AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0180005282.01

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0180005282.01.T01 MTR_1g096320 97.879 330 7 0 1 330 353 682 0.0 687
MsG0180005282.01.T01 MTR_1g096320 97.879 330 7 0 1 330 347 676 0.0 687
MsG0180005282.01.T01 MTR_8g055930 65.854 328 111 1 3 330 121 447 7.11e-162 461
MsG0180005282.01.T01 MTR_8g055930 61.172 273 106 0 1 273 119 391 9.49e-123 359
MsG0180005282.01.T01 MTR_4g088785 48.882 313 142 8 23 329 146 446 2.30e-88 275
MsG0180005282.01.T01 MTR_2g013690 46.440 323 155 8 13 329 176 486 3.54e-79 252
MsG0180005282.01.T01 MTR_2g085170 48.736 277 132 7 43 315 227 497 1.07e-75 244
MsG0180005282.01.T01 MTR_8g085850 42.424 297 156 5 23 315 130 415 2.46e-75 240
MsG0180005282.01.T01 MTR_8g085850 42.424 297 156 5 23 315 139 424 3.18e-75 240
MsG0180005282.01.T01 MTR_8g085850 41.584 303 156 6 23 315 130 421 1.00e-72 234
MsG0180005282.01.T01 MTR_1g021670 41.297 293 149 6 43 331 175 448 5.43e-67 218
MsG0180005282.01.T01 MTR_2g019450 34.743 331 185 12 10 332 89 396 3.54e-45 160
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0180005282.01.T01 AT1G34550 81.515 330 61 0 1 330 379 708 0.0 577
MsG0180005282.01.T01 AT1G34550 81.515 330 61 0 1 330 285 614 0.0 575
MsG0180005282.01.T01 AT4G09630 77.273 330 75 0 1 330 354 683 0.0 565
MsG0180005282.01.T01 AT4G09630 77.273 330 75 0 1 330 339 668 0.0 564
MsG0180005282.01.T01 AT2G02910 64.000 325 105 2 6 330 124 436 5.89e-156 445
MsG0180005282.01.T01 AT2G02910 64.000 325 105 2 6 330 124 436 5.89e-156 445
MsG0180005282.01.T01 AT1G53040 47.157 299 147 7 23 316 166 458 2.42e-82 258
MsG0180005282.01.T01 AT1G53040 47.157 299 147 7 23 316 166 458 2.42e-82 258
MsG0180005282.01.T01 AT1G53040 47.157 299 147 7 23 316 166 458 9.53e-82 258
MsG0180005282.01.T01 AT1G53040 47.157 299 147 7 23 316 166 458 9.53e-82 258
MsG0180005282.01.T01 AT1G53040 47.157 299 147 7 23 316 166 458 9.53e-82 258
MsG0180005282.01.T01 AT1G28240 45.946 296 151 6 23 315 194 483 1.37e-78 251
MsG0180005282.01.T01 AT5G42660 44.027 293 141 7 43 331 168 441 5.31e-73 233
MsG0180005282.01.T01 AT4G38500 41.275 298 157 6 23 316 138 421 7.46e-69 224
MsG0180005282.01.T01 AT1G53040 44.262 244 129 5 23 262 166 406 2.64e-59 197
MsG0180005282.01.T01 AT5G46220 33.452 281 159 10 43 311 118 382 8.81e-36 135

Find 68 sgRNAs with CRISPR-Local

Find 179 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GCTGTGATTTCTTGCATATT+TGG 0.220282 1:-89608201 MsG0180005282.01.T01:CDS
CAAATTTGTTTAACTGTCTT+TGG 0.245123 1:-89605959 MsG0180005282.01.T01:CDS
GATCTGATGCATTAAATCTT+TGG 0.246268 1:+89606157 None:intergenic
TTAAGATGAAAAGGTTTATC+AGG 0.265814 1:+89605858 None:intergenic
TTTGTTCCAGGTATTCAATT+TGG 0.283085 1:-89606380 MsG0180005282.01.T01:intron
TTTGGTTGGATAGCAAATTA+AGG 0.290821 1:-89606362 MsG0180005282.01.T01:CDS
GAATGGGTTTCATTGGCTTT+TGG 0.293086 1:-89607517 MsG0180005282.01.T01:CDS
CTGCTTGAAAGAAGTTTGTT+TGG 0.324887 1:+89606135 None:intergenic
