749 | 82709930 | 82708749 | ID=MsG0180004781.01.T01:exon:8642;Parent=MsG0180004781.01.T01 |
| Chr1 | CDS | 82710160 | 82710411 | 82710160 | ID=MsG0180004781.01.T01:cds;Parent=MsG0180004781.01.T01 |
| Chr1 | CDS | 82708749 | 82709930 | 82708749 | ID=MsG0180004781.01.T01:cds;Parent=MsG0180004781.01.T01 |
| Gene Sequence |
| Protein sequence |
