AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0880045294.01


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0880045294.01.T01 MTR_8g069570 84.490 490 9 2 1 423 1 490 0.0 822
MsG0880045294.01.T01 MTR_1g086820 34.437 453 220 9 29 416 40 480 5.08e-70 229
MsG0880045294.01.T01 MTR_2g013450 31.831 355 214 3 79 408 127 478 1.44e-57 197
MsG0880045294.01.T01 MTR_1g072300 31.492 362 220 6 86 422 143 501 1.94e-57 197
MsG0880045294.01.T01 MTR_8g059115 28.962 366 232 4 71 411 34 396 7.51e-53 182
MsG0880045294.01.T01 MTR_8g007375 29.834 362 226 4 79 417 43 399 3.25e-51 177
MsG0880045294.01.T01 MTR_2g047855 29.940 334 188 4 23 312 31 362 8.35e-44 160
MsG0880045294.01.T01 MTR_8g465890 27.586 435 236 9 6 366 8 437 1.49e-43 159
MsG0880045294.01.T01 MTR_2g090290 32.075 318 184 6 84 371 136 451 1.04e-38 145
MsG0880045294.01.T01 MTR_3g099753 34.568 243 157 1 77 317 134 376 1.07e-38 146
MsG0880045294.01.T01 MTR_3g099753 34.568 243 157 1 77 317 158 400 1.86e-38 145
MsG0880045294.01.T01 MTR_1g022400 32.365 241 161 2 77 315 151 391 1.01e-37 141
MsG0880045294.01.T01 MTR_7g089770 23.992 471 277 14 15 417 150 607 6.59e-24 104
MsG0880045294.01.T01 MTR_1g050750 24.775 444 255 11 35 410 102 534 9.93e-23 100
MsG0880045294.01.T01 MTR_2g096880 24.156 385 255 9 69 423 132 509 4.01e-22 99.0
MsG0880045294.01.T01 MTR_8g031520 26.020 196 101 1 24 175 105 300 1.34e-14 74.3
MsG0880045294.01.T01 MTR_5g008300 25.446 224 166 1 84 307 374 596 1.81e-14 76.3
MsG0880045294.01.T01 MTR_3g448620 25.207 242 176 2 80 317 192 432 1.89e-14 75.5
MsG0880045294.01.T01 MTR_4g107210 27.200 250 168 5 62 304 154 396 4.57e-14 74.7
MsG0880045294.01.T01 MTR_6g069840 21.698 318 232 3 80 397 180 480 4.63e-14 74.3
MsG0880045294.01.T01 MTR_6g069840 21.698 318 232 3 80 397 196 496 6.77e-14 73.9
MsG0880045294.01.T01 MTR_8g107050 26.872 227 161 3 80 304 194 417 1.09e-13 73.6
MsG0880045294.01.T01 MTR_0429s0020 24.034 233 176 1 79 311 209 440 1.35e-13 72.8
MsG0880045294.01.T01 MTR_8g107050 26.754 228 162 3 79 304 193 417 1.53e-13 73.2
MsG0880045294.01.T01 MTR_5g095130 24.528 318 217 7 78 393 236 532 2.72e-13 72.4
MsG0880045294.01.T01 MTR_3g033040 23.276 232 176 2 84 314 206 436 6.36e-13 70.9
MsG0880045294.01.T01 MTR_3g033040 23.276 232 176 2 84 314 206 436 7.18e-13 70.5
MsG0880045294.01.T01 MTR_0237s0070 23.224 366 247 11 57 414 310 649 9.09e-13 70.5
MsG0880045294.01.T01 MTR_5g077220 21.037 347 213 7 99 407 346 669 1.57e-12 70.1
MsG0880045294.01.T01 MTR_8g071970 24.473 237 178 1 78 314 488 723 2.26e-12 69.3
MsG0880045294.01.T01 MTR_1g112240 24.632 272 157 6 43 313 249 473 2.75e-12 68.9
MsG0880045294.01.T01 MTR_7g012890 24.576 236 177 1 84 319 202 436 2.87e-12 68.9
MsG0880045294.01.T01 MTR_7g012890 25.541 231 171 1 84 314 307 536 3.31e-11 65.5
MsG0880045294.01.T01 MTR_0014s0250 23.729 236 179 1 84 319 201 435 2.92e-12 68.9
MsG0880045294.01.T01 MTR_0014s0250 22.944 231 142 2 84 314 306 500 9.66e-11 63.9
MsG0880045294.01.T01 MTR_4g089005 23.274 391 235 7 43 397 433 794 3.02e-12 69.3
MsG0880045294.01.T01 MTR_1g008310 21.131 336 243 7 80 412 143 459 5.22e-12 68.2
MsG0880045294.01.T01 MTR_1g066900 25.243 206 144 5 46 249 367 564 6.00e-12 68.2
MsG0880045294.01.T01 MTR_1g066900 29.252 147 103 1 80 225 429 575 7.89e-12 67.8
MsG0880045294.01.T01 MTR_1g086500 24.752 202 149 3 82 282 232 431 6.80e-12 67.4
MsG0880045294.01.T01 MTR_1g033840 23.077 182 133 2 69 250 395 569 7.13e-12 67.8
MsG0880045294.01.T01 MTR_7g017530 22.222 234 177 3 80 311 283 513 9.96e-12 67.4
MsG0880045294.01.T01 MTR_7g017570 24.878 205 153 1 117 321 320 523 1.45e-11 67.0
MsG0880045294.01.T01 MTR_7g017570 23.932 234 173 3 80 311 318 548 3.50e-11 65.9
MsG0880045294.01.T01 MTR_8g103480 19.207 328 245 5 80 404 112 422 2.30e-11 66.2
MsG0880045294.01.T01 MTR_3g105900 22.830 311 218 4 87 397 211 499 2.30e-11 66.6
MsG0880045294.01.T01 MTR_8g064830 23.430 414 252 12 29 397 395 788 2.36e-11 66.2
MsG0880045294.01.T01 MTR_4g068360 20.000 320 239 2 80 399 251 553 3.79e-11 65.5
MsG0880045294.01.T01 MTR_6g077540 23.636 275 197 5 43 316 301 563 4.71e-11 65.1
MsG0880045294.01.T01 MTR_3g037490 22.039 304 217 6 120 404 92 394 6.18e-11 64.7
MsG0880045294.01.T01 MTR_7g075010 32.331 133 88 2 86 218 221 351 6.20e-11 64.3
MsG0880045294.01.T01 MTR_7g066990 21.951 246 184 3 72 316 114 352 6.37e-11 64.7
MsG0880045294.01.T01 MTR_3g034990 22.917 240 184 1 80 319 207 445 6.57e-11 64.7
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0880045294.01.T01 AT1G60770 56.148 488 146 3 4 423 3 490 0.0 565
MsG0880045294.01.T01 AT1G02370 40.270 370 194 3 77 420 167 535 3.00e-92 288
MsG0880045294.01.T01 AT4G01990 39.024 369 196 3 77 420 136 500 3.92e-82 261
MsG0880045294.01.T01 AT1G02150 29.680 438 241 4 2 372 46 483 1.18e-58 200
MsG0880045294.01.T01 AT4G21705 28.266 467 264 5 24 421 26 490 7.52e-56 192
MsG0880045294.01.T01 AT4G02820 30.102 392 238 6 60 422 137 521 9.20e-54 187