GGGCAAAATACCAAAGTTAT+TGG 0.329188 1:-89607447 MsG0180005282.01.T01:CDS
TTGGAAATTCTGATCGCTTA+AGG 0.334514 1:-89608182 MsG0180005282.01.T01:CDS
GCTTGATCCTTTACTCATCT+TGG 0.340928 1:-89606334 MsG0180005282.01.T01:CDS
CCTGATAGAATGGGTTTCAT+TGG 0.356637 1:-89607524 MsG0180005282.01.T01:CDS
TTCTAGTGGTTCTACAAGTT+GGG 0.367119 1:+89608461 None:intergenic
CCAGTGCTGGGTGAACCTTC+AGG 0.368245 1:+89608273 None:intergenic
CCATTACCGTCTTGGTGGCC+GGG 0.369914 1:+89608157 None:intergenic
CTCTGATGGCCAGCAAATCT+TGG 0.385269 1:+89608363 None:intergenic
ACCATTACCGTCTTGGTGGC+CGG 0.392397 1:+89608156 None:intergenic
CAATGGACGCCAAGATTTGC+TGG 0.411447 1:-89608372 MsG0180005282.01.T01:CDS
CCAATGAAACCCATTCTATC+AGG 0.415310 1:+89607524 None:intergenic
TTTCTAGTGGTTCTACAAGT+TGG 0.418314 1:+89608460 None:intergenic
CTGATAATAAAAGAGCCTTC+TGG 0.429165 1:+89605999 None:intergenic
CTCTCTCTTCTAAGCTCTGA+TGG 0.432099 1:+89608349 None:intergenic
TTGAACATATTAAGATGAAA+AGG 0.450047 1:+89605849 None:intergenic
TGACATGTCAAAACCAGTGC+TGG 0.459364 1:+89608260 None:intergenic
TTCCAGGTATTCAATTTGGT+TGG 0.469359 1:-89606376 MsG0180005282.01.T01:intron
AGGCCATCCACCTGATAGAA+TGG 0.470037 1:-89607534 MsG0180005282.01.T01:CDS
ACAATGCCGGTCATAGTGAT+TGG 0.470205 1:+89606272 None:intergenic
CAGTGCTGGGTGAACCTTCA+GGG 0.476397 1:+89608274 None:intergenic
AGTCGATGGGCCAATAACTT+TGG 0.477197 1:+89607437 None:intergenic
AAGATTAACCATTACCGTCT+TGG 0.490674 1:+89608149 None:intergenic
AGTTAAACAAATTTGACATA+GGG 0.492437 1:+89605967 None:intergenic
ATTTAGACTCACCTTGCAAA+GGG 0.496219 1:+89607410 None:intergenic
GAGTACTTCTTGTGGCGAAA+AGG 0.496351 1:-89606312 MsG0180005282.01.T01:CDS
CAGTTAAACAAATTTGACAT+AGG 0.504784 1:+89605966 None:intergenic
CATTACCGTCTTGGTGGCCG+GGG 0.511489 1:+89608158 None:intergenic
CCTGAAGGTTCACCCAGCAC+TGG 0.518825 1:-89608273 MsG0180005282.01.T01:CDS
GGCCATCCACCTGATAGAAT+GGG 0.523018 1:-89607533 MsG0180005282.01.T01:CDS
AGAGACAGAAGAGAAGCCAC+TGG 0.525810 1:-89608403 MsG0180005282.01.T01:CDS
ATTAACCATTACCGTCTTGG+TGG 0.526509 1:+89608152 None:intergenic
CAATATCCAATCACTATGAC+CGG 0.527077 1:-89606278 MsG0180005282.01.T01:CDS
AAGTACTCCAAGATGAGTAA+AGG 0.529195 1:+89606327 None:intergenic
ACTCGCCGCATATCATCATA+AGG 0.539232 1:+89607470 None:intergenic
ATACATATCAAAAGCTGAGA+AGG 0.545936 1:-89605887 MsG0180005282.01.T01:CDS
ATCTTTGGAGTCCATCAGCC+CGG 0.550209 1:+89606172 None:intergenic
TAGAAAGTCGAAAATTTGCA+AGG 0.555222 1:-89608443 MsG0180005282.01.T01:CDS
GATTTAGACTCACCTTGCAA+AGG 0.563892 1:+89607409 None:intergenic
TTCAGATCAGTCGTTTGTCA+AGG 0.566456 1:-89607616 MsG0180005282.01.T01:intron
CCTCTTCCCACACACAATGC+CGG 0.577412 1:+89606259 None:intergenic
TCATCTTGGAGTACTTCTTG+TGG 0.586142 1:-89606320 MsG0180005282.01.T01:CDS
TTCTGATCGCTTAAGGACCC+CGG 0.586256 1:-89608175 MsG0180005282.01.T01:CDS
AACCCATTCTATCAGGTGGA+TGG 0.594987 1:+89607531 None:intergenic
ATGAAACCCATTCTATCAGG+TGG 0.597834 1:+89607527 None:intergenic
GAGACAGAAGAGAAGCCACT+GGG 0.598841 1:-89608402 MsG0180005282.01.T01:CDS
