Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0580024870.01.T01 | XP_003611846.1 | 98.468 | 457 | 7 | 0 | 1 | 457 | 1 | 457 | 0 | 939 |
| MsG0580024870.01.T02 | XP_003611846.1 | 98.504 | 401 | 6 | 0 | 1 | 401 | 57 | 457 | 0 | 820 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0580024870.01.T01 | O48716 | 65.47 | 362 | 121 | 4 | 62 | 422 | 63 | 421 | 1.56E-169 | 487 |
| MsG0580024870.01.T02 | O48716 | 65.47 | 362 | 121 | 4 | 6 | 366 | 63 | 421 | 1.40E-170 | 488 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0580024870.01.T01 | G7K9G1 | 98.468 | 457 | 7 | 0 | 1 | 457 | 1 | 457 | 0.0 | 939 |
| MsG0580024870.01.T02 | G7K9G1 | 98.504 | 401 | 6 | 0 | 1 | 401 | 57 | 457 | 0.0 | 820 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0580024870.01.T01 | MTR_5g018520 | 98.468 | 457 | 7 | 0 | 1 | 457 | 1 | 457 | 0.0 | 939 |
| MsG0580024870.01.T01 | MTR_1g021590 | 65.840 | 363 | 120 | 4 | 62 | 422 | 74 | 434 | 7.47e-175 | 498 |
| MsG0580024870.01.T01 | MTR_4g068457 | 57.743 | 381 | 135 | 5 | 69 | 423 | 80 | 460 | 2.74e-155 | 450 |
| MsG0580024870.01.T01 | MTR_4g106480 | 41.176 | 340 | 179 | 6 | 99 | 419 | 59 | 396 | 5.55e-77 | 246 |
| MsG0580024870.01.T01 | MTR_5g035980 | 36.272 | 397 | 201 | 8 | 75 | 420 | 49 | 444 | 6.42e-77 | 247 |
| MsG0580024870.01.T01 | MTR_3g078380 | 39.481 | 347 | 174 | 10 | 102 | 419 | 70 | 409 | 5.50e-75 | 241 |
| MsG0580024870.01.T01 | MTR_4g104410 | 40.719 | 334 | 176 | 8 | 99 | 419 | 39 | 363 | 4.74e-74 | 237 |
| MsG0580024870.01.T01 | MTR_2g060070 | 40.673 | 327 | 179 | 7 | 98 | 419 | 65 | 381 | 1.10e-73 | 238 |
| MsG0580024870.01.T01 | MTR_8g089650 | 40.000 | 345 | 185 | 9 | 100 | 427 | 100 | 439 | 4.85e-72 | 234 |
| MsG0580024870.01.T01 | MTR_3g110185 | 37.596 | 391 | 210 | 13 | 52 | 420 | 32 | 410 | 2.38e-71 | 241 |
| MsG0580024870.01.T01 | MTR_2g101410 | 34.704 | 389 | 215 | 11 | 69 | 433 | 50 | 423 | 7.14e-65 | 215 |
| MsG0580024870.01.T01 | MTR_4g119620 | 25.778 | 225 | 142 | 7 | 206 | 422 | 119 | 326 | 3.74e-14 | 73.6 |
| MsG0580024870.01.T01 | MTR_7g086360 | 28.421 | 190 | 120 | 8 | 199 | 381 | 89 | 269 | 1.13e-13 | 72.4 |
| MsG0580024870.01.T01 | MTR_8g032850 | 23.478 | 230 | 145 | 5 | 136 | 365 | 698 | 896 | 5.82e-13 | 71.6 |
| MsG0580024870.01.T01 | MTR_4g123597 | 23.588 | 301 | 193 | 11 | 97 | 367 | 403 | 696 | 6.64e-11 | 65.1 |
| MsG0580024870.01.T02 | MTR_5g018520 | 98.504 | 401 | 6 | 0 | 1 | 401 | 57 | 457 | 0.0 | 820 |
| MsG0580024870.01.T02 | MTR_1g021590 | 65.840 | 363 | 120 | 4 | 6 | 366 | 74 | 434 | 5.58e-176 | 499 |
| MsG0580024870.01.T02 | MTR_4g068457 | 57.743 | 381 | 135 | 5 | 13 | 367 | 80 | 460 | 1.63e-156 | 451 |
| MsG0580024870.01.T02 | MTR_5g035980 | 36.272 | 397 | 201 | 8 | 19 | 364 | 49 | 444 | 6.28e-78 | 248 |
| MsG0580024870.01.T02 | MTR_4g106480 | 41.176 | 340 | 179 | 6 | 43 | 363 | 59 | 396 | 7.59e-78 | 246 |
| MsG0580024870.01.T02 | MTR_3g078380 | 39.481 | 347 | 174 | 10 | 46 | 363 | 70 | 409 | 1.02e-75 | 241 |
| MsG0580024870.01.T02 | MTR_4g104410 | 40.719 | 334 | 176 | 8 | 43 | 363 | 39 | 363 | 7.53e-75 | 237 |
| MsG0580024870.01.T02 | MTR_2g060070 | 40.426 | 329 | 181 | 7 | 42 | 365 | 65 | 383 | 1.78e-74 | 238 |
| MsG0580024870.01.T02 | MTR_8g089650 | 40.419 | 334 | 180 | 8 | 44 | 363 | 100 | 428 | 3.01e-73 | 236 |
| MsG0580024870.01.T02 | MTR_3g110185 | 38.032 | 376 | 201 | 12 | 9 | 364 | 47 | 410 | 5.61e-72 | 241 |
| MsG0580024870.01.T02 | MTR_2g101410 | 34.794 | 388 | 214 | 11 | 13 | 376 | 50 | 422 | 1.09e-65 | 216 |
| MsG0580024870.01.T02 | MTR_4g119620 | 25.778 | 225 | 142 | 7 | 150 | 366 | 119 | 326 | 2.31e-14 | 73.9 |
| MsG0580024870.01.T02 | MTR_7g086360 | 28.571 | 189 | 121 | 7 | 143 | 325 | 89 | 269 | 7.08e-14 | 72.8 |
| MsG0580024870.01.T02 | MTR_8g032850 | 23.478 | 230 | 145 | 5 | 80 | 309 | 698 | 896 | 5.93e-13 | 71.2 |
| MsG0580024870.01.T02 | MTR_4g123597 | 22.924 | 301 | 195 | 10 | 41 | 311 | 403 | 696 | 5.34e-11 | 65.1 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0580024870.01.T01 | AT3G50390 | 58.881 | 411 | 143 | 4 | 41 | 425 | 20 | 430 | 5.92e-171 | 489 |
| MsG0580024870.01.T01 | AT2G26490 | 65.470 | 362 | 121 | 4 | 62 | 422 | 63 | 421 | 1.59e-170 | 487 |
| MsG0580024870.01.T01 | AT3G18950 | 58.961 | 385 | 144 | 5 | 47 | 424 | 92 | 469 | 2.18e-161 | 464 |
| MsG0580024870.01.T01 | AT1G49450 | 58.090 | 377 | 144 | 3 | 62 | 424 | 95 | 471 | 1.73e-156 | 452 |
| MsG0580024870.01.T01 | AT4G34380 | 52.500 | 440 | 191 | 3 | 12 | 433 | 31 | 470 | 3.24e-154 | 447 |
| MsG0580024870.01.T01 | AT1G47610 | 61.988 | 342 | 120 | 6 | 84 | 419 | 11 | 348 | 4.40e-145 | 418 |
| MsG0580024870.01.T01 | AT1G24130 | 42.149 | 363 | 183 | 6 | 81 | 420 | 53 | 411 | 3.36e-93 | 288 |
| MsG0580024870.01.T01 | AT3G51930 | 44.706 | 340 | 163 | 10 | 98 | 419 | 62 | 394 | 1.36e-81 | 258 |
| MsG0580024870.01.T01 | AT1G24530 | 40.599 | 367 | 191 | 9 | 63 | 419 | 54 | 403 | 1.58e-80 | 256 |
| MsG0580024870.01.T01 | AT5G50120 | 37.127 | 369 | 204 | 9 | 77 | 419 | 18 | 384 | 1.01e-77 | 247 |
| MsG0580024870.01.T01 | AT3G49660 | 28.194 | 227 | 134 | 7 | 204 | 421 | 110 | 316 | 4.46e-20 | 91.3 |
| MsG0580024870.01.T01 | AT3G49180 | 28.780 | 205 | 116 | 8 | 203 | 385 | 116 | 312 | 7.47e-13 | 70.5 |
| MsG0580024870.01.T01 | AT5G49200 | 28.251 | 223 | 132 | 7 | 206 | 423 | 130 | 329 | 1.82e-12 | 69.3 |
| MsG0580024870.01.T01 | AT5G50230 | 31.214 | 173 | 101 | 9 | 222 | 387 | 325 | 486 | 7.06e-12 | 67.8 |
| MsG0580024870.01.T02 | AT3G50390 | 60.714 | 392 | 128 | 4 | 4 | 369 | 39 | 430 | 9.37e-172 | 488 |
| MsG0580024870.01.T02 | AT2G26490 | 65.470 | 362 | 121 | 4 | 6 | 366 | 63 | 421 | 1.43e-171 | 488 |
| MsG0580024870.01.T02 | AT3G18950 | 60.270 | 370 | 139 | 4 | 6 | 368 | 101 | 469 | 4.24e-161 | 461 |
| MsG0580024870.01.T02 | AT1G49450 | 58.621 | 377 | 142 | 4 | 6 | 368 | 95 | 471 | 2.46e-157 | 452 |
| MsG0580024870.01.T02 | AT4G34380 | 57.069 | 389 | 149 | 3 | 7 | 377 | 82 | 470 | 4.20e-155 | 447 |
| MsG0580024870.01.T02 | AT1G47610 | 61.988 | 342 | 120 | 6 | 28 | 363 | 11 | 348 | 4.28e-146 | 419 |
| MsG0580024870.01.T02 | AT1G24130 | 42.192 | 365 | 184 | 6 | 23 | 364 | 51 | 411 | 3.85e-94 | 288 |
| MsG0580024870.01.T02 | AT3G51930 | 44.315 | 343 | 166 | 10 | 42 | 366 | 62 | 397 | 1.59e-82 | 259 |
| MsG0580024870.01.T02 | AT1G24530 | 40.599 | 367 | 191 | 9 | 7 | 363 | 54 | 403 | 1.22e-81 | 256 |
| MsG0580024870.01.T02 | AT5G50120 | 39.193 | 347 | 183 | 9 | 43 | 363 | 40 | 384 | 8.45e-79 | 248 |
| MsG0580024870.01.T02 | AT3G49660 | 28.194 | 227 | 134 | 7 | 148 | 365 | 110 | 316 | 1.22e-20 | 92.0 |
| MsG0580024870.01.T02 | AT3G49180 | 28.780 | 205 | 116 | 8 | 147 | 329 | 116 | 312 | 3.77e-13 | 71.2 |
| MsG0580024870.01.T02 | AT5G49200 | 28.251 | 223 | 132 | 7 | 150 | 367 | 130 | 329 | 1.81e-12 | 68.9 |
| MsG0580024870.01.T02 | AT5G50230 | 31.214 | 173 | 101 | 9 | 166 | 331 | 325 | 486 | 3.74e-12 | 68.2 |
Find 79 sgRNAs with CRISPR-Local
Find 106 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTGGGTCCGCGAAACGAATT+TGG | 0.172980 | 5:-11067908 | MsG0580024870.01.T01:CDS |
| CAGATGGGTTGGTTAATTAT+TGG | 0.246534 | 5:-11067927 | MsG0580024870.01.T01:CDS |
| AGATGGGTTGGTTAATTATT+GGG | 0.277083 | 5:-11067926 | MsG0580024870.01.T01:CDS |
| CACGAATTCTTCCATCTTGA+TGG | 0.300818 | 5:+11068421 | None:intergenic |
| GCGCTAGTTGTTGGATTTGA+TGG | 0.320133 | 5:-11068114 | MsG0580024870.01.T01:CDS |
| CTGATGGAACAGTTAAGATT+TGG | 0.339996 | 5:-11068071 | MsG0580024870.01.T01:CDS |
| AGCGTTCATGGTAGAAGATT+TGG | 0.348370 | 5:-11068828 | MsG0580024870.01.T01:CDS |
| GCTGGAAGTTTGGTGTTTAG+TGG | 0.363986 | 5:-11067832 | MsG0580024870.01.T01:CDS |
| CTTAACCTTCCAAACCTTAA+CGG | 0.368065 | 5:+11067636 | None:intergenic |
| GCTGTTAACGCGCTAGTTGT+TGG | 0.371527 | 5:-11068123 | MsG0580024870.01.T01:CDS |
| CGTTAAGGTTTGGAAGGTTA+AGG | 0.372459 | 5:-11067635 | MsG0580024870.01.T01:CDS |
| TTGGATGAAGGAAGCGTTCA+TGG | 0.378471 | 5:-11068840 | MsG0580024870.01.T01:CDS |
| ATAGTAAGAACATTCGTGTT+TGG | 0.398908 | 5:-11068530 | MsG0580024870.01.T01:CDS |
| TTTGGCCGCGGCTGGAAGTT+TGG | 0.405292 | 5:-11067842 | MsG0580024870.01.T01:CDS |
| AACTGTTCCATCAGCTGAAC+CGG | 0.408763 | 5:+11068080 | None:intergenic |
| AAGAAAAGGACATACATTCT+TGG | 0.413523 | 5:-11068859 | MsG0580024870.01.T01:CDS |
| GCGGGGTTTAAATCAAATAG+TGG | 0.428551 | 5:-11068489 | MsG0580024870.01.T01:CDS |
| TGTTGGTGAGTCTGTTGTCC+GGG | 0.430761 | 5:+11067601 | None:intergenic |
| AAGATGGAAGAATTCGTGTT+TGG | 0.431512 | 5:-11068416 | MsG0580024870.01.T01:CDS |
| TCTAGCGAAGAAGCTCTTGT+TGG | 0.434681 | 5:-11068624 | MsG0580024870.01.T01:CDS |
| TGGATAAGTCCGTTAAGGTT+TGG | 0.439042 | 5:-11067645 | MsG0580024870.01.T01:CDS |
| CGCGGGTTCTTCAGATGGGT+TGG | 0.443550 | 5:-11067938 | MsG0580024870.01.T01:CDS |
| CATTAATTTACTCTGCTTCG+TGG | 0.450825 | 5:-11068215 | MsG0580024870.01.T01:CDS |
| CACTAAGCCGTGGTGCTTGT+TGG | 0.459647 | 5:+11067584 | None:intergenic |
| GAGTTTGGATAAGTCCGTTA+AGG | 0.459889 | 5:-11067650 | MsG0580024870.01.T01:CDS |
| AGTTGTTGGATTTGATGGTT+TGG | 0.475802 | 5:-11068109 | MsG0580024870.01.T01:CDS |
| GTTAAAGCAATTGTTATAGC+CGG | 0.480212 | 5:-11068462 | MsG0580024870.01.T01:CDS |
| GGCTCATTAGTTCGCGAAGA+AGG | 0.482321 | 5:-11068603 | MsG0580024870.01.T01:CDS |
| TGATGTTACACGAGCGAAAG+TGG | 0.486083 | 5:-11067687 | MsG0580024870.01.T01:CDS |
| ACGAAAGATTTATTATATAC+CGG | 0.487740 | 5:-11068558 | MsG0580024870.01.T01:CDS |
| CTAACCTCGACATAATTACT+CGG | 0.490121 | 5:+11068309 | None:intergenic |
| TTATACGCGGGTTCTTCAGA+TGG | 0.490563 | 5:-11067943 | MsG0580024870.01.T01:CDS |
| GAATTATCTGATGCCATTTG+AGG | 0.496007 | 5:+11068711 | None:intergenic |
| GCTTTAGCATTAAATTCTGA+TGG | 0.496274 | 5:-11067973 | MsG0580024870.01.T01:CDS |
| TTGATATAGTTTCTTAGCGT+AGG | 0.496692 | 5:+11068345 | None:intergenic |
| TTGTTGGTGAGTCTGTTGTC+CGG | 0.496835 | 5:+11067600 | None:intergenic |
| TTTCGCAACGACGACACTCT+AGG | 0.499238 | 5:+11067544 | None:intergenic |
| AATGTTCTTACTATCAGAAC+CGG | 0.502687 | 5:+11068539 | None:intergenic |
| ATGGAACAGTTAAGATTTGG+AGG | 0.511800 | 5:-11068068 | MsG0580024870.01.T01:CDS |
| TATACGCGGGTTCTTCAGAT+GGG | 0.520164 | 5:-11067942 | MsG0580024870.01.T01:CDS |
| GTTTAGTGGTTCTGCTGACA+TGG | 0.524510 | 5:-11067818 | MsG0580024870.01.T01:CDS |
| TCGGTGTTGAGTGGACATAC+TGG | 0.526072 | 5:-11067748 | MsG0580024870.01.T01:CDS |
| AATTCTTCCATCTTGATGGC+CGG | 0.527095 | 5:+11068425 | None:intergenic |
| GGTGAAAGAGATGCATCATA+AGG | 0.527744 | 5:+11068687 | None:intergenic |
| GGACATACATTCTTGGATGA+AGG | 0.533411 | 5:-11068852 | MsG0580024870.01.T01:CDS |
| ATGACAGGTTCATCAAGAAA+AGG | 0.533468 | 5:-11068873 | MsG0580024870.01.T01:CDS |
| GAAGTGTCTCGCTGCTGAGA+AGG | 0.534093 | 5:-11067719 | MsG0580024870.01.T01:CDS |
| AGTGTTCCAAATTCGTTTCG+CGG | 0.534827 | 5:+11067902 | None:intergenic |
| AGGCGTGAGATGCAAGGAAA+AGG | 0.536160 | 5:-11068048 | MsG0580024870.01.T01:CDS |
| ACAATAATATTAGCAATGAC+AGG | 0.547784 | 5:-11068888 | None:intergenic |
| ACCTCATTTAGATCCTCAAA+TGG | 0.550033 | 5:-11068724 | MsG0580024870.01.T01:CDS |
| TAAGTCCGTTAAGGTTTGGA+AGG | 0.550401 | 5:-11067641 | MsG0580024870.01.T01:CDS |
| ATTCTCACCGGCCATCAAGA+TGG | 0.551158 | 5:-11068432 | MsG0580024870.01.T01:CDS |
| GCTTCTTCGTTAACATGCCA+TGG | 0.551302 | 5:+11068651 | None:intergenic |
| ATTAATTTACTCTGCTTCGT+GGG | 0.556246 | 5:-11068214 | MsG0580024870.01.T01:CDS |
| CTTTAGCATTAAATTCTGAT+GGG | 0.559160 | 5:-11067972 | MsG0580024870.01.T01:CDS |
| GTTGGTGAGTCTGTTGTCCG+GGG | 0.568340 | 5:+11067602 | None:intergenic |
| TTTGAGGGGTCATAAATTGG+CGG | 0.571842 | 5:-11067872 | MsG0580024870.01.T01:CDS |
| TAATGAACATACATGTATCT+CGG | 0.572658 | 5:-11067767 | MsG0580024870.01.T01:CDS |
| GTTAAGGAGAATGCGGCCCC+CGG | 0.579882 | 5:-11067619 | MsG0580024870.01.T01:CDS |
| ATTTGGAGGCGTGAGATGCA+AGG | 0.595397 | 5:-11068054 | MsG0580024870.01.T01:CDS |
| GCCGGTGAGAAGATTCTCAC+CGG | 0.607983 | 5:-11068444 | MsG0580024870.01.T01:CDS |
| ACATGTATCTCGGTGTTGAG+TGG | 0.614325 | 5:-11067757 | MsG0580024870.01.T01:CDS |
| CACCATTATCAAAATCACCA+TGG | 0.623890 | 5:-11068668 | MsG0580024870.01.T01:CDS |
| TCAGCAGCGAGACACTTCAC+CGG | 0.627369 | 5:+11067724 | None:intergenic |
| GCCGGTGAGAATCTTCTCAC+CGG | 0.635432 | 5:+11068443 | None:intergenic |
| GCCATTTGAGGATCTAAATG+AGG | 0.650281 | 5:+11068723 | None:intergenic |
| TTGGAAGGTTAAGGAGAATG+CGG | 0.656068 | 5:-11067626 | MsG0580024870.01.T01:CDS |
| CCACGGCTTAGTGTTAGTAG+TGG | 0.656777 | 5:-11067574 | MsG0580024870.01.T01:CDS |
| TCTTAGCGTAGGCAATGTCG+CGG | 0.671167 | 5:+11068356 | None:intergenic |
| AAACACCAAACTTCCAGCCG+CGG | 0.671806 | 5:+11067837 | None:intergenic |
| AAAATCAAAAGGAATTTGCG+GGG | 0.680244 | 5:-11068506 | MsG0580024870.01.T01:CDS |
| CTGACATGGCAATTTGTGTG+TGG | 0.680275 | 5:-11067804 | MsG0580024870.01.T01:CDS |
| GTTGAGTGGACATACTGGAC+CGG | 0.680739 | 5:-11067743 | MsG0580024870.01.T01:CDS |
| GAAACCGAGTAATTATGTCG+AGG | 0.699362 | 5:-11068313 | MsG0580024870.01.T01:CDS |
| TTGGTGAGTCTGTTGTCCGG+GGG | 0.702826 | 5:+11067603 | None:intergenic |
| AGACTCACCAACAAGCACCA+CGG | 0.702962 | 5:-11067591 | MsG0580024870.01.T01:CDS |
| CCACTACTAACACTAAGCCG+TGG | 0.705574 | 5:+11067574 | None:intergenic |
| GAAACGAATTTGGAACACTG+TGG | 0.764210 | 5:-11067898 | MsG0580024870.01.T01:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ACGAAAGATTTATTATATAC+CGG | - | Chr5:11067837-11067856 | MsG0580024870.01.T01:CDS | 20.0% |
| ! | AAAAATCAAAAGGAATTTGC+GGG | - | Chr5:11067888-11067907 | MsG0580024870.01.T01:CDS | 25.0% |
| ! | CTTTAGCATTAAATTCTGAT+GGG | - | Chr5:11068423-11068442 | MsG0580024870.01.T01:CDS | 25.0% |
| ! | GAAAAATCAAAAGGAATTTG+CGG | - | Chr5:11067887-11067906 | MsG0580024870.01.T01:CDS | 25.0% |
| ! | TAATGAACATACATGTATCT+CGG | - | Chr5:11068628-11068647 | MsG0580024870.01.T01:CDS | 25.0% |
| AAAATCAAAAGGAATTTGCG+GGG | - | Chr5:11067889-11067908 | MsG0580024870.01.T01:CDS | 30.0% | |
| AAGAAAAGGACATACATTCT+TGG | - | Chr5:11067536-11067555 | MsG0580024870.01.T01:CDS | 30.0% | |
| AATGTTCTTACTATCAGAAC+CGG | + | Chr5:11067859-11067878 | None:intergenic | 30.0% | |
| ATAGTAAGAACATTCGTGTT+TGG | - | Chr5:11067865-11067884 | MsG0580024870.01.T01:CDS | 30.0% | |
| ATTAATTTACTCTGCTTCGT+GGG | - | Chr5:11068181-11068200 | MsG0580024870.01.T01:CDS | 30.0% | |
| GCTTTAGCATTAAATTCTGA+TGG | - | Chr5:11068422-11068441 | MsG0580024870.01.T01:CDS | 30.0% | |
| GTTAAAGCAATTGTTATAGC+CGG | - | Chr5:11067933-11067952 | MsG0580024870.01.T01:CDS | 30.0% | |
| TCGTGTTTGGAAAAATCAAA+AGG | - | Chr5:11067878-11067897 | MsG0580024870.01.T01:CDS | 30.0% | |
| TTGAAAAAAGACGAATTCGA+CGG | - | Chr5:11067594-11067613 | MsG0580024870.01.T01:CDS | 30.0% | |
| TTGATATAGTTTCTTAGCGT+AGG | + | Chr5:11068053-11068072 | None:intergenic | 30.0% | |
| !! | AATTTTGAGGGGTCATAAAT+TGG | - | Chr5:11068520-11068539 | MsG0580024870.01.T01:CDS | 30.0% |
| !! | AGATGGGTTGGTTAATTATT+GGG | - | Chr5:11068469-11068488 | MsG0580024870.01.T01:CDS | 30.0% |
| !! | GAAAGTGGATTTTGTATAGT+GGG | - | Chr5:11068723-11068742 | MsG0580024870.01.T01:CDS | 30.0% |
| !!! | TTTGATGGTTTGGTTTTTAC+CGG | - | Chr5:11068296-11068315 | MsG0580024870.01.T01:CDS | 30.0% |
| AAGATGGAAGAATTCGTGTT+TGG | - | Chr5:11067979-11067998 | MsG0580024870.01.T01:CDS | 35.0% | |
| ACCTCATTTAGATCCTCAAA+TGG | - | Chr5:11067671-11067690 | MsG0580024870.01.T01:CDS | 35.0% | |
| ATGACAGGTTCATCAAGAAA+AGG | - | Chr5:11067522-11067541 | MsG0580024870.01.T01:CDS | 35.0% | |
| ATGGAACAGTTAAGATTTGG+AGG | - | Chr5:11068327-11068346 | MsG0580024870.01.T01:CDS | 35.0% | |
| CACCATTATCAAAATCACCA+TGG | - | Chr5:11067727-11067746 | MsG0580024870.01.T01:CDS | 35.0% | |
| CATTAATTTACTCTGCTTCG+TGG | - | Chr5:11068180-11068199 | MsG0580024870.01.T01:CDS | 35.0% | |
| CTAACCTCGACATAATTACT+CGG | + | Chr5:11068089-11068108 | None:intergenic | 35.0% | |
| CTGATGGAACAGTTAAGATT+TGG | - | Chr5:11068324-11068343 | MsG0580024870.01.T01:CDS | 35.0% | |
| CTTAACCTTCCAAACCTTAA+CGG | + | Chr5:11068762-11068781 | None:intergenic | 35.0% | |
| ! | AGTTGTTGGATTTGATGGTT+TGG | - | Chr5:11068286-11068305 | MsG0580024870.01.T01:CDS | 35.0% |
| ! | GAAGACATCGTAATGTTTTG+TGG | - | Chr5:11068108-11068127 | MsG0580024870.01.T01:CDS | 35.0% |
| ! | GAATTATCTGATGCCATTTG+AGG | + | Chr5:11067687-11067706 | None:intergenic | 35.0% |
| ! | TGATGGGACATTTTTATACG+CGG | - | Chr5:11068439-11068458 | MsG0580024870.01.T01:CDS | 35.0% |
| ! | TTCGTGGGATAAGACTTTTA+AGG | - | Chr5:11068196-11068215 | MsG0580024870.01.T01:CDS | 35.0% |
| !! | CAGATGGGTTGGTTAATTAT+TGG | - | Chr5:11068468-11068487 | MsG0580024870.01.T01:CDS | 35.0% |
| !! | CGAAAGTGGATTTTGTATAG+TGG | - | Chr5:11068722-11068741 | MsG0580024870.01.T01:CDS | 35.0% |
| !! | GATTTTGTATAGTGGGAGTT+TGG | - | Chr5:11068730-11068749 | MsG0580024870.01.T01:CDS | 35.0% |
| !! | TAAATTGGCGGTTTTGTGTT+TGG | - | Chr5:11068535-11068554 | MsG0580024870.01.T01:CDS | 35.0% |
| !! | TGCCATGGTGATTTTGATAA+TGG | + | Chr5:11067732-11067751 | None:intergenic | 35.0% |
| !!! | GGGATAAGACTTTTAAGGTT+TGG | - | Chr5:11068201-11068220 | MsG0580024870.01.T01:CDS | 35.0% |
| !!! | GTGCATCAGTTGTTTTAACA+GGG | + | Chr5:11067653-11067672 | None:intergenic | 35.0% |
| AGCGTTCATGGTAGAAGATT+TGG | - | Chr5:11067567-11067586 | MsG0580024870.01.T01:CDS | 40.0% | |
| AGTGTTCCAAATTCGTTTCG+CGG | + | Chr5:11068496-11068515 | None:intergenic | 40.0% | |
| CACGAATTCTTCCATCTTGA+TGG | + | Chr5:11067977-11067996 | None:intergenic | 40.0% | |
| CGTTAAGGTTTGGAAGGTTA+AGG | - | Chr5:11068760-11068779 | MsG0580024870.01.T01:CDS | 40.0% | |
| GAAACCGAGTAATTATGTCG+AGG | - | Chr5:11068082-11068101 | MsG0580024870.01.T01:CDS | 40.0% | |
| GAGTTTGGATAAGTCCGTTA+AGG | - | Chr5:11068745-11068764 | MsG0580024870.01.T01:CDS | 40.0% | |
| GCCATTTGAGGATCTAAATG+AGG | + | Chr5:11067675-11067694 | None:intergenic | 40.0% | |
| GCGGGGTTTAAATCAAATAG+TGG | - | Chr5:11067906-11067925 | MsG0580024870.01.T01:CDS | 40.0% | |
| GGACATACATTCTTGGATGA+AGG | - | Chr5:11067543-11067562 | MsG0580024870.01.T01:CDS | 40.0% | |
| GGTGAAAGAGATGCATCATA+AGG | + | Chr5:11067711-11067730 | None:intergenic | 40.0% | |
| TAAGTCCGTTAAGGTTTGGA+AGG | - | Chr5:11068754-11068773 | MsG0580024870.01.T01:CDS | 40.0% | |
| TGGATAAGTCCGTTAAGGTT+TGG | - | Chr5:11068750-11068769 | MsG0580024870.01.T01:CDS | 40.0% | |
| TTGGAAGGTTAAGGAGAATG+CGG | - | Chr5:11068769-11068788 | MsG0580024870.01.T01:CDS | 40.0% | |
| TTTGAGGGGTCATAAATTGG+CGG | - | Chr5:11068523-11068542 | MsG0580024870.01.T01:CDS | 40.0% | |
| ! | AATTCTTCCATCTTGATGGC+CGG | + | Chr5:11067973-11067992 | None:intergenic | 40.0% |
| ! | GAAACGAATTTGGAACACTG+TGG | - | Chr5:11068497-11068516 | MsG0580024870.01.T01:CDS | 40.0% |
| ! | GAACACTGTGGAATTTTGAG+GGG | - | Chr5:11068509-11068528 | MsG0580024870.01.T01:CDS | 40.0% |
| ! | GATGGGACATTTTTATACGC+GGG | - | Chr5:11068440-11068459 | MsG0580024870.01.T01:CDS | 40.0% |
| ! | GGAACACTGTGGAATTTTGA+GGG | - | Chr5:11068508-11068527 | MsG0580024870.01.T01:CDS | 40.0% |
| ! | TGGAACACTGTGGAATTTTG+AGG | - | Chr5:11068507-11068526 | MsG0580024870.01.T01:CDS | 40.0% |
| !!! | GGTGCATCAGTTGTTTTAAC+AGG | + | Chr5:11067654-11067673 | None:intergenic | 40.0% |
| !!! | TTAACAGGGCTGTTTTTTCG+AGG | + | Chr5:11067639-11067658 | None:intergenic | 40.0% |
| AACTGTTCCATCAGCTGAAC+CGG | + | Chr5:11068318-11068337 | None:intergenic | 45.0% | |
| AGTGTCGTCGTTGCGAAAAA+TGG | - | Chr5:11068856-11068875 | MsG0580024870.01.T01:CDS | 45.0% | |
| CTGACATGGCAATTTGTGTG+TGG | - | Chr5:11068591-11068610 | MsG0580024870.01.T01:CDS | 45.0% | |
| GCGCTAGTTGTTGGATTTGA+TGG | - | Chr5:11068281-11068300 | MsG0580024870.01.T01:CDS | 45.0% | |
| GCTTCTTCGTTAACATGCCA+TGG | + | Chr5:11067747-11067766 | None:intergenic | 45.0% | |
| GTGTCGTCGTTGCGAAAAAT+GGG | - | Chr5:11068857-11068876 | MsG0580024870.01.T01:CDS | 45.0% | |
| TATACGCGGGTTCTTCAGAT+GGG | - | Chr5:11068453-11068472 | MsG0580024870.01.T01:CDS | 45.0% | |
| TCTAGCGAAGAAGCTCTTGT+TGG | - | Chr5:11067771-11067790 | MsG0580024870.01.T01:CDS | 45.0% | |
| TGATGTTACACGAGCGAAAG+TGG | - | Chr5:11068708-11068727 | MsG0580024870.01.T01:CDS | 45.0% | |
| TTATACGCGGGTTCTTCAGA+TGG | - | Chr5:11068452-11068471 | MsG0580024870.01.T01:CDS | 45.0% | |
| ! | GTTTAGTGGTTCTGCTGACA+TGG | - | Chr5:11068577-11068596 | MsG0580024870.01.T01:CDS | 45.0% |
| ! | TTGTTGGTGAGTCTGTTGTC+CGG | + | Chr5:11068798-11068817 | None:intergenic | 45.0% |
| !! | ACATGTATCTCGGTGTTGAG+TGG | - | Chr5:11068638-11068657 | MsG0580024870.01.T01:CDS | 45.0% |
| !! | GCTGGAAGTTTGGTGTTTAG+TGG | - | Chr5:11068563-11068582 | MsG0580024870.01.T01:CDS | 45.0% |
| !! | TTGGATGAAGGAAGCGTTCA+TGG | - | Chr5:11067555-11067574 | MsG0580024870.01.T01:CDS | 45.0% |
| !!! | GTTTTTACCGGTTCAGCTGA+TGG | - | Chr5:11068308-11068327 | MsG0580024870.01.T01:CDS | 45.0% |
| AAACACCAAACTTCCAGCCG+CGG | + | Chr5:11068561-11068580 | None:intergenic | 50.0% | |
| AGACTCACCAACAAGCACCA+CGG | - | Chr5:11068804-11068823 | MsG0580024870.01.T01:CDS | 50.0% | |
| AGGCGTGAGATGCAAGGAAA+AGG | - | Chr5:11068347-11068366 | MsG0580024870.01.T01:CDS | 50.0% | |
| ATTCTCACCGGCCATCAAGA+TGG | - | Chr5:11067963-11067982 | MsG0580024870.01.T01:CDS | 50.0% | |
| CCACGGCTTAGTGTTAGTAG+TGG | - | Chr5:11068821-11068840 | MsG0580024870.01.T01:CDS | 50.0% | |
| CCACTACTAACACTAAGCCG+TGG | + | Chr5:11068824-11068843 | None:intergenic | 50.0% | |
| GCTGTTAACGCGCTAGTTGT+TGG | - | Chr5:11068272-11068291 | MsG0580024870.01.T01:CDS | 50.0% | |
| GGCTCATTAGTTCGCGAAGA+AGG | - | Chr5:11067792-11067811 | MsG0580024870.01.T01:CDS | 50.0% | |
| GTTGAGTGGACATACTGGAC+CGG | - | Chr5:11068652-11068671 | MsG0580024870.01.T01:CDS | 50.0% | |
| TCTTAGCGTAGGCAATGTCG+CGG | + | Chr5:11068042-11068061 | None:intergenic | 50.0% | |
| TTGGGTCCGCGAAACGAATT+TGG | - | Chr5:11068487-11068506 | MsG0580024870.01.T01:CDS | 50.0% | |
| TTTCGCAACGACGACACTCT+AGG | + | Chr5:11068854-11068873 | None:intergenic | 50.0% | |
| ! | ATTTGGAGGCGTGAGATGCA+AGG | - | Chr5:11068341-11068360 | MsG0580024870.01.T01:CDS | 50.0% |
| ! | TGTTGGTGAGTCTGTTGTCC+GGG | + | Chr5:11068797-11068816 | None:intergenic | 50.0% |
| !! | TCGGTGTTGAGTGGACATAC+TGG | - | Chr5:11068647-11068666 | MsG0580024870.01.T01:CDS | 50.0% |
| !!! | CAGGGCTGTTTTTTCGAGGA+TGG | + | Chr5:11067635-11067654 | None:intergenic | 50.0% |
| CACTAAGCCGTGGTGCTTGT+TGG | + | Chr5:11068814-11068833 | None:intergenic | 55.0% | |
| GCCGGTGAGAAGATTCTCAC+CGG | - | Chr5:11067951-11067970 | MsG0580024870.01.T01:CDS | 55.0% | |
| GCCGGTGAGAATCTTCTCAC+CGG | + | Chr5:11067955-11067974 | None:intergenic | 55.0% | |
| TCAGCAGCGAGACACTTCAC+CGG | + | Chr5:11068674-11068693 | None:intergenic | 55.0% | |
| TTGGTGAGTCTGTTGTCCGG+GGG | + | Chr5:11068795-11068814 | None:intergenic | 55.0% | |
| ! | GAAGTGTCTCGCTGCTGAGA+AGG | - | Chr5:11068676-11068695 | MsG0580024870.01.T01:CDS | 55.0% |
| ! | GTTGGTGAGTCTGTTGTCCG+GGG | + | Chr5:11068796-11068815 | None:intergenic | 55.0% |
| CGCGGGTTCTTCAGATGGGT+TGG | - | Chr5:11068457-11068476 | MsG0580024870.01.T01:CDS | 60.0% | |
| GTTAAGGAGAATGCGGCCCC+CGG | - | Chr5:11068776-11068795 | MsG0580024870.01.T01:CDS | 60.0% | |
| TTTGGCCGCGGCTGGAAGTT+TGG | - | Chr5:11068553-11068572 | MsG0580024870.01.T01:CDS | 60.0% | |
| ! | GTTTTGTGTTTGGCCGCGGC+TGG | - | Chr5:11068545-11068564 | MsG0580024870.01.T01:CDS | 60.0% |
| !! | GGCGGTTTTGTGTTTGGCCG+CGG | - | Chr5:11068541-11068560 | MsG0580024870.01.T01:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| Chr5 | gene | 11067522 | 11068895 | 11067522 | ID=MsG0580024870.01;Name=MsG0580024870.01 |
| Chr5 | mRNA | 11067522 | 11068895 | 11067522 | ID=MsG0580024870.01.T01;Parent=MsG0580024870.01;Name=MsG0580024870.01.T01;_AED=0.00;_eAED=0.00;_QI=0|-1|0|1|-1|1|1|0|457 |
| Chr5 | exon | 11067522 | 11068895 | 11067522 | ID=MsG0580024870.01.T01:exon:3084;Parent=MsG0580024870.01.T01 |
| Chr5 | CDS | 11067522 | 11068895 | 11067522 | ID=MsG0580024870.01.T01:cds;Parent=MsG0580024870.01.T01 |
| Chr5 | mRNA | 11067522 | 11068727 | 11067522 | ID=MsG0580024870.01.T02;Parent=MsG0580024870.01;Name=MsG0580024870.01.T02;_AED=0.06;_eAED=0.06;_QI=0|-1|0|1|-1|0|1|0|401 |
| Chr5 | exon | 11067522 | 11068727 | 11067522 | ID=MsG0580024870.01.T02:exon:3085;Parent=MsG0580024870.01.T02 |
| Chr5 | CDS | 11067522 | 11068727 | 11067522 | ID=MsG0580024870.01.T02:cds;Parent=MsG0580024870.01.T02 |
| Gene Sequence |
| Protein sequence |