MsG0880045294.01.T01 AT2G20710 35.628 247 157 2 69 314 32 277 1.74e-46 165
MsG0880045294.01.T01 AT2G20710 29.971 347 215 6 69 392 127 468 2.31e-45 164
MsG0880045294.01.T01 AT5G27460 28.367 349 222 3 84 407 146 491 7.75e-44 160
MsG0880045294.01.T01 AT5G09450 29.730 222 153 3 84 302 159 380 3.06e-32 126
MsG0880045294.01.T01 AT1G28020 30.278 360 225 8 69 422 125 464 1.73e-31 125
MsG0880045294.01.T01 AT1G80270 24.831 443 253 11 37 410 142 573 1.14e-25 109
MsG0880045294.01.T01 AT1G80270 24.831 443 253 11 37 410 142 573 1.14e-25 109
MsG0880045294.01.T01 AT1G80270 24.831 443 253 11 37 410 142 573 1.14e-25 109
MsG0880045294.01.T01 AT1G80270 24.831 443 253 11 37 410 142 573 1.14e-25 109
MsG0880045294.01.T01 AT1G80270 24.831 443 253 11 37 410 142 573 1.14e-25 109
MsG0880045294.01.T01 AT1G15480 25.068 367 226 6 76 410 222 571 9.92e-22 98.2
MsG0880045294.01.T01 AT1G07590 24.021 383 257 7 69 422 154 531 2.00e-19 90.9
MsG0880045294.01.T01 AT3G11380 30.638 235 127 6 84 314 146 348 1.68e-18 88.2
MsG0880045294.01.T01 AT3G15590 23.620 453 268 10 31 411 141 587 4.04e-16 80.9
MsG0880045294.01.T01 AT3G15590 23.620 453 268 10 31 411 141 587 4.04e-16 80.9
MsG0880045294.01.T01 AT3G06920 23.768 345 238 7 60 404 154 473 4.18e-16 81.3
MsG0880045294.01.T01 AT3G06920 21.849 357 253 6 61 416 189 520 1.21e-11 67.4
MsG0880045294.01.T01 AT2G35130 27.049 244 168 5 78 316 295 533 4.67e-16 80.9
MsG0880045294.01.T01 AT2G35130 27.049 244 168 5 78 316 292 530 4.73e-16 80.9
MsG0880045294.01.T01 AT3G06920 23.768 345 238 7 60 404 168 487 4.99e-16 80.9
MsG0880045294.01.T01 AT3G06920 22.346 358 250 7 61 416 203 534 1.26e-11 67.4
MsG0880045294.01.T01 AT3G06920 23.768 345 238 7 60 404 168 487 4.99e-16 80.9
MsG0880045294.01.T01 AT3G06920 22.346 358 250 7 61 416 203 534 1.26e-11 67.4
MsG0880045294.01.T01 AT2G35130 27.049 244 168 5 78 316 317 555 5.66e-16 80.5
MsG0880045294.01.T01 AT5G39980 23.143 350 244 5 44 392 159 484 1.41e-14 76.3
MsG0880045294.01.T01 AT5G39980 25.000 200 149 1 115 314 154 352 6.89e-12 67.8
MsG0880045294.01.T01 AT3G59040 24.000 350 212 7 2 314 179 511 6.35e-14 73.9
MsG0880045294.01.T01 AT3G59040 26.316 247 167 6 82 321 210 448 2.53e-11 65.9
MsG0880045294.01.T01 AT3G59040 24.000 350 212 7 2 314 186 518 9.24e-14 73.6
MsG0880045294.01.T01 AT3G59040 26.316 247 167 6 82 321 217 455 3.16e-11 65.9
MsG0880045294.01.T01 AT4G11690 24.272 206 145 3 43 248 275 469 1.33e-13 73.2
MsG0880045294.01.T01 AT4G11690 22.619 336 227 7 78 405 195 505 3.60e-11 65.5
MsG0880045294.01.T01 AT4G11690 24.272 206 145 3 43 248 248 442 1.76e-13 72.8
MsG0880045294.01.T01 AT4G11690 22.727 330 222 7 84 405 174 478 9.77e-11 63.9
MsG0880045294.01.T01 AT1G09680 22.426 272 204 2 43 314 278 542 1.82e-13 72.8
MsG0880045294.01.T01 AT3G06430 23.645 203 154 1 118 319 126 328 3.74e-13 71.6
MsG0880045294.01.T01 AT2G32630 23.263 331 232 7 103 413 211 539 3.89e-13 71.6
MsG0880045294.01.T01 AT1G03560 23.385 325 226 5 76 397 147 451 4.60e-13 71.6
MsG0880045294.01.T01 AT5G02860 26.230 183 134 1 86 268 634 815 7.75e-13 70.9
MsG0880045294.01.T01 AT5G02860 21.795 234 182 1 78 311 276 508 1.68e-11 66.6
MsG0880045294.01.T01 AT5G02860 22.794 272 203 2 40 311 489 753 5.10e-11 65.1
MsG0880045294.01.T01 AT5G02860 22.727 330 237 7 84 412 211 523 6.75e-11 64.7
MsG0880045294.01.T01 AT5G02860 22.364 313 222 6 82 374 385 696 8.26e-11 64.7
MsG0880045294.01.T01 AT5G02860 26.230 183 134 1 86 268 634 815 7.75e-13 70.9
MsG0880045294.01.T01 AT5G02860 21.795 234 182 1 78 311 276 508 1.68e-11 66.6
MsG0880045294.01.T01 AT5G02860 22.794 272 203 2 40 311 489 753 5.10e-11 65.1
MsG0880045294.01.T01 AT5G02860 22.727 330 237 7 84 412 211 523 6.75e-11 64.7
MsG0880045294.01.T01 AT5G02860 22.364 313 222 6 82 374 385 696 8.26e-11 64.7
MsG0880045294.01.T01 AT5G02860 26.230 183 134 1 86 268 634 815 7.75e-13 70.9
MsG0880045294.01.T01 AT5G02860 21.795 234 182 1 78 311 276 508 1.68e-11 66.6
MsG0880045294.01.T01 AT5G02860 22.794 272 203 2 40 311 489 753 5.10e-11 65.1
MsG0880045294.01.T01 AT5G02860 22.727 330 237 7 84 412 211 523 6.75e-11 64.7
MsG0880045294.01.T01 AT5G02860 22.364 313 222 6 82 374 385 696 8.26e-11 64.7
MsG0880045294.01.T01 AT5G02860 26.230 183 134 1 86 268 634 815 7.75e-13 70.9
MsG0880045294.01.T01 AT5G02860 21.795 234 182 1 78 311 276 508 1.68e-11 66.6
MsG0880045294.01.T01 AT5G02860 22.794 272 203 2 40 311 489 753 5.10e-11 65.1
MsG0880045294.01.T01 AT5G02860 22.727 330 237 7 84 412 211 523 6.75e-11 64.7
MsG0880045294.01.T01 AT5G02860 22.364 313 222 6 82 374 385 696 8.26e-11 64.7
MsG0880045294.01.T01 AT5G02860 26.230 183 134 1 86 268 634 815 7.75e-13 70.9
MsG0880045294.01.T01 AT5G02860 21.795 234 182 1 78 311 276 508 1.68e-11 66.6
MsG0880045294.01.T01 AT5G02860 22.794 272 203 2 40 311 489 753 5.10e-11 65.1
MsG0880045294.01.T01 AT5G02860 22.727 330 237 7 84 412 211 523 6.75e-11 64.7
MsG0880045294.01.T01 AT5G02860 22.364 313 222 6 82 374 385 696 8.26e-11 64.7