CCGGCATTGTGTGTGGGAAG+AGG 0.599871 1:-89606259 MsG0180005282.01.T01:CDS
TATGATGATATGCGGCGAGT+GGG 0.607020 1:-89607467 MsG0180005282.01.T01:CDS
GTGCGTACACTTACTTCTGA+AGG 0.607524 1:-89607554 MsG0180005282.01.T01:CDS
CGTGATCAAAACATAAAATG+TGG 0.614081 1:-89608309 MsG0180005282.01.T01:CDS
GTTAAACAAATTTGACATAG+GGG 0.621127 1:+89605968 None:intergenic
ATCTACCTTATGATGATATG+CGG 0.627080 1:-89607475 MsG0180005282.01.T01:CDS
ACTATGACCGGCATTGTGTG+TGG 0.633165 1:-89606266 MsG0180005282.01.T01:CDS
AAGGACCCCGGCCACCAAGA+CGG 0.634619 1:-89608163 MsG0180005282.01.T01:intron
TTATGATGATATGCGGCGAG+TGG 0.642546 1:-89607468 MsG0180005282.01.T01:CDS
GACATGTCAAAACCAGTGCT+GGG 0.642812 1:+89608261 None:intergenic
GCAAAACTCAGCTGATCACG+AGG 0.653374 1:+89605912 None:intergenic
AGCCACTGGGAGTAGAACAA+TGG 0.657026 1:-89608389 MsG0180005282.01.T01:CDS
GTCCATTGTTCTACTCCCAG+TGG 0.663300 1:+89608387 None:intergenic
TGCAAGAAATCACAGCAATG+TGG 0.687595 1:+89608208 None:intergenic
CTATGACCGGCATTGTGTGT+GGG 0.689150 1:-89606265 MsG0180005282.01.T01:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! GAAAAAATATGCATATATTA+AGG + Chr1:89608259-89608278 None:intergenic 15.0%
!! TAGAAAATAAATGATAAGAA+AGG + Chr1:89607326-89607345 None:intergenic 15.0%
!! TTAATAATTGTCAAAATCAA+AGG + Chr1:89606936-89606955 None:intergenic 15.0%
!!! ATTTTGACAATTATTAATTG+GGG - Chr1:89606939-89606958 MsG0180005282.01.T01:intron 15.0%
!!! CTATTTTCTTAAATTATTAC+TGG - Chr1:89607049-89607068 MsG0180005282.01.T01:intron 15.0%
!!! GATTTTGACAATTATTAATT+GGG - Chr1:89606938-89606957 MsG0180005282.01.T01:intron 15.0%
!!! TGATTTTGACAATTATTAAT+TGG - Chr1:89606937-89606956 MsG0180005282.01.T01:intron 15.0%
!! AGTTAAACAAATTTGACATA+GGG + Chr1:89608334-89608353 None:intergenic 20.0%
!! ATAACTCTTAAAATCCAAAT+AGG - Chr1:89606573-89606592 MsG0180005282.01.T01:intron 20.0%
!! TATTTATTAGTCAACAAGTT+CGG + Chr1:89608222-89608241 None:intergenic 20.0%
!! TTCTTTATAAGTTACTTGTT+TGG - Chr1:89607765-89607784 MsG0180005282.01.T01:intron 20.0%
!! TTGAACATATTAAGATGAAA+AGG + Chr1:89608452-89608471 None:intergenic 20.0%
!!! AGTAAATTTTAAGACCTATT+TGG + Chr1:89606590-89606609 None:intergenic 20.0%
!!! ATAAAATGTGGTTTTGTTAA+AGG - Chr1:89606001-89606020 MsG0180005282.01.T01:CDS 20.0%
!!! ATCAACAATTTGAATTTTAC+CGG - Chr1:89608107-89608126 MsG0180005282.01.T01:intron 20.0%
!!! ATGTTTTGTTTCATTATTGT+TGG - Chr1:89606649-89606668 MsG0180005282.01.T01:intron 20.0%
!!! TACAAAAAATATGCTTTTCA+AGG + Chr1:89607493-89607512 None:intergenic 20.0%
!!! TTTTCAAAATAAGCTGAAAA+AGG - Chr1:89606479-89606498 MsG0180005282.01.T01:intron 20.0%
!!! TTTTCATCTTAATATGTTCA+AGG - Chr1:89608451-89608470 MsG0180005282.01.T01:CDS 20.0%
!!! TTTTTATTTTAAGACTCACA+TGG - Chr1:89606201-89606220 MsG0180005282.01.T01:CDS 20.0%
! AAATGCATAAGCATAAAAGT+TGG + Chr1:89607890-89607909 None:intergenic 25.0%
! CAGTTAAACAAATTTGACAT+AGG + Chr1:89608335-89608354 None:intergenic 25.0%
! GATATATGTACCTGAAATAT+AGG - Chr1:89607278-89607297 MsG0180005282.01.T01:intron 25.0%
