AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0180005277.01

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0180005277.01.T01 MTR_1g096240 93.103 464 24 3 1 463 1 457 0.0 775
MsG0180005277.01.T01 MTR_1g111140 63.288 444 135 5 33 463 42 470 0.0 523
MsG0180005277.01.T01 MTR_8g018770 36.508 441 247 11 40 461 115 541 4.55e-68 227
MsG0180005277.01.T01 MTR_1g091037 30.580 448 256 10 44 463 205 625 8.90e-49 177
MsG0180005277.01.T01 MTR_1g091037 48.750 80 38 2 44 121 79 157 1.62e-13 73.2
MsG0180005277.01.T01 MTR_1g091037 30.580 448 256 10 44 463 213 633 1.16e-48 176
MsG0180005277.01.T01 MTR_1g091037 48.750 80 38 2 44 121 87 165 1.69e-13 73.2
MsG0180005277.01.T01 MTR_4g120220 25.785 446 281 8 51 463 89 517 5.73e-33 131
MsG0180005277.01.T01 MTR_5g093300 25.059 423 256 10 41 461 88 451 8.90e-32 127
MsG0180005277.01.T01 MTR_2g006820 24.648 426 255 10 41 461 85 449 4.85e-31 124
MsG0180005277.01.T01 MTR_1g096250 76.471 68 12 2 189 255 14 78 1.32e-21 89.7
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0180005277.01.T01 AT1G34430 74.409 465 117 2 1 463 1 465 0.0 641
MsG0180005277.01.T01 AT3G25860 65.781 301 90 2 176 463 180 480 1.21e-138 407
MsG0180005277.01.T01 AT1G54220 35.601 441 250 13 40 461 112 537 6.90e-65 218
MsG0180005277.01.T01 AT1G54220 35.601 441 250 13 40 461 112 537 6.90e-65 218
MsG0180005277.01.T01 AT3G13930 35.402 435 259 9 40 461 112 537 8.42e-65 218
MsG0180005277.01.T01 AT3G52200 31.579 456 241 13 44 463 217 637 2.70e-47 173
MsG0180005277.01.T01 AT3G52200 46.250 80 40 2 44 121 90 168 2.65e-13 72.8
MsG0180005277.01.T01 AT3G52200 31.718 454 239 13 44 461 293 711 5.77e-47 173
MsG0180005277.01.T01 AT3G52200 46.250 80 40 2 44 121 166 244 2.43e-13 72.8
MsG0180005277.01.T01 AT3G06850 26.107 429 262 7 51 461 87 478 2.92e-33 131
MsG0180005277.01.T01 AT3G06850 26.107 429 262 7 51 461 87 478 2.92e-33 131
MsG0180005277.01.T01 AT4G26910 25.000 424 258 11 41 461 94 460 1.89e-22 100
MsG0180005277.01.T01 AT4G26910 25.000 424 258 11 41 461 93 459 2.06e-22 100
MsG0180005277.01.T01 AT4G26910 24.402 418 256 10 47 461 1 361 1.91e-21 95.9
MsG0180005277.01.T01 AT5G55070 31.892 185 119 4 279 461 281 460 9.97e-20 92.0
MsG0180005277.01.T01 AT5G55070 31.892 185 119 4 279 461 281 460 9.97e-20 92.0

Find 169 sgRNAs with CRISPR-Local

Find 319 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GTCACTTGCTTTGTGATTTA+TGG 0.114194 1:-89552062 None:intergenic
ATGCTGGTTCCACCAAATTT+AGG 0.128436 1:+89556628 MsG0180005277.01.T01:three_prime_UTR
GTGGAGTTGGGACAAATTAT+TGG 0.234111 1:+89552811 MsG0180005277.01.T01:CDS
ACATTGTAATGTTGGAAAAT+TGG 0.234133 1:-89552204 None:intergenic
GCTTTAAGTATCCCTAAATT+TGG 0.254584 1:-89556640 None:intergenic
AACATCCATGTCAGCTTTAT+CGG 0.257343 1:-89552455 None:intergenic
ACGGTGAAGACTGCGGTTTC+TGG 0.257738 1:+89552913 MsG0180005277.01.T01:CDS
ATCCTGAGTGGATAGTAATT+TGG 0.260855 1:-89556282 None:intergenic
TGCTGGTTCCACCAAATTTA+GGG 0.274360 1:+89556629 MsG0180005277.01.T01:three_prime_UTR
CTTTCCAACCTGGGAATGTT+TGG 0.301930 1:+89555738 MsG0180005277.01.T01:CDS
GGGAGGTGGGGTTGCGGCGG+AGG 0.305824 1:-89552267 None:intergenic
GACTAGAAAGTAAGATCTTT+AGG 0.307512 1:-89556155 None:intergenic
TGTGGGTGCGGGCGCAGGTG+AGG 0.311560 1:-89552659 None:intergenic
ACATAAATAATGGACATTAT+TGG 0.312255 1:-89556450 None:intergenic
ATTATTGGGACTGGACCTTC+AGG 0.318351 1:+89552826 MsG0180005277.01.T01:CDS
GTGGGTGTGGGTGCGGGCGC+AGG 0.318855 1:-89552664 None:intergenic
GCAGGTGAGGGTGCGGGCGC+AGG 0.328515 1:-89552646 None:intergenic
GCGGTTTCTGGTGTTGAATT+GGG 0.333108 1:+89552925 MsG0180005277.01.T01:CDS
CATGAAAATTTCGCGGATCT+TGG 0.333734 1:-89552332 None:intergenic
ACTTATTACACCGGTGCTTC+AGG 0.337206 1:+89553877 MsG0180005277.01.T01:CDS
CTACAACTAGAGTTTATTAC+AGG 0.340563 1:-89553788 None:intergenic
GTTGTGACATTTAGTATTGA+TGG 0.346222 1:+89556588 MsG0180005277.01.T01:three_prime_UTR
TGCGGTTTCTGGTGTTGAAT+TGG 0.350193 1:+89552924 MsG0180005277.01.T01:CDS
TTTCATGCTCACATAAATAA+TGG 0.351191 1:-89556460 None:intergenic
ATCACCCTATGCGAAGAAAT+TGG 0.352194 1:+89552774 MsG0180005277.01.T01:CDS
GCCGCTGCAGCAACCTTCTT+CGG 0.355775 1:-89552703 None:intergenic
TGCGGGCGCAGGTGAGGGTG+CGG 0.359907 1:-89552653 None:intergenic
ATTCCTCTATTCGTGGATTA+CGG 0.362888 1:+89556226 MsG0180005277.01.T01:three_prime_UTR
ACAGGTGTGGGTGTGGGTGC+GGG 0.369186 1:-89552670 None:intergenic
GCGGGCGCAGGTGAGGGTGC+GGG 0.369554 1:-89552652 None:intergenic
TACAGGTGTGGGTGTGGGTG+CGG 0.377802 1:-89552671 None:intergenic
TCTTTCAAAACATCCGGCTT+CGG 0.386507 1:+89552729 MsG0180005277.01.T01:CDS
TAGGAATATGGTGGAGAGTC+TGG 0.387737 1:+89552987 MsG0180005277.01.T01:CDS
TGGAGTTGGGACAAATTATT+GGG 0.398298 1:+89552812 MsG0180005277.01.T01:CDS
ACTAGAAAGTAAGATCTTTA+GGG 0.398498 1:-89556154 None:intergenic
GTGGGTGCGGGCGCAGGTGA+GGG 0.406643 1:-89552658 None:intergenic
CTGTAATAAACTCTAGTTGT+AGG 0.413101 1:+89553789 MsG0180005277.01.T01:CDS
CTCAGGATTGTGCAAAGAAC+AGG 0.413246 1:+89556297 MsG0180005277.01.T01:three_prime_UTR
GCAGATCATCGAGTAATCTA+TGG 0.414637 1:+89556083 MsG0180005277.01.T01:CDS
GTTGAAGCATTTGCAGCTAC+AGG 0.415098 1:+89552868 MsG0180005277.01.T01:CDS
GGGGTTGCGGCGGAGGACGG+TGG 0.420400 1:-89552260 None:intergenic
GGCGGTTCTTTCAAAACATC+CGG 0.421491 1:+89552723 MsG0180005277.01.T01:CDS
AGGCTGCAGCTGCTTAGCTC+TGG 0.423811 1:-89554047 None:intergenic
GTTGCGGCGGAGGACGGTGG+AGG 0.425862 1:-89552257 None:intergenic
CTCTTCCCTCCCTCCGAAGC+CGG 0.426499 1:-89552742 None:intergenic
ATAAGATTACTCACGGTTCC+AGG 0.429298 1:-89555789 None:intergenic
TGGTTGAAGTGTTGCGGTAA+AGG 0.432205 1:-89552288 None:intergenic
GAAGGAATTGAAGGTGGAGT+TGG 0.435661 1:+89552798 MsG0180005277.01.T01:CDS
GGTTGAAGTGTTGCGGTAAA+GGG 0.442544 1:-89552287 None:intergenic
GGTAAAGGGAGGTGGGGTTG+CGG 0.447342 1:-89552273 None:intergenic
GAATGCTGTGAGTAGGAATA+TGG 0.448089 1:+89552975 MsG0180005277.01.T01:CDS
GTTTATGATTCCTCTATTCG+TGG 0.449148 1:+89556219 MsG0180005277.01.T01:three_prime_UTR
AAAGGGAGGTGGGGTTGCGG+CGG 0.450743 1:-89552270 None:intergenic
AGTGTTGCGGTAAAGGGAGG+TGG 0.453196 1:-89552281 None:intergenic
TTAAGTATCCCTAAATTTGG+TGG 0.454884 1:-89556637 None:intergenic
AACAACGACACTATCGCCTT+TGG 0.455584 1:-89552425 None:intergenic
GTGGAAGGAGTTGGTTGATA+AGG 0.457344 1:+89554024 MsG0180005277.01.T01:CDS
GGTGGGGTTGCGGCGGAGGA+CGG 0.457710 1:-89552263 None:intergenic
GCCGCTATTGTTGTTGAAGA+AGG 0.464692 1:+89552502 MsG0180005277.01.T01:CDS
AATCCGTAATCCACGAATAG+AGG 0.465162 1:-89556229 None:intergenic
GTGTTGCGGTAAAGGGAGGT+GGG 0.465688 1:-89552280 None:intergenic
AGATGAAGATGAAAGAGCTT+TGG 0.466442 1:-89552596 None:intergenic
GCATTCTGCATTGTCGTAAA+CGG 0.467916 1:-89552958 None:intergenic
TTCGCCAATTTCTTCGCATA+GGG 0.468048 1:-89552778 None:intergenic
TGGACCTTCAGGGAGGGTTG+TGG 0.475962 1:+89552837 MsG0180005277.01.T01:CDS
GCCAACTGTTGTGGCTACTA+AGG 0.479728 1:+89555896 MsG0180005277.01.T01:CDS
AAGGAATTGAAGGTGGAGTT+GGG 0.480219 1:+89552799 MsG0180005277.01.T01:CDS
GGTGCTTCAGGATGCTGATA+AGG 0.482446 1:+89553889 MsG0180005277.01.T01:CDS
CGGTTTCTGGTGTTGAATTG+GGG 0.486100 1:+89552926 MsG0180005277.01.T01:CDS
AAGCTGAGACATTGTAATGT+TGG 0.489128 1:-89552212 None:intergenic
GGTCCTCAATAATCTGAGAC+AGG 0.489187 1:-89556133 None:intergenic
AGATTCTACAGGTGTGGGTG+TGG 0.489840 1:-89552677 None:intergenic
TAGGGAGCGATTATGGCAGT+TGG 0.490706 1:+89555864 MsG0180005277.01.T01:intron
TCTATTCATTGTCAAGAAAG+TGG 0.493609 1:+89554005 MsG0180005277.01.T01:CDS
CCGAGGGTAAAATTGTCTCT+TGG 0.496659 1:+89552377 MsG0180005277.01.T01:CDS
AAATTTGCAGGTCAATGTTA+CGG 0.498023 1:+89556061 MsG0180005277.01.T01:intron
GCAGTCGCTGTGGCTATAGA+TGG 0.499476 1:+89553851 MsG0180005277.01.T01:CDS
TGTTGCAGCAGTGGCGGAGA+CGG 0.500048 1:+89552894 MsG0180005277.01.T01:CDS
CGGTTGAGATTCTACAGGTG+TGG 0.501111 1:-89552683 None:intergenic
TTTGATGCTATTCTGCCTCC+TGG 0.504002 1:+89555771 MsG0180005277.01.T01:CDS
TGGGACTGGACCTTCAGGGA+GGG 0.505400 1:+89552831 MsG0180005277.01.T01:CDS
TTGGGACAAATTATTGGGAC+TGG 0.506592 1:+89552817 MsG0180005277.01.T01:CDS
CTTCGCCAATTTCTTCGCAT+AGG 0.507995 1:-89552779 None:intergenic
TGTAATAAACTCTAGTTGTA+GGG 0.508182 1:+89553790 MsG0180005277.01.T01:CDS
AAATATCAGATCAAGTCAAA+GGG 0.514236 1:+89553710 MsG0180005277.01.T01:intron
AAAATATCAGATCAAGTCAA+AGG 0.514317 1:+89553709 MsG0180005277.01.T01:intron
TACTTTCACTCTTTCCAACC+TGG 0.519342 1:+89555728 MsG0180005277.01.T01:CDS
TACAGGGAGTGTTGCAGCAG+TGG 0.520994 1:+89552885 MsG0180005277.01.T01:CDS
TGTAGAATCTCAACCGAAGA+AGG 0.522905 1:+89552690 MsG0180005277.01.T01:CDS
TTCAAAACATCCGGCTTCGG+AGG 0.527169 1:+89552732 MsG0180005277.01.T01:CDS
GTCATTGTGGAACTGAGTGC+TGG 0.528269 1:-89552355 None:intergenic
GGTTGAGATTCTACAGGTGT+GGG 0.531320 1:-89552682 None:intergenic
TTCTTCGGTTGAGATTCTAC+AGG 0.532090 1:-89552688 None:intergenic
ACCGAAGAAGGTTGCTGCAG+CGG 0.535366 1:+89552702 MsG0180005277.01.T01:CDS
AACATCCGGCTTCGGAGGGA+GGG 0.535366 1:+89552737 MsG0180005277.01.T01:CDS
GCGGACGACGAAGTGGTTTG+TGG 0.535513 1:-89552308 None:intergenic
GAAATTGGCGAAGGAATTGA+AGG 0.536019 1:+89552789 MsG0180005277.01.T01:CDS
GTCTCTTGGATCAAATCAGA+AGG 0.538266 1:+89552391 MsG0180005277.01.T01:CDS
AAACATCCGGCTTCGGAGGG+AGG 0.541577 1:+89552736 MsG0180005277.01.T01:CDS
GAAGGTGATGTCGCTGCGGT+TGG 0.543282 1:+89552520 MsG0180005277.01.T01:CDS
AGAGGAAATTGAACTAGCTA+AGG 0.543514 1:+89552573 MsG0180005277.01.T01:CDS
TATTCTAATGCTGCATACAA+AGG 0.543622 1:+89556189 MsG0180005277.01.T01:three_prime_UTR
TATGACAGCATTGCTTGCTA+AGG 0.547412 1:+89553739 MsG0180005277.01.T01:CDS
GTCAAGAAAGTGGAAGGAGT+TGG 0.548395 1:+89554015 MsG0180005277.01.T01:CDS
GATCAACGCCAAACATTCCC+AGG 0.548864 1:-89555746 None:intergenic
GTATACCCAACTCTAAAAGT+AGG 0.550472 1:-89553015 None:intergenic
TCCTTAGTAGCCACAACAGT+TGG 0.552942 1:-89555897 None:intergenic
ATTTCTCGCTGAAACTGAAG+AGG 0.553938 1:+89552555 MsG0180005277.01.T01:CDS
GGAGGACGGTGGAGGAAGAG+AGG 0.554510 1:-89552249 None:intergenic
TTATTGGGACTGGACCTTCA+GGG 0.556941 1:+89552827 MsG0180005277.01.T01:CDS
AACGCCAAACATTCCCAGGT+TGG 0.559639 1:-89555742 None:intergenic
ACTTTCACTCTTTCCAACCT+GGG 0.563865 1:+89555729 MsG0180005277.01.T01:CDS
AGTTTCAGCGAGAAATGCAA+TGG 0.564746 1:-89552548 None:intergenic
TGCGGGCGCAGGTGAAGTAG+AGG 0.567434 1:-89552635 None:intergenic
GCTACTAAGGATGGTCGCAT+TGG 0.568539 1:+89555909 MsG0180005277.01.T01:CDS
GTTTCAGCGAGAAATGCAAT+GGG 0.569480 1:-89552547 None:intergenic
GCAAGTGACGTTAGATTCAG+TGG 0.571101 1:+89552076 MsG0180005277.01.T01:five_prime_UTR
ATAAACTCTAGTTGTAGGGA+TGG 0.571146 1:+89553794 MsG0180005277.01.T01:CDS
TCAAAACATCCGGCTTCGGA+GGG 0.571965 1:+89552733 MsG0180005277.01.T01:CDS
AAATTGGATTGAAGAAAATG+AGG 0.573598 1:-89552188 None:intergenic
TTCATTGTCAAGAAAGTGGA+AGG 0.575792 1:+89554009 MsG0180005277.01.T01:CDS
GATTCTACAGGTGTGGGTGT+GGG 0.576106 1:-89552676 None:intergenic
TTATCAGCATCCTGAAGCAC+CGG 0.577664 1:-89553887 None:intergenic
TTGAAGCATTTGCAGCTACA+GGG 0.579570 1:+89552869 MsG0180005277.01.T01:CDS
GGTTTGTGGTTGAAGTGTTG+CGG 0.586256 1:-89552294 None:intergenic
AGGGAGTGTTGCAGCAGTGG+CGG 0.586629 1:+89552888 MsG0180005277.01.T01:CDS
AACCCTGTCTCAGATTATTG+AGG 0.587408 1:+89556130 MsG0180005277.01.T01:CDS
GTGCTGGCATGAAAATTTCG+CGG 0.589246 1:-89552339 None:intergenic
ACTGTTGTGGCTACTAAGGA+TGG 0.592061 1:+89555900 MsG0180005277.01.T01:CDS
TAAGGCTACAGCACTTGCGC+TGG 0.592098 1:+89553757 MsG0180005277.01.T01:CDS
GAAGAAGGTTGCTGCAGCGG+CGG 0.593672 1:+89552705 MsG0180005277.01.T01:CDS
AGCCAAATTACTATCCACTC+AGG 0.597800 1:+89556280 MsG0180005277.01.T01:three_prime_UTR
TGTTGCGGTAAAGGGAGGTG+GGG 0.601140 1:-89552279 None:intergenic
TGGTGTTGAATTGGGGACTG+TGG 0.606170 1:+89552933 MsG0180005277.01.T01:CDS
AACATCGCAGCCAACTGTTG+TGG 0.606548 1:+89555887 MsG0180005277.01.T01:CDS
TGCTGTGAGTAGGAATATGG+TGG 0.607504 1:+89552978 MsG0180005277.01.T01:CDS
ATTGGCGAAGGAATTGAAGG+TGG 0.607948 1:+89552792 MsG0180005277.01.T01:CDS
CAATGCAGAATGCTGTGAGT+AGG 0.608840 1:+89552968 MsG0180005277.01.T01:CDS
TCTCTTGGATCAAATCAGAA+GGG 0.609630 1:+89552392 MsG0180005277.01.T01:CDS
TGAAGTGTTGCGGTAAAGGG+AGG 0.614058 1:-89552284 None:intergenic
TTAGCCACAACCCTCCCTGA+AGG 0.622517 1:-89552841 None:intergenic
GTCGCTGTGGCTATAGATGG+TGG 0.623776 1:+89553854 MsG0180005277.01.T01:CDS
TCTTGGCGCGGACGACGAAG+TGG 0.624233 1:-89552315 None:intergenic
TGGCACGAAGAATCAAATGC+AGG 0.626092 1:+89555929 MsG0180005277.01.T01:CDS
ACTTGATGCTCTCTACAAGA+AGG 0.626411 1:+89553053 MsG0180005277.01.T01:CDS
TGAATCCGATAAAGCTGACA+TGG 0.626546 1:+89552450 MsG0180005277.01.T01:CDS
GGAGGGAGGGAAGAGAGTGG+TGG 0.629189 1:+89552750 MsG0180005277.01.T01:CDS
CTCTTGGATCAAATCAGAAG+GGG 0.630932 1:+89552393 MsG0180005277.01.T01:CDS
GTCCTCAATAATCTGAGACA+GGG 0.632705 1:-89556132 None:intergenic
GATGTTGAAACTTTCTACGA+CGG 0.632951 1:+89552472 MsG0180005277.01.T01:CDS
CATCAACATTGCAGTCGCTG+TGG 0.633131 1:+89553841 MsG0180005277.01.T01:CDS
CAGCCTCATGAGTACACCAC+AGG 0.636405 1:+89554064 MsG0180005277.01.T01:CDS
GAAGGGGACAAACTCTCCAA+AGG 0.641779 1:+89552409 MsG0180005277.01.T01:CDS
GTTCTTTGCACAATCCTGAG+TGG 0.643559 1:-89556294 None:intergenic
TTGGGACTGGACCTTCAGGG+AGG 0.647676 1:+89552830 MsG0180005277.01.T01:CDS
AAATTTCGCGGATCTTGGCG+CGG 0.648033 1:-89552327 None:intergenic
TTCGGAGGGAGGGAAGAGAG+TGG 0.651131 1:+89552747 MsG0180005277.01.T01:CDS
CTCAGTTCCACAATGACCGA+GGG 0.651964 1:+89552361 MsG0180005277.01.T01:CDS
CTATGCGAAGAAATTGGCGA+AGG 0.655491 1:+89552780 MsG0180005277.01.T01:CDS
ACCTTCTTCAACAACAATAG+CGG 0.666193 1:-89552503 None:intergenic
ATACCTGTGGTGTACTCATG+AGG 0.667204 1:-89554067 None:intergenic
ACTCAGTTCCACAATGACCG+AGG 0.671313 1:+89552360 MsG0180005277.01.T01:CDS
GGCGGAGACGGTGAAGACTG+CGG 0.676343 1:+89552906 MsG0180005277.01.T01:CDS
AGATGGTGGACTTATTACAC+CGG 0.677164 1:+89553868 MsG0180005277.01.T01:CDS
GAATATGGTGGAGAGTCTGG+CGG 0.715486 1:+89552990 MsG0180005277.01.T01:CDS
AGATTACTCACGGTTCCAGG+AGG 0.719011 1:-89555786 None:intergenic
CTTCAACAACAATAGCGGCG+AGG 0.722816 1:-89552498 None:intergenic
ACGGTGGAGGAAGAGAGGAA+CGG 0.731025 1:-89552244 None:intergenic
TGAAGAAGGTGATGTCGCTG+CGG 0.740838 1:+89552516 MsG0180005277.01.T01:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AATATTAAGTTAATTATCAA+TGG - Chr1:89554181-89554200 None:intergenic 10.0%
!! AATTTATAGTATAAAAAAAC+GGG - Chr1:89555499-89555518 None:intergenic 10.0%
!! CAATTTATAGTATAAAAAAA+CGG - Chr1:89555500-89555519 None:intergenic 10.0%
!!! GTATAGTAATTATATTTTAT+TGG + Chr1:89554086-89554105 MsG0180005277.01.T01:intron 10.0%
!! GTTTATTTGATGTATATTAT+AGG + Chr1:89553976-89553995 MsG0180005277.01.T01:intron 15.0%
!! TTAGACGTTTATTAATAAAA+AGG - Chr1:89554587-89554606 None:intergenic 15.0%
!!! AAATGATTTTACTGAAATTT+TGG - Chr1:89555192-89555211 None:intergenic 15.0%
!!! AGTATGACTTATTTATTTTT+TGG + Chr1:89555982-89556001 MsG0180005277.01.T01:intron 15.0%
!!! TAAGCCATTTTTTAAAATTT+TGG - Chr1:89554249-89554268 None:intergenic 15.0%
!!! TTGTCCAAAATTTTAAAAAA+TGG + Chr1:89554242-89554261 MsG0180005277.01.T01:intron 15.0%
!!! TTTTTTTTTATAATACTGTC+TGG + Chr1:89556393-89556412 MsG0180005277.01.T01:three_prime_UTR 15.0%
!! AAATATAATTACTATACCTG+TGG - Chr1:89554083-89554102 None:intergenic 20.0%
!! AATGACATTAATAAAAATGC+TGG + Chr1:89556612-89556631 MsG0180005277.01.T01:three_prime_UTR 20.0%
!! ACTATAGAATTAGTTAATTC+TGG + Chr1:89554333-89554352 MsG0180005277.01.T01:intron 20.0%
!! ATGATAAATTGTAAAATCCA+TGG - Chr1:89554126-89554145 None:intergenic 20.0%
!! CAAAAAATAAATGATAACAC+TGG + Chr1:89554276-89554295 MsG0180005277.01.T01:intron 20.0%
!! TAGAAAAATCTGAAAAACTA+TGG - Chr1:89553618-89553637 None:intergenic 20.0%
!!! ACATAAATAATGGACATTAT+TGG - Chr1:89556453-89556472 None:intergenic 20.0%
!!! ATTATGTTCTGAAGAAAAAA+AGG + Chr1:89556531-89556550 MsG0180005277.01.T01:three_prime_UTR 20.0%
!!! ATTTAAAACAGTTTGAACAT+GGG - Chr1:89553662-89553681 None:intergenic 20.0%
!!! TATCTTATCCTATTTTAGTT+AGG + Chr1:89555138-89555157 MsG0180005277.01.T01:intron 20.0%
!!! TGGTTATGTATTTGTTTTTT+TGG + Chr1:89556413-89556432 MsG0180005277.01.T01:three_prime_UTR 20.0%
!!! TTATTGGGATTTTTGATAAA+TGG + Chr1:89553197-89553216 MsG0180005277.01.T01:intron 20.0%
!!! TTTGTATCTTTATGTTTTCA+GGG + Chr1:89555452-89555471 MsG0180005277.01.T01:intron 20.0%
!!! TTTTGTATCTTTATGTTTTC+AGG + Chr1:89555451-89555470 MsG0180005277.01.T01:intron 20.0%
! AAAATATCAGATCAAGTCAA+AGG + Chr1:89553709-89553728 MsG0180005277.01.T01:intron 25.0%
! AAAATCCTTGATGAAAAGTT+TGG + Chr1:89554426-89554445 MsG0180005277.01.T01:intron 25.0%
! AAATATCAGATCAAGTCAAA+GGG + Chr1:89553710-89553729 MsG0180005277.01.T01:intron 25.0%
! AAATTGGATTGAAGAAAATG+AGG - Chr1:89552191-89552210 None:intergenic 25.0%
! ACATTGTAATGTTGGAAAAT+TGG - Chr1:89552207-89552226 None:intergenic 25.0%
! ACTAATAAAGCGAATATATG+AGG - Chr1:89555540-89555559 None:intergenic 25.0%
! ACTAGAAAGTAAGATCTTTA+GGG - Chr1:89556157-89556176 None:intergenic 25.0%
! ATACATAATTCACCACTTAT+TGG + Chr1:89553181-89553200 MsG0180005277.01.T01:intron 25.0%
! ATATTTGAACAATCAAGTTC+TGG - Chr1:89555364-89555383 None:intergenic 25.0%
! CATAGAATCCTTATATTTGT+GGG + Chr1:89554143-89554162 MsG0180005277.01.T01:intron 25.0%
! CGTTTATTAATAAAAAGGAG+AGG - Chr1:89554582-89554601 None:intergenic 25.0%
! GAATTTCTGAGCTAAATAAA+AGG + Chr1:89553316-89553335 MsG0180005277.01.T01:intron 25.0%
! GACATTGATCATTATTGTTA+TGG - Chr1:89555117-89555136 None:intergenic 25.0%
! TACATAATTCACCACTTATT+GGG + Chr1:89553182-89553201 MsG0180005277.01.T01:intron 25.0%
! TACCTAAAAGCTAAAACTAA+CGG - Chr1:89554485-89554504 None:intergenic 25.0%
! TCATAGAATCCTTATATTTG+TGG + Chr1:89554142-89554161 MsG0180005277.01.T01:intron 25.0%
! TGTAATAAACTCTAGTTGTA+GGG + Chr1:89553790-89553809 MsG0180005277.01.T01:CDS 25.0%
! TTATAGAACTCGAATGATTA+GGG + Chr1:89553236-89553255 MsG0180005277.01.T01:intron 25.0%
! TTATCAAAAATCCCAATAAG+TGG - Chr1:89553196-89553215 None:intergenic 25.0%
! TTTATAGAACTCGAATGATT+AGG + Chr1:89553235-89553254 MsG0180005277.01.T01:intron 25.0%
! TTTCATGCTCACATAAATAA+TGG - Chr1:89556463-89556482 None:intergenic 25.0%
!! AAGTCTTATACTATATGCAT+AGG + Chr1:89554211-89554230 MsG0180005277.01.T01:intron 25.0%
!! ATCTTATTTGTGCTCTAATA+AGG + Chr1:89555805-89555824 MsG0180005277.01.T01:intron 25.0%
!! ATTGTGTTCATTTGCTAAAA+AGG + Chr1:89553954-89553973 MsG0180005277.01.T01:intron 25.0%
!! CATTTAAAACAGTTTGAACA+TGG - Chr1:89553663-89553682 None:intergenic 25.0%
!!! AATGCAATTTTCAGTTTTGA+TGG - Chr1:89554694-89554713 None:intergenic 25.0%
!!! ATGCAATTTTCAGTTTTGAT+GGG - Chr1:89554693-89554712 None:intergenic 25.0%
!!! CATTATATAGCTTGTTCTTT+TGG - Chr1:89555613-89555632 None:intergenic 25.0%
!!! TTAGTTTTAGCTTTTAGGTA+TGG + Chr1:89554485-89554504 MsG0180005277.01.T01:intron 25.0%
!!! TTCTGTTCTTTTTTAACTGA+AGG + Chr1:89556033-89556052 MsG0180005277.01.T01:intron 25.0%
AAACCTCAAAAATACAGCTA+AGG - Chr1:89554827-89554846 None:intergenic 30.0%
AAACTGAAAATGGTAAAGGA+GGG - Chr1:89555237-89555256 None:intergenic 30.0%
AAATTTGCAGGTCAATGTTA+CGG + Chr1:89556061-89556080 MsG0180005277.01.T01:intron 30.0%
AACATGCAATCAATCATACA+TGG - Chr1:89553541-89553560 None:intergenic 30.0%
AATCCTTATATTTGTGGGAA+GGG + Chr1:89554148-89554167 MsG0180005277.01.T01:intron 30.0%
AATTAACAGGAGAGCTAATA+TGG + Chr1:89554898-89554917 MsG0180005277.01.T01:intron 30.0%
ACATGAATTTGATTGTTCTG+TGG + Chr1:89555830-89555849 MsG0180005277.01.T01:intron 30.0%
AGAATCATATATCCATATCC+AGG + Chr1:89556009-89556028 MsG0180005277.01.T01:intron 30.0%
AGCACAAATAAGATTACTCA+CGG - Chr1:89555799-89555818 None:intergenic 30.0%
ATATGAGGTAGAATTGTACT+AGG - Chr1:89555525-89555544 None:intergenic 30.0%
ATATTAGCAACTCTAGTCTA+AGG - Chr1:89554934-89554953 None:intergenic 30.0%
CTACAACTAGAGTTTATTAC+AGG - Chr1:89553791-89553810 None:intergenic 30.0%
CTGTAATAAACTCTAGTTGT+AGG + Chr1:89553789-89553808 MsG0180005277.01.T01:CDS 30.0%
GACTAGAAAGTAAGATCTTT+AGG - Chr1:89556158-89556177 None:intergenic 30.0%
GAGGTTGGAAGAATAAATTT+GGG + Chr1:89554867-89554886 MsG0180005277.01.T01:intron 30.0%
GTTCAGTCATTTATATATGC+TGG + Chr1:89555959-89555978 MsG0180005277.01.T01:intron 30.0%
GTTGAACTTTGACATTCAAT+TGG + Chr1:89555641-89555660 MsG0180005277.01.T01:intron 30.0%
GTTTACAGAGCATGAAATTA+AGG + Chr1:89554966-89554985 MsG0180005277.01.T01:intron 30.0%
TAACATTCAACAGTAATGTG+TGG + Chr1:89555041-89555060 MsG0180005277.01.T01:intron 30.0%
TAACGGTTCAACTTAAAACA+TGG - Chr1:89554468-89554487 None:intergenic 30.0%
TATAGAACTCGAATGATTAG+GGG + Chr1:89553237-89553256 MsG0180005277.01.T01:intron 30.0%
TATTCTAATGCTGCATACAA+AGG + Chr1:89556189-89556208 MsG0180005277.01.T01:three_prime_UTR 30.0%
TCTATTCATTGTCAAGAAAG+TGG + Chr1:89554005-89554024 MsG0180005277.01.T01:CDS 30.0%
TGAGGTTGGAAGAATAAATT+TGG + Chr1:89554866-89554885 MsG0180005277.01.T01:intron 30.0%
TGCTAAGCTATATAACATGA+GGG + Chr1:89554743-89554762 MsG0180005277.01.T01:intron 30.0%
TTCCAAACTGAAAATGGTAA+AGG - Chr1:89555241-89555260 None:intergenic 30.0%
TTGGGTTTGAAAGAATTAAC+AGG + Chr1:89554885-89554904 MsG0180005277.01.T01:intron 30.0%
! AGCATTTTCCAAACTGAAAA+TGG - Chr1:89555247-89555266 None:intergenic 30.0%
! CGAATGAAATGTAATTTGTG+GGG + Chr1:89554522-89554541 MsG0180005277.01.T01:intron 30.0%
! GCGAATGAAATGTAATTTGT+GGG + Chr1:89554521-89554540 MsG0180005277.01.T01:intron 30.0%
! GTTGTGACATTTAGTATTGA+TGG + Chr1:89556588-89556607 MsG0180005277.01.T01:three_prime_UTR 30.0%
! TCTGTGGATTTCTTTTTGTA+GGG + Chr1:89555846-89555865 MsG0180005277.01.T01:intron 30.0%
! TTCTGTGGATTTCTTTTTGT+AGG + Chr1:89555845-89555864 MsG0180005277.01.T01:intron 30.0%
!! TACTGAAATTTTGGTCTTCA+TGG - Chr1:89555183-89555202 None:intergenic 30.0%
!! TAGCTTTTAGGTATGGAATA+TGG + Chr1:89554492-89554511 MsG0180005277.01.T01:intron 30.0%
!!! AACCGTTAGTTTTAGCTTTT+AGG + Chr1:89554480-89554499 MsG0180005277.01.T01:intron 30.0%
!!! TGGGATTTATTTTATGTCCA+TGG + Chr1:89554106-89554125 MsG0180005277.01.T01:intron 30.0%
AACATGGCATATGCAAAAGT+TGG - Chr1:89554452-89554471 None:intergenic 35.0%
AACATGGGTCTACAAGTTTA+GGG - Chr1:89553647-89553666 None:intergenic 35.0%
AAGAAAATCCGAGTCCAAAT+TGG + Chr1:89554662-89554681 MsG0180005277.01.T01:intron 35.0%
AAGCTGAGACATTGTAATGT+TGG - Chr1:89552215-89552234 None:intergenic 35.0%
AAGTTAATTATCAATGGCCC+TGG - Chr1:89554175-89554194 None:intergenic 35.0%
ACCTTCTTCAACAACAATAG+CGG - Chr1:89552506-89552525 None:intergenic 35.0%
AGAAAATCCGAGTCCAAATT+GGG + Chr1:89554663-89554682 MsG0180005277.01.T01:intron 35.0%
AGAAACAACAGAAATCAGTG+AGG - Chr1:89555703-89555722 None:intergenic 35.0%
AGAGGAAATTGAACTAGCTA+AGG + Chr1:89552573-89552592 MsG0180005277.01.T01:CDS 35.0%
AGATGAAGATGAAAGAGCTT+TGG - Chr1:89552599-89552618 None:intergenic 35.0%
AGTTACTCAAGAATCCTACA+TGG + Chr1:89555281-89555300 MsG0180005277.01.T01:intron 35.0%
ATAAACTCTAGTTGTAGGGA+TGG + Chr1:89553794-89553813 MsG0180005277.01.T01:CDS 35.0%
ATCCTGAGTGGATAGTAATT+TGG - Chr1:89556285-89556304 None:intergenic 35.0%
ATGTGTGGTCAGTTACAAAT+TGG + Chr1:89555056-89555075 MsG0180005277.01.T01:intron 35.0%
CAAACTGAAAATGGTAAAGG+AGG - Chr1:89555238-89555257 None:intergenic 35.0%
CAGAGCATGAAATTAAGGAT+TGG + Chr1:89554971-89554990 MsG0180005277.01.T01:intron 35.0%
CGCGAATGAAATGTAATTTG+TGG + Chr1:89554520-89554539 MsG0180005277.01.T01:intron 35.0%
GAATCAGAATAAGACCAAGT+AGG - Chr1:89554368-89554387 None:intergenic 35.0%
GAATCCTTATATTTGTGGGA+AGG + Chr1:89554147-89554166 MsG0180005277.01.T01:intron 35.0%
GATGTTGAAACTTTCTACGA+CGG + Chr1:89552472-89552491 MsG0180005277.01.T01:CDS 35.0%
GTAGCTGACCTAACTAAAAT+AGG - Chr1:89555149-89555168 None:intergenic 35.0%
GTCACTTGCTTTGTGATTTA+TGG - Chr1:89552065-89552084 None:intergenic 35.0%
GTGCTAAGCTATATAACATG+AGG + Chr1:89554742-89554761 MsG0180005277.01.T01:intron 35.0%
GTTAAAAAAGAACAGAAGCC+TGG - Chr1:89556030-89556049 None:intergenic 35.0%
GTTTATGATTCCTCTATTCG+TGG + Chr1:89556219-89556238 MsG0180005277.01.T01:three_prime_UTR 35.0%
TAGCCTATGAAGTACAAACA+CGG + Chr1:89553345-89553364 MsG0180005277.01.T01:intron 35.0%
TCTCTTGGATCAAATCAGAA+GGG + Chr1:89552392-89552411 MsG0180005277.01.T01:CDS 35.0%
TGCAAACATGAACTTTCTAG+AGG + Chr1:89554791-89554810 MsG0180005277.01.T01:intron 35.0%
TGGAGTTGGGACAAATTATT+GGG + Chr1:89552812-89552831 MsG0180005277.01.T01:CDS 35.0%
TTATTCTGATTCTCCTGCAA+CGG + Chr1:89554376-89554395 MsG0180005277.01.T01:intron 35.0%
TTCATTGTCAAGAAAGTGGA+AGG + Chr1:89554009-89554028 MsG0180005277.01.T01:CDS 35.0%
TTGCTAATATTGCGAGAACA+AGG + Chr1:89554944-89554963 MsG0180005277.01.T01:intron 35.0%
TTTAGTTAGGTCAGCTACAT+GGG + Chr1:89555151-89555170 MsG0180005277.01.T01:intron 35.0%
! AACATACATAGAAGAGTGTG+TGG - Chr1:89555338-89555357 None:intergenic 35.0%
! AACATCCATGTCAGCTTTAT+CGG - Chr1:89552458-89552477 None:intergenic 35.0%
! AATGTAATTTGTGGGGCATT+TGG + Chr1:89554529-89554548 MsG0180005277.01.T01:intron 35.0%
! AGTACAGCTATTTGTTACGA+AGG - Chr1:89555423-89555442 None:intergenic 35.0%
! ATGATTAGGGGAAAAAGTGT+TGG + Chr1:89553249-89553268 MsG0180005277.01.T01:intron 35.0%
! ATTCCTCTATTCGTGGATTA+CGG + Chr1:89556226-89556245 MsG0180005277.01.T01:three_prime_UTR 35.0%
! CCAACTTCAAGTTATCTCTT+CGG - Chr1:89555006-89555025 None:intergenic 35.0%
! CTCCTTTACCATTTTCAGTT+TGG + Chr1:89555236-89555255 MsG0180005277.01.T01:intron 35.0%
! GTATACCCAACTCTAAAAGT+AGG - Chr1:89553018-89553037 None:intergenic 35.0%
!! CAATTTGAAAGAGTGCTTTG+AGG + Chr1:89554848-89554867 MsG0180005277.01.T01:intron 35.0%
!! CTGATTTCTGTTGTTTCTCT+AGG + Chr1:89555705-89555724 MsG0180005277.01.T01:intron 35.0%
!! GTTCCTTAGCTGTATTTTTG+AGG + Chr1:89554821-89554840 MsG0180005277.01.T01:intron 35.0%
!! TTTTAGTTAGGTCAGCTACA+TGG + Chr1:89555150-89555169 MsG0180005277.01.T01:intron 35.0%
AAAGAACAGAAGCCTGGATA+TGG - Chr1:89556024-89556043 None:intergenic 40.0%
AACCCTGTCTCAGATTATTG+AGG + Chr1:89556130-89556149 MsG0180005277.01.T01:CDS 40.0%
AAGCTATATAACATGAGGGC+TGG + Chr1:89554747-89554766 MsG0180005277.01.T01:intron 40.0%
AAGGAATTGAAGGTGGAGTT+GGG + Chr1:89552799-89552818 MsG0180005277.01.T01:CDS 40.0%
AATCCGTAATCCACGAATAG+AGG - Chr1:89556232-89556251 None:intergenic 40.0%
ACAACAGAAATCAGTGAGGT+AGG - Chr1:89555699-89555718 None:intergenic 40.0%
ACTTGATGCTCTCTACAAGA+AGG + Chr1:89553053-89553072 MsG0180005277.01.T01:CDS 40.0%
ACTTTCACTCTTTCCAACCT+GGG + Chr1:89555729-89555748 MsG0180005277.01.T01:CDS 40.0%
AGCCAAATTACTATCCACTC+AGG + Chr1:89556280-89556299 MsG0180005277.01.T01:three_prime_UTR 40.0%
AGTTTCAGCGAGAAATGCAA+TGG - Chr1:89552551-89552570 None:intergenic 40.0%
ATAAGATTACTCACGGTTCC+AGG - Chr1:89555792-89555811 None:intergenic 40.0%
ATCACCCTATGCGAAGAAAT+TGG + Chr1:89552774-89552793 MsG0180005277.01.T01:CDS 40.0%
ATTTCTCGCTGAAACTGAAG+AGG + Chr1:89552555-89552574 MsG0180005277.01.T01:CDS 40.0%
CAACAGAAATCAGTGAGGTA+GGG - Chr1:89555698-89555717 None:intergenic 40.0%
CATGAAAATTTCGCGGATCT+TGG - Chr1:89552335-89552354 None:intergenic 40.0%
CCGAAGAGATAACTTGAAGT+TGG + Chr1:89555003-89555022 MsG0180005277.01.T01:intron 40.0%
CCTCGTGTTCATCGAAAAAT+CGG - Chr1:89552124-89552143 None:intergenic 40.0%
CTCTTGGATCAAATCAGAAG+GGG + Chr1:89552393-89552412 MsG0180005277.01.T01:CDS 40.0%
GAAAATCCGAGTCCAAATTG+GGG + Chr1:89554664-89554683 MsG0180005277.01.T01:intron 40.0%
GAAATTGGCGAAGGAATTGA+AGG + Chr1:89552789-89552808 MsG0180005277.01.T01:CDS 40.0%
GAACATGGGTCTACAAGTTT+AGG - Chr1:89553648-89553667 None:intergenic 40.0%
GAATGCTGTGAGTAGGAATA+TGG + Chr1:89552975-89552994 MsG0180005277.01.T01:CDS 40.0%
GCAGATCATCGAGTAATCTA+TGG + Chr1:89556083-89556102 MsG0180005277.01.T01:CDS 40.0%
GCATTCTGCATTGTCGTAAA+CGG - Chr1:89552961-89552980 None:intergenic 40.0%
GCTTCTTCAAGAGATTACCA+TGG - Chr1:89555568-89555587 None:intergenic 40.0%
GTCTCTTGGATCAAATCAGA+AGG + Chr1:89552391-89552410 MsG0180005277.01.T01:CDS 40.0%
GTGGAGTTGGGACAAATTAT+TGG + Chr1:89552811-89552830 MsG0180005277.01.T01:CDS 40.0%
GTGTTCATCGAAAAATCGGA+CGG - Chr1:89552120-89552139 None:intergenic 40.0%
GTTTCAGCGAGAAATGCAAT+GGG - Chr1:89552550-89552569 None:intergenic 40.0%
TACTTTCACTCTTTCCAACC+TGG + Chr1:89555728-89555747 MsG0180005277.01.T01:CDS 40.0%
TAGCTAGATGACTGTCACAT+TGG + Chr1:89553135-89553154 MsG0180005277.01.T01:intron 40.0%
TCTGGTCTACAAAACCTACT+TGG + Chr1:89554351-89554370 MsG0180005277.01.T01:intron 40.0%
TCTTTCAAAACATCCGGCTT+CGG + Chr1:89552729-89552748 MsG0180005277.01.T01:CDS 40.0%
TGAATCCGATAAAGCTGACA+TGG + Chr1:89552450-89552469 MsG0180005277.01.T01:CDS 40.0%
TGGTAAAGGAGGGAAGAAAT+AGG - Chr1:89555227-89555246 None:intergenic 40.0%
TGTAGAATCTCAACCGAAGA+AGG + Chr1:89552690-89552709 MsG0180005277.01.T01:CDS 40.0%
TGTCCGTGTTTGTACTTCAT+AGG - Chr1:89553351-89553370 None:intergenic 40.0%
TTCGCCAATTTCTTCGCATA+GGG - Chr1:89552781-89552800 None:intergenic 40.0%
TTCTTCGGTTGAGATTCTAC+AGG - Chr1:89552691-89552710 None:intergenic 40.0%
TTGGGACAAATTATTGGGAC+TGG + Chr1:89552817-89552836 MsG0180005277.01.T01:CDS 40.0%
TTTGATGGGAATCCCCAATT+TGG - Chr1:89554679-89554698 None:intergenic 40.0%
! AATTTTACCCTCGGTCATTG+TGG - Chr1:89552371-89552390 None:intergenic 40.0%
! CCAAGAGACAATTTTACCCT+CGG - Chr1:89552380-89552399 None:intergenic 40.0%
! CGCTTTATTAGTTTCTGCCA+TGG + Chr1:89555548-89555567 MsG0180005277.01.T01:intron 40.0%
! CTTTTTGTAGGGAGCGATTA+TGG + Chr1:89555857-89555876 MsG0180005277.01.T01:intron 40.0%
! GTCCTCAATAATCTGAGACA+GGG - Chr1:89556135-89556154 None:intergenic 40.0%
! GTTGGCCAAACTTTTCATCA+AGG - Chr1:89554434-89554453 None:intergenic 40.0%
! TATGACAGCATTGCTTGCTA+AGG + Chr1:89553739-89553758 MsG0180005277.01.T01:CDS 40.0%
! TTGAAGCATTTGCAGCTACA+GGG + Chr1:89552869-89552888 MsG0180005277.01.T01:CDS 40.0%
!! AGATGGTGGACTTATTACAC+CGG + Chr1:89553868-89553887 MsG0180005277.01.T01:CDS 40.0%
!! ATGCTGGTTCCACCAAATTT+AGG + Chr1:89556628-89556647 MsG0180005277.01.T01:three_prime_UTR 40.0%
!! TATGTTTTCAGGGCAGTTCA+TGG + Chr1:89555462-89555481 MsG0180005277.01.T01:intron 40.0%
!! TGACTGTCACATTGGTTCTT+TGG + Chr1:89553143-89553162 MsG0180005277.01.T01:intron 40.0%
!! TTGAAAGAGTGCTTTGAGGT+TGG + Chr1:89554852-89554871 MsG0180005277.01.T01:intron 40.0%
!!! ACAGGAGCAGAGTTTTGAAT+AGG + Chr1:89556315-89556334 MsG0180005277.01.T01:three_prime_UTR 40.0%
!!! CGGTTCCTACTTTTAGAGTT+GGG + Chr1:89553010-89553029 MsG0180005277.01.T01:CDS 40.0%
AACAACGACACTATCGCCTT+TGG - Chr1:89552428-89552447 None:intergenic 45.0%
ACTCAAGAATCCTACATGGC+AGG + Chr1:89555285-89555304 MsG0180005277.01.T01:intron 45.0%
ACTGTTGTGGCTACTAAGGA+TGG + Chr1:89555900-89555919 MsG0180005277.01.T01:CDS 45.0%
ACTTATTACACCGGTGCTTC+AGG + Chr1:89553877-89553896 MsG0180005277.01.T01:CDS 45.0%
ATACCTGTGGTGTACTCATG+AGG - Chr1:89554070-89554089 None:intergenic 45.0%
ATATTTGTGGGAAGGGACCA+GGG + Chr1:89554155-89554174 MsG0180005277.01.T01:intron 45.0%
ATTATTGGGACTGGACCTTC+AGG + Chr1:89552826-89552845 MsG0180005277.01.T01:CDS 45.0%
ATTGGCGAAGGAATTGAAGG+TGG + Chr1:89552792-89552811 MsG0180005277.01.T01:CDS 45.0%
CAACACGACAATGACACATG+TGG - Chr1:89553438-89553457 None:intergenic 45.0%
CAATGCAGAATGCTGTGAGT+AGG + Chr1:89552968-89552987 MsG0180005277.01.T01:CDS 45.0%
CCGAGGGTAAAATTGTCTCT+TGG + Chr1:89552377-89552396 MsG0180005277.01.T01:CDS 45.0%
CTATGCGAAGAAATTGGCGA+AGG + Chr1:89552780-89552799 MsG0180005277.01.T01:CDS 45.0%
CTCAGGATTGTGCAAAGAAC+AGG + Chr1:89556297-89556316 MsG0180005277.01.T01:three_prime_UTR 45.0%
CTTCGCCAATTTCTTCGCAT+AGG - Chr1:89552782-89552801 None:intergenic 45.0%
CTTGAAGTTGGATGCTGTTG+TGG + Chr1:89555015-89555034 MsG0180005277.01.T01:intron 45.0%
CTTTCCAACCTGGGAATGTT+TGG + Chr1:89555738-89555757 MsG0180005277.01.T01:CDS 45.0%
GAAGGAATTGAAGGTGGAGT+TGG + Chr1:89552798-89552817 MsG0180005277.01.T01:CDS 45.0%
GCAAGTGACGTTAGATTCAG+TGG + Chr1:89552076-89552095 MsG0180005277.01.T01:five_prime_UTR 45.0%
GGCGGTTCTTTCAAAACATC+CGG + Chr1:89552723-89552742 MsG0180005277.01.T01:CDS 45.0%
GGTCCCTTCCCACAAATATA+AGG - Chr1:89554154-89554173 None:intergenic 45.0%
GGTTGAGATTCTACAGGTGT+GGG - Chr1:89552685-89552704 None:intergenic 45.0%
GTCAAGAAAGTGGAAGGAGT+TGG + Chr1:89554015-89554034 MsG0180005277.01.T01:CDS 45.0%
GTCTCGTGTTTGACATGAGT+CGG - Chr1:89553471-89553490 None:intergenic 45.0%
GTTCTTTGCACAATCCTGAG+TGG - Chr1:89556297-89556316 None:intergenic 45.0%
TATATTTGTGGGAAGGGACC+AGG + Chr1:89554154-89554173 MsG0180005277.01.T01:intron 45.0%
TCCTTAGTAGCCACAACAGT+TGG - Chr1:89555900-89555919 None:intergenic 45.0%
TGCTGTGAGTAGGAATATGG+TGG + Chr1:89552978-89552997 MsG0180005277.01.T01:CDS 45.0%
TGGCACGAAGAATCAAATGC+AGG + Chr1:89555929-89555948 MsG0180005277.01.T01:CDS 45.0%
TTATATGCTGCCTGCCATGT+AGG - Chr1:89555298-89555317 None:intergenic 45.0%
TTATCAGCATCCTGAAGCAC+CGG - Chr1:89553890-89553909 None:intergenic 45.0%
TTATTGGGACTGGACCTTCA+GGG + Chr1:89552827-89552846 MsG0180005277.01.T01:CDS 45.0%
TTCATCGAAAAATCGGACGG+AGG - Chr1:89552117-89552136 None:intergenic 45.0%
TTTGATGCTATTCTGCCTCC+TGG + Chr1:89555771-89555790 MsG0180005277.01.T01:CDS 45.0%
! AATTTGTGGGGCATTTGGAG+TGG + Chr1:89554534-89554553 MsG0180005277.01.T01:intron 45.0%
! CACATGTGTCATTGTCGTGT+TGG + Chr1:89553436-89553455 MsG0180005277.01.T01:intron 45.0%
! GCCGCTATTGTTGTTGAAGA+AGG + Chr1:89552502-89552521 MsG0180005277.01.T01:CDS 45.0%
! GGTCCTCAATAATCTGAGAC+AGG - Chr1:89556136-89556155 None:intergenic 45.0%
! GTGCTGGCATGAAAATTTCG+CGG - Chr1:89552342-89552361 None:intergenic 45.0%
! GTGGAAGGAGTTGGTTGATA+AGG + Chr1:89554024-89554043 MsG0180005277.01.T01:CDS 45.0%
! GTTGAAGCATTTGCAGCTAC+AGG + Chr1:89552868-89552887 MsG0180005277.01.T01:CDS 45.0%
! TAGGAATATGGTGGAGAGTC+TGG + Chr1:89552987-89553006 MsG0180005277.01.T01:CDS 45.0%
! TGTCATTGTCGTGTTGGTGT+CGG + Chr1:89553442-89553461 MsG0180005277.01.T01:intron 45.0%
!! CCGATTTTTCGATGAACACG+AGG + Chr1:89552121-89552140 MsG0180005277.01.T01:five_prime_UTR 45.0%
!! CGGTTTCTGGTGTTGAATTG+GGG + Chr1:89552926-89552945 MsG0180005277.01.T01:CDS 45.0%
!! GCGGTTTCTGGTGTTGAATT+GGG + Chr1:89552925-89552944 MsG0180005277.01.T01:CDS 45.0%
!! GGTTGAAGTGTTGCGGTAAA+GGG - Chr1:89552290-89552309 None:intergenic 45.0%
!! GGTTTGTGGTTGAAGTGTTG+CGG - Chr1:89552297-89552316 None:intergenic 45.0%
!! GTCATTGATTTCACCGTTGC+AGG - Chr1:89554392-89554411 None:intergenic 45.0%
!! TGCGGTTTCTGGTGTTGAAT+TGG + Chr1:89552924-89552943 MsG0180005277.01.T01:CDS 45.0%
!! TGGTTGAAGTGTTGCGGTAA+AGG - Chr1:89552291-89552310 None:intergenic 45.0%
!!! GCGGTTCCTACTTTTAGAGT+TGG + Chr1:89553009-89553028 MsG0180005277.01.T01:CDS 45.0%
!! ATAAAAAAAAAAATGAAAAA+TGG - Chr1:89556384-89556403 None:intergenic 5.0%
!!! TATAGTAATTATATTTTATT+GGG + Chr1:89554087-89554106 MsG0180005277.01.T01:intron 5.0%
AAATTTCGCGGATCTTGGCG+CGG - Chr1:89552330-89552349 None:intergenic 50.0%
AACATCGCAGCCAACTGTTG+TGG + Chr1:89555887-89555906 MsG0180005277.01.T01:CDS 50.0%
AACGCCAAACATTCCCAGGT+TGG - Chr1:89555745-89555764 None:intergenic 50.0%
ACTCAGTTCCACAATGACCG+AGG + Chr1:89552360-89552379 MsG0180005277.01.T01:CDS 50.0%
AGATTACTCACGGTTCCAGG+AGG - Chr1:89555789-89555808 None:intergenic 50.0%
AGATTCTACAGGTGTGGGTG+TGG - Chr1:89552680-89552699 None:intergenic 50.0%
AGTTAGGTCAGCTACATGGG+TGG + Chr1:89555154-89555173 MsG0180005277.01.T01:intron 50.0%
CATCAACATTGCAGTCGCTG+TGG + Chr1:89553841-89553860 MsG0180005277.01.T01:CDS 50.0%
CGGTTGAGATTCTACAGGTG+TGG - Chr1:89552686-89552705 None:intergenic 50.0%
CTCAGTTCCACAATGACCGA+GGG + Chr1:89552361-89552380 MsG0180005277.01.T01:CDS 50.0%
CTTCAACAACAATAGCGGCG+AGG - Chr1:89552501-89552520 None:intergenic 50.0%
GAAGGGGACAAACTCTCCAA+AGG + Chr1:89552409-89552428 MsG0180005277.01.T01:CDS 50.0%
GATCAACGCCAAACATTCCC+AGG - Chr1:89555749-89555768 None:intergenic 50.0%
GATTCTACAGGTGTGGGTGT+GGG - Chr1:89552679-89552698 None:intergenic 50.0%
GCCAACTGTTGTGGCTACTA+AGG + Chr1:89555896-89555915 MsG0180005277.01.T01:CDS 50.0%
GCTACTAAGGATGGTCGCAT+TGG + Chr1:89555909-89555928 MsG0180005277.01.T01:CDS 50.0%
GGGAATCCCCAATTTGGACT+CGG - Chr1:89554673-89554692 None:intergenic 50.0%
GGTGCTTCAGGATGCTGATA+AGG + Chr1:89553889-89553908 MsG0180005277.01.T01:CDS 50.0%
GTCATTGTGGAACTGAGTGC+TGG - Chr1:89552358-89552377 None:intergenic 50.0%
TAGGGAGCGATTATGGCAGT+TGG + Chr1:89555864-89555883 MsG0180005277.01.T01:intron 50.0%
TCAAAACATCCGGCTTCGGA+GGG + Chr1:89552733-89552752 MsG0180005277.01.T01:CDS 50.0%
TGAAGAAGGTGATGTCGCTG+CGG + Chr1:89552516-89552535 MsG0180005277.01.T01:CDS 50.0%
TTCAAAACATCCGGCTTCGG+AGG + Chr1:89552732-89552751 MsG0180005277.01.T01:CDS 50.0%
! GAATATGGTGGAGAGTCTGG+CGG + Chr1:89552990-89553009 MsG0180005277.01.T01:CDS 50.0%
! GTCATTGTCGTGTTGGTGTC+GGG + Chr1:89553443-89553462 MsG0180005277.01.T01:intron 50.0%
! TGGTGTTGAATTGGGGACTG+TGG + Chr1:89552933-89552952 MsG0180005277.01.T01:CDS 50.0%
!! TGAAGTGTTGCGGTAAAGGG+AGG - Chr1:89552287-89552306 None:intergenic 50.0%
ACCGAAGAAGGTTGCTGCAG+CGG + Chr1:89552702-89552721 MsG0180005277.01.T01:CDS 55.0%
ACGGTGAAGACTGCGGTTTC+TGG + Chr1:89552913-89552932 MsG0180005277.01.T01:CDS 55.0%
ACGGTGGAGGAAGAGAGGAA+CGG - Chr1:89552247-89552266 None:intergenic 55.0%
AGTGTTGCGGTAAAGGGAGG+TGG - Chr1:89552284-89552303 None:intergenic 55.0%
CAGCCTCATGAGTACACCAC+AGG + Chr1:89554064-89554083 MsG0180005277.01.T01:CDS 55.0%
GCAGTCGCTGTGGCTATAGA+TGG + Chr1:89553851-89553870 MsG0180005277.01.T01:CDS 55.0%
GTCGCTGTGGCTATAGATGG+TGG + Chr1:89553854-89553873 MsG0180005277.01.T01:CDS 55.0%
GTGTTGCGGTAAAGGGAGGT+GGG - Chr1:89552283-89552302 None:intergenic 55.0%
TAAGGCTACAGCACTTGCGC+TGG + Chr1:89553757-89553776 MsG0180005277.01.T01:CDS 55.0%
TGTTGCGGTAAAGGGAGGTG+GGG - Chr1:89552282-89552301 None:intergenic 55.0%
TTAGCCACAACCCTCCCTGA+AGG - Chr1:89552844-89552863 None:intergenic 55.0%
!! TACAGGGAGTGTTGCAGCAG+TGG + Chr1:89552885-89552904 MsG0180005277.01.T01:CDS 55.0%
AAACATCCGGCTTCGGAGGG+AGG + Chr1:89552736-89552755 MsG0180005277.01.T01:CDS 60.0%
AACATCCGGCTTCGGAGGGA+GGG + Chr1:89552737-89552756 MsG0180005277.01.T01:CDS 60.0%
AGGCTGCAGCTGCTTAGCTC+TGG - Chr1:89554050-89554069 None:intergenic 60.0%
GAAGAAGGTTGCTGCAGCGG+CGG + Chr1:89552705-89552724 MsG0180005277.01.T01:CDS 60.0%
GAAGGTGATGTCGCTGCGGT+TGG + Chr1:89552520-89552539 MsG0180005277.01.T01:CDS 60.0%
GCCGCTGCAGCAACCTTCTT+CGG - Chr1:89552706-89552725 None:intergenic 60.0%
GCGGACGACGAAGTGGTTTG+TGG - Chr1:89552311-89552330 None:intergenic 60.0%
GGTAAAGGGAGGTGGGGTTG+CGG - Chr1:89552276-89552295 None:intergenic 60.0%
TACAGGTGTGGGTGTGGGTG+CGG - Chr1:89552674-89552693 None:intergenic 60.0%
TGGACCTTCAGGGAGGGTTG+TGG + Chr1:89552837-89552856 MsG0180005277.01.T01:CDS 60.0%
TGGGACTGGACCTTCAGGGA+GGG + Chr1:89552831-89552850 MsG0180005277.01.T01:CDS 60.0%
TTCGGAGGGAGGGAAGAGAG+TGG + Chr1:89552747-89552766 MsG0180005277.01.T01:CDS 60.0%
TTGGGACTGGACCTTCAGGG+AGG + Chr1:89552830-89552849 MsG0180005277.01.T01:CDS 60.0%
! TGTTGCAGCAGTGGCGGAGA+CGG + Chr1:89552894-89552913 MsG0180005277.01.T01:CDS 60.0%
!! AGGGAGTGTTGCAGCAGTGG+CGG + Chr1:89552888-89552907 MsG0180005277.01.T01:CDS 60.0%
AAAGGGAGGTGGGGTTGCGG+CGG - Chr1:89552273-89552292 None:intergenic 65.0%
ACAGGTGTGGGTGTGGGTGC+GGG - Chr1:89552673-89552692 None:intergenic 65.0%
CTCTTCCCTCCCTCCGAAGC+CGG - Chr1:89552745-89552764 None:intergenic 65.0%
GGAGGACGGTGGAGGAAGAG+AGG - Chr1:89552252-89552271 None:intergenic 65.0%
GGAGGGAGGGAAGAGAGTGG+TGG + Chr1:89552750-89552769 MsG0180005277.01.T01:CDS 65.0%
GGCGGAGACGGTGAAGACTG+CGG + Chr1:89552906-89552925 MsG0180005277.01.T01:CDS 65.0%
TCTTGGCGCGGACGACGAAG+TGG - Chr1:89552318-89552337 None:intergenic 65.0%
TGCGGGCGCAGGTGAAGTAG+AGG - Chr1:89552638-89552657 None:intergenic 65.0%
GGTGGGGTTGCGGCGGAGGA+CGG - Chr1:89552266-89552285 None:intergenic 75.0%
GTGGGTGCGGGCGCAGGTGA+GGG - Chr1:89552661-89552680 None:intergenic 75.0%
GTTGCGGCGGAGGACGGTGG+AGG - Chr1:89552260-89552279 None:intergenic 75.0%
TGCGGGCGCAGGTGAGGGTG+CGG - Chr1:89552656-89552675 None:intergenic 75.0%
TGTGGGTGCGGGCGCAGGTG+AGG - Chr1:89552662-89552681 None:intergenic 75.0%
! GGGAGGTGGGGTTGCGGCGG+AGG - Chr1:89552270-89552289 None:intergenic 80.0%
! GGGGTTGCGGCGGAGGACGG+TGG - Chr1:89552263-89552282 None:intergenic 80.0%
! GTGGGTGTGGGTGCGGGCGC+AGG - Chr1:89552667-89552686 None:intergenic 80.0%
!! GCAGGTGAGGGTGCGGGCGC+AGG - Chr1:89552649-89552668 None:intergenic 80.0%
!! GCGGGCGCAGGTGAGGGTGC+GGG - Chr1:89552655-89552674 None:intergenic 80.0%
Chromosome Type Strat End Strand Name
Chr1 gene 89552059 89556649 89552059 ID=MsG0180005277.01;Name=MsG0180005277.01
Chr1 mRNA 89552059 89556649 89552059 ID=MsG0180005277.01.T01;Parent=MsG0180005277.01;Name=MsG0180005277.01.T01;_AED=0.30;_eAED=0.30;_QI=164|1|1|1|1|1|6|474|463
Chr1 exon 89552059 89553074 89552059 ID=MsG0180005277.01.T01:exon:47790;Parent=MsG0180005277.01.T01
Chr1 exon 89553719 89553910 89553719 ID=MsG0180005277.01.T01:exon:47791;Parent=MsG0180005277.01.T01
Chr1 exon 89553998 89554085 89553998 ID=MsG0180005277.01.T01:exon:47792;Parent=MsG0180005277.01.T01
Chr1 exon 89555727 89555797 89555727 ID=MsG0180005277.01.T01:exon:47793;Parent=MsG0180005277.01.T01
Chr1 exon 89555867 89555950 89555867 ID=MsG0180005277.01.T01:exon:47794;Parent=MsG0180005277.01.T01
Chr1 exon 89556071 89556649 89556071 ID=MsG0180005277.01.T01:exon:47795;Parent=MsG0180005277.01.T01
Chr1 five_prime_UTR 89552059 89552222 89552059 ID=MsG0180005277.01.T01:five_prime_utr;Parent=MsG0180005277.01.T01
Chr1 CDS 89552223 89553074 89552223 ID=MsG0180005277.01.T01:cds;Parent=MsG0180005277.01.T01
Chr1 CDS 89553719 89553910 89553719 ID=MsG0180005277.01.T01:cds;Parent=MsG0180005277.01.T01
Chr1 CDS 89553998 89554085 89553998 ID=MsG0180005277.01.T01:cds;Parent=MsG0180005277.01.T01
Chr1 CDS 89555727 89555797 89555727 ID=MsG0180005277.01.T01:cds;Parent=MsG0180005277.01.T01
Chr1 CDS 89555867 89555950 89555867 ID=MsG0180005277.01.T01:cds;Parent=MsG0180005277.01.T01
Chr1 CDS 89556071 89556175 89556071 ID=MsG0180005277.01.T01:cds;Parent=MsG0180005277.01.T01
Chr1 three_prime_UTR 89556176 89556649 89556176 ID=MsG0180005277.01.T01:three_prime_utr;Parent=MsG0180005277.01.T01
Gene Sequence

>MsG0180005277.01.T01

ATGTCTCAGCTTCTTCAAACACCGTTCCTCTCTTCCTCCACCGTCCTCCGCCGCAACCCCACCTCCCTTTACCGCAACACTTCAACCACAAACCACTTCGTCGTCCGCGCCAAGATCCGCGAAATTTTCATGCCAGCACTCAGTTCCACAATGACCGAGGGTAAAATTGTCTCTTGGATCAAATCAGAAGGGGACAAACTCTCCAAAGGCGATAGTGTCGTTGTTGTTGAATCCGATAAAGCTGACATGGATGTTGAAACTTTCTACGACGGTATCCTCGCCGCTATTGTTGTTGAAGAAGGTGATGTCGCTGCGGTTGGATCTCCCATTGCATTTCTCGCTGAAACTGAAGAGGAAATTGAACTAGCTAAGGCCAAAGCTCTTTCATCTTCATCTTCTTCATCATCATCATCCTCTACTTCACCTGCGCCCGCACCCTCACCTGCGCCCGCACCCACACCCACACCTGTAGAATCTCAACCGAAGAAGGTTGCTGCAGCGGCGGTTCTTTCAAAACATCCGGCTTCGGAGGGAGGGAAGAGAGTGGTGGCATCACCCTATGCGAAGAAATTGGCGAAGGAATTGAAGGTGGAGTTGGGACAAATTATTGGGACTGGACCTTCAGGGAGGGTTGTGGCTAAAGATGTTGAAGCATTTGCAGCTACAGGGAGTGTTGCAGCAGTGGCGGAGACGGTGAAGACTGCGGTTTCTGGTGTTGAATTGGGGACTGTGGTGCCGTTTACGACAATGCAGAATGCTGTGAGTAGGAATATGGTGGAGAGTCTGGCGGTTCCTACTTTTAGAGTTGGGTATACTATTACTACTGATGCACTTGATGCTCTCTACAAGAAGATCAAGTCAAAGGGAGTTACTATGACAGCATTGCTTGCTAAGGCTACAGCACTTGCGCTGGCTAAACATCCTGTAATAAACTCTAGTTGTAGGGATGGTAATAGTTTTACATACAATAGCAGCATCAACATTGCAGTCGCTGTGGCTATAGATGGTGGACTTATTACACCGGTGCTTCAGGATGCTGATAAGGTTGATGTCTATTCATTGTCAAGAAAGTGGAAGGAGTTGGTTGATAAGGCCAGAGCTAAGCAGCTGCAGCCTCATGAGTACACCACAGGTACTTTCACTCTTTCCAACCTGGGAATGTTTGGCGTTGATCGCTTTGATGCTATTCTGCCTCCTGGAACCGGAGCGATTATGGCAGTTGGAACATCGCAGCCAACTGTTGTGGCTACTAAGGATGGTCGCATTGGCACGAAGAATCAAATGCAGGTCAATGTTACGGCAGATCATCGAGTAATCTATGGTTCTGATCTTGCTCTGTTCTTGCAAACCCTGTCTCAGATTATTGAGGACCCTAAAGATCTTACTTTCTAG
Protein sequence

>MsG0180005277.01.T01

MSQLLQTPFLSSSTVLRRNPTSLYRNTSTTNHFVVRAKIREIFMPALSSTMTEGKIVSWIKSEGDKLSKGDSVVVVESDKADMDVETFYDGILAAIVVEEGDVAAVGSPIAFLAETEEEIELAKAKALSSSSSSSSSSSTSPAPAPSPAPAPTPTPVESQPKKVAAAAVLSKHPASEGGKRVVASPYAKKLAKELKVELGQIIGTGPSGRVVAKDVEAFAATGSVAAVAETVKTAVSGVELGTVVPFTTMQNAVSRNMVESLAVPTFRVGYTITTDALDALYKKIKSKGVTMTALLAKATALALAKHPVINSSCRDGNSFTYNSSINIAVAVAIDGGLITPVLQDADKVDVYSLSRKWKELVDKARAKQLQPHEYTTGTFTLSNLGMFGVDRFDAILPPGTGAIMAVGTSQPTVVATKDGRIGTKNQMQVNVTADHRVIYGSDLALFLQTLSQIIEDPKDLTF*