MsG0880045294.01.T01 AT2G02150 22.881 236 181 1 84 319 265 499 7.90e-13 70.9
MsG0880045294.01.T01 AT2G02150 22.881 236 181 1 84 319 265 499 7.90e-13 70.9
MsG0880045294.01.T01 AT2G31400 28.916 166 117 1 73 238 401 565 1.72e-12 70.1
MsG0880045294.01.T01 AT2G31400 24.597 248 180 2 67 314 331 571 3.78e-11 65.9
MsG0880045294.01.T01 AT4G30825 32.278 158 101 2 78 230 725 881 1.83e-12 69.7
MsG0880045294.01.T01 AT2G31400 28.916 166 117 1 73 238 401 565 1.98e-12 69.7
MsG0880045294.01.T01 AT2G31400 24.597 248 180 2 67 314 331 571 4.43e-11 65.5
MsG0880045294.01.T01 AT5G27270 21.888 233 180 2 80 312 292 522 3.29e-12 69.3
MsG0880045294.01.T01 AT1G62930 25.993 277 189 4 43 316 332 595 3.34e-12 68.9
MsG0880045294.01.T01 AT2G18940 23.789 227 161 4 24 240 565 789 3.87e-12 68.9
MsG0880045294.01.T01 AT2G18940 23.605 233 177 1 84 316 529 760 4.47e-11 65.5
MsG0880045294.01.T01 AT5G27270 21.888 233 180 2 80 312 87 317 4.07e-12 68.6
MsG0880045294.01.T01 AT5G27270 21.888 233 180 2 80 312 87 317 4.07e-12 68.6
MsG0880045294.01.T01 AT5G27270 21.888 233 180 2 80 312 292 522 4.33e-12 68.6
MsG0880045294.01.T01 AT5G27270 21.888 233 180 2 80 312 292 522 4.56e-12 68.6
MsG0880045294.01.T01 AT3G04130 27.731 238 167 5 84 318 262 497 7.32e-12 67.4
MsG0880045294.01.T01 AT3G04130 27.731 238 167 5 84 318 262 497 7.32e-12 67.4
MsG0880045294.01.T01 AT3G09060 21.923 260 187 4 60 314 99 347 7.65e-12 67.8
MsG0880045294.01.T01 AT3G09060 21.923 260 187 4 60 314 99 347 7.65e-12 67.8
MsG0880045294.01.T01 AT1G74850 22.892 415 256 9 59 413 119 529 9.52e-12 67.8
MsG0880045294.01.T01 AT5G61990 22.364 313 226 5 82 393 559 855 1.20e-11 67.4
MsG0880045294.01.T01 AT3G23020 25.763 295 195 7 118 392 369 659 1.52e-11 67.0
MsG0880045294.01.T01 AT5G12100 29.577 284 169 9 84 360 217 476 1.55e-11 67.0
MsG0880045294.01.T01 AT1G12775 21.691 272 202 3 43 314 235 495 2.04e-11 66.2
MsG0880045294.01.T01 AT3G09650 24.561 171 128 1 80 249 486 656 2.26e-11 66.2
MsG0880045294.01.T01 AT1G62590 25.000 264 183 3 43 304 337 587 2.54e-11 66.2
MsG0880045294.01.T01 AT1G62590 25.000 264 183 3 43 304 337 587 2.54e-11 66.2
MsG0880045294.01.T01 AT1G62670 23.221 267 191 4 59 319 235 493 3.04e-11 65.9
MsG0880045294.01.T01 AT1G62670 23.221 267 191 4 59 319 235 493 3.04e-11 65.9
MsG0880045294.01.T01 AT1G52640 23.438 192 142 3 82 271 244 432 3.36e-11 65.5
MsG0880045294.01.T01 AT1G02420 23.353 167 127 1 82 248 247 412 3.41e-11 65.5
MsG0880045294.01.T01 AT5G28370 27.922 154 109 2 84 236 514 666 4.47e-11 65.5
MsG0880045294.01.T01 AT3G61520 27.922 154 109 2 84 236 514 666 5.04e-11 65.1
MsG0880045294.01.T01 AT5G28460 27.922 154 109 2 84 236 514 666 5.09e-11 65.1
MsG0880045294.01.T01 AT1G63330 25.856 263 182 5 43 304 262 512 5.45e-11 65.1
MsG0880045294.01.T01 AT1G63330 25.856 263 182 5 43 304 262 512 5.45e-11 65.1
MsG0880045294.01.T01 AT1G63330 25.856 263 182 5 43 304 262 512 5.45e-11 65.1
MsG0880045294.01.T01 AT1G64583 22.078 231 179 1 84 314 84 313 5.93e-11 64.7
MsG0880045294.01.T01 AT1G63070 22.785 237 181 2 84 319 218 453 6.75e-11 64.7
MsG0880045294.01.T01 AT1G64583 22.078 231 179 1 84 314 109 338 7.79e-11 64.3
MsG0880045294.01.T01 AT5G04810 27.329 161 116 1 82 242 695 854 8.80e-11 64.7
MsG0880045294.01.T01 AT5G01110 22.662 278 202 4 43 319 242 507 9.21e-11 64.3
MsG0880045294.01.T01 AT5G25630 22.647 340 228 8 84 412 118 433 9.77e-11 64.3

Find 84 sgRNAs with CRISPR-Local

Find 208 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GCTGCAGTTAATGATATTTC+TGG 0.193804 8:+57059551 MsG0880045294.01.T01:CDS
TTTGAATATGATTCAGGTTT+TGG 0.220843 8:+57059847 MsG0880045294.01.T01:CDS
ATTACATTGTATGGGAAAAT+AGG 0.247775 8:+57059752 MsG0880045294.01.T01:CDS
CAGTTTCTAATTACATTGTA+TGG 0.264475 8:+57059743 MsG0880045294.01.T01:CDS
AAGCTATTTGAATATGATTC+AGG 0.264761 8:+57059841 MsG0880045294.01.T01:CDS
ATATAGCCTCAAGCAACTTC+TGG 0.280772 8:-57060379 None:intergenic
GTGGGAAGCGCGTTTATAAA+TGG 0.289722 8:+57057557 MsG0880045294.01.T01:CDS
GCAAAGTATATGAGGTCTAT+AGG 0.314428 8:+57059774 MsG0880045294.01.T01:CDS
CTTAATCAGTTTATTAAGAG+TGG 0.365489 8:+57057538 MsG0880045294.01.T01:CDS
ATAGGGTCTGGCGGTCTCTT+AGG 0.369780 8:+57059792 MsG0880045294.01.T01:CDS
ATTATATCAACCTGCTCTTA+AGG 0.369801 8:+57057618 MsG0880045294.01.T01:CDS
CGGAAACATTTCTCTGCTCC+TGG 0.390524 8:-57059887 None:intergenic
AGCCTTCATTTCTTGAATGA+TGG 0.403255 8:-57059477 None:intergenic
AGAAGGTGCACTTAAGGAAT+TGG 0.419645 8:+57059685 MsG0880045294.01.T01:CDS
AAGAGGGACGGTCGAGTCAC+TGG 0.436839 8:+57059599 MsG0880045294.01.T01:CDS
ATGACTCTTTATACTAAAGT+AGG 0.440667 8:+57059434 MsG0880045294.01.T01:CDS
ACATTATATGTGTAAGAATC+CGG 0.442518 8:-57059512 None:intergenic
TTCTCAGTGATGAGTGTAAC+CGG 0.451549 8:-57057374 None:intergenic
ATTCTTACACATATAATGTA+TGG 0.452805 8:+57059516 MsG0880045294.01.T01:CDS
CGCGTTTATAAATGGGAAGT+TGG 0.453242 8:+57057565 MsG0880045294.01.T01:CDS
CAAAGTATATGAGGTCTATA+GGG 0.454086 8:+57059775 MsG0880045294.01.T01:CDS