! GTTAAACAAATTTGACATAG+GGG + Chr1:89608333-89608352 None:intergenic 25.0%
! TAAAAGTTGGACAAGAAAAA+AGG + Chr1:89607877-89607896 None:intergenic 25.0%
! TTAAGATGAAAAGGTTTATC+AGG + Chr1:89608443-89608462 None:intergenic 25.0%
! TTGCACTTCTTAAAATATTG+AGG - Chr1:89607435-89607454 MsG0180005282.01.T01:CDS 25.0%
!! AGAGAGAGAAAATTCATTTT+TGG - Chr1:89605964-89605983 MsG0180005282.01.T01:CDS 25.0%
!! ATCAGAATACACTATTTTGT+TGG + Chr1:89606239-89606258 None:intergenic 25.0%
!! CAAATTTGTTTAACTGTCTT+TGG - Chr1:89608339-89608358 MsG0180005282.01.T01:CDS 25.0%
!! TATTTTCTATGCAGTCAAAA+TGG - Chr1:89607337-89607356 MsG0180005282.01.T01:intron 25.0%
!! TCAACAATTTGAATTTTACC+GGG - Chr1:89608108-89608127 MsG0180005282.01.T01:intron 25.0%
!! TTTTACTATGAAACACTAAC+AGG + Chr1:89607374-89607393 None:intergenic 25.0%
!!! AAAAAATATGCTTTTCAAGG+AGG + Chr1:89607490-89607509 None:intergenic 25.0%
!!! ATTTCTTTGAAATTTGTTCC+AGG - Chr1:89607906-89607925 MsG0180005282.01.T01:intron 25.0%
!!! GATGTTTTAATCATGATTAC+TGG - Chr1:89606963-89606982 MsG0180005282.01.T01:intron 25.0%
!!! TGTTATTTTCCCTTTTTAGA+TGG - Chr1:89607535-89607554 MsG0180005282.01.T01:CDS 25.0%
AAACACCAAAAAGGAGTTTA+TGG + Chr1:89607727-89607746 None:intergenic 30.0%
AACACCAAAAAGGAGTTTAT+GGG + Chr1:89607726-89607745 None:intergenic 30.0%
ATACATATCAAAAGCTGAGA+AGG - Chr1:89608411-89608430 MsG0180005282.01.T01:CDS 30.0%
ATCTACCTTATGATGATATG+CGG - Chr1:89606823-89606842 MsG0180005282.01.T01:intron 30.0%
ATGATAAGTGCTTATGCTAT+AGG + Chr1:89606357-89606376 None:intergenic 30.0%
CGTGATCAAAACATAAAATG+TGG - Chr1:89605989-89606008 MsG0180005282.01.T01:CDS 30.0%
CTAAAAAGGGAAAATAACAG+AGG + Chr1:89607534-89607553 None:intergenic 30.0%
GATCTGATGCATTAAATCTT+TGG + Chr1:89608144-89608163 None:intergenic 30.0%
TAATCATGATTACTGGTAAG+TGG - Chr1:89606970-89606989 MsG0180005282.01.T01:intron 30.0%
TAATGAACCAAACACCAAAA+AGG + Chr1:89607736-89607755 None:intergenic 30.0%
TAGAAAGTCGAAAATTTGCA+AGG - Chr1:89605855-89605874 MsG0180005282.01.T01:CDS 30.0%
TATAGTTGCAAATAATGCCT+CGG - Chr1:89607213-89607232 MsG0180005282.01.T01:intron 30.0%
TCTACATGTTATCTACATGT+TGG - Chr1:89607074-89607093 MsG0180005282.01.T01:intron 30.0%
TTTGGTTGGATAGCAAATTA+AGG - Chr1:89607936-89607955 MsG0180005282.01.T01:intron 30.0%
TTTGTTCCAGGTATTCAATT+TGG - Chr1:89607918-89607937 MsG0180005282.01.T01:intron 30.0%
! AGAAGGCTCTTTTATTATCA+GGG - Chr1:89608301-89608320 MsG0180005282.01.T01:CDS 30.0%
! CTCAGTCTTTTTCTCTTAAA+TGG + Chr1:89606264-89606283 None:intergenic 30.0%
! TTCATTTTCCGCATCAATTT+AGG + Chr1:89607628-89607647 None:intergenic 30.0%
!! ACTGTGTTATTTAATCAGTG+TGG - Chr1:89607399-89607418 MsG0180005282.01.T01:intron 30.0%
!!! ATAAACTCCTTTTTGGTGTT+TGG - Chr1:89607726-89607745 MsG0180005282.01.T01:intron 30.0%
!!! CTGCTTTTCCTTATTTTCTT+GGG - Chr1:89607653-89607672 MsG0180005282.01.T01:intron 30.0%
!!! TCTGCTTTTCCTTATTTTCT+TGG - Chr1:89607652-89607671 MsG0180005282.01.T01:intron 30.0%
!!! TTCCTTATTTTCTTGGGTTT+CGG - Chr1:89607659-89607678 MsG0180005282.01.T01:intron 30.0%
AACTATATACCAAGAAGACG+TGG + Chr1:89607200-89607219 None:intergenic 35.0%
AAGATTAACCATTACCGTCT+TGG + Chr1:89606152-89606171 None:intergenic 35.0%
AAGCTGTCAATTTAACCATG+CGG + Chr1:89607561-89607580 None:intergenic 35.0%
AAGGTGAGTCTAAATCTGAT+TGG - Chr1:89606896-89606915 MsG0180005282.01.T01:intron 35.0%
AAGTACTCCAAGATGAGTAA+AGG + Chr1:89607974-89607993 None:intergenic 35.0%
AATTTAGGCAAGAAAGGATG+GGG + Chr1:89607613-89607632 None:intergenic 35.0%
ACATGTTATCTACATGTTGG+TGG - Chr1:89607077-89607096 MsG0180005282.01.T01:intron 35.0%
ACTAAGTTGTTTACCCAAAC+AGG + Chr1:89606328-89606347 None:intergenic 35.0%
ATCCAACCAAATTGAATACC+TGG + Chr1:89607927-89607946 None:intergenic 35.0%
ATTTAGACTCACCTTGCAAA+GGG + Chr1:89606891-89606910 None:intergenic 35.0%
CAAACGTCTTCATAAGTTTG+GGG - Chr1:89607158-89607177 MsG0180005282.01.T01:intron 35.0%
CAATATCCAATCACTATGAC+CGG - Chr1:89608020-89608039 MsG0180005282.01.T01:intron 35.0%
CAATTTAGGCAAGAAAGGAT+GGG + Chr1:89607614-89607633 None:intergenic 35.0%
CCAAACGTCTTCATAAGTTT+GGG - Chr1:89607157-89607176 MsG0180005282.01.T01:intron 35.0%
CTAAGTTGTTTACCCAAACA+GGG + Chr1:89606327-89606346 None:intergenic 35.0%
CTGATAATAAAAGAGCCTTC+TGG + Chr1:89608302-89608321 None:intergenic 35.0%
CTTGCAAGATCCTATATTTC+AGG + Chr1:89607291-89607310 None:intergenic 35.0%
CTTTCTTGCCTAAATTGATG+CGG - Chr1:89607617-89607636 MsG0180005282.01.T01:intron 35.0%
GCTGTGATTTCTTGCATATT+TGG - Chr1:89606097-89606116 MsG0180005282.01.T01:intron 35.0%
GGAATGTGAATACATAAGAC+TGG + Chr1:89607591-89607610 None:intergenic 35.0%
GGACAAGAAAAAAGGACAAT+CGG + Chr1:89607869-89607888 None:intergenic 35.0%
GGGCAAAATACCAAAGTTAT+TGG - Chr1:89606851-89606870 MsG0180005282.01.T01:intron 35.0%
TCAATTTAGGCAAGAAAGGA+TGG + Chr1:89607615-89607634 None:intergenic 35.0%
TCCAAACGTCTTCATAAGTT+TGG - Chr1:89607156-89607175 MsG0180005282.01.T01:intron 35.0%
TCTATGCAGTCAAAATGGTA+AGG - Chr1:89607342-89607361 MsG0180005282.01.T01:intron 35.0%
TGTTTGTGACAGTACTTCAT+AGG - Chr1:89607121-89607140 MsG0180005282.01.T01:intron 35.0%
TTCCAGGTATTCAATTTGGT+TGG - Chr1:89607922-89607941 MsG0180005282.01.T01:intron 35.0%
TTCCGAAACCCAAGAAAATA+AGG + Chr1:89607664-89607683 None:intergenic 35.0%
TTGGAAATTCTGATCGCTTA+AGG - Chr1:89606116-89606135 MsG0180005282.01.T01:intron 35.0%
! AAGACGTTTGGAATAAGTCA+CGG + Chr1:89607148-89607167 None:intergenic 35.0%
! CAGAAGGCTCTTTTATTATC+AGG - Chr1:89608300-89608319 MsG0180005282.01.T01:CDS 35.0%
! CTGCTTGAAAGAAGTTTGTT+TGG + Chr1:89608166-89608185 None:intergenic 35.0%
! GCAAATTTTCGACTTTCTAG+TGG + Chr1:89605854-89605873 None:intergenic 35.0%
! TTCTAGTGGTTCTACAAGTT+GGG + Chr1:89605840-89605859 None:intergenic 35.0%
! TTTCTAGTGGTTCTACAAGT+TGG + Chr1:89605841-89605860 None:intergenic 35.0%
!! ATGAAGTACTGTCACAAACA+TGG + Chr1:89607121-89607140 None:intergenic 35.0%
ACACCCCAAACTTATAAGAC+TGG + Chr1:89607239-89607258 None:intergenic 40.0%
ATGAAACCCATTCTATCAGG+TGG + Chr1:89606774-89606793 None:intergenic 40.0%
ATGAAAGTTCCACGTCTTCT+TGG - Chr1:89607188-89607207 MsG0180005282.01.T01:intron 40.0%
ATTAACCATTACCGTCTTGG+TGG + Chr1:89606149-89606168 None:intergenic 40.0%
ATTTAGGCAAGAAAGGATGG+GGG + Chr1:89607612-89607631 None:intergenic 40.0%
CAAGAAAAAAGGACAATCGG+TGG + Chr1:89607866-89607885 None:intergenic 40.0%
CCAATGAAACCCATTCTATC+AGG + Chr1:89606777-89606796 None:intergenic 40.0%
CCCAAACTTATGAAGACGTT+TGG + Chr1:89607160-89607179 None:intergenic 40.0%
CGCATCAATTTAGGCAAGAA+AGG + Chr1:89607619-89607638 None:intergenic 40.0%
CTTCTGGTACATCTGTCAAA+AGG + Chr1:89608286-89608305 None:intergenic 40.0%
GATTTAGACTCACCTTGCAA+AGG + Chr1:89606892-89606911 None:intergenic 40.0%
GCTTGATCCTTTACTCATCT+TGG - Chr1:89607964-89607983 MsG0180005282.01.T01:intron 40.0%
TGCAAAGGGAAAAAGTCGAT+GGG + Chr1:89606877-89606896 None:intergenic 40.0%
TGCAAGAAATCACAGCAATG+TGG + Chr1:89606093-89606112 None:intergenic 40.0%
TTCAGATCAGTCGTTTGTCA+AGG - Chr1:89606682-89606701 MsG0180005282.01.T01:intron 40.0%
TTCATTTCAGCTCGTGTGTT+TGG - Chr1:89606171-89606190 MsG0180005282.01.T01:CDS 40.0%
TTGCAAAGGGAAAAAGTCGA+TGG + Chr1:89606878-89606897 None:intergenic 40.0%
! CAGACCCATAAACTCCTTTT+TGG - Chr1:89607719-89607738 MsG0180005282.01.T01:intron 40.0%
! CCTGATAGAATGGGTTTCAT+TGG - Chr1:89606774-89606793 MsG0180005282.01.T01:intron 40.0%
! CTTTTGACAGATGTACCAGA+AGG - Chr1:89608284-89608303 MsG0180005282.01.T01:CDS 40.0%
! TCATCTTGGAGTACTTCTTG+TGG - Chr1:89607978-89607997 MsG0180005282.01.T01:intron 40.0%
! TCGGCCAGTCTTATAAGTTT+GGG - Chr1:89607232-89607251 MsG0180005282.01.T01:intron 40.0%
! TTTGAATTTTACCGGGCTGA+TGG - Chr1:89608115-89608134 MsG0180005282.01.T01:intron 40.0%
!! ATCGACTTTTTCCCTTTGCA+AGG - Chr1:89606877-89606896 MsG0180005282.01.T01:intron 40.0%
!!! CATTGGCTTTTGGAAGTTAG+TGG - Chr1:89606791-89606810 MsG0180005282.01.T01:intron 40.0%
!!! GAATGGGTTTCATTGGCTTT+TGG - Chr1:89606781-89606800 MsG0180005282.01.T01:intron 40.0%
AACCATGCGGCCATCTAAAA+AGG + Chr1:89607548-89607567 None:intergenic 45.0%
AACCCATTCTATCAGGTGGA+TGG + Chr1:89606770-89606789 None:intergenic 45.0%
ACAATGCCGGTCATAGTGAT+TGG + Chr1:89608029-89608048 None:intergenic 45.0%
ACCATGCGGCCATCTAAAAA+GGG + Chr1:89607547-89607566 None:intergenic 45.0%
ACTCGCCGCATATCATCATA+AGG + Chr1:89606831-89606850 None:intergenic 45.0%
AGTCGATGGGCCAATAACTT+TGG + Chr1:89606864-89606883 None:intergenic 45.0%
GACATGTCAAAACCAGTGCT+GGG + Chr1:89606040-89606059 None:intergenic 45.0%
GAGTACTTCTTGTGGCGAAA+AGG - Chr1:89607986-89608005 MsG0180005282.01.T01:intron 45.0%
GTGCGTACACTTACTTCTGA+AGG - Chr1:89606744-89606763 MsG0180005282.01.T01:intron 45.0%
TACATCCTCTTGCTGCAATG+AGG + Chr1:89607696-89607715 None:intergenic 45.0%
TATGATGATATGCGGCGAGT+GGG - Chr1:89606831-89606850 MsG0180005282.01.T01:intron 45.0%
TGACATGTCAAAACCAGTGC+TGG + Chr1:89606041-89606060 None:intergenic 45.0%
TTATGATGATATGCGGCGAG+TGG - Chr1:89606830-89606849 MsG0180005282.01.T01:intron 45.0%
! CAAACTTATAAGACTGGCCG+AGG + Chr1:89607233-89607252 None:intergenic 45.0%
! CCTGATCTAAGACCCTGTTT+GGG - Chr1:89606312-89606331 MsG0180005282.01.T01:CDS 45.0%
! CGGCCAGTCTTATAAGTTTG+GGG - Chr1:89607233-89607252 MsG0180005282.01.T01:intron 45.0%
! CTCGGCCAGTCTTATAAGTT+TGG - Chr1:89607231-89607250 MsG0180005282.01.T01:intron 45.0%
! CTCTCTCTTCTAAGCTCTGA+TGG + Chr1:89605952-89605971 None:intergenic 45.0%
! GTTTAAAGCTCCCTCCATAG+TGG + Chr1:89607844-89607863 None:intergenic 45.0%
! TCCTGATCTAAGACCCTGTT+TGG - Chr1:89606311-89606330 MsG0180005282.01.T01:CDS 45.0%
!!! GGTTTTGTTAAAGGCCCTGA+AGG - Chr1:89606010-89606029 MsG0180005282.01.T01:intron 45.0%
ACTATGACCGGCATTGTGTG+TGG - Chr1:89608032-89608051 MsG0180005282.01.T01:intron 50.0%
AGAGACAGAAGAGAAGCCAC+TGG - Chr1:89605895-89605914 MsG0180005282.01.T01:CDS 50.0%
AGCCACTGGGAGTAGAACAA+TGG - Chr1:89605909-89605928 MsG0180005282.01.T01:CDS 50.0%
AGGCCATCCACCTGATAGAA+TGG - Chr1:89606764-89606783 MsG0180005282.01.T01:intron 50.0%
CAAGTCCTCATTGCAGCAAG+AGG - Chr1:89607688-89607707 MsG0180005282.01.T01:intron 50.0%
CAATGGACGCCAAGATTTGC+TGG - Chr1:89605926-89605945 MsG0180005282.01.T01:CDS 50.0%
CCCAAACAGGGTCTTAGATC+AGG + Chr1:89606315-89606334 None:intergenic 50.0%
CTATGACCGGCATTGTGTGT+GGG - Chr1:89608033-89608052 MsG0180005282.01.T01:intron 50.0%
CTCTGATGGCCAGCAAATCT+TGG + Chr1:89605938-89605957 None:intergenic 50.0%
GAGACAGAAGAGAAGCCACT+GGG - Chr1:89605896-89605915 MsG0180005282.01.T01:CDS 50.0%
GCAAAACTCAGCTGATCACG+AGG + Chr1:89608389-89608408 None:intergenic 50.0%
GGCCATCCACCTGATAGAAT+GGG - Chr1:89606765-89606784 MsG0180005282.01.T01:intron 50.0%
GTCCATTGTTCTACTCCCAG+TGG + Chr1:89605914-89605933 None:intergenic 50.0%
TAAAGCTCCCTCCATAGTGG+CGG + Chr1:89607841-89607860 None:intergenic 50.0%
TTCAGCTCGTGTGTTTGGAG+AGG - Chr1:89606176-89606195 MsG0180005282.01.T01:CDS 50.0%
TTCTGATCGCTTAAGGACCC+CGG - Chr1:89606123-89606142 MsG0180005282.01.T01:intron 50.0%
! TCCCTTTTTAGATGGCCGCA+TGG - Chr1:89607543-89607562 MsG0180005282.01.T01:CDS 50.0%
!! ATCTTTGGAGTCCATCAGCC+CGG + Chr1:89608129-89608148 None:intergenic 50.0%
CCTCTTCCCACACACAATGC+CGG + Chr1:89608042-89608061 None:intergenic 55.0%
! ACCATTACCGTCTTGGTGGC+CGG + Chr1:89606145-89606164 None:intergenic 55.0%
! CAGTGCTGGGTGAACCTTCA+GGG + Chr1:89606027-89606046 None:intergenic 55.0%
!! TCCCTCCATAGTGGCGGATT+CGG + Chr1:89607835-89607854 None:intergenic 55.0%
CCCGAATCCGCCACTATGGA+GGG - Chr1:89607831-89607850 MsG0180005282.01.T01:intron 60.0%
CCGGCATTGTGTGTGGGAAG+AGG - Chr1:89608039-89608058 MsG0180005282.01.T01:intron 60.0%
CCTGAAGGTTCACCCAGCAC+TGG - Chr1:89606025-89606044 MsG0180005282.01.T01:intron 60.0%
TGTCCCCGAATCCGCCACTA+TGG - Chr1:89607827-89607846 MsG0180005282.01.T01:intron 60.0%
! CATTACCGTCTTGGTGGCCG+GGG + Chr1:89606143-89606162 None:intergenic 60.0%
! CCAGTGCTGGGTGAACCTTC+AGG + Chr1:89606028-89606047 None:intergenic 60.0%
! CCATTACCGTCTTGGTGGCC+GGG + Chr1:89606144-89606163 None:intergenic 60.0%
!! ATAGTGGCGGATTCGGGGAC+AGG + Chr1:89607828-89607847 None:intergenic 60.0%
!! CCCTCCATAGTGGCGGATTC+GGG + Chr1:89607834-89607853 None:intergenic 60.0%
!! CCTCCATAGTGGCGGATTCG+GGG + Chr1:89607833-89607852 None:intergenic 60.0%
!! GTTGGTGGCAGTGTCGTGTC+TGG - Chr1:89607092-89607111 MsG0180005282.01.T01:intron 60.0%
AAGGACCCCGGCCACCAAGA+CGG - Chr1:89606135-89606154 MsG0180005282.01.T01:intron 65.0%
CCCCGAATCCGCCACTATGG+AGG - Chr1:89607830-89607849 MsG0180005282.01.T01:intron 65.0%
CCCGGCCACCAAGACGGTAA+TGG - Chr1:89606141-89606160 MsG0180005282.01.T01:CDS 65.0%
Chromosome Type Strat End Strand Name
Chr1 gene 89605815 89608505 89605815 ID=MsG0180005282.01;Name=MsG0180005282.01
Chr1 mRNA 89605815 89608505 89605815 ID=MsG0180005282.01.T01;Parent=MsG0180005282.01;Name=MsG0180005282.01.T01;_AED=0.41;_eAED=0.42;_QI=0|1|0.8|1|0.75|0.6|5|0|340
Chr1 exon 89605815 89606026 89605815 ID=MsG0180005282.01.T01:exon:17245;Parent=MsG0180005282.01.T01
Chr1 exon 89606136 89606392 89606136 ID=MsG0180005282.01.T01:exon:17244;Parent=MsG0180005282.01.T01
Chr1 exon 89607422 89607633 89607422 ID=MsG0180005282.01.T01:exon:17243;Parent=MsG0180005282.01.T01
Chr1 exon 89608164 89608505 89608164 ID=MsG0180005282.01.T01:exon:17242;Parent=MsG0180005282.01.T01
Chr1 CDS 89608164 89608505 89608164 ID=MsG0180005282.01.T01:cds;Parent=MsG0180005282.01.T01
Chr1 CDS 89607422 89607633 89607422 ID=MsG0180005282.01.T01:cds;Parent=MsG0180005282.01.T01
Chr1 CDS 89606136 89606392 89606136 ID=MsG0180005282.01.T01:cds;Parent=MsG0180005282.01.T01
Chr1 CDS 89605815 89606026 89605815 ID=MsG0180005282.01.T01:cds;Parent=MsG0180005282.01.T01
Gene Sequence

>MsG0180005282.01.T01

ATGAAGGTGTTAAACTCAACATCCCAACTTGTAGAACCACTAGAAAGTCGAAAATTTGCAAGGTTTAACTTACAATACGTAGAGACAGAAGAGAAGCCACTGGGAGTAGAACAATGGACGCCAAGATTTGCTGGCCATCAGAGCTTAGAAGAGAGAGAAAATTCATTTTTGGCACGTGATCAAAACATAAAATGTGGTTTTGTTAAAGGCCCTGAAGGTTCACCCAGCACTGGTTTTGACATGTCAGAAGATGATGAAAGTTACATTAGCAGATGCCACATTGCTGTGATTTCTTGCATATTTGGAAATTCTGATCGCTTAAGGACCCCGGCCACCAAGACGATCAGTCGTTTGTCAAGGAAGAATGTCTGCTTTGTTATGTTTACTGATGAAGTTACAGTGCGTACACTTACTTCTGAAGGCCATCCACCTGATAGAATGGGTTTCATTGGCTTTTGGAAGTTAGTGGTAGTGAAGAATCTACCTTATGATGATATGCGGCGAGTGGGCAAAATACCAAAGTTATTGGCCCATCGACTTTTTCCCTTTGCAAGGTATTCAATTTGGTTGGATAGCAAATTAAGGTTGCAGCTTGATCCTTTACTCATCTTGGAGTACTTCTTGTGGCGAAAAGGCAATGAATTTGCAATATCCAATCACTATGACCGGCATTGTGTGTGGGAAGAGGTAGCACAAAACAAGAAATTGAACAAGTATAATCATACAGTTATAGATCAACAATTTGAATTTTACCGGGCTGATGGACTCCAAAGATTTAATGCATCAGATCCAAACAAACTTCTTTCAAGCAATGTACCAGAAGGCTCTTTTATTATCAGGGCACACACCCCTATGTCAAATTTGTTTAACTGTCTTTGGTTCAATGAAGTTGAGCGATTTACTCCTCGTGATCAGCTGAGTTTTGCATATACATATCAAAAGCTGAGAAGGATGAATCCTGATAAACCTTTTCATCTTAATATGTTCAAGGTGAAGAAACTTTACATAGCTTCATATAGATAG
Protein sequence

>MsG0180005282.01.T01

MKVLNSTSQLVEPLESRKFARFNLQYVETEEKPLGVEQWTPRFAGHQSLEERENSFLARDQNIKCGFVKGPEGSPSTGFDMSEDDESYISRCHIAVISCIFGNSDRLRTPATKTISRLSRKNVCFVMFTDEVTVRTLTSEGHPPDRMGFIGFWKLVVVKNLPYDDMRRVGKIPKLLAHRLFPFARYSIWLDSKLRLQLDPLLILEYFLWRKGNEFAISNHYDRHCVWEEVAQNKKLNKYNHTVIDQQFEFYRADGLQRFNASDPNKLLSSNVPEGSFIIRAHTPMSNLFNCLWFNEVERFTPRDQLSFAYTYQKLRRMNPDKPFHLNMFKVKKLYIASYR*