Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0180005078.01.T01 | RHN66613.1 | 81.865 | 193 | 28 | 4 | 1 | 187 | 1 | 192 | 2.58E-97 | 290 |
| MsG0180005078.01.T02 | XP_013459373.3 | 82.778 | 180 | 25 | 3 | 1 | 174 | 1 | 180 | 2.81E-92 | 276 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0180005078.01.T01 | Q9FKK2 | 31.081 | 148 | 93 | 4 | 36 | 177 | 26 | 170 | 8.44E-15 | 73.9 |
| MsG0180005078.01.T02 | Q9FKK2 | 31.081 | 148 | 93 | 4 | 23 | 164 | 26 | 170 | 5.08E-15 | 74.3 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0180005078.01.T01 | A0A396IQ06 | 81.865 | 193 | 28 | 4 | 1 | 187 | 1 | 192 | 1.23e-97 | 290 |
| MsG0180005078.01.T02 | A0A072UUA3 | 82.778 | 180 | 25 | 3 | 1 | 174 | 7 | 186 | 1.38e-92 | 276 |
| Gene ID | Type | Classification |
|---|---|---|
| MsG0180005078.01.T02 | TF | MADS-M-type |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MsG0180005075.01 | MsG0180005078.01 | 0.831409 | 1.697305e-55 | 1.840181e-52 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0180005078.01.T01 | MTR_3g437790 | 83.152 | 184 | 25 | 3 | 10 | 187 | 3 | 186 | 4.07e-99 | 284 |
| MsG0180005078.01.T01 | MTR_2g045020 | 61.081 | 185 | 64 | 6 | 1 | 181 | 1 | 181 | 9.29e-60 | 185 |
| MsG0180005078.01.T01 | MTR_8g022970 | 50.857 | 175 | 73 | 6 | 15 | 180 | 10 | 180 | 2.76e-46 | 150 |
| MsG0180005078.01.T01 | MTR_3g109930 | 51.656 | 151 | 69 | 3 | 31 | 179 | 16 | 164 | 1.62e-44 | 145 |
| MsG0180005078.01.T01 | MTR_2g105290 | 36.196 | 163 | 96 | 3 | 12 | 168 | 1 | 161 | 1.91e-24 | 94.4 |
| MsG0180005078.01.T01 | MTR_7g028448 | 38.060 | 134 | 71 | 3 | 36 | 168 | 31 | 153 | 7.96e-22 | 87.4 |
| MsG0180005078.01.T01 | MTR_4g036915 | 38.060 | 134 | 71 | 3 | 36 | 168 | 31 | 153 | 7.96e-22 | 87.4 |
| MsG0180005078.01.T01 | MTR_8g086290 | 35.065 | 154 | 92 | 3 | 18 | 165 | 7 | 158 | 1.34e-20 | 84.3 |
| MsG0180005078.01.T01 | MTR_5g053390 | 36.774 | 155 | 86 | 4 | 21 | 165 | 7 | 159 | 3.02e-18 | 79.7 |
| MsG0180005078.01.T01 | MTR_4g127140 | 33.803 | 142 | 84 | 3 | 36 | 168 | 31 | 171 | 9.00e-17 | 74.7 |
| MsG0180005078.01.T01 | MTR_8g043650 | 30.909 | 165 | 95 | 4 | 14 | 165 | 1 | 159 | 5.08e-16 | 73.6 |
| MsG0180005078.01.T01 | MTR_1g012570 | 32.298 | 161 | 85 | 5 | 21 | 165 | 7 | 159 | 1.13e-15 | 72.8 |
| MsG0180005078.01.T01 | MTR_3g052920 | 32.278 | 158 | 89 | 3 | 21 | 165 | 7 | 159 | 1.20e-15 | 72.8 |
| MsG0180005078.01.T01 | MTR_1g105920 | 31.646 | 158 | 90 | 4 | 21 | 165 | 7 | 159 | 1.67e-15 | 72.4 |
| MsG0180005078.01.T01 | MTR_1g106070 | 31.013 | 158 | 91 | 3 | 21 | 165 | 7 | 159 | 2.36e-15 | 70.9 |
| MsG0180005078.01.T01 | MTR_3g030770 | 33.125 | 160 | 83 | 5 | 22 | 165 | 8 | 159 | 2.95e-15 | 71.6 |
| MsG0180005078.01.T01 | MTR_1g105910 | 31.013 | 158 | 91 | 3 | 21 | 165 | 7 | 159 | 6.52e-15 | 70.9 |
| MsG0180005078.01.T01 | MTR_2g085280 | 29.375 | 160 | 91 | 4 | 21 | 165 | 7 | 159 | 1.42e-14 | 69.7 |
| MsG0180005078.01.T01 | MTR_2g085250 | 29.375 | 160 | 91 | 4 | 21 | 165 | 7 | 159 | 1.42e-14 | 69.7 |
| MsG0180005078.01.T01 | MTR_3g080940 | 29.861 | 144 | 83 | 3 | 36 | 169 | 28 | 163 | 1.99e-14 | 68.9 |
| MsG0180005078.01.T01 | MTR_2g030740 | 32.298 | 161 | 85 | 5 | 21 | 165 | 7 | 159 | 2.11e-14 | 69.3 |
| MsG0180005078.01.T01 | MTR_1g108510 | 32.500 | 160 | 84 | 5 | 22 | 165 | 8 | 159 | 2.22e-14 | 68.9 |
| MsG0180005078.01.T01 | MTR_1g108580 | 32.500 | 160 | 84 | 5 | 22 | 165 | 8 | 159 | 8.74e-14 | 67.4 |
| MsG0180005078.01.T01 | MTR_5g055100 | 32.895 | 152 | 76 | 6 | 21 | 155 | 7 | 149 | 4.27e-13 | 65.9 |
| MsG0180005078.01.T01 | MTR_8g046350 | 41.096 | 73 | 37 | 1 | 24 | 90 | 3 | 75 | 1.35e-12 | 63.2 |
| MsG0180005078.01.T01 | MTR_1g047550 | 35.577 | 104 | 59 | 2 | 24 | 119 | 3 | 106 | 2.59e-12 | 62.8 |
| MsG0180005078.01.T01 | MTR_8g079502 | 31.818 | 110 | 67 | 2 | 24 | 125 | 3 | 112 | 8.03e-12 | 61.2 |
| MsG0180005078.01.T01 | MTR_3g052870 | 43.056 | 72 | 35 | 1 | 21 | 86 | 7 | 78 | 1.05e-11 | 61.6 |
| MsG0180005078.01.T01 | MTR_0121s0080 | 33.824 | 136 | 78 | 4 | 37 | 165 | 29 | 159 | 1.09e-11 | 62.0 |
| MsG0180005078.01.T01 | MTR_1g105905 | 30.216 | 139 | 79 | 4 | 36 | 164 | 11 | 141 | 1.26e-11 | 61.6 |
| MsG0180005078.01.T01 | MTR_2g093190 | 28.931 | 159 | 91 | 3 | 22 | 165 | 8 | 159 | 2.29e-11 | 60.8 |
| MsG0180005078.01.T01 | MTR_8g051580 | 46.552 | 58 | 31 | 0 | 36 | 93 | 21 | 78 | 2.38e-11 | 60.1 |
| MsG0180005078.01.T01 | MTR_1g077360 | 29.193 | 161 | 90 | 3 | 21 | 165 | 7 | 159 | 2.98e-11 | 60.8 |
| MsG0180005078.01.T01 | MTR_7g062350 | 33.577 | 137 | 79 | 4 | 36 | 165 | 40 | 171 | 5.61e-11 | 60.1 |
| MsG0180005078.01.T01 | MTR_1g063160 | 42.647 | 68 | 33 | 1 | 24 | 85 | 3 | 70 | 7.54e-11 | 58.5 |
| MsG0180005078.01.T02 | MTR_3g437790 | 82.778 | 180 | 25 | 3 | 1 | 174 | 7 | 186 | 3.51e-96 | 276 |
| MsG0180005078.01.T02 | MTR_2g045020 | 63.473 | 167 | 53 | 6 | 6 | 168 | 19 | 181 | 2.92e-55 | 173 |
| MsG0180005078.01.T02 | MTR_8g022970 | 50.857 | 175 | 73 | 6 | 2 | 167 | 10 | 180 | 2.05e-46 | 150 |
| MsG0180005078.01.T02 | MTR_3g109930 | 49.375 | 160 | 77 | 3 | 9 | 166 | 7 | 164 | 1.00e-44 | 145 |
| MsG0180005078.01.T02 | MTR_2g105290 | 36.646 | 161 | 94 | 3 | 1 | 155 | 3 | 161 | 1.19e-24 | 94.7 |
| MsG0180005078.01.T02 | MTR_7g028448 | 38.060 | 134 | 71 | 3 | 23 | 155 | 31 | 153 | 4.73e-22 | 87.8 |
| MsG0180005078.01.T02 | MTR_4g036915 | 38.060 | 134 | 71 | 3 | 23 | 155 | 31 | 153 | 4.73e-22 | 87.8 |
| MsG0180005078.01.T02 | MTR_8g086290 | 35.065 | 154 | 92 | 3 | 5 | 152 | 7 | 158 | 1.04e-20 | 84.3 |
| MsG0180005078.01.T02 | MTR_5g053390 | 36.774 | 155 | 86 | 4 | 8 | 152 | 7 | 159 | 2.28e-18 | 79.7 |
| MsG0180005078.01.T02 | MTR_4g127140 | 33.803 | 142 | 84 | 3 | 23 | 155 | 31 | 171 | 6.05e-17 | 74.7 |
| MsG0180005078.01.T02 | MTR_8g043650 | 30.909 | 165 | 95 | 4 | 1 | 152 | 1 | 159 | 3.75e-16 | 73.6 |
| MsG0180005078.01.T02 | MTR_3g052920 | 32.121 | 165 | 93 | 4 | 1 | 152 | 1 | 159 | 8.82e-16 | 72.8 |
| MsG0180005078.01.T02 | MTR_1g012570 | 32.298 | 161 | 85 | 5 | 8 | 152 | 7 | 159 | 1.04e-15 | 72.4 |
| MsG0180005078.01.T02 | MTR_1g106070 | 30.909 | 165 | 95 | 4 | 1 | 152 | 1 | 159 | 1.48e-15 | 70.9 |
| MsG0180005078.01.T02 | MTR_1g105920 | 31.646 | 158 | 90 | 4 | 8 | 152 | 7 | 159 | 1.54e-15 | 72.0 |
| MsG0180005078.01.T02 | MTR_3g030770 | 33.125 | 160 | 83 | 5 | 9 | 152 | 8 | 159 | 1.92e-15 | 71.6 |
| MsG0180005078.01.T02 | MTR_1g105910 | 31.013 | 158 | 91 | 3 | 8 | 152 | 7 | 159 | 4.93e-15 | 70.5 |
| MsG0180005078.01.T02 | MTR_2g085250 | 29.375 | 160 | 91 | 4 | 8 | 152 | 7 | 159 | 8.93e-15 | 70.1 |
| MsG0180005078.01.T02 | MTR_2g085280 | 29.375 | 160 | 91 | 4 | 8 | 152 | 7 | 159 | 9.21e-15 | 70.1 |
| MsG0180005078.01.T02 | MTR_3g080940 | 29.861 | 144 | 83 | 3 | 23 | 156 | 28 | 163 | 1.56e-14 | 68.9 |
| MsG0180005078.01.T02 | MTR_1g108510 | 32.500 | 160 | 84 | 5 | 9 | 152 | 8 | 159 | 1.76e-14 | 68.9 |
| MsG0180005078.01.T02 | MTR_2g030740 | 32.298 | 161 | 85 | 5 | 8 | 152 | 7 | 159 | 2.25e-14 | 68.9 |
| MsG0180005078.01.T02 | MTR_1g108580 | 32.500 | 160 | 84 | 5 | 9 | 152 | 8 | 159 | 6.88e-14 | 67.4 |
| MsG0180005078.01.T02 | MTR_5g055100 | 32.895 | 152 | 76 | 6 | 8 | 142 | 7 | 149 | 3.12e-13 | 65.9 |
| MsG0180005078.01.T02 | MTR_8g046350 | 41.096 | 73 | 37 | 1 | 11 | 77 | 3 | 75 | 9.33e-13 | 63.2 |
| MsG0180005078.01.T02 | MTR_1g047550 | 37.209 | 86 | 52 | 1 | 23 | 106 | 21 | 106 | 1.75e-12 | 62.8 |
| MsG0180005078.01.T02 | MTR_8g079502 | 31.532 | 111 | 68 | 2 | 11 | 113 | 3 | 113 | 5.46e-12 | 61.6 |
| MsG0180005078.01.T02 | MTR_0121s0080 | 33.824 | 136 | 78 | 4 | 24 | 152 | 29 | 159 | 6.38e-12 | 62.0 |
| MsG0180005078.01.T02 | MTR_3g052870 | 43.056 | 72 | 35 | 1 | 8 | 73 | 7 | 78 | 8.18e-12 | 61.6 |
| MsG0180005078.01.T02 | MTR_1g105905 | 30.216 | 139 | 79 | 4 | 23 | 151 | 11 | 141 | 9.67e-12 | 61.6 |
| MsG0180005078.01.T02 | MTR_2g093190 | 30.573 | 157 | 91 | 4 | 9 | 152 | 8 | 159 | 1.37e-11 | 61.2 |
| MsG0180005078.01.T02 | MTR_8g051580 | 46.552 | 58 | 31 | 0 | 23 | 80 | 21 | 78 | 1.66e-11 | 60.1 |
| MsG0180005078.01.T02 | MTR_1g077360 | 29.193 | 161 | 90 | 3 | 8 | 152 | 7 | 159 | 2.25e-11 | 60.8 |
| MsG0180005078.01.T02 | MTR_7g062350 | 33.577 | 137 | 79 | 4 | 23 | 152 | 40 | 171 | 3.11e-11 | 60.5 |
| MsG0180005078.01.T02 | MTR_1g063160 | 42.647 | 68 | 33 | 1 | 11 | 72 | 3 | 70 | 5.94e-11 | 58.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0180005078.01.T01 | AT2G24840 | 28.090 | 178 | 106 | 5 | 8 | 175 | 63 | 228 | 7.87e-16 | 73.6 |
| MsG0180005078.01.T01 | AT5G60440 | 31.081 | 148 | 93 | 4 | 36 | 177 | 26 | 170 | 8.60e-16 | 73.9 |
| MsG0180005078.01.T01 | AT3G66656 | 53.061 | 49 | 23 | 0 | 36 | 84 | 21 | 69 | 7.88e-13 | 63.9 |
| MsG0180005078.01.T01 | AT1G65360 | 30.345 | 145 | 82 | 5 | 21 | 152 | 5 | 143 | 4.22e-12 | 62.8 |
| MsG0180005078.01.T01 | AT4G36590 | 28.571 | 161 | 97 | 5 | 21 | 165 | 5 | 163 | 1.91e-11 | 61.2 |
| MsG0180005078.01.T01 | AT2G34440 | 29.508 | 122 | 80 | 2 | 36 | 154 | 21 | 139 | 3.59e-11 | 59.3 |
| MsG0180005078.01.T02 | AT5G60440 | 31.081 | 148 | 93 | 4 | 23 | 164 | 26 | 170 | 5.18e-16 | 74.3 |
| MsG0180005078.01.T02 | AT2G24840 | 29.299 | 157 | 101 | 4 | 16 | 162 | 72 | 228 | 1.43e-15 | 72.4 |
| MsG0180005078.01.T02 | AT3G66656 | 53.061 | 49 | 23 | 0 | 23 | 71 | 21 | 69 | 6.45e-13 | 63.9 |
| MsG0180005078.01.T02 | AT1G65360 | 30.345 | 145 | 82 | 5 | 8 | 139 | 5 | 143 | 3.71e-12 | 62.8 |
| MsG0180005078.01.T02 | AT4G36590 | 28.571 | 161 | 97 | 5 | 8 | 152 | 5 | 163 | 1.23e-11 | 61.6 |
| MsG0180005078.01.T02 | AT2G34440 | 29.508 | 122 | 80 | 2 | 23 | 141 | 21 | 139 | 2.88e-11 | 59.3 |
Find 25 sgRNAs with CRISPR-Local
Find 30 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TAACACACATTCTCTTGAAT+TGG | 0.284587 | 1:+86587800 | None:intergenic |
| GAATAAATCTATTGATGATA+TGG | 0.314688 | 1:-86587915 | MsG0180005078.01.T01:CDS |
| TGAATGACAACGTCATAGTT+AGG | 0.360102 | 1:+86588118 | None:intergenic |
| TCGCTTCATATCGAAGCCTT+AGG | 0.376463 | 1:+86588026 | None:intergenic |
| TTGTTTCTCTCGGCCGCCAT+TGG | 0.404729 | 1:+86588304 | None:intergenic |
| CTTCCGTGTGTTGTTTCTCT+CGG | 0.413838 | 1:+86588294 | None:intergenic |
| CCCTTCTCGAAACTCAAACT+TGG | 0.418484 | 1:-86588238 | MsG0180005078.01.T01:CDS |
| CGCTTCATATCGAAGCCTTA+GGG | 0.430275 | 1:+86588027 | None:intergenic |
| CTCATCCTCGTCCATATGTC+CGG | 0.445428 | 1:+86588084 | None:intergenic |
| CTTCTTCGCTTCGCTTGCTA+CGG | 0.451335 | 1:+86587835 | None:intergenic |
| GAAGGATGAAATCAAGAAAG+AGG | 0.477445 | 1:-86588266 | MsG0180005078.01.T01:CDS |
| GATTTATTCCACCAATCAGC+AGG | 0.485193 | 1:+86587929 | None:intergenic |
| CTTCGATATGAAGCGATTCA+AGG | 0.502715 | 1:-86588019 | MsG0180005078.01.T01:CDS |
| CATGCATAGAACTTGTTGTT+GGG | 0.522753 | 1:+86588148 | None:intergenic |
| AGGAAAACTTAAAGAAGAGA+AGG | 0.524858 | 1:-86587999 | MsG0180005078.01.T01:CDS |
| CAACACACGGAAGAGAAAGA+AGG | 0.527351 | 1:-86588284 | MsG0180005078.01.T01:CDS |
| CCAAGTTTGAGTTTCGAGAA+GGG | 0.530556 | 1:+86588238 | None:intergenic |
| GAATGACAACGTCATAGTTA+GGG | 0.531829 | 1:+86588119 | None:intergenic |
| TTGATTTGCCTGCTGATTGG+TGG | 0.538450 | 1:-86587937 | MsG0180005078.01.T01:CDS |
| TCCAAGTTTGAGTTTCGAGA+AGG | 0.565563 | 1:+86588237 | None:intergenic |
| ATGATGTTGTTGAAACCCTA+AGG | 0.589934 | 1:-86588042 | MsG0180005078.01.T01:CDS |
| ACATGCATAGAACTTGTTGT+TGG | 0.594378 | 1:+86588147 | None:intergenic |
| AACAACAAGTTCTATGCATG+TGG | 0.619639 | 1:-86588145 | MsG0180005078.01.T01:CDS |
| CGGCCGAGAGAAACAACACA+CGG | 0.685523 | 1:-86588297 | MsG0180005078.01.T01:CDS |
| TCTGACCGGACATATGGACG+AGG | 0.696130 | 1:-86588089 | MsG0180005078.01.T01:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | GAATAAATCTATTGATGATA+TGG | - | Chr1:86588224-86588243 | MsG0180005078.01.T01:CDS | 20.0% |
| ! | GTCTAAGAAAAAAATTCCAA+TGG | - | Chr1:86587819-86587838 | MsG0180005078.01.T01:CDS | 25.0% |
| ! | TAAGAAAAAAATTCCAATGG+CGG | - | Chr1:86587822-86587841 | MsG0180005078.01.T01:CDS | 25.0% |
| AGGAAAACTTAAAGAAGAGA+AGG | - | Chr1:86588140-86588159 | MsG0180005078.01.T01:CDS | 30.0% | |
| TAACACACATTCTCTTGAAT+TGG | + | Chr1:86588342-86588361 | None:intergenic | 30.0% | |
| AACAACAAGTTCTATGCATG+TGG | - | Chr1:86587994-86588013 | MsG0180005078.01.T01:CDS | 35.0% | |
| ATGATGTTGTTGAAACCCTA+AGG | - | Chr1:86588097-86588116 | MsG0180005078.01.T01:CDS | 35.0% | |
| GAAGGATGAAATCAAGAAAG+AGG | - | Chr1:86587873-86587892 | MsG0180005078.01.T01:CDS | 35.0% | |
| GAATGACAACGTCATAGTTA+GGG | + | Chr1:86588023-86588042 | None:intergenic | 35.0% | |
| TGAATGACAACGTCATAGTT+AGG | + | Chr1:86588024-86588043 | None:intergenic | 35.0% | |
| !! | ACATGCATAGAACTTGTTGT+TGG | + | Chr1:86587995-86588014 | None:intergenic | 35.0% |
| !! | CATGCATAGAACTTGTTGTT+GGG | + | Chr1:86587994-86588013 | None:intergenic | 35.0% |
| !!! | ATTTTGATTTGCCTGCTGAT+TGG | - | Chr1:86588199-86588218 | MsG0180005078.01.T01:CDS | 35.0% |
| CTTCGATATGAAGCGATTCA+AGG | - | Chr1:86588120-86588139 | MsG0180005078.01.T01:CDS | 40.0% | |
| GATTTATTCCACCAATCAGC+AGG | + | Chr1:86588213-86588232 | None:intergenic | 40.0% | |
| ! | CCAAGTTTGAGTTTCGAGAA+GGG | + | Chr1:86587904-86587923 | None:intergenic | 40.0% |
| ! | TCCAAGTTTGAGTTTCGAGA+AGG | + | Chr1:86587905-86587924 | None:intergenic | 40.0% |
| CAACACACGGAAGAGAAAGA+AGG | - | Chr1:86587855-86587874 | MsG0180005078.01.T01:CDS | 45.0% | |
| CCCTTCTCGAAACTCAAACT+TGG | - | Chr1:86587901-86587920 | MsG0180005078.01.T01:CDS | 45.0% | |
| CGCTTCATATCGAAGCCTTA+GGG | + | Chr1:86588115-86588134 | None:intergenic | 45.0% | |
| TCGCTTCATATCGAAGCCTT+AGG | + | Chr1:86588116-86588135 | None:intergenic | 45.0% | |
| ! | GTCATTCAGCGTTTTCTGAC+CGG | - | Chr1:86588036-86588055 | MsG0180005078.01.T01:CDS | 45.0% |
| !! | CTTCCGTGTGTTGTTTCTCT+CGG | + | Chr1:86587848-86587867 | None:intergenic | 45.0% |
| !! | TTGATTTGCCTGCTGATTGG+TGG | - | Chr1:86588202-86588221 | MsG0180005078.01.T01:CDS | 45.0% |
| CTCATCCTCGTCCATATGTC+CGG | + | Chr1:86588058-86588077 | None:intergenic | 50.0% | |
| ! | CTTCTTCGCTTCGCTTGCTA+CGG | + | Chr1:86588307-86588326 | None:intergenic | 50.0% |
| ! | GCGTTTTCTGACCGGACATA+TGG | - | Chr1:86588044-86588063 | MsG0180005078.01.T01:CDS | 50.0% |
| CGGCCGAGAGAAACAACACA+CGG | - | Chr1:86587842-86587861 | MsG0180005078.01.T01:CDS | 55.0% | |
| TCTGACCGGACATATGGACG+AGG | - | Chr1:86588050-86588069 | MsG0180005078.01.T01:CDS | 55.0% | |
| ! | TTGTTTCTCTCGGCCGCCAT+TGG | + | Chr1:86587838-86587857 | None:intergenic | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| Chr1 | gene | 86587799 | 86588362 | 86587799 | ID=MsG0180005078.01;Name=MsG0180005078.01 |
| Chr1 | mRNA | 86587799 | 86588362 | 86587799 | ID=MsG0180005078.01.T01;Parent=MsG0180005078.01;Name=MsG0180005078.01.T01;_AED=0.00;_eAED=0.00;_QI=0|-1|0|1|-1|0|1|0|187 |
| Chr1 | exon | 86587799 | 86588362 | 86587799 | ID=MsG0180005078.01.T01:exon:10104;Parent=MsG0180005078.01.T01 |
| Chr1 | CDS | 86587799 | 86588362 | 86587799 | ID=MsG0180005078.01.T01:cds;Parent=MsG0180005078.01.T01 |
| Chr1 | mRNA | 86587799 | 86588323 | 86587799 | ID=MsG0180005078.01.T02;Parent=MsG0180005078.01;Name=MsG0180005078.01.T02;_AED=0.04;_eAED=0.04;_QI=0|-1|0|1|-1|0|1|0|174 |
| Chr1 | exon | 86587799 | 86588323 | 86587799 | ID=MsG0180005078.01.T02:exon:10105;Parent=MsG0180005078.01.T02 |
| Chr1 | CDS | 86587799 | 86588323 | 86587799 | ID=MsG0180005078.01.T02:cds;Parent=MsG0180005078.01.T02 |
| Chr1 | mRNA | 86588136 | 86588204 | 86588136 | ID=MsG0180005078.01.T03;Parent=MsG0180005078.01;Name=MsG0180005078.01.T03;_AED=0.44;_eAED=1.00;_QI=0|-1|0|1|-1|0|1|0|22 |
| Chr1 | exon | 86588136 | 86588204 | 86588136 | ID=MsG0180005078.01.T03:exon:10106;Parent=MsG0180005078.01.T03 |
| Chr1 | CDS | 86588136 | 86588204 | 86588136 | ID=MsG0180005078.01.T03:cds;Parent=MsG0180005078.01.T03 |
| Gene Sequence |
| Protein sequence |