TGATATTTCTGGTGTTGAAA+GGG 0.469920 8:+57059562 MsG0880045294.01.T01:CDS
TATAGCCTCAAGCAACTTCT+GGG 0.470403 8:-57060378 None:intergenic
ATGATATTTCTGGTGTTGAA+AGG 0.474746 8:+57059561 MsG0880045294.01.T01:CDS
AGAAATCTGTGGAATCTGTT+GGG 0.480158 8:+57060249 MsG0880045294.01.T01:CDS
AAGAAATCTGTGGAATCTGT+TGG 0.481388 8:+57060248 MsG0880045294.01.T01:CDS
ATACCTATTGTCTCAGATGA+TGG 0.482076 8:-57060161 None:intergenic
GAAGGCAGAAGGTGCACTTA+AGG 0.485117 8:+57059679 MsG0880045294.01.T01:CDS
TGGGAAGCGCGTTTATAAAT+GGG 0.485728 8:+57057558 MsG0880045294.01.T01:CDS
GTTCCATCATCTGAGACAAT+AGG 0.486056 8:+57060158 MsG0880045294.01.T01:CDS
TTATCCGAAGCAATCTCAAT+TGG 0.493361 8:+57060113 MsG0880045294.01.T01:CDS
TCTACCAATTGAGATTGCTT+CGG 0.494263 8:-57060117 None:intergenic
AGTTTCTAATTACATTGTAT+GGG 0.497547 8:+57059744 MsG0880045294.01.T01:CDS
GTCCATCATTCAAGAAATGA+AGG 0.501806 8:+57059475 MsG0880045294.01.T01:CDS
GCGGAATGCAGACTTTAAGT+TGG 0.503435 8:+57060079 MsG0880045294.01.T01:intron
ACGGTCGAGTCACTGGAGAT+TGG 0.505652 8:+57059606 MsG0880045294.01.T01:CDS
ATTAGAACTTATGCCGCTGC+TGG 0.507177 8:+57060293 MsG0880045294.01.T01:CDS
GAGCAAGAGAAGGATGTTGA+TGG 0.508667 8:+57060200 MsG0880045294.01.T01:CDS
ATCTCAATTGGTAGAGGGAA+TGG 0.512168 8:+57060125 MsG0880045294.01.T01:CDS
TATATGAGGTCTATAGGGTC+TGG 0.513859 8:+57059780 MsG0880045294.01.T01:CDS
ATGTCTCTGATGCAACGTTA+CGG 0.522389 8:+57057412 MsG0880045294.01.T01:CDS
ATATGCAAAATTAGATATGC+TGG 0.523030 8:+57059970 MsG0880045294.01.T01:CDS
CGCTTAAGAAGCTGAGACAA+CGG 0.525030 8:+57057593 MsG0880045294.01.T01:CDS
TGCAGACTTTAAGTTGGCGG+TGG 0.532018 8:+57060085 MsG0880045294.01.T01:intron
CAGAGAAATGTTTCCGTGAG+TGG 0.534189 8:+57059894 MsG0880045294.01.T01:CDS
TGTGGAATCTGTTGGGGAAG+AGG 0.535027 8:+57060256 MsG0880045294.01.T01:CDS
GGAGAAGGCTGAAGAACTAA+AGG 0.536610 8:+57059991 MsG0880045294.01.T01:CDS
TAGAGGGAATGGTGAAAAGT+GGG 0.538860 8:+57060136 MsG0880045294.01.T01:CDS
GGGTTATTGATGAGATGAAG+AGG 0.539631 8:+57059582 MsG0880045294.01.T01:CDS
TTCATTTCTTGAATGATGGA+CGG 0.540856 8:-57059473 None:intergenic
GTAGAGGGAATGGTGAAAAG+TGG 0.542141 8:+57060135 MsG0880045294.01.T01:CDS
TTAATCAGTTTATTAAGAGT+GGG 0.552756 8:+57057539 MsG0880045294.01.T01:CDS
CACTTAAGGAATTGGAAAAG+AGG 0.555566 8:+57059693 MsG0880045294.01.T01:CDS
GGTCTGGCGGTCTCTTAGGT+TGG 0.556962 8:+57059796 MsG0880045294.01.T01:CDS
GAATGCAGACTTTAAGTTGG+CGG 0.558777 8:+57060082 MsG0880045294.01.T01:intron
GAAGCAATCTCAATTGGTAG+AGG 0.560595 8:+57060119 MsG0880045294.01.T01:CDS
TATGAAACGACGATTGAAGA+TGG 0.562202 8:+57060331 MsG0880045294.01.T01:CDS
GGTTATTGATGAGATGAAGA+GGG 0.563994 8:+57059583 MsG0880045294.01.T01:CDS
AAAATTAGATATGCTGGAGA+AGG 0.565481 8:+57059976 MsG0880045294.01.T01:CDS
GAAAATAGGCAAAGTATATG+AGG 0.565787 8:+57059766 MsG0880045294.01.T01:CDS
AAGGAATTGGAAAAGAGGAA+TGG 0.570113 8:+57059698 MsG0880045294.01.T01:CDS
TACTTGAAACTCTTCAAAGA+CGG 0.580431 8:+57057487 MsG0880045294.01.T01:CDS
AGAGAAATGTTTCCGTGAGT+GGG 0.581496 8:+57059895 MsG0880045294.01.T01:CDS
CGAAATCTTGAAGAAATCTG+TGG 0.586042 8:+57060238 MsG0880045294.01.T01:CDS
GGAAACATTTCTCTGCTCCT+GGG 0.587345 8:-57059886 None:intergenic
GAACTTATGCCGCTGCTGGT+AGG 0.590784 8:+57060297 MsG0880045294.01.T01:CDS
AATTTACATGAATCACTCCT+CGG 0.599378 8:-57060402 None:intergenic
TGCAGCTCGACTCCCACTCA+CGG 0.604824 8:-57059907 None:intergenic
CATCAACATAAATAGACGCA+AGG 0.616654 8:-57059643 None:intergenic
TTGAAACTCTTCAAAGACGG+TGG 0.620058 8:+57057490 MsG0880045294.01.T01:CDS
AACATGTTTGAGAAGGCAGA+AGG 0.623532 8:+57059668 MsG0880045294.01.T01:CDS
AAGCAATCTCAATTGGTAGA+GGG 0.624857 8:+57060120 MsG0880045294.01.T01:CDS
GAAGGCTAGCAATATCATGC+CGG 0.629396 8:+57059493 MsG0880045294.01.T01:CDS
AGCACTTGTCCTACCAGCAG+CGG 0.633534 8:-57060306 None:intergenic
GAAGCACTACGAGCAAGAGA+AGG 0.634627 8:+57060190 MsG0880045294.01.T01:CDS
GTTAACTTGAAAGATCTCCC+AGG 0.640592 8:+57059869 MsG0880045294.01.T01:CDS
TTATAAGACAGTGAACTCAA+AGG 0.644951 8:-57059404 None:intergenic
TGATGCTAACATGTTTGAGA+AGG 0.651168 8:+57059661 MsG0880045294.01.T01:CDS
ATGAGGTCTATAGGGTCTGG+CGG 0.666314 8:+57059783 MsG0880045294.01.T01:CDS
ATTGATGAGATGAAGAGGGA+CGG 0.670634 8:+57059587 MsG0880045294.01.T01:CDS
GAAATCTGTGGAATCTGTTG+GGG 0.676021 8:+57060250 MsG0880045294.01.T01:CDS
GTTGCTTGAGGCTATATCCG+AGG 0.682538 8:+57060385 MsG0880045294.01.T01:CDS
TTGATGACTGATAAAGCTGA+AGG 0.689860 8:+57059350 MsG0880045294.01.T01:CDS
AGATGCCCAGAAGTTGCTTG+AGG 0.693369 8:+57060373 MsG0880045294.01.T01:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TGAAAAATAAGATTATATAT+TGG + Chr8:57057704-57057723 MsG0880045294.01.T01:intron 10.0%
!! AATAAAATGATATATTAGCT+TGG + Chr8:57058660-57058679 MsG0880045294.01.T01:intron 15.0%
!! TATGAAAATAAGCTAAAAAA+AGG + Chr8:57057989-57058008 MsG0880045294.01.T01:intron 15.0%
!!! ATAAAATGATATATTAGCTT+GGG + Chr8:57058661-57058680 MsG0880045294.01.T01:intron 15.0%
!!! GCAAATTGTTAATTTTTTTT+TGG + Chr8:57058798-57058817 MsG0880045294.01.T01:intron 15.0%
!!! GTTGTTTTTATAAACTATTT+TGG + Chr8:57057960-57057979 MsG0880045294.01.T01:intron 15.0%
!! AGTTTCTAATTACATTGTAT+GGG + Chr8:57059744-57059763 MsG0880045294.01.T01:CDS 20.0%
!! ATTCTTACACATATAATGTA+TGG + Chr8:57059516-57059535 MsG0880045294.01.T01:CDS 20.0%
!! CATATACACTTAACATATAA+GGG + Chr8:57058239-57058258 MsG0880045294.01.T01:intron 20.0%
!! TATCATAGAATCATAAAATG+AGG + Chr8:57058703-57058722 MsG0880045294.01.T01:intron 20.0%
!! TGTTCCATAATTTATATTCA+TGG + Chr8:57059122-57059141 MsG0880045294.01.T01:intron 20.0%
!! TTAATCAGTTTATTAAGAGT+GGG + Chr8:57057539-57057558 MsG0880045294.01.T01:CDS 20.0%
!! TTCTCCATGAATATAAATTA+TGG - Chr8:57059129-57059148 None:intergenic 20.0%
!!! AATAAGATTATATATTGGCT+TGG + Chr8:57057709-57057728 MsG0880045294.01.T01:intron 20.0%
!!! TGGGTTAACTTTTTTTTTTT+GGG - Chr8:57058585-57058604 None:intergenic 20.0%
!!! TTGGGTTAACTTTTTTTTTT+TGG - Chr8:57058586-57058605 None:intergenic 20.0%
! AAGCTATTTGAATATGATTC+AGG + Chr8:57059841-57059860 MsG0880045294.01.T01:CDS 25.0%
! ACATTATATGTGTAAGAATC+CGG - Chr8:57059515-57059534 None:intergenic 25.0%
! ATATGCAAAATTAGATATGC+TGG + Chr8:57059970-57059989 MsG0880045294.01.T01:CDS 25.0%
! ATGACTCTTTATACTAAAGT+AGG + Chr8:57059434-57059453 MsG0880045294.01.T01:CDS 25.0%
! ATTACATTGTATGGGAAAAT+AGG + Chr8:57059752-57059771 MsG0880045294.01.T01:CDS 25.0%
! CAGTTTCTAATTACATTGTA+TGG + Chr8:57059743-57059762 MsG0880045294.01.T01:CDS 25.0%
! CTTAATCAGTTTATTAAGAG+TGG + Chr8:57057538-57057557 MsG0880045294.01.T01:CDS 25.0%
! GAGTTGTAGTTTATGAAATA+TGG + Chr8:57058117-57058136 MsG0880045294.01.T01:intron 25.0%
! GCATATACACTTAACATATA+AGG + Chr8:57058238-57058257 MsG0880045294.01.T01:intron 25.0%
! GCTATATCTATATGTTTCTT+AGG + Chr8:57058179-57058198 MsG0880045294.01.T01:intron 25.0%
!! ACTAAGTTGAAAATAATCGA+TGG + Chr8:57058362-57058381 MsG0880045294.01.T01:intron 25.0%
!! GATAGTGTTGTTATTCATTT+AGG + Chr8:57057797-57057816 MsG0880045294.01.T01:intron 25.0%
!! TTATTCATTTAGGTTCTGTT+TGG + Chr8:57057807-57057826 MsG0880045294.01.T01:intron 25.0%
!!! ATTTTTTGGATTACCATTTG+CGG + Chr8:57060060-57060079 MsG0880045294.01.T01:intron 25.0%
!!! CAAAAACTTGGGAAATTTTT+TGG + Chr8:57060046-57060065 MsG0880045294.01.T01:intron 25.0%
!!! GTTAATTTTTTTTTGGTGTG+TGG + Chr8:57058805-57058824 MsG0880045294.01.T01:intron 25.0%
!!! TACATTTAAGCGCTTTTTTT+AGG + Chr8:57057647-57057666 MsG0880045294.01.T01:intron 25.0%
!!! TTATTACTACGTGTTTTTTC+TGG + Chr8:57057754-57057773 MsG0880045294.01.T01:intron 25.0%
!!! TTTGAATATGATTCAGGTTT+TGG + Chr8:57059847-57059866 MsG0880045294.01.T01:CDS 25.0%
AAAATTAGATATGCTGGAGA+AGG + Chr8:57059976-57059995 MsG0880045294.01.T01:CDS 30.0%
AACCTAGAAACACACAAATT+TGG - Chr8:57058605-57058624 None:intergenic 30.0%
ACCTAGAAACACACAAATTT+GGG - Chr8:57058604-57058623 None:intergenic 30.0%
ATTATATCAACCTGCTCTTA+AGG + Chr8:57057618-57057637 MsG0880045294.01.T01:CDS 30.0%
ATTGCTTATAGTGTGGTTAT+AGG + Chr8:57058911-57058930 MsG0880045294.01.T01:intron 30.0%
CAAAGTATATGAGGTCTATA+GGG + Chr8:57059775-57059794 MsG0880045294.01.T01:CDS 30.0%
CATAAACTACAACTCACTAA+GGG - Chr8:57058112-57058131 None:intergenic 30.0%
CCAAATCAATATGTATAGCT+TGG - Chr8:57059221-57059240 None:intergenic 30.0%
GAAAATAGGCAAAGTATATG+AGG + Chr8:57059766-57059785 MsG0880045294.01.T01:CDS 30.0%
TAATATCCAAGCAGAACTAA+AGG - Chr8:57058836-57058855 None:intergenic 30.0%
TACTTGAAACTCTTCAAAGA+CGG + Chr8:57057487-57057506 MsG0880045294.01.T01:CDS 30.0%
TCAAATTAGCCAATCTAGAA+GGG + Chr8:57058086-57058105 MsG0880045294.01.T01:intron 30.0%
TCATAAACTACAACTCACTA+AGG - Chr8:57058113-57058132 None:intergenic 30.0%
TCTGCTTGGATATTAATATC+AGG + Chr8:57058841-57058860 MsG0880045294.01.T01:intron 30.0%
TGTAAAAATACCTTAAGAGC+AGG - Chr8:57057631-57057650 None:intergenic 30.0%
TTATAAGACAGTGAACTCAA+AGG - Chr8:57059407-57059426 None:intergenic 30.0%
! ATGATATATTAGCTTGGGTT+TGG + Chr8:57058666-57058685 MsG0880045294.01.T01:intron 30.0%
! ATTTCCCAAGTTTTTGCATT+AGG - Chr8:57060042-57060061 None:intergenic 30.0%
! CCAAGCTATACATATTGATT+TGG + Chr8:57059218-57059237 MsG0880045294.01.T01:intron 30.0%
! GTATGTTGATGTTGATTATG+TGG + Chr8:57059040-57059059 MsG0880045294.01.T01:intron 30.0%
! GTTTTTCTGCATAATTTAGC+AGG + Chr8:57058776-57058795 MsG0880045294.01.T01:intron 30.0%
! TAGCTTATGTTTGCAGTTTT+AGG - Chr8:57059827-57059846 None:intergenic 30.0%
! TTCATTTCTTGAATGATGGA+CGG - Chr8:57059476-57059495 None:intergenic 30.0%
!! AGGTGTCATTGAAAAAATGA+AGG + Chr8:57059370-57059389 MsG0880045294.01.T01:CDS 30.0%
!! ATGATATTTCTGGTGTTGAA+AGG + Chr8:57059561-57059580 MsG0880045294.01.T01:CDS 30.0%
!! TAGCTATAAGCTGTTTTCAT+AGG + Chr8:57058319-57058338 MsG0880045294.01.T01:intron 30.0%
!! TGATATTTCTGGTGTTGAAA+GGG + Chr8:57059562-57059581 MsG0880045294.01.T01:CDS 30.0%
!!! AGTTGCAAATGTTTTGATAG+GGG + Chr8:57059946-57059965 MsG0880045294.01.T01:CDS 30.0%
!!! GAGTTGCAAATGTTTTGATA+GGG + Chr8:57059945-57059964 MsG0880045294.01.T01:CDS 30.0%
!!! TTTTTTCTGGATGTGAAACT+GGG + Chr8:57057767-57057786 MsG0880045294.01.T01:intron 30.0%
AAGAAATCTGTGGAATCTGT+TGG + Chr8:57060248-57060267 MsG0880045294.01.T01:CDS 35.0%
AAGCAATCTCAATTGGTAGA+GGG + Chr8:57060120-57060139 MsG0880045294.01.T01:CDS 35.0%
AAGGAATTGGAAAAGAGGAA+TGG + Chr8:57059698-57059717 MsG0880045294.01.T01:CDS 35.0%
ACCCAAATTTGTGTGTTTCT+AGG + Chr8:57058600-57058619 MsG0880045294.01.T01:intron 35.0%
AGAAATCTGTGGAATCTGTT+GGG + Chr8:57060249-57060268 MsG0880045294.01.T01:CDS 35.0%
AGCACAAAACCATTTGCAAA+AGG - Chr8:57058884-57058903 None:intergenic 35.0%
AGCCTTCATTTCTTGAATGA+TGG - Chr8:57059480-57059499 None:intergenic 35.0%
ATACCTATTGTCTCAGATGA+TGG - Chr8:57060164-57060183 None:intergenic 35.0%
CAAGCCTAATGCAAAAACTT+GGG + Chr8:57060035-57060054 MsG0880045294.01.T01:intron 35.0%
CAATCAAACCTCCTTAAAAC+AGG - Chr8:57058947-57058966 None:intergenic 35.0%
CACTTAAGGAATTGGAAAAG+AGG + Chr8:57059693-57059712 MsG0880045294.01.T01:CDS 35.0%
CATCAACATAAATAGACGCA+AGG - Chr8:57059646-57059665 None:intergenic 35.0%
CGAAATCTTGAAGAAATCTG+TGG + Chr8:57060238-57060257 MsG0880045294.01.T01:CDS 35.0%
CTCAAATTAGCCAATCTAGA+AGG + Chr8:57058085-57058104 MsG0880045294.01.T01:intron 35.0%
GAGCATTTATGAGCATGTTT+GGG - Chr8:57058417-57058436 None:intergenic 35.0%
GCAAAGTATATGAGGTCTAT+AGG + Chr8:57059774-57059793 MsG0880045294.01.T01:CDS 35.0%
GCTGCAGTTAATGATATTTC+TGG + Chr8:57059551-57059570 MsG0880045294.01.T01:CDS 35.0%
GCTTGGATATTAATATCAGG+TGG + Chr8:57058844-57058863 MsG0880045294.01.T01:intron 35.0%
GGATATTAATATCAGGTGGT+GGG + Chr8:57058848-57058867 MsG0880045294.01.T01:intron 35.0%
GGTCTTTATCATATTCCTCT+TGG - Chr8:57059190-57059209 None:intergenic 35.0%
GGTTATTGATGAGATGAAGA+GGG + Chr8:57059583-57059602 MsG0880045294.01.T01:CDS 35.0%
GTCCATCATTCAAGAAATGA+AGG + Chr8:57059475-57059494 MsG0880045294.01.T01:CDS 35.0%
GTTTGATTGTTCATTCTGTG+TGG + Chr8:57058958-57058977 MsG0880045294.01.T01:intron 35.0%
TATGAAACGACGATTGAAGA+TGG + Chr8:57060331-57060350 MsG0880045294.01.T01:CDS 35.0%
TCTACCAATTGAGATTGCTT+CGG - Chr8:57060120-57060139 None:intergenic 35.0%
TGAGCATTTATGAGCATGTT+TGG - Chr8:57058418-57058437 None:intergenic 35.0%
TGATGCTAACATGTTTGAGA+AGG + Chr8:57059661-57059680 MsG0880045294.01.T01:CDS 35.0%
TGGATATTAATATCAGGTGG+TGG + Chr8:57058847-57058866 MsG0880045294.01.T01:intron 35.0%
TGTTAGTGTCAACCTTTGTT+AGG + Chr8:57058734-57058753 MsG0880045294.01.T01:intron 35.0%
TTATCCGAAGCAATCTCAAT+TGG + Chr8:57060113-57060132 MsG0880045294.01.T01:CDS 35.0%
! AGTGAACACTTTTGAATCTC+CGG + Chr8:57057355-57057374 MsG0880045294.01.T01:five_prime_UTR 35.0%
! TTGATGACTGATAAAGCTGA+AGG + Chr8:57059350-57059369 MsG0880045294.01.T01:CDS 35.0%
!!! CGAGTTGCAAATGTTTTGAT+AGG + Chr8:57059944-57059963 MsG0880045294.01.T01:CDS 35.0%
!!! GTTTTGGTTCCTTTTGCAAA+TGG + Chr8:57058872-57058891 MsG0880045294.01.T01:intron 35.0%
!!! GTTTTTTCTGGATGTGAAAC+TGG + Chr8:57057766-57057785 MsG0880045294.01.T01:intron 35.0%
!!! TTGCAAATGGTTTTGTGCTA+GGG + Chr8:57058885-57058904 MsG0880045294.01.T01:intron 35.0%
!!! TTGTCTGTTTTTGGTCTTTG+TGG + Chr8:57058981-57059000 MsG0880045294.01.T01:intron 35.0%
!!! TTTGCAAATGGTTTTGTGCT+AGG + Chr8:57058884-57058903 MsG0880045294.01.T01:intron 35.0%
AACATGTTTGAGAAGGCAGA+AGG + Chr8:57059668-57059687 MsG0880045294.01.T01:CDS 40.0%
AAGTCAATCCAAAACCCACT+TGG + Chr8:57058459-57058478 MsG0880045294.01.T01:intron 40.0%
ACCTTTACCTTGCCTAACAA+AGG - Chr8:57058749-57058768 None:intergenic 40.0%
ACCTTTGTTAGGCAAGGTAA+AGG + Chr8:57058745-57058764 MsG0880045294.01.T01:intron 40.0%
AGAGAAATGTTTCCGTGAGT+GGG + Chr8:57059895-57059914 MsG0880045294.01.T01:CDS 40.0%
AGTCAATCCAAAACCCACTT+GGG + Chr8:57058460-57058479 MsG0880045294.01.T01:intron 40.0%
ATATAGCCTCAAGCAACTTC+TGG - Chr8:57060382-57060401 None:intergenic 40.0%
ATCTCAATTGGTAGAGGGAA+TGG + Chr8:57060125-57060144 MsG0880045294.01.T01:CDS 40.0%
ATGTATAGCTTGGTCACTGA+CGG - Chr8:57059211-57059230 None:intergenic 40.0%
ATGTCTCTGATGCAACGTTA+CGG + Chr8:57057412-57057431 MsG0880045294.01.T01:CDS 40.0%
ATTGATGAGATGAAGAGGGA+CGG + Chr8:57059587-57059606 MsG0880045294.01.T01:CDS 40.0%
CCAAATTAGTGCACCGAAAT+TGG - Chr8:57058559-57058578 None:intergenic 40.0%
CCAAGCCTAATGCAAAAACT+TGG + Chr8:57060034-57060053 MsG0880045294.01.T01:intron 40.0%
CGCGTTTATAAATGGGAAGT+TGG + Chr8:57057565-57057584 MsG0880045294.01.T01:CDS 40.0%
GAAATCTGTGGAATCTGTTG+GGG + Chr8:57060250-57060269 MsG0880045294.01.T01:CDS 40.0%
GAAGCAATCTCAATTGGTAG+AGG + Chr8:57060119-57060138 MsG0880045294.01.T01:CDS 40.0%
GCGAAAAATCATCTGTGCTA+TGG + Chr8:57059299-57059318 MsG0880045294.01.T01:CDS 40.0%
GCTTATAGTGTGGTTATAGG+TGG + Chr8:57058914-57058933 MsG0880045294.01.T01:intron 40.0%
GGATGTGAAACTGGGTTATA+AGG + Chr8:57057775-57057794 MsG0880045294.01.T01:intron 40.0%
GGGTTATTGATGAGATGAAG+AGG + Chr8:57059582-57059601 MsG0880045294.01.T01:CDS 40.0%
GGTCTTTGTGGTTTCTGATT+TGG + Chr8:57058993-57059012 MsG0880045294.01.T01:intron 40.0%
GTTGCAGCTATCAGAAACAA+TGG + Chr8:57059164-57059183 MsG0880045294.01.T01:intron 40.0%
TAAAGTCTGCATTCCGCAAA+TGG - Chr8:57060076-57060095 None:intergenic 40.0%
TAGAGGGAATGGTGAAAAGT+GGG + Chr8:57060136-57060155 MsG0880045294.01.T01:CDS 40.0%
TATAGCCTCAAGCAACTTCT+GGG - Chr8:57060381-57060400 None:intergenic 40.0%
TATATGAGGTCTATAGGGTC+TGG + Chr8:57059780-57059799 MsG0880045294.01.T01:CDS 40.0%
TATCAGAAACAATGGCCAAG+AGG + Chr8:57059172-57059191 MsG0880045294.01.T01:intron 40.0%
TTCTCAGTGATGAGTGTAAC+CGG - Chr8:57057377-57057396 None:intergenic 40.0%
TTGAAACTCTTCAAAGACGG+TGG + Chr8:57057490-57057509 MsG0880045294.01.T01:CDS 40.0%
! AGAAGGTGCACTTAAGGAAT+TGG + Chr8:57059685-57059704 MsG0880045294.01.T01:CDS 40.0%
! AGATGATTTTTCGCAGACTC+GGG - Chr8:57059293-57059312 None:intergenic 40.0%
! ATATTAGCTTGGGTTTGGAG+CGG + Chr8:57058671-57058690 MsG0880045294.01.T01:intron 40.0%
! CAGATGATTTTTCGCAGACT+CGG - Chr8:57059294-57059313 None:intergenic 40.0%
! CCAAGTTTTTGCATTAGGCT+TGG - Chr8:57060037-57060056 None:intergenic 40.0%
! CCAATTTCGGTGCACTAATT+TGG + Chr8:57058556-57058575 MsG0880045294.01.T01:intron 40.0%
! CGTTGCATCAGAGACATTTT+TGG - Chr8:57057409-57057428 None:intergenic 40.0%
! GATTTGGTTGCAAAAGCTAG+AGG + Chr8:57059234-57059253 MsG0880045294.01.T01:intron 40.0%
! GTGGATTTGTGCCTGTTTTA+AGG + Chr8:57058933-57058952 MsG0880045294.01.T01:intron 40.0%
! GTTAACTTGAAAGATCTCCC+AGG + Chr8:57059869-57059888 MsG0880045294.01.T01:CDS 40.0%
! GTTCCATCATCTGAGACAAT+AGG + Chr8:57060158-57060177 MsG0880045294.01.T01:CDS 40.0%
! TCTCTAAATCTAGAGCTGCA+TGG - Chr8:57059083-57059102 None:intergenic 40.0%
! TCTGTGTGGTTGTCTGTTTT+TGG + Chr8:57058972-57058991 MsG0880045294.01.T01:intron 40.0%
! TGGGAAGCGCGTTTATAAAT+GGG + Chr8:57057558-57057577 MsG0880045294.01.T01:CDS 40.0%
!! GAATAGCCTTTAGTTCTGCT+TGG + Chr8:57058827-57058846 MsG0880045294.01.T01:intron 40.0%
!! GAATGCAGACTTTAAGTTGG+CGG + Chr8:57060082-57060101 MsG0880045294.01.T01:intron 40.0%
!! TCTGATTTGGCTTAGACTCT+TGG + Chr8:57059006-57059025 MsG0880045294.01.T01:intron 40.0%
!!! ATGATGGACGGAATCTTTTC+TGG - Chr8:57059464-57059483 None:intergenic 40.0%
!!! GATTTGTGCCTGTTTTAAGG+AGG + Chr8:57058936-57058955 MsG0880045294.01.T01:intron 40.0%
AACGAACTTGAGACCTTGAG+AGG - Chr8:57058525-57058544 None:intergenic 45.0%
AATCCAAAACCCACTTGGGT+TGG + Chr8:57058464-57058483 MsG0880045294.01.T01:intron 45.0%
ATTAGAACTTATGCCGCTGC+TGG + Chr8:57060293-57060312 MsG0880045294.01.T01:CDS 45.0%
CAGAGAAATGTTTCCGTGAG+TGG + Chr8:57059894-57059913 MsG0880045294.01.T01:CDS 45.0%
CGCTTAAGAAGCTGAGACAA+CGG + Chr8:57057593-57057612 MsG0880045294.01.T01:CDS 45.0%
GAAGGCTAGCAATATCATGC+CGG + Chr8:57059493-57059512 MsG0880045294.01.T01:CDS 45.0%
GAGCAAGAGAAGGATGTTGA+TGG + Chr8:57060200-57060219 MsG0880045294.01.T01:CDS 45.0%
GCGGAATGCAGACTTTAAGT+TGG + Chr8:57060079-57060098 MsG0880045294.01.T01:intron 45.0%
GGAAACATTTCTCTGCTCCT+GGG - Chr8:57059889-57059908 None:intergenic 45.0%
GGAGAAGGCTGAAGAACTAA+AGG + Chr8:57059991-57060010 MsG0880045294.01.T01:CDS 45.0%
GTAGAGGGAATGGTGAAAAG+TGG + Chr8:57060135-57060154 MsG0880045294.01.T01:CDS 45.0%
GTCTCAAGTTCGTTTCTCTC+CGG + Chr8:57058531-57058550 MsG0880045294.01.T01:intron 45.0%
GTGTCAACCTTTGTTAGGCA+AGG + Chr8:57058739-57058758 MsG0880045294.01.T01:intron 45.0%
GTTGATTATGTGGTCGTGTC+TGG + Chr8:57059050-57059069 MsG0880045294.01.T01:intron 45.0%
! AAGAACTAAAGGAGCGTGCT+CGG + Chr8:57060002-57060021 MsG0880045294.01.T01:intron 45.0%
! GATGATTTTTCGCAGACTCG+GGG - Chr8:57059292-57059311 None:intergenic 45.0%
! GTGGGAAGCGCGTTTATAAA+TGG + Chr8:57057557-57057576 MsG0880045294.01.T01:CDS 45.0%
! TTTCTCTCCGGTGCCAATTT+CGG + Chr8:57058543-57058562 MsG0880045294.01.T01:intron 45.0%
!! AGGGTGGATTGCTTATAGTG+TGG + Chr8:57058904-57058923 MsG0880045294.01.T01:intron 45.0%
!!! ATATCAGGTGGTGGGTGTTT+TGG + Chr8:57058856-57058875 MsG0880045294.01.T01:intron 45.0%
!!! CAAATGGTTTTGTGCTAGGG+TGG + Chr8:57058888-57058907 MsG0880045294.01.T01:intron 45.0%
AGATGCCCAGAAGTTGCTTG+AGG + Chr8:57060373-57060392 MsG0880045294.01.T01:CDS 50.0%
ATGAGGTCTATAGGGTCTGG+CGG + Chr8:57059783-57059802 MsG0880045294.01.T01:CDS 50.0%
CACTAAGGGCCCTTCTAGAT+TGG - Chr8:57058098-57058117 None:intergenic 50.0%
CGGAAACATTTCTCTGCTCC+TGG - Chr8:57059890-57059909 None:intergenic 50.0%
GTTGCTTGAGGCTATATCCG+AGG + Chr8:57060385-57060404 MsG0880045294.01.T01:CDS 50.0%
TAGTGCACCGAAATTGGCAC+CGG - Chr8:57058553-57058572 None:intergenic 50.0%
TGTGGAATCTGTTGGGGAAG+AGG + Chr8:57060256-57060275 MsG0880045294.01.T01:CDS 50.0%
! GAAGCACTACGAGCAAGAGA+AGG + Chr8:57060190-57060209 MsG0880045294.01.T01:CDS 50.0%
! GAAGGCAGAAGGTGCACTTA+AGG + Chr8:57059679-57059698 MsG0880045294.01.T01:CDS 50.0%
!! TGCAGACTTTAAGTTGGCGG+TGG + Chr8:57060085-57060104 MsG0880045294.01.T01:intron 50.0%
ACGGTCGAGTCACTGGAGAT+TGG + Chr8:57059606-57059625 MsG0880045294.01.T01:CDS 55.0%
AGCACTTGTCCTACCAGCAG+CGG - Chr8:57060309-57060328 None:intergenic 55.0%
ATAGGGTCTGGCGGTCTCTT+AGG + Chr8:57059792-57059811 MsG0880045294.01.T01:CDS 55.0%
GAACTTATGCCGCTGCTGGT+AGG + Chr8:57060297-57060316 MsG0880045294.01.T01:CDS 55.0%
! AACTAAAGGAGCGTGCTCGG+AGG + Chr8:57060005-57060024 MsG0880045294.01.T01:intron 55.0%
! TGGTGTGGGCTTGGTACCTT+GGG + Chr8:57058492-57058511 MsG0880045294.01.T01:intron 55.0%
!! AAAACCCACTTGGGTTGGCC+TGG + Chr8:57058469-57058488 MsG0880045294.01.T01:intron 55.0%
!! AGGCCAACCCAAGTGGGTTT+TGG - Chr8:57058470-57058489 None:intergenic 55.0%
AAGAGGGACGGTCGAGTCAC+TGG + Chr8:57059599-57059618 MsG0880045294.01.T01:CDS 60.0%
ACCACCAGGCCAACCCAAGT+GGG - Chr8:57058476-57058495 None:intergenic 60.0%
CTTGGGGTGTGCTCCTCTCA+AGG + Chr8:57058509-57058528 MsG0880045294.01.T01:intron 60.0%
GGTCTGGCGGTCTCTTAGGT+TGG + Chr8:57059796-57059815 MsG0880045294.01.T01:CDS 60.0%
TGCAGCTCGACTCCCACTCA+CGG - Chr8:57059910-57059929 None:intergenic 60.0%
! AAAGGAGCGTGCTCGGAGGA+GGG + Chr8:57060009-57060028 MsG0880045294.01.T01:intron 60.0%
! CTTGAGAGGAGCACACCCCA+AGG - Chr8:57058511-57058530 None:intergenic 60.0%
! GGTGTGGGCTTGGTACCTTG+GGG + Chr8:57058493-57058512 MsG0880045294.01.T01:intron 60.0%
! GTGGTGTGGGCTTGGTACCT+TGG + Chr8:57058491-57058510 MsG0880045294.01.T01:intron 60.0%
! TAAAGGAGCGTGCTCGGAGG+AGG + Chr8:57060008-57060027 MsG0880045294.01.T01:intron 60.0%
!! TTGGGTTGGCCTGGTGGTGT+GGG + Chr8:57058478-57058497 MsG0880045294.01.T01:intron 60.0%
CACCACCAGGCCAACCCAAG+TGG - Chr8:57058477-57058496 None:intergenic 65.0%
GGTACCAAGCCCACACCACC+AGG - Chr8:57058490-57058509 None:intergenic 65.0%
! AAGGAGCGTGCTCGGAGGAG+GGG + Chr8:57060010-57060029 MsG0880045294.01.T01:intron 65.0%
! TTGGCCTGGTGGTGTGGGCT+TGG + Chr8:57058483-57058502 MsG0880045294.01.T01:intron 65.0%
!! ACCCACTTGGGTTGGCCTGG+TGG + Chr8:57058472-57058491 MsG0880045294.01.T01:intron 65.0%
!! CTTGGGTTGGCCTGGTGGTG+TGG + Chr8:57058477-57058496 MsG0880045294.01.T01:intron 65.0%
! AGGAGCGTGCTCGGAGGAGG+GGG + Chr8:57060011-57060030 MsG0880045294.01.T01:intron 70.0%
Chromosome Type Strat End Strand Name
Chr8 gene 57057333 57060412 57057333 ID=MsG0880045294.01;Name=MsG0880045294.01
Chr8 mRNA 57057333 57060412 57057333 ID=MsG0880045294.01.T01;Parent=MsG0880045294.01;Name=MsG0880045294.01.T01;_AED=0.44;_eAED=0.44;_QI=79|0|0.33|1|1|1|3|0|423
Chr8 exon 57057333 57057639 57057333 ID=MsG0880045294.01.T01:exon:24392;Parent=MsG0880045294.01.T01
Chr8 exon 57059296 57060016 57059296 ID=MsG0880045294.01.T01:exon:24393;Parent=MsG0880045294.01.T01
Chr8 exon 57060090 57060412 57060090 ID=MsG0880045294.01.T01:exon:24394;Parent=MsG0880045294.01.T01
Chr8 five_prime_UTR 57057333 57057411 57057333 ID=MsG0880045294.01.T01:five_prime_utr;Parent=MsG0880045294.01.T01
Chr8 CDS 57057412 57057639 57057412 ID=MsG0880045294.01.T01:cds;Parent=MsG0880045294.01.T01
Chr8 CDS 57059296 57060016 57059296 ID=MsG0880045294.01.T01:cds;Parent=MsG0880045294.01.T01
Chr8 CDS 57060090 57060412 57060090 ID=MsG0880045294.01.T01:cds;Parent=MsG0880045294.01.T01
Gene Sequence

>MsG0880045294.01.T01

ATGTCTCTGATGCAACGTTACGGTAAATGCAAAAGCGTTGTGAAACGATCAAAAAAGTACTTAGACGAAGCGCTTTACTTGAAACTCTTCAAAGACGGTGGTTCTGAACTCAATGTTCGTCAACAGCTTAATCAGTTTATTAAGAGTGGGAAGCGCGTTTATAAATGGGAAGTTGGTGATACGCTTAAGAAGCTGAGACAACGGAAATTATATCAACCTGCTCTTAAGTCTGCGAAAAATCATCTGTGCTATGGTGCACTTCTCAACTGCTACTGCAAAGAGTTGATGACTGATAAAGCTGAAGGTGTCATTGAAAAAATGAAGGATCTTGACTTTCCTTTGAGTTCACTGTCTTATAATAGTCTTATGACTCTTTATACTAAAGTAGGTCAACCAGAAAAGATTCCGTCCATCATTCAAGAAATGAAGGCTAGCAATATCATGCCGGATTCTTACACATATAATGTATGGATGAGAGCTCTTGCTGCAGTTAATGATATTTCTGGTGTTGAAAGGGTTATTGATGAGATGAAGAGGGACGGTCGAGTCACTGGAGATTGGACAACATATAGCAACCTTGCGTCTATTTATGTTGATGCTAACATGTTTGAGAAGGCAGAAGGTGCACTTAAGGAATTGGAAAAGAGGAATGGTTACAAAGATCTTTCTGCTTATCAGTTTCTAATTACATTGTATGGGAAAATAGGCAAAGTATATGAGGTCTATAGGGTCTGGCGGTCTCTTAGGTTGGCATTTCCTAAAACTGCAAACATAAGCTATTTGAATATGATTCAGGTTTTGGTTAACTTGAAAGATCTCCCAGGAGCAGAGAAATGTTTCCGTGAGTGGGAGTCGAGCTGCAGTACTTATGATATTCGAGTTGCAAATGTTTTGATAGGGGCATATGCAAAATTAGATATGCTGGAGAAGGCTGAAGAACTAAAGGAGCACTTTAAGTTGGCGGTGGATTGTTTATCCGAAGCAATCTCAATTGGTAGAGGGAATGGTGAAAAGTGGGTTCCATCATCTGAGACAATAGGTATTATGATGAAGCACTACGAGCAAGAGAAGGATGTTGATGGTGCAGAAGAATTCATCGAAATCTTGAAGAAATCTGTGGAATCTGTTGGGGAAGAGGTGTTTGAATCATTGATTAGAACTTATGCCGCTGCTGGTAGGACAAGTGCTGCTATGAAACGACGATTGAAGATGGAAAATGTGAACGTGAATGAAGATGCCCAGAAGTTGCTTGAGGCTATATCCGAGGAGTGA

Protein sequence

>MsG0880045294.01.T01

MSLMQRYGKCKSVVKRSKKYLDEALYLKLFKDGGSELNVRQQLNQFIKSGKRVYKWEVGDTLKKLRQRKLYQPALKSAKNHLCYGALLNCYCKELMTDKAEGVIEKMKDLDFPLSSLSYNSLMTLYTKVGQPEKIPSIIQEMKASNIMPDSYTYNVWMRALAAVNDISGVERVIDEMKRDGRVTGDWTTYSNLASIYVDANMFEKAEGALKELEKRNGYKDLSAYQFLITLYGKIGKVYEVYRVWRSLRLAFPKTANISYLNMIQVLVNLKDLPGAEKCFREWESSCSTYDIRVANVLIGAYAKLDMLEKAEELKEHFKLAVDCLSEAISIGRGNGEKWVPSSETIGIMMKHYEQEKDVDGAEEFIEILKKSVESVGEEVFESLIRTYAAAGRTSAAMKRRLKMENVNVNEDAQKLLEAISEE*