AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0180005018.01

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0180005018.01.T01 MTR_1g090920 69.732 598 48 8 15 518 15 573 0.0 748
MsG0180005018.01.T01 MTR_1g090920 100.000 66 0 0 520 585 706 771 6.15e-34 137
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0180005018.01.T01 AT5G04500 43.396 583 189 12 39 518 23 567 1.87e-147 444
MsG0180005018.01.T01 AT5G04500 59.091 66 26 1 521 585 700 765 5.95e-17 85.1

Find 165 sgRNAs with CRISPR-Local

Find 340 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CATGAATCTCTTTCCCCTTT+TGG 0.113758 1:-85716536 MsG0180005018.01.T01:CDS
CTTTCCTTTGCAGTGGAAAT+TGG 0.156359 1:-85714242 MsG0180005018.01.T01:CDS
ACAAACCACCTTTCACAAAA+TGG 0.177905 1:-85716789 MsG0180005018.01.T01:exon
GGATCCATTGCTAGCTTCTA+TGG 0.216390 1:-85716584 MsG0180005018.01.T01:CDS
TCAATGGGTTTAAGAGAAAA+AGG 0.241800 1:+85716456 None:intergenic
GGCTCGGATCATAGTGGTTT+TGG 0.264045 1:-85714148 MsG0180005018.01.T01:CDS
GAAGTTTAGCCGATCGAAAA+TGG 0.272899 1:-85712675 MsG0180005018.01.T01:CDS
AGATTTCCTTCGTATTTAAA+TGG 0.276458 1:+85714000 None:intergenic
GATGGGGATCGTGTTCCTTC+TGG 0.287009 1:-85713769 MsG0180005018.01.T01:CDS
CTGCTATACTCATGTGCTAT+TGG 0.307562 1:-85713700 MsG0180005018.01.T01:CDS
AAAACGGGCAGTTGGAGATT+TGG 0.333853 1:-85714117 MsG0180005018.01.T01:intron
ATCACCATGCAAGGTGATAT+TGG 0.334120 1:-85714517 MsG0180005018.01.T01:CDS
AATGAGGGTTCTTGGTCTAT+TGG 0.334831 1:-85716500 MsG0180005018.01.T01:CDS
TGGTGGTTGGATTGGTGTTA+TGG 0.341798 1:-85713791 MsG0180005018.01.T01:CDS
TGTGCATCTGTTTCTGATGC+TGG 0.345247 1:-85716056 MsG0180005018.01.T01:CDS
TCCTTTATCATTGACTATGA+TGG 0.346859 1:-85714187 MsG0180005018.01.T01:CDS
GAGACTCATCCCGCGGTTCA+TGG 0.348082 1:-85713747 MsG0180005018.01.T01:CDS
CAATGATAAAGGAATCAATA+AGG 0.348404 1:+85714197 None:intergenic
TCCTTATGTATTGAGCATAA+TGG 0.350883 1:-85714416 MsG0180005018.01.T01:CDS
TGCTATACTCATGTGCTATT+GGG 0.375821 1:-85713699 MsG0180005018.01.T01:CDS
TAGCACCATTCCACGCATTT+CGG 0.380197 1:+85713848 None:intergenic
CCCATCATAGTCAATGATAA+AGG 0.384298 1:+85714186 None:intergenic
CTTTGTATTCATCAGCTGTA+AGG 0.385106 1:+85713911 None:intergenic
CAGAGCCACCGCGTTACAAA+TGG 0.391018 1:+85716814 None:intergenic
GGAATCTAACTTCCTTGTCT+TGG 0.391386 1:-85713612 MsG0180005018.01.T01:CDS
AATTGGTTCATTCATAACTC+TGG 0.403047 1:-85713640 MsG0180005018.01.T01:CDS
AGAGAAACTTACAAATTCAA+TGG 0.403178 1:+85716440 None:intergenic
GAATCTAACTTCCTTGTCTT+GGG 0.411558 1:-85713611 MsG0180005018.01.T01:CDS
CAAACCACCTTTCACAAAAT+GGG 0.413046 1:-85716788 MsG0180005018.01.T01:exon
GACAGTTGATTATGTGAAAC+CGG 0.419715 1:-85712806 MsG0180005018.01.T01:CDS
CGATGATAGCGCGGCTTGGC+CGG 0.421476 1:-85716099 MsG0180005018.01.T01:CDS
AATGATAAAGGAATCAATAA+GGG 0.426417 1:+85714198 None:intergenic
AATTCTTTGTCTCATAGAAC+AGG 0.427122 1:+85714542 None:intergenic
ATGGGTTCCGGTCAGATTAA+CGG 0.429979 1:-85716770 MsG0180005018.01.T01:CDS
AGTTTCAAAGAGTACGGATA+AGG 0.433171 1:-85714494 MsG0180005018.01.T01:CDS
CTTCCGTCTGGTGGTTGGAT+TGG 0.439567 1:-85713799 MsG0180005018.01.T01:CDS
GGTTGGATTGGTGTTATGGA+TGG 0.439578 1:-85713787 MsG0180005018.01.T01:CDS
AATTGTATGTCCCTCTCAAT+TGG 0.439759 1:-85713657 MsG0180005018.01.T01:CDS
GTTACTACCACCACCGTTGT+TGG 0.445693 1:+85716724 None:intergenic
TTGATTATGTGAAACCGGCT+TGG 0.446271 1:-85712801 MsG0180005018.01.T01:CDS
GCCATTATGCTCAATACATA+AGG 0.451284 1:+85714415 None:intergenic
CCATTGCTAGCTTCTATGGT+TGG 0.451469 1:-85716580 MsG0180005018.01.T01:CDS
CGACAGTAGGAGAGATGGTT+GGG 0.452982 1:-85712647 MsG0180005018.01.T01:CDS
TGATTATGTGAAACCGGCTT+GGG 0.453603 1:-85712800 MsG0180005018.01.T01:CDS
CAAAGAAATTGAAGTACCAT+TGG 0.455009 1:-85713893 MsG0180005018.01.T01:CDS
TGCGAGTATTGACCTTTCAA+TGG 0.455048 1:+85713389 None:intergenic
ATGATGACAATGAGGGTTCT+TGG 0.455448 1:-85716508 MsG0180005018.01.T01:CDS
GAGAAACTTACAAATTCAAT+GGG 0.460045 1:+85716441 None:intergenic
AAGTTTAGCCGATCGAAAAT+GGG 0.461026 1:-85712674 MsG0180005018.01.T01:CDS
GTTGGATTGGTGTTATGGAT+GGG 0.465211 1:-85713786 MsG0180005018.01.T01:CDS
AACATCTTCCGTCTGGTGGT+TGG 0.471135 1:-85713804 MsG0180005018.01.T01:CDS
ACTTACCTGAATAAAAGAAA+AGG 0.471866 1:+85716009 None:intergenic
TTGGATTGGTGTTATGGATG+GGG 0.476704 1:-85713785 MsG0180005018.01.T01:CDS
CCTTTATCATTGACTATGAT+GGG 0.476834 1:-85714186 MsG0180005018.01.T01:CDS
AAAGAAATTGAAGTACCATT+GGG 0.480045 1:-85713892 MsG0180005018.01.T01:CDS
ACCACCAGACGGAAGATGTT+GGG 0.480499 1:+85713807 None:intergenic
ACCTTTCACAAAATGGGTTC+CGG 0.482042 1:-85716782 MsG0180005018.01.T01:exon
TAATGTCAATATGAGTGAAC+AGG 0.483126 1:+85714587 None:intergenic
TTTGTATTCATCAGCTGTAA+GGG 0.484731 1:+85713912 None:intergenic
TTGACTATGATGGGAAGTAT+TGG 0.487593 1:-85714177 MsG0180005018.01.T01:CDS
AAGATGCCAATCCTCATTCA+AGG 0.491489 1:+85714444 None:intergenic
CGAAGGAAATCTTTACCGTA+TGG 0.492098 1:-85713989 MsG0180005018.01.T01:CDS
GAATCTAGATCACTAACTTC+CGG 0.493581 1:+85713245 None:intergenic
TGTCATCATGACAACCAAAA+GGG 0.495807 1:+85716522 None:intergenic
AAATCTTTACCGTATGGGTC+AGG 0.496835 1:-85713983 MsG0180005018.01.T01:CDS
TTGTTACATGGAAGTGATGA+TGG 0.499083 1:-85716152 MsG0180005018.01.T01:intron
TTGTCATCATGACAACCAAA+AGG 0.500668 1:+85716521 None:intergenic
GTGCTATTGGGTGTGTTGCT+CGG 0.501820 1:-85713687 MsG0180005018.01.T01:CDS
CTCATCCCGCGGTTCATGGT+TGG 0.503194 1:-85713743 MsG0180005018.01.T01:CDS
AGAGCCACCGCGTTACAAAT+GGG 0.508463 1:+85716815 None:intergenic
ATTGGTTCATTCATAACTCT+GGG 0.512978 1:-85713639 MsG0180005018.01.T01:CDS
GGGTCAGCAACAAAATTACT+TGG 0.515463 1:+85716030 None:intergenic
TCATATTGACATTACAATCC+AGG 0.515809 1:-85714578 MsG0180005018.01.T01:CDS
CAGGACTGTGGTGATACGTA+TGG 0.516883 1:-85713964 MsG0180005018.01.T01:CDS
GATGCCCAACATCTTCCGTC+TGG 0.516909 1:-85713811 MsG0180005018.01.T01:CDS
ACTAGGAATTGCCTTGAATG+AGG 0.521328 1:-85714455 MsG0180005018.01.T01:CDS
TAGCAATGGATCCAAAGAAA+AGG 0.521642 1:+85716594 None:intergenic
GTTTCAAAGAGTACGGATAA+GGG 0.523002 1:-85714493 MsG0180005018.01.T01:CDS
CATTGCACTTTCCTTTGCAG+TGG 0.523498 1:-85714249 MsG0180005018.01.T01:CDS
TATTGGAGTTTCAAAGAGTA+CGG 0.524365 1:-85714500 MsG0180005018.01.T01:CDS
AGAAGAACTTATCCATTGAA+AGG 0.528597 1:-85713401 MsG0180005018.01.T01:CDS
ACAGGTAAAGAGTATCTCCC+TGG 0.530316 1:+85714560 None:intergenic
CTTACCTGAATAAAAGAAAA+GGG 0.531054 1:+85716010 None:intergenic
GGTCAGATTAACGGCGGTGT+AGG 0.532670 1:-85716761 MsG0180005018.01.T01:CDS
GAATTGCCTTGAATGAGGAT+TGG 0.533054 1:-85714450 MsG0180005018.01.T01:CDS
GATAATGCACCTTCGTGTTG+CGG 0.533746 1:+85712740 None:intergenic
GTGATATGAGTATGAAGTGT+TGG 0.534977 1:-85716694 MsG0180005018.01.T01:CDS
GAAAATGGGGATTCGACAGT+AGG 0.535860 1:-85712660 MsG0180005018.01.T01:CDS
ATTAACGGCGGTGTAGGCGG+CGG 0.540315 1:-85716755 MsG0180005018.01.T01:CDS
CAGATTAACGGCGGTGTAGG+CGG 0.542388 1:-85716758 MsG0180005018.01.T01:CDS
GAAAGAGATTCATGAACAGA+AGG 0.544334 1:+85716545 None:intergenic
TCGACAGTAGGAGAGATGGT+TGG 0.545034 1:-85712648 MsG0180005018.01.T01:CDS
GCCCAACATCTTCCGTCTGG+TGG 0.546456 1:-85713808 MsG0180005018.01.T01:CDS
TGAGTATGAAGTGTTGGTGT+AGG 0.549917 1:-85716688 MsG0180005018.01.T01:CDS
ATCACAGATATATATGATGC+CGG 0.552195 1:-85714308 MsG0180005018.01.T01:intron
GTCACCACAGGATTCGCTAC+CGG 0.553989 1:+85716080 None:intergenic
ATGTATTGAGCATAATGGCC+AGG 0.558124 1:-85714411 MsG0180005018.01.T01:CDS
ATGCCGGAAGGGAGTAAAAG+AGG 0.559467 1:-85714292 MsG0180005018.01.T01:CDS
TGGTGATACGTATGGGAGAC+GGG 0.560756 1:-85713956 MsG0180005018.01.T01:CDS
AACCACCAGACGGAAGATGT+TGG 0.564336 1:+85713806 None:intergenic
TCATTCATAACTCTGGGAAG+AGG 0.566130 1:-85713633 MsG0180005018.01.T01:CDS
CGAACGATGATAGCGCGGCT+TGG 0.572568 1:-85716103 MsG0180005018.01.T01:CDS
AAGAGCCGAAATGCGTGGAA+TGG 0.573439 1:-85713853 MsG0180005018.01.T01:CDS
GTTCCACAGGCGAGCATCGT+AGG 0.573695 1:+85713346 None:intergenic
AACTCCAATATCACCTTGCA+TGG 0.573916 1:+85714513 None:intergenic
CGTTCTCTTCAAAAGTAAGA+CGG 0.576152 1:-85713576 MsG0180005018.01.T01:intron
GTTGCGGCTAATCGCTGCAC+CGG 0.576470 1:+85712756 None:intergenic
TTGTATGAACTGTCAAATGC+GGG 0.576891 1:-85716841 MsG0180005018.01.T01:five_prime_UTR
CACAACCAACCATGAACCGC+GGG 0.576997 1:+85713738 None:intergenic
TACACCGCCGTTAATCTGAC+CGG 0.577914 1:+85716763 None:intergenic
GTGGAACAAGGGAATCCCTC+CGG 0.579260 1:-85713264 MsG0180005018.01.T01:CDS
AAGAATTCAATCACCATGCA+AGG 0.579369 1:-85714526 MsG0180005018.01.T01:CDS
GGAGCAACATGGCAGCAACT+AGG 0.582780 1:-85714472 MsG0180005018.01.T01:CDS
GTATGAAGTGTTGGTGTAGG+TGG 0.583861 1:-85716685 MsG0180005018.01.T01:CDS
CATACATCTTCAAGTTCCAC+AGG 0.588362 1:+85713333 None:intergenic
CAGATATATATGATGCCGGA+AGG 0.589587 1:-85714304 MsG0180005018.01.T01:CDS
GATCGTTGTGGTGTGGAACA+AGG 0.592038 1:-85713276 MsG0180005018.01.T01:CDS
CATATTGACATTACAATCCA+GGG 0.599579 1:-85714577 MsG0180005018.01.T01:CDS
AGGACTGTGGTGATACGTAT+GGG 0.601094 1:-85713963 MsG0180005018.01.T01:CDS
TCTCATACCAACAACGGTGG+TGG 0.606083 1:-85716731 MsG0180005018.01.T01:CDS
ATGATAAAGGAATCAATAAG+GGG 0.606565 1:+85714199 None:intergenic
GATGTTGGGCATCTAAGTGA+TGG 0.607555 1:+85713821 None:intergenic
GGCAGGCCATTTAAATACGA+AGG 0.608753 1:-85714006 MsG0180005018.01.T01:intron
GGTTGTCATGATGACAATGA+GGG 0.609801 1:-85716515 MsG0180005018.01.T01:CDS
AGCGATTAGCCGCAACACGA+AGG 0.609845 1:-85712749 MsG0180005018.01.T01:CDS
GTGATCTAGATTCAGCGGTA+CGG 0.610416 1:-85713235 MsG0180005018.01.T01:intron
TACCGTATGGGTCAGGACTG+TGG 0.613693 1:-85713976 MsG0180005018.01.T01:CDS
GAAGTGTCGATAGCCCAAGC+CGG 0.614580 1:+85712787 None:intergenic
GAAGGAAATCTTTACCGTAT+GGG 0.615740 1:-85713988 MsG0180005018.01.T01:CDS
ATTTGGTCTTTCCCAAGACA+AGG 0.619015 1:+85713600 None:intergenic
GTGGTGATACGTATGGGAGA+CGG 0.619253 1:-85713957 MsG0180005018.01.T01:CDS
TTCTGTGTCTGAGATCGTTG+TGG 0.621604 1:-85713288 MsG0180005018.01.T01:CDS
TGACCTACGATGCTCGCCTG+TGG 0.622217 1:-85713349 MsG0180005018.01.T01:CDS
GTCATCATGACAACCAAAAG+GGG 0.624661 1:+85716523 None:intergenic
GGATTCGACAGTAGGAGAGA+TGG 0.626958 1:-85712652 MsG0180005018.01.T01:CDS
CCTTCTGGAGACTCATCCCG+CGG 0.630275 1:-85713754 MsG0180005018.01.T01:CDS
AGATATATATGATGCCGGAA+GGG 0.631328 1:-85714303 MsG0180005018.01.T01:CDS
TATGAATGAACCAATTGAGA+GGG 0.632355 1:+85713647 None:intergenic
AGTTTAGCCGATCGAAAATG+GGG 0.632696 1:-85712673 MsG0180005018.01.T01:CDS
CAAACAAGAGCCGAAATGCG+TGG 0.635974 1:-85713858 MsG0180005018.01.T01:CDS
TGGTTGTCATGATGACAATG+AGG 0.636031 1:-85716516 MsG0180005018.01.T01:CDS
ACAGATGCACAAGTCACCAC+AGG 0.637261 1:+85716068 None:intergenic
CACCACAGTCCTGACCCATA+CGG 0.637381 1:+85713974 None:intergenic
ATCGTTGTGGTGTGGAACAA+GGG 0.644387 1:-85713275 MsG0180005018.01.T01:CDS
TTATGAATGAACCAATTGAG+AGG 0.646864 1:+85713646 None:intergenic
TCTAGATCACTAACTTCCGG+AGG 0.648134 1:+85713248 None:intergenic
GCGACCCATTTGTAACGCGG+TGG 0.652150 1:-85716819 MsG0180005018.01.T01:five_prime_UTR
CTAGATCACTAACTTCCGGA+GGG 0.652302 1:+85713249 None:intergenic
CAAATGCTAGTTCATCGTCA+AGG 0.655114 1:-85712828 MsG0180005018.01.T01:intron
AGTTAGTGATCTAGATTCAG+CGG 0.661489 1:-85713240 MsG0180005018.01.T01:CDS
CCGCGGGATGAGTCTCCAGA+AGG 0.662749 1:+85713754 None:intergenic
CCAACCATAGAAGCTAGCAA+TGG 0.663121 1:+85716580 None:intergenic
TGTCTGAGATCGTTGTGGTG+TGG 0.663302 1:-85713283 MsG0180005018.01.T01:CDS
ACACCAATCCAACCACCAGA+CGG 0.667048 1:+85713796 None:intergenic
GTTGTATGAACTGTCAAATG+CGG 0.667708 1:-85716842 MsG0180005018.01.T01:five_prime_UTR
GGCGGTTCTCATACCAACAA+CGG 0.667983 1:-85716737 MsG0180005018.01.T01:CDS
TTTGACTCAACAAAGCCCAA+TGG 0.669676 1:+85713877 None:intergenic
CGGGCGACCCATTTGTAACG+CGG 0.673342 1:-85716822 MsG0180005018.01.T01:five_prime_UTR
TGTATCGAACGATGATAGCG+CGG 0.689557 1:-85716108 MsG0180005018.01.T01:CDS
GCACAACCAACCATGAACCG+CGG 0.690459 1:+85713737 None:intergenic
TTGGCCGGTAGCGAATCCTG+TGG 0.708560 1:-85716084 MsG0180005018.01.T01:CDS
GCATTTGACAGTTCATACAA+CGG 0.712330 1:+85716844 None:intergenic
GTACGGATAAGGGAGCAACA+TGG 0.724011 1:-85714483 MsG0180005018.01.T01:CDS
GGTTCTCATACCAACAACGG+TGG 0.754572 1:-85716734 MsG0180005018.01.T01:CDS
GGTTCCGGTCAGATTAACGG+CGG 0.764385 1:-85716767 MsG0180005018.01.T01:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATATAAAAAATAAAATACCT+AGG + Chr1:85714963-85714982 None:intergenic 10.0%
!! TAACAATATGTATATAAAAA+AGG + Chr1:85713719-85713738 None:intergenic 10.0%
!! AAAGTAAAACTAAATAATAC+AGG - Chr1:85714256-85714275 MsG0180005018.01.T01:CDS 15.0%
!! AAGTAAAACTAAATAATACA+GGG - Chr1:85714257-85714276 MsG0180005018.01.T01:CDS 15.0%
!! GTAGGATTTAAAAATATTTA+TGG - Chr1:85716150-85716169 MsG0180005018.01.T01:intron 15.0%
!! TTGAACAGTATAATTAAAAT+TGG - Chr1:85714669-85714688 MsG0180005018.01.T01:intron 15.0%
!!! AAATGAGTTTTTTTTTTAAC+TGG - Chr1:85713369-85713388 MsG0180005018.01.T01:CDS 15.0%
!!! AATGAGTTTTTTTTTTAACT+GGG - Chr1:85713370-85713389 MsG0180005018.01.T01:CDS 15.0%
!!! GTAAATTTACTTTATTTTCA+CGG + Chr1:85715209-85715228 None:intergenic 15.0%
!!! TGATAAAGATTCTTAATTTT+AGG - Chr1:85714055-85714074 MsG0180005018.01.T01:intron 15.0%
!! AAAAATATTTATGGTGGTAA+TGG - Chr1:85716159-85716178 MsG0180005018.01.T01:intron 20.0%
!! AATGATAAAGGAATCAATAA+GGG + Chr1:85715391-85715410 None:intergenic 20.0%
!! ATAAATGAGATGAAAGTTTA+TGG - Chr1:85713894-85713913 MsG0180005018.01.T01:CDS 20.0%
!! CAAAAAATTTAGTTGCAATA+GGG - Chr1:85714125-85714144 MsG0180005018.01.T01:CDS 20.0%
!! GGATTTAAAAATATTTATGG+TGG - Chr1:85716153-85716172 MsG0180005018.01.T01:intron 20.0%
!! TCTTGTCAATGTTATAAATA+GGG + Chr1:85715540-85715559 None:intergenic 20.0%
!! TTCTTTATTCCTTTGTATAT+TGG - Chr1:85713615-85713634 MsG0180005018.01.T01:CDS 20.0%
!!! CAATTGTCTAATGAAATTTT+CGG - Chr1:85716879-85716898 MsG0180005018.01.T01:five_prime_UTR 20.0%
!!! CATTGTTTTCTCATTTTTTT+GGG - Chr1:85714720-85714739 MsG0180005018.01.T01:intron 20.0%
!!! TCATTGTTTTCTCATTTTTT+TGG - Chr1:85714719-85714738 MsG0180005018.01.T01:intron 20.0%
!!! TGAAATTCTTTTCCAAATTT+AGG - Chr1:85714464-85714483 MsG0180005018.01.T01:CDS 20.0%
! AAAATTCACAACACATAACA+AGG + Chr1:85713313-85713332 None:intergenic 25.0%
! AAATTCACAACACATAACAA+GGG + Chr1:85713312-85713331 None:intergenic 25.0%
! AAGGTTTATTCTTAACTACA+AGG - Chr1:85713955-85713974 MsG0180005018.01.T01:CDS 25.0%
! ACTTACCTGAATAAAAGAAA+AGG + Chr1:85713580-85713599 None:intergenic 25.0%
! AGAGAAACTTACAAATTCAA+TGG + Chr1:85713149-85713168 None:intergenic 25.0%
! AGATTTCCTTCGTATTTAAA+TGG + Chr1:85715589-85715608 None:intergenic 25.0%
! ATAAAAAAGGTGAGAATTTC+TGG + Chr1:85713706-85713725 None:intergenic 25.0%
! ATCAAGCTTCAATTAATTGA+GGG + Chr1:85713780-85713799 None:intergenic 25.0%
! ATGATAAAGGAATCAATAAG+GGG + Chr1:85715390-85715409 None:intergenic 25.0%
! CAATGATAAAGGAATCAATA+AGG + Chr1:85715392-85715411 None:intergenic 25.0%
! CCAAAAAATTTAGTTGCAAT+AGG - Chr1:85714124-85714143 MsG0180005018.01.T01:CDS 25.0%
! CTCTTGTCAATGTTATAAAT+AGG + Chr1:85715541-85715560 None:intergenic 25.0%
! CTTACCTGAATAAAAGAAAA+GGG + Chr1:85713579-85713598 None:intergenic 25.0%
! CTTATAGCAAAATCATCAAT+TGG - Chr1:85714006-85714025 MsG0180005018.01.T01:intron 25.0%
! CTTGTCAATGTTATAAATAG+GGG + Chr1:85715539-85715558 None:intergenic 25.0%
! GAGAAACTTACAAATTCAAT+GGG + Chr1:85713148-85713167 None:intergenic 25.0%
! TACTGTTCAAAGAGTAAATT+AGG + Chr1:85714659-85714678 None:intergenic 25.0%
! TATATCTATCTATGTGTTGA+AGG - Chr1:85714095-85714114 MsG0180005018.01.T01:intron 25.0%
! TATCAAGCTTCAATTAATTG+AGG + Chr1:85713781-85713800 None:intergenic 25.0%
! TCTGATTATGACATCATATA+TGG - Chr1:85713871-85713890 MsG0180005018.01.T01:CDS 25.0%
! TTATGTTGTTCTTATCTACA+AGG - Chr1:85713936-85713955 MsG0180005018.01.T01:CDS 25.0%
! TTTCCTTTCTCAAACAAAAT+AGG + Chr1:85714412-85714431 None:intergenic 25.0%
!! AAAGAAATTGAAGTACCATT+GGG - Chr1:85715694-85715713 MsG0180005018.01.T01:intron 25.0%
!! TTAAAGTTTAGGATCTGTAT+TGG - Chr1:85714570-85714589 MsG0180005018.01.T01:CDS 25.0%
!! TTGTTATGTGTTGTGAATTT+TGG - Chr1:85713312-85713331 MsG0180005018.01.T01:CDS 25.0%
!! TTTTCCAAATTTAGGAACAA+AGG - Chr1:85714472-85714491 MsG0180005018.01.T01:CDS 25.0%
!!! CCTATTGCAACTAAATTTTT+TGG + Chr1:85714127-85714146 None:intergenic 25.0%
!!! GGGTATTTGTTTTTATGATT+TGG - Chr1:85713390-85713409 MsG0180005018.01.T01:CDS 25.0%
!!! GTTTTTATGATTTGGTTTGA+GGG - Chr1:85713398-85713417 MsG0180005018.01.T01:CDS 25.0%
!!! TACTGATTTTTGACTTAGTT+TGG + Chr1:85714767-85714786 None:intergenic 25.0%
!!! TGTTTTTATGATTTGGTTTG+AGG - Chr1:85713397-85713416 MsG0180005018.01.T01:CDS 25.0%
!!! TTTCGCTTTTTTGTTGTTTT+TGG + Chr1:85712720-85712739 None:intergenic 25.0%
!!! TTTTTATGATTTGGTTTGAG+GGG - Chr1:85713399-85713418 MsG0180005018.01.T01:CDS 25.0%
AAAGGTGAATCAGTATCATA+AGG - Chr1:85714490-85714509 MsG0180005018.01.T01:CDS 30.0%
AATGAGATGAAAGTTTATGG+TGG - Chr1:85713897-85713916 MsG0180005018.01.T01:CDS 30.0%
AATTCTTTGTCTCATAGAAC+AGG + Chr1:85715047-85715066 None:intergenic 30.0%
ACATGAACATGAACATCTAT+AGG + Chr1:85714835-85714854 None:intergenic 30.0%
ACTCGTTAATCACATTATTG+AGG - Chr1:85714926-85714945 MsG0180005018.01.T01:intron 30.0%
AGAAAACAATGAAGCAAAAG+AGG + Chr1:85714711-85714730 None:intergenic 30.0%
AGAAGAACTTATCCATTGAA+AGG - Chr1:85716185-85716204 MsG0180005018.01.T01:intron 30.0%
ATCACAGATATATATGATGC+CGG - Chr1:85715278-85715297 MsG0180005018.01.T01:intron 30.0%
ATGAGATGAAAGTTTATGGT+GGG - Chr1:85713898-85713917 MsG0180005018.01.T01:CDS 30.0%
CATATTGACATTACAATCCA+GGG - Chr1:85715009-85715028 MsG0180005018.01.T01:intron 30.0%
CATTATGCTTTATCTTACCT+CGG + Chr1:85716071-85716090 None:intergenic 30.0%
CTTACTATAATCTTTGTAGC+TGG - Chr1:85716111-85716130 MsG0180005018.01.T01:CDS 30.0%
CTTGATATGAGAATGTTACA+TGG - Chr1:85713794-85713813 MsG0180005018.01.T01:CDS 30.0%
CTTTCTCAAACAAAATAGGA+TGG + Chr1:85714408-85714427 None:intergenic 30.0%
GTTATTTATCAACCAAGTGA+TGG + Chr1:85714179-85714198 None:intergenic 30.0%
TAATGTCAATATGAGTGAAC+AGG + Chr1:85715002-85715021 None:intergenic 30.0%
TATAACATTGACAAGAGCTT+GGG - Chr1:85715544-85715563 MsG0180005018.01.T01:intron 30.0%
TATGAATGAACCAATTGAGA+GGG + Chr1:85715942-85715961 None:intergenic 30.0%
TATTGGAGTTTCAAAGAGTA+CGG - Chr1:85715086-85715105 MsG0180005018.01.T01:intron 30.0%
TCAATTAATTGAGGGATTAG+TGG + Chr1:85713772-85713791 None:intergenic 30.0%
TCATATTGACATTACAATCC+AGG - Chr1:85715008-85715027 MsG0180005018.01.T01:intron 30.0%
TCCTTATGTATTGAGCATAA+TGG - Chr1:85715170-85715189 MsG0180005018.01.T01:intron 30.0%
TTATAACATTGACAAGAGCT+TGG - Chr1:85715543-85715562 MsG0180005018.01.T01:intron 30.0%
TTATGAATGAACCAATTGAG+AGG + Chr1:85715943-85715962 None:intergenic 30.0%
TTCACCTTTGTTCCTAAATT+TGG + Chr1:85714479-85714498 None:intergenic 30.0%
TTTGTATTCATCAGCTGTAA+GGG + Chr1:85715677-85715696 None:intergenic 30.0%
! AATTGGTTCATTCATAACTC+TGG - Chr1:85715946-85715965 MsG0180005018.01.T01:intron 30.0%
! ACAGTGGTCATTTAAAGTTT+AGG - Chr1:85714559-85714578 MsG0180005018.01.T01:CDS 30.0%
! ATGAAATTTTCGGAGATGTA+TGG - Chr1:85716889-85716908 MsG0180005018.01.T01:five_prime_UTR 30.0%
! ATTGGTTCATTCATAACTCT+GGG - Chr1:85715947-85715966 MsG0180005018.01.T01:intron 30.0%
! CAAAGAAATTGAAGTACCAT+TGG - Chr1:85715693-85715712 MsG0180005018.01.T01:intron 30.0%
! CCTTTATCATTGACTATGAT+GGG - Chr1:85715400-85715419 MsG0180005018.01.T01:intron 30.0%
! CTCTCTAAATAATCGATTCA+AGG - Chr1:85716399-85716418 MsG0180005018.01.T01:intron 30.0%
! TCAATGGGTTTAAGAGAAAA+AGG + Chr1:85713133-85713152 None:intergenic 30.0%
! TCCTTTATCATTGACTATGA+TGG - Chr1:85715399-85715418 MsG0180005018.01.T01:intron 30.0%
! TGGTCTATTGGAATTTTCTA+TGG - Chr1:85713098-85713117 MsG0180005018.01.T01:intron 30.0%
! TTTGCTTGTTTCCTTTTCTT+TGG - Chr1:85712981-85713000 MsG0180005018.01.T01:intron 30.0%
! TTTTATCAGAACATGTTTGC+AGG + Chr1:85714612-85714631 None:intergenic 30.0%
!! AATTGCACTGTTTTTCTAGA+AGG - Chr1:85714522-85714541 MsG0180005018.01.T01:CDS 30.0%
!! ATTCAAAACTAGCTTTCAAG+AGG - Chr1:85716651-85716670 MsG0180005018.01.T01:CDS 30.0%
!! CATCCTATTTTGTTTGAGAA+AGG - Chr1:85714406-85714425 MsG0180005018.01.T01:CDS 30.0%
!! TCACTTGGTTGATAAATAAC+TGG - Chr1:85714179-85714198 MsG0180005018.01.T01:CDS 30.0%
!! TGGATTTTGTGTTTGTTACA+TGG - Chr1:85713422-85713441 MsG0180005018.01.T01:intron 30.0%
!!! ATCAATTGGTTTTACTGCTA+AGG - Chr1:85714020-85714039 MsG0180005018.01.T01:intron 30.0%
!!! TATAACCGTTTTTTCTCTTC+TGG - Chr1:85712945-85712964 MsG0180005018.01.T01:intron 30.0%
AAAATATGCACGGACACATA+AGG - Chr1:85716589-85716608 MsG0180005018.01.T01:CDS 35.0%
AACAAAATAGGATGGTCCAA+AGG + Chr1:85714400-85714419 None:intergenic 35.0%
AAGAATTCAATCACCATGCA+AGG - Chr1:85715060-85715079 MsG0180005018.01.T01:intron 35.0%
AAGTTTAGCCGATCGAAAAT+GGG - Chr1:85716912-85716931 MsG0180005018.01.T01:five_prime_UTR 35.0%
AATTGTATGTCCCTCTCAAT+TGG - Chr1:85715929-85715948 MsG0180005018.01.T01:intron 35.0%
ACAAACCACCTTTCACAAAA+TGG - Chr1:85712797-85712816 MsG0180005018.01.T01:CDS 35.0%
AGATATATATGATGCCGGAA+GGG - Chr1:85715283-85715302 MsG0180005018.01.T01:intron 35.0%
AGGATCTGTATTGGAGAATA+AGG - Chr1:85714579-85714598 MsG0180005018.01.T01:CDS 35.0%
AGGCTACAACATGATACTTA+CGG - Chr1:85716609-85716628 MsG0180005018.01.T01:CDS 35.0%
AGTTAGTGATCTAGATTCAG+CGG - Chr1:85716346-85716365 MsG0180005018.01.T01:intron 35.0%
ATAATCTTTGTAGCTGGAGT+TGG - Chr1:85716117-85716136 MsG0180005018.01.T01:CDS 35.0%
CAAACCACCTTTCACAAAAT+GGG - Chr1:85712798-85712817 MsG0180005018.01.T01:CDS 35.0%
CAAAGCACACCAATATACAA+AGG + Chr1:85713627-85713646 None:intergenic 35.0%
CCCATCATAGTCAATGATAA+AGG + Chr1:85715403-85715422 None:intergenic 35.0%
CGAAACCAGAAGAGAAAAAA+CGG + Chr1:85712953-85712972 None:intergenic 35.0%
CGTTCTCTTCAAAAGTAAGA+CGG - Chr1:85716010-85716029 MsG0180005018.01.T01:intron 35.0%
CTTTGTATATTGGTGTGCTT+TGG - Chr1:85713625-85713644 MsG0180005018.01.T01:CDS 35.0%
CTTTGTATTCATCAGCTGTA+AGG + Chr1:85715678-85715697 None:intergenic 35.0%
GAAAGAGATTCATGAACAGA+AGG + Chr1:85713044-85713063 None:intergenic 35.0%
GAAGGAAATCTTTACCGTAT+GGG - Chr1:85715598-85715617 MsG0180005018.01.T01:intron 35.0%
GAATCTAACTTCCTTGTCTT+GGG - Chr1:85715975-85715994 MsG0180005018.01.T01:intron 35.0%
GAATCTAGATCACTAACTTC+CGG + Chr1:85716344-85716363 None:intergenic 35.0%
GACAGTTGATTATGTGAAAC+CGG - Chr1:85716780-85716799 MsG0180005018.01.T01:exon 35.0%
GCATTTGACAGTTCATACAA+CGG + Chr1:85712745-85712764 None:intergenic 35.0%
GCCATTATGCTCAATACATA+AGG + Chr1:85715174-85715193 None:intergenic 35.0%
GGATTAACAGTTATGTACAG+TGG - Chr1:85714543-85714562 MsG0180005018.01.T01:CDS 35.0%
GTGATATGAGTATGAAGTGT+TGG - Chr1:85712892-85712911 MsG0180005018.01.T01:intron 35.0%
GTTGTATGAACTGTCAAATG+CGG - Chr1:85712744-85712763 MsG0180005018.01.T01:CDS 35.0%
TAAAGCATAATGCTTGTGCT+AGG - Chr1:85716079-85716098 MsG0180005018.01.T01:CDS 35.0%
TAGCAATGGATCCAAAGAAA+AGG + Chr1:85712995-85713014 None:intergenic 35.0%
TGTCATCATGACAACCAAAA+GGG + Chr1:85713067-85713086 None:intergenic 35.0%
TTCATTGCCAAGTCAATGTT+TGG - Chr1:85713741-85713760 MsG0180005018.01.T01:CDS 35.0%
TTCCTCCTCTGTACTTTAAT+GGG + Chr1:85716570-85716589 None:intergenic 35.0%
TTGTATGAACTGTCAAATGC+GGG - Chr1:85712745-85712764 MsG0180005018.01.T01:CDS 35.0%
TTGTCATCATGACAACCAAA+AGG + Chr1:85713068-85713087 None:intergenic 35.0%
TTGTTACATGGAAGTGATGA+TGG - Chr1:85713434-85713453 MsG0180005018.01.T01:intron 35.0%
TTTCCTCCTCTGTACTTTAA+TGG + Chr1:85716571-85716590 None:intergenic 35.0%
! AAATAGGGGTTTTTCTTGTG+AGG + Chr1:85715525-85715544 None:intergenic 35.0%
! ACTGCTCGAGTTTTTATCAA+CGG + Chr1:85716430-85716449 None:intergenic 35.0%
! AGTTTCAAAGAGTACGGATA+AGG - Chr1:85715092-85715111 MsG0180005018.01.T01:intron 35.0%
! ATCGACACTTCAAAGTTTTC+CGG - Chr1:85716811-85716830 MsG0180005018.01.T01:five_prime_UTR 35.0%
! ATTTTCACGGAAACAATACC+TGG + Chr1:85715196-85715215 None:intergenic 35.0%
! ATTTTGTGAAAGGTGGTTTG+TGG + Chr1:85712798-85712817 None:intergenic 35.0%
! CAGTCTGATTTTTCTTCCTT+TGG - Chr1:85714381-85714400 MsG0180005018.01.T01:intron 35.0%
! CTGACCCTTTTCTTTTATTC+AGG - Chr1:85713572-85713591 MsG0180005018.01.T01:intron 35.0%
! GTTTCAAAGAGTACGGATAA+GGG - Chr1:85715093-85715112 MsG0180005018.01.T01:intron 35.0%
! TGCTATACTCATGTGCTATT+GGG - Chr1:85715887-85715906 MsG0180005018.01.T01:intron 35.0%
! TTGACTATGATGGGAAGTAT+TGG - Chr1:85715409-85715428 MsG0180005018.01.T01:intron 35.0%
! TTGTTCCTTGTGTACCTTTT+TGG - Chr1:85713676-85713695 MsG0180005018.01.T01:CDS 35.0%
! TTTTCCAATTTCCACTGCAA+AGG + Chr1:85715351-85715370 None:intergenic 35.0%
! TTTTTCTTGTGAGGTTTCCA+TGG + Chr1:85715516-85715535 None:intergenic 35.0%
!! ACTTTTGAAGAGAACGCATT+TGG + Chr1:85716006-85716025 None:intergenic 35.0%
!! ATGTGTTGTGAATTTTGGTG+TGG - Chr1:85713317-85713336 MsG0180005018.01.T01:CDS 35.0%
!! CTCTCTAGGAATTTTGACAA+AGG + Chr1:85712684-85712703 None:intergenic 35.0%
!! TGTGTTGTGAATTTTGGTGT+GGG - Chr1:85713318-85713337 MsG0180005018.01.T01:CDS 35.0%
AAATCTTTACCGTATGGGTC+AGG - Chr1:85715603-85715622 MsG0180005018.01.T01:intron 40.0%
AACTCCAATATCACCTTGCA+TGG + Chr1:85715076-85715095 None:intergenic 40.0%
AAGATGCCAATCCTCATTCA+AGG + Chr1:85715145-85715164 None:intergenic 40.0%
AATGAGGGTTCTTGGTCTAT+TGG - Chr1:85713086-85713105 MsG0180005018.01.T01:intron 40.0%
ACAACATGATACTTACGGTG+CGG - Chr1:85716614-85716633 MsG0180005018.01.T01:CDS 40.0%
ACTAGGAATTGCCTTGAATG+AGG - Chr1:85715131-85715150 MsG0180005018.01.T01:intron 40.0%
AGTAGCTCTTAGCATCACTA+AGG - Chr1:85714783-85714802 MsG0180005018.01.T01:intron 40.0%
AGTTTAGCCGATCGAAAATG+GGG - Chr1:85716913-85716932 MsG0180005018.01.T01:five_prime_UTR 40.0%
ATCACCATGCAAGGTGATAT+TGG - Chr1:85715069-85715088 MsG0180005018.01.T01:intron 40.0%
ATCTTACCTCGGAGAAATGT+TGG + Chr1:85716060-85716079 None:intergenic 40.0%
ATGATGACAATGAGGGTTCT+TGG - Chr1:85713078-85713097 MsG0180005018.01.T01:intron 40.0%
ATGTATTGAGCATAATGGCC+AGG - Chr1:85715175-85715194 MsG0180005018.01.T01:intron 40.0%
CAAATGCTAGTTCATCGTCA+AGG - Chr1:85716758-85716777 MsG0180005018.01.T01:CDS 40.0%
CAGAGAAACAGTAGAACACT+TGG - Chr1:85714219-85714238 MsG0180005018.01.T01:CDS 40.0%
CAGAGGAGGAAAAATATGCA+CGG - Chr1:85716579-85716598 MsG0180005018.01.T01:CDS 40.0%
CAGATATATATGATGCCGGA+AGG - Chr1:85715282-85715301 MsG0180005018.01.T01:intron 40.0%
CGAAGGAAATCTTTACCGTA+TGG - Chr1:85715597-85715616 MsG0180005018.01.T01:intron 40.0%
CTGCTATACTCATGTGCTAT+TGG - Chr1:85715886-85715905 MsG0180005018.01.T01:intron 40.0%
CTTTCCTTTGCAGTGGAAAT+TGG - Chr1:85715344-85715363 MsG0180005018.01.T01:intron 40.0%
GAAGTTTAGCCGATCGAAAA+TGG - Chr1:85716911-85716930 MsG0180005018.01.T01:five_prime_UTR 40.0%
GAATTGCCTTGAATGAGGAT+TGG - Chr1:85715136-85715155 MsG0180005018.01.T01:intron 40.0%
GAGGATAGAATCCAACAATC+CGG + Chr1:85716531-85716550 None:intergenic 40.0%
GGAATCTAACTTCCTTGTCT+TGG - Chr1:85715974-85715993 MsG0180005018.01.T01:intron 40.0%
GGATTGTTGGATTCTATCCT+CGG - Chr1:85716530-85716549 MsG0180005018.01.T01:CDS 40.0%
GGGTCAGCAACAAAATTACT+TGG + Chr1:85713559-85713578 None:intergenic 40.0%
GGTTGTCATGATGACAATGA+GGG - Chr1:85713071-85713090 MsG0180005018.01.T01:intron 40.0%
GTCATCATGACAACCAAAAG+GGG + Chr1:85713066-85713085 None:intergenic 40.0%
TCTTACCTCGGAGAAATGTT+GGG + Chr1:85716059-85716078 None:intergenic 40.0%
TGGTTGTCATGATGACAATG+AGG - Chr1:85713070-85713089 MsG0180005018.01.T01:intron 40.0%
TTGATTATGTGAAACCGGCT+TGG - Chr1:85716785-85716804 MsG0180005018.01.T01:exon 40.0%
TTTGACTCAACAAAGCCCAA+TGG + Chr1:85715712-85715731 None:intergenic 40.0%
! ACCTTTCACAAAATGGGTTC+CGG - Chr1:85712804-85712823 MsG0180005018.01.T01:CDS 40.0%
! AGATGAAAGTTTATGGTGGG+TGG - Chr1:85713901-85713920 MsG0180005018.01.T01:CDS 40.0%
! ATTTGGTCTTTCCCAAGACA+AGG + Chr1:85715989-85716008 None:intergenic 40.0%
! CATACATCTTCAAGTTCCAC+AGG + Chr1:85716256-85716275 None:intergenic 40.0%
! CATGAATCTCTTTCCCCTTT+TGG - Chr1:85713050-85713069 MsG0180005018.01.T01:intron 40.0%
! CTGCTCGAGTTTTTATCAAC+GGG + Chr1:85716429-85716448 None:intergenic 40.0%
! GGTGTATCCAAACATTGACT+TGG + Chr1:85713751-85713770 None:intergenic 40.0%
! TCATTCATAACTCTGGGAAG+AGG - Chr1:85715953-85715972 MsG0180005018.01.T01:intron 40.0%
! TGATTATGTGAAACCGGCTT+GGG - Chr1:85716786-85716805 MsG0180005018.01.T01:exon 40.0%
!! AACTAGCTTTCAAGAGGTAC+TGG - Chr1:85716657-85716676 MsG0180005018.01.T01:CDS 40.0%
!! ACTAGCTTTCAAGAGGTACT+GGG - Chr1:85716658-85716677 MsG0180005018.01.T01:CDS 40.0%
!! GATGAAAGTTTATGGTGGGT+GGG - Chr1:85713902-85713921 MsG0180005018.01.T01:CDS 40.0%
!! GGTTTTGGCACCAAGAAAAA+CGG - Chr1:85715453-85715472 MsG0180005018.01.T01:intron 40.0%
!! GTTGGATTGGTGTTATGGAT+GGG - Chr1:85715800-85715819 MsG0180005018.01.T01:intron 40.0%
!! GTTTTGGCACCAAGAAAAAC+GGG - Chr1:85715454-85715473 MsG0180005018.01.T01:intron 40.0%
!! TGAGTATGAAGTGTTGGTGT+AGG - Chr1:85712898-85712917 MsG0180005018.01.T01:intron 40.0%
!! TGCGAGTATTGACCTTTCAA+TGG + Chr1:85716200-85716219 None:intergenic 40.0%
!! TTATGATTTGGTTTGAGGGG+TGG - Chr1:85713402-85713421 MsG0180005018.01.T01:CDS 40.0%
!! TTGAGCGAGGTTTTAATGTC+TGG - Chr1:85716491-85716510 MsG0180005018.01.T01:CDS 40.0%
!! TTGGATTGGTGTTATGGATG+GGG - Chr1:85715801-85715820 MsG0180005018.01.T01:intron 40.0%
!!! GAAGTATTGGCTTTTTGGCT+CGG - Chr1:85715422-85715441 MsG0180005018.01.T01:intron 40.0%
!!! GATGGGAAGTATTGGCTTTT+TGG - Chr1:85715417-85715436 MsG0180005018.01.T01:intron 40.0%
!!! GTTTTTGAGTCTCTCTCTCT+AGG + Chr1:85712698-85712717 None:intergenic 40.0%
AAAACGGGCAGTTGGAGATT+TGG - Chr1:85715469-85715488 MsG0180005018.01.T01:intron 45.0%
AGCATAATGCTTGTGCTAGG+AGG - Chr1:85716082-85716101 MsG0180005018.01.T01:CDS 45.0%
AGCCCATTAAAGTACAGAGG+AGG - Chr1:85716565-85716584 MsG0180005018.01.T01:CDS 45.0%
AGGACTGTGGTGATACGTAT+GGG - Chr1:85715623-85715642 MsG0180005018.01.T01:intron 45.0%
ATCAGACTGCAGTGCTCAAT+AGG + Chr1:85714370-85714389 None:intergenic 45.0%
ATCGTTGTGGTGTGGAACAA+GGG - Chr1:85716311-85716330 MsG0180005018.01.T01:intron 45.0%
ATGGGTTCCGGTCAGATTAA+CGG - Chr1:85712816-85712835 MsG0180005018.01.T01:CDS 45.0%
CATTGCACTTTCCTTTGCAG+TGG - Chr1:85715337-85715356 MsG0180005018.01.T01:intron 45.0%
CCAACCATAGAAGCTAGCAA+TGG + Chr1:85713009-85713028 None:intergenic 45.0%
CTAGATCACTAACTTCCGGA+GGG + Chr1:85716340-85716359 None:intergenic 45.0%
GAAAATGGGGATTCGACAGT+AGG - Chr1:85716926-85716945 MsG0180005018.01.T01:five_prime_UTR 45.0%
GATAATGCACCTTCGTGTTG+CGG + Chr1:85716849-85716868 None:intergenic 45.0%
GATGTTGGGCATCTAAGTGA+TGG + Chr1:85715768-85715787 None:intergenic 45.0%
GCATAATGCTTGTGCTAGGA+GGG - Chr1:85716083-85716102 MsG0180005018.01.T01:CDS 45.0%
GGCAGGCCATTTAAATACGA+AGG - Chr1:85715580-85715599 MsG0180005018.01.T01:intron 45.0%
GTGATCTAGATTCAGCGGTA+CGG - Chr1:85716351-85716370 MsG0180005018.01.T01:intron 45.0%
TAATGTCGTCATCGAGCTCA+AGG + Chr1:85716453-85716472 None:intergenic 45.0%
TAGAATCCAACAATCCGGTC+AGG + Chr1:85716526-85716545 None:intergenic 45.0%
TAGCACCATTCCACGCATTT+CGG + Chr1:85715741-85715760 None:intergenic 45.0%
TCTAGATCACTAACTTCCGG+AGG + Chr1:85716341-85716360 None:intergenic 45.0%
TGGTACAGCAATTCACCTCT+CGG - Chr1:85715489-85715508 MsG0180005018.01.T01:intron 45.0%
TTCTATCCTCGGCTTATTGC+CGG - Chr1:85716541-85716560 MsG0180005018.01.T01:CDS 45.0%
! ACATGTGATGATGTTGAGCG+AGG - Chr1:85716478-85716497 MsG0180005018.01.T01:CDS 45.0%
! ACCGGAACCCATTTTGTGAA+AGG + Chr1:85712808-85712827 None:intergenic 45.0%
! CCATTGCTAGCTTCTATGGT+TGG - Chr1:85713006-85713025 MsG0180005018.01.T01:intron 45.0%
! GGAACCCATTTTGTGAAAGG+TGG + Chr1:85712805-85712824 None:intergenic 45.0%
! GGATCCATTGCTAGCTTCTA+TGG - Chr1:85713002-85713021 MsG0180005018.01.T01:intron 45.0%
! GTCGAATCCCCATTTTCGAT+CGG + Chr1:85716923-85716942 None:intergenic 45.0%
! TCTCCTCTTTTACTCCCTTC+CGG + Chr1:85715300-85715319 None:intergenic 45.0%
! TGATGGCGCTAAACTTGGAA+GGG + Chr1:85714162-85714181 None:intergenic 45.0%
! TGTATCGAACGATGATAGCG+CGG - Chr1:85713478-85713497 MsG0180005018.01.T01:intron 45.0%
! TTCTGTGTCTGAGATCGTTG+TGG - Chr1:85716298-85716317 MsG0180005018.01.T01:intron 45.0%
! TTGAGGTGTCTTGAGTTCCT+AGG - Chr1:85714943-85714962 MsG0180005018.01.T01:intron 45.0%
!! ACAGGTAAAGAGTATCTCCC+TGG + Chr1:85715029-85715048 None:intergenic 45.0%
!! CTAGCTTTCAAGAGGTACTG+GGG - Chr1:85716659-85716678 MsG0180005018.01.T01:CDS 45.0%
!! GAATTTCTGGCCAGCCAAAA+AGG + Chr1:85713693-85713712 None:intergenic 45.0%
!! GAATTTTGGTGTGGGAGTGT+TGG - Chr1:85713326-85713345 MsG0180005018.01.T01:CDS 45.0%
!! GGTTGGATTGGTGTTATGGA+TGG - Chr1:85715799-85715818 MsG0180005018.01.T01:intron 45.0%
!! GTATGAAGTGTTGGTGTAGG+TGG - Chr1:85712901-85712920 MsG0180005018.01.T01:intron 45.0%
!! TCCTTGTGTACCTTTTTGGC+TGG - Chr1:85713680-85713699 MsG0180005018.01.T01:CDS 45.0%
!! TCTGTACTTTAATGGGCTCC+CGG + Chr1:85716563-85716582 None:intergenic 45.0%
!! TGGTGGTTGGATTGGTGTTA+TGG - Chr1:85715795-85715814 MsG0180005018.01.T01:intron 45.0%
!! TGTGCATCTGTTTCTGATGC+TGG - Chr1:85713530-85713549 MsG0180005018.01.T01:intron 45.0%
!!! CTTTTTGGCTCGGATCATAG+TGG - Chr1:85715432-85715451 MsG0180005018.01.T01:intron 45.0%
AACATCTTCCGTCTGGTGGT+TGG - Chr1:85715782-85715801 MsG0180005018.01.T01:intron 50.0%
AACCACCAGACGGAAGATGT+TGG + Chr1:85715783-85715802 None:intergenic 50.0%
AAGAGCCGAAATGCGTGGAA+TGG - Chr1:85715733-85715752 MsG0180005018.01.T01:intron 50.0%
ACACCAATCCAACCACCAGA+CGG + Chr1:85715793-85715812 None:intergenic 50.0%
ACAGATGCACAAGTCACCAC+AGG + Chr1:85713521-85713540 None:intergenic 50.0%
ACCACCAGACGGAAGATGTT+GGG + Chr1:85715782-85715801 None:intergenic 50.0%
AGAGCCACCGCGTTACAAAT+GGG + Chr1:85712774-85712793 None:intergenic 50.0%
AGAGGAAGCTAAGCAAGGGA+GGG - Chr1:85716682-85716701 MsG0180005018.01.T01:CDS 50.0%
ATGCCGGAAGGGAGTAAAAG+AGG - Chr1:85715294-85715313 MsG0180005018.01.T01:intron 50.0%
CAAACAAGAGCCGAAATGCG+TGG - Chr1:85715728-85715747 MsG0180005018.01.T01:intron 50.0%
CAACATCCTGACCGGATTGT+TGG - Chr1:85716517-85716536 MsG0180005018.01.T01:CDS 50.0%
CACCAAGAAAAACGGGCAGT+TGG - Chr1:85715461-85715480 MsG0180005018.01.T01:intron 50.0%
CAGGACTGTGGTGATACGTA+TGG - Chr1:85715622-85715641 MsG0180005018.01.T01:intron 50.0%
CCAAGTTTAGCGCCATCACT+TGG - Chr1:85714164-85714183 MsG0180005018.01.T01:CDS 50.0%
CGACAGTAGGAGAGATGGTT+GGG - Chr1:85716939-85716958 MsG0180005018.01.T01:five_prime_UTR 50.0%
CTAGATTCAGCGGTACGGTA+AGG - Chr1:85716356-85716375 MsG0180005018.01.T01:intron 50.0%
CTCGGAGAAATGTTGGGACT+CGG + Chr1:85716053-85716072 None:intergenic 50.0%
GATCGTTGTGGTGTGGAACA+AGG - Chr1:85716310-85716329 MsG0180005018.01.T01:intron 50.0%
GGAGTTGGATTGATGTGCGT+AGG - Chr1:85716132-85716151 MsG0180005018.01.T01:CDS 50.0%
GGATTCGACAGTAGGAGAGA+TGG - Chr1:85716934-85716953 MsG0180005018.01.T01:five_prime_UTR 50.0%
GGCGGTTCTCATACCAACAA+CGG - Chr1:85712849-85712868 MsG0180005018.01.T01:intron 50.0%
GGGAGCCCATTAAAGTACAG+AGG - Chr1:85716562-85716581 MsG0180005018.01.T01:CDS 50.0%
GGTTCTCATACCAACAACGG+TGG - Chr1:85712852-85712871 MsG0180005018.01.T01:intron 50.0%
GTACGGATAAGGGAGCAACA+TGG - Chr1:85715103-85715122 MsG0180005018.01.T01:intron 50.0%
GTGGTGATACGTATGGGAGA+CGG - Chr1:85715629-85715648 MsG0180005018.01.T01:intron 50.0%
GTTACTACCACCACCGTTGT+TGG + Chr1:85712865-85712884 None:intergenic 50.0%
TACACCGCCGTTAATCTGAC+CGG + Chr1:85712826-85712845 None:intergenic 50.0%
TACGGTAAGGATCAGGGTAG+AGG - Chr1:85716369-85716388 MsG0180005018.01.T01:intron 50.0%
TCGACAGTAGGAGAGATGGT+TGG - Chr1:85716938-85716957 MsG0180005018.01.T01:five_prime_UTR 50.0%
TCTATCCTCGGCTTATTGCC+GGG - Chr1:85716542-85716561 MsG0180005018.01.T01:CDS 50.0%
TCTCATACCAACAACGGTGG+TGG - Chr1:85712855-85712874 MsG0180005018.01.T01:intron 50.0%
TGGTGATACGTATGGGAGAC+GGG - Chr1:85715630-85715649 MsG0180005018.01.T01:intron 50.0%
! CCAAGTGATGGCGCTAAACT+TGG + Chr1:85714167-85714186 None:intergenic 50.0%
! GCCAGCCAAAAAGGTACACA+AGG + Chr1:85713684-85713703 None:intergenic 50.0%
! GGCTCGGATCATAGTGGTTT+TGG - Chr1:85715438-85715457 MsG0180005018.01.T01:intron 50.0%
! GTGATGGCGCTAAACTTGGA+AGG + Chr1:85714163-85714182 None:intergenic 50.0%
! GTGCTATTGGGTGTGTTGCT+CGG - Chr1:85715899-85715918 MsG0180005018.01.T01:intron 50.0%
! TGTCTGAGATCGTTGTGGTG+TGG - Chr1:85716303-85716322 MsG0180005018.01.T01:intron 50.0%
!! CTCCAACTGCCCGTTTTTCT+TGG + Chr1:85715466-85715485 None:intergenic 50.0%
!! TTATGGTGGGTGGGTTAGTG+AGG - Chr1:85713911-85713930 MsG0180005018.01.T01:CDS 50.0%
!! TTTCAAGAGGTACTGGGGAG+AGG - Chr1:85716664-85716683 MsG0180005018.01.T01:CDS 50.0%
AAGAGCTTGGGAGCTCGCAA+TGG - Chr1:85715556-85715575 MsG0180005018.01.T01:intron 55.0%
AGCTAAGCAAGGGAGGGAAG+TGG - Chr1:85716688-85716707 MsG0180005018.01.T01:CDS 55.0%
CACAACCAACCATGAACCGC+GGG + Chr1:85715851-85715870 None:intergenic 55.0%
CACCACAGTCCTGACCCATA+CGG + Chr1:85715615-85715634 None:intergenic 55.0%
CAGAGCCACCGCGTTACAAA+TGG + Chr1:85712775-85712794 None:intergenic 55.0%
CAGATTAACGGCGGTGTAGG+CGG - Chr1:85712828-85712847 MsG0180005018.01.T01:intron 55.0%
CAGCGGTACGGTAAGGATCA+GGG - Chr1:85716363-85716382 MsG0180005018.01.T01:intron 55.0%
CGAGTCCCAACATTTCTCCG+AGG - Chr1:85716051-85716070 MsG0180005018.01.T01:CDS 55.0%
CTTCCGTCTGGTGGTTGGAT+TGG - Chr1:85715787-85715806 MsG0180005018.01.T01:intron 55.0%
GAGAGGAAGCTAAGCAAGGG+AGG - Chr1:85716681-85716700 MsG0180005018.01.T01:CDS 55.0%
GATGCCCAACATCTTCCGTC+TGG - Chr1:85715775-85715794 MsG0180005018.01.T01:intron 55.0%
GATGGGGATCGTGTTCCTTC+TGG - Chr1:85715817-85715836 MsG0180005018.01.T01:intron 55.0%
GCAATTCACCTCTCGGTCCA+TGG - Chr1:85715496-85715515 MsG0180005018.01.T01:intron 55.0%
GCACAACCAACCATGAACCG+CGG + Chr1:85715852-85715871 None:intergenic 55.0%
GGAGCAACATGGCAGCAACT+AGG - Chr1:85715114-85715133 MsG0180005018.01.T01:intron 55.0%
GGGGAGAGGAAGCTAAGCAA+GGG - Chr1:85716678-85716697 MsG0180005018.01.T01:CDS 55.0%
GGTCAGATTAACGGCGGTGT+AGG - Chr1:85712825-85712844 MsG0180005018.01.T01:intron 55.0%
GGTTCCGGTCAGATTAACGG+CGG - Chr1:85712819-85712838 MsG0180005018.01.T01:CDS 55.0%
GTCACCACAGGATTCGCTAC+CGG + Chr1:85713509-85713528 None:intergenic 55.0%
GTGGAACAAGGGAATCCCTC+CGG - Chr1:85716322-85716341 MsG0180005018.01.T01:intron 55.0%
TAAGCAAGGGAGGGAAGTGG+TGG - Chr1:85716691-85716710 MsG0180005018.01.T01:CDS 55.0%
TACCGTATGGGTCAGGACTG+TGG - Chr1:85715610-85715629 MsG0180005018.01.T01:intron 55.0%
TCAGCGGTACGGTAAGGATC+AGG - Chr1:85716362-85716381 MsG0180005018.01.T01:intron 55.0%
TCTGGCGTCAACATCCTGAC+CGG - Chr1:85716509-85716528 MsG0180005018.01.T01:CDS 55.0%
TGAGGTTTCCATGGACCGAG+AGG + Chr1:85715507-85715526 None:intergenic 55.0%
TGGGGAGAGGAAGCTAAGCA+AGG - Chr1:85716677-85716696 MsG0180005018.01.T01:CDS 55.0%
! AGCGATTAGCCGCAACACGA+AGG - Chr1:85716837-85716856 MsG0180005018.01.T01:five_prime_UTR 55.0%
! ATGTTGGGACTCGGTTCACG+CGG + Chr1:85716044-85716063 None:intergenic 55.0%
!! GAAGTGTCGATAGCCCAAGC+CGG + Chr1:85716802-85716821 None:intergenic 55.0%
AGCTTGGGAGCTCGCAATGG+AGG - Chr1:85715559-85715578 MsG0180005018.01.T01:intron 60.0%
ATTAACGGCGGTGTAGGCGG+CGG - Chr1:85712831-85712850 MsG0180005018.01.T01:intron 60.0%
CGGGCGACCCATTTGTAACG+CGG - Chr1:85712764-85712783 MsG0180005018.01.T01:CDS 60.0%
CTCATCCCGCGGTTCATGGT+TGG - Chr1:85715843-85715862 MsG0180005018.01.T01:intron 60.0%
GAGACTCATCCCGCGGTTCA+TGG - Chr1:85715839-85715858 MsG0180005018.01.T01:intron 60.0%
GCCCAACATCTTCCGTCTGG+TGG - Chr1:85715778-85715797 MsG0180005018.01.T01:intron 60.0%
GCGACCCATTTGTAACGCGG+TGG - Chr1:85712767-85712786 MsG0180005018.01.T01:CDS 60.0%
GTTGCGGCTAATCGCTGCAC+CGG + Chr1:85716833-85716852 None:intergenic 60.0%
TGACCTACGATGCTCGCCTG+TGG - Chr1:85716237-85716256 MsG0180005018.01.T01:intron 60.0%
TTGGCCGGTAGCGAATCCTG+TGG - Chr1:85713502-85713521 MsG0180005018.01.T01:intron 60.0%
! CCTTCTGGAGACTCATCCCG+CGG - Chr1:85715832-85715851 MsG0180005018.01.T01:intron 60.0%
! CGAACGATGATAGCGCGGCT+TGG - Chr1:85713483-85713502 MsG0180005018.01.T01:intron 60.0%
! GTTCCACAGGCGAGCATCGT+AGG + Chr1:85716243-85716262 None:intergenic 60.0%
! TGTTGGGACTCGGTTCACGC+GGG + Chr1:85716043-85716062 None:intergenic 60.0%
CCGCGGGATGAGTCTCCAGA+AGG + Chr1:85715835-85715854 None:intergenic 65.0%
TGGGAGCTCGCAATGGAGGC+AGG - Chr1:85715563-85715582 MsG0180005018.01.T01:intron 65.0%
! CGATGATAGCGCGGCTTGGC+CGG - Chr1:85713487-85713506 MsG0180005018.01.T01:intron 65.0%
GGGCTCCCGGCAATAAGCCG+AGG + Chr1:85716550-85716569 None:intergenic 70.0%
Chromosome Type Strat End Strand Name
Chr1 gene 85712639 85716969 85712639 ID=MsG0180005018.01;Name=MsG0180005018.01
Chr1 mRNA 85712639 85716969 85712639 ID=MsG0180005018.01.T01;Parent=MsG0180005018.01;Name=MsG0180005018.01.T01;_AED=0.30;_eAED=0.32;_QI=177|0|0.14|1|0.66|0.85|7|0|585
Chr1 exon 85712639 85712840 85712639 ID=MsG0180005018.01.T01:exon:9734;Parent=MsG0180005018.01.T01
Chr1 exon 85713236 85713421 85713236 ID=MsG0180005018.01.T01:exon:9733;Parent=MsG0180005018.01.T01
Chr1 exon 85713577 85714023 85713577 ID=MsG0180005018.01.T01:exon:9732;Parent=MsG0180005018.01.T01
Chr1 exon 85714118 85714323 85714118 ID=MsG0180005018.01.T01:exon:9731;Parent=MsG0180005018.01.T01
Chr1 exon 85714390 85714615 85714390 ID=MsG0180005018.01.T01:exon:9730;Parent=MsG0180005018.01.T01
Chr1 exon 85716011 85716160 85716011 ID=MsG0180005018.01.T01:exon:9729;Parent=MsG0180005018.01.T01
Chr1 exon 85716452 85716969 85716452 ID=MsG0180005018.01.T01:exon:9728;Parent=MsG0180005018.01.T01
Chr1 five_prime_UTR 85716793 85716969 85716793 ID=MsG0180005018.01.T01:five_prime_utr;Parent=MsG0180005018.01.T01
Chr1 CDS 85716452 85716792 85716452 ID=MsG0180005018.01.T01:cds;Parent=MsG0180005018.01.T01
Chr1 CDS 85716011 85716160 85716011 ID=MsG0180005018.01.T01:cds;Parent=MsG0180005018.01.T01
Chr1 CDS 85714390 85714615 85714390 ID=MsG0180005018.01.T01:cds;Parent=MsG0180005018.01.T01
Chr1 CDS 85714118 85714323 85714118 ID=MsG0180005018.01.T01:cds;Parent=MsG0180005018.01.T01
Chr1 CDS 85713577 85714023 85713577 ID=MsG0180005018.01.T01:cds;Parent=MsG0180005018.01.T01
Chr1 CDS 85713236 85713421 85713236 ID=MsG0180005018.01.T01:cds;Parent=MsG0180005018.01.T01
Chr1 CDS 85712639 85712840 85712639 ID=MsG0180005018.01.T01:cds;Parent=MsG0180005018.01.T01
Gene Sequence

>MsG0180005018.01.T01

ATGGGTTCCGGTCAGATTAACGGCGGTGTAGGCGGCGGTTCTCATACCAACAACGGTGGTGGTAGTAACAGTTGTTGTGATATGAGTATGAAGTGTTGGTGTAGGTGGAGATTAGAAAATCAACACTACTATAACCGTTTTTTCTCTTCTGGTTTCGTTTTCTTCTTTGCTTGTTTCCTTTTCTTTGGATCCATTGCTAGCTTCTATGGTTGGCTTTCTTTTTCTCCTTCTGTTCATGAATCTCTTTCCCCTTTTGGTTGTCATGATGACAATGAGGGTTCTTGGTCTATTGGAATTTTCTATGGTGTGATTCTCCTTTTTCTCTTAAACCCATTGAATTTTGATGATGGTGTTGATTGTGTGCAGTCGAATGTATCGAACGATGATAGCGCGGCTTGGCCGGTAGCGAATCCTGTGGTGACTTGTGCATCTGTTTCTGATGCTGGTTTCCAAGTAATTTTGTTGCTGACCCTTTTCTTTTATTCAGGTAATATCGACCTGTTCACTCATATTGACATTACAATCCAGGGAGATACTCTTTACCTGTTCTATGAGACAAAGAATTCAATCACCATGCAAGGTGATATTGGAGTTTCAAAGAGTACGGATAAGGGAGCAACATGGCAGCAACTAGGAATTGCCTTGAATGAGGATTGGCATCTTTCTTATCCTTATGTATTGAGCATAATGGCCAGGTATTGTTTCCGTGAAAATAAAATATATATGATGCCGGAAGGGAGTAAAAGAGGAGATCTTCGTCTGTACAGAGCATTGCACTTTCCTTTGCAGTGGAAATTGGAAAAAGTTCTCATAGAAAAGCCCCTTATTGATTCCTTTATCATTGACTATGATGGGAAGTATTGGCTTTTTGGCTCGGATCATAGTGGTTTTGGCACCAAGAAAAACGGGCAGTTGGAGATTTGGCCATTTAAATACGAAGGAAATCTTTACCGTATGGGTCAGGACTGTGGTGATACGTATGGGAGACGGGTGCGTGCTTTTCAGATAGAAACCCTTACAGCTGATGAATACAAAGAAATTGAAGTACCATTGGGCTTTGTTGAGTCAAACAAGAGCCGAAATGCGTGGAATGGTGCTAGATACCATCACTTAGATGCCCAACATCTTCCGTCTGGTGGTTGGATTGGTGTTATGGATGGGGATCGTGTTCCTTCTGGAGACTCATCCCGCGGTTCATGGTTGGTTGTGCTTCTGTTGCAGTCGCTGCTATACTCATGTGCTATTGGGTGTGTTGCTCGGTTTTGTGAATTGTATGTCCCTCTCAATTGGTTCATTCATAACTCTGGGAAGAGGAATCTAACTTCCTTGTCTTGGGAAAGACCAAATGCGTTCTCTTCAAAAGTAAGACGAAGAACTTATCCATTGAAAGGTCAATACTCGCAGTTCACGTTATTGACAATGACCTACGATGCTCGCCTGTGGAACTTGAAGATGTATGTGAAACATTACTCGAGATGCTCTTCTGTGTCTGAGATCGTTGTGGTGTGGAACAAGGGAATCCCTCCGGAAGTTAGTGATCTAGATTCAGCGGTACGTTCATCGTCAAGGACAGTTGATTATGTGAAACCGGCTTGGGCTATCGACACTTCAAAGTTTTCCGGTGCAGCGATTAGCCGCAACACGAAGGTGCATTATCAATTGAGAAGCAATTGTCTAATGAAATTTTCGGAGATGTATGGAAGTTTAGCCGATCGAAAATGGGGATTCGACAGTAGGAGAGATGGTTGGGATGTATAG
Protein sequence

>MsG0180005018.01.T01

MGSGQINGGVGGGSHTNNGGGSNSCCDMSMKCWCRWRLENQHYYNRFFSSGFVFFFACFLFFGSIASFYGWLSFSPSVHESLSPFGCHDDNEGSWSIGIFYGVILLFLLNPLNFDDGVDCVQSNVSNDDSAAWPVANPVVTCASVSDAGFQVILLLTLFFYSGNIDLFTHIDITIQGDTLYLFYETKNSITMQGDIGVSKSTDKGATWQQLGIALNEDWHLSYPYVLSIMARYCFRENKIYMMPEGSKRGDLRLYRALHFPLQWKLEKVLIEKPLIDSFIIDYDGKYWLFGSDHSGFGTKKNGQLEIWPFKYEGNLYRMGQDCGDTYGRRVRAFQIETLTADEYKEIEVPLGFVESNKSRNAWNGARYHHLDAQHLPSGGWIGVMDGDRVPSGDSSRGSWLVVLLLQSLLYSCAIGCVARFCELYVPLNWFIHNSGKRNLTSLSWERPNAFSSKVRRRTYPLKGQYSQFTLLTMTYDARLWNLKMYVKHYSRCSSVSEIVVVWNKGIPPEVSDLDSAVRSSSRTVDYVKPAWAIDTSKFSGAAISRNTKVHYQLRSNCLMKFSEMYGSLADRKWGFDSRRDGWDV*