Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0780041213.01.T01 | XP_024625148.1 | 97.685 | 432 | 8 | 1 | 1 | 432 | 1 | 430 | 0 | 852 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0780041213.01.T01 | Q8RWC5 | 80.34 | 412 | 74 | 3 | 22 | 432 | 22 | 427 | 0 | 620 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0780041213.01.T01 | A0A072U3I4 | 97.685 | 432 | 8 | 1 | 1 | 432 | 1 | 430 | 0.0 | 852 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MsG0180005199.01 | MsG0780041213.01 | 0.830595 | 2.687396e-55 | 2.844465e-52 |
| MsG0180005282.01 | MsG0780041213.01 | 0.817531 | 3.142057e-52 | 2.294023e-49 |
| MsG0280006293.01 | MsG0780041213.01 | 0.844795 | 6.060419e-59 | 9.895402e-56 |
| MsG0780040752.01 | MsG0780041213.01 | 0.807481 | 4.950339e-50 | 2.760331e-47 |
| MsG0780041213.01 | MsG0780041243.01 | 0.818898 | 1.541630e-52 | 1.168783e-49 |
| MsG0780041213.01 | MsG0780041569.01 | 0.813458 | 2.533723e-51 | 1.655640e-48 |
| MsG0780041213.01 | MsG0880045141.01 | 0.838303 | 3.115002e-57 | 4.154678e-54 |
| MsG0780041213.01 | MsG0880046179.01 | 0.812445 | 4.223652e-51 | 2.686165e-48 |
| MsG0780041213.01 | MsG0880046536.01 | -0.821108 | 4.810888e-53 | 3.878309e-50 |
| MsG0480021652.01 | MsG0780041213.01 | 0.858447 | 8.186712e-63 | 2.090050e-59 |
| MsG0480023279.01 | MsG0780041213.01 | 0.805827 | 1.106101e-49 | 5.910730e-47 |
| MsG0380016323.01 | MsG0780041213.01 | 0.848416 | 6.217439e-60 | 1.140221e-56 |
| MsG0380016337.01 | MsG0780041213.01 | 0.836443 | 9.329482e-57 | 1.175932e-53 |
| MsG0380016340.01 | MsG0780041213.01 | 0.859990 | 2.821186e-63 | 7.594698e-60 |
| MsG0380016547.01 | MsG0780041213.01 | 0.800083 | 1.702348e-48 | 7.855425e-46 |
| MsG0380016832.01 | MsG0780041213.01 | 0.858912 | 5.947280e-63 | 1.542494e-59 |
| MsG0380016899.01 | MsG0780041213.01 | 0.829923 | 3.922863e-55 | 4.072167e-52 |
| MsG0280007598.01 | MsG0780041213.01 | 0.853227 | 2.747486e-61 | 5.895011e-58 |
| MsG0780036637.01 | MsG0780041213.01 | 0.902751 | 7.035795e-79 | 1.011296e-74 |
| MsG0780039440.01 | MsG0780041213.01 | 0.838424 | 2.899246e-57 | 3.881608e-54 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0780041213.01.T01 | MTR_7g106760 | 97.685 | 432 | 8 | 1 | 1 | 432 | 1 | 430 | 0.0 | 852 |
| MsG0780041213.01.T01 | MTR_4g050170 | 75.862 | 406 | 94 | 4 | 31 | 432 | 39 | 444 | 0.0 | 560 |
| MsG0780041213.01.T01 | MTR_2g087810 | 68.069 | 404 | 116 | 5 | 31 | 433 | 26 | 417 | 2.34e-180 | 511 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0780041213.01.T01 | AT2G35860 | 80.340 | 412 | 74 | 3 | 22 | 432 | 22 | 427 | 0.0 | 620 |
| MsG0780041213.01.T01 | AT5G06390 | 73.636 | 440 | 97 | 6 | 3 | 432 | 5 | 435 | 0.0 | 608 |
| MsG0780041213.01.T01 | AT3G52370 | 77.228 | 404 | 78 | 4 | 31 | 432 | 80 | 471 | 0.0 | 588 |
| MsG0780041213.01.T01 | AT3G52370 | 77.228 | 404 | 78 | 4 | 31 | 432 | 27 | 418 | 0.0 | 584 |
| MsG0780041213.01.T01 | AT3G11700 | 71.946 | 442 | 106 | 6 | 3 | 432 | 5 | 440 | 0.0 | 574 |
| MsG0780041213.01.T01 | AT5G05650 | 59.574 | 94 | 34 | 1 | 313 | 406 | 2 | 91 | 8.17e-32 | 118 |
Find 145 sgRNAs with CRISPR-Local
Find 158 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GGATAACGTCGTCTGGTTTA+AGG | 0.220729 | 7:+88310197 | None:intergenic |
| CAATGAAATGGCGGATATTC+TGG | 0.243548 | 7:-88309849 | MsG0780041213.01.T01:CDS |
| TATAACGCCGTTAGAAGATT+TGG | 0.248988 | 7:-88309641 | MsG0780041213.01.T01:CDS |
| GGATGGAATTGGAGTTGATT+TGG | 0.259611 | 7:+88310563 | None:intergenic |
| AAGGAAGAGGGTAATGAAAT+TGG | 0.275209 | 7:+88310639 | None:intergenic |
| TCTGACGGTTCTGTCAAATT+TGG | 0.285494 | 7:-88309566 | MsG0780041213.01.T01:CDS |
| ACGTTCTAAAGCTTGATTTC+TGG | 0.286027 | 7:+88310426 | None:intergenic |
| TCTACCTCCGGTGCTCCTTC+TGG | 0.287662 | 7:+88310070 | None:intergenic |
| AGGATATGTTCTAACAGTTT+TGG | 0.293643 | 7:-88309780 | MsG0780041213.01.T01:CDS |
| TTCGCCATTGCTTCATCATT+TGG | 0.302310 | 7:+88309755 | None:intergenic |
| CGTTCTAAAGCTTGATTTCT+GGG | 0.312741 | 7:+88310427 | None:intergenic |
| TTGGGCGGTGGTGGTGGTGG+TGG | 0.319212 | 7:+88310582 | None:intergenic |
| CTACCGTCGGTGTAAATATC+AGG | 0.354622 | 7:+88309512 | None:intergenic |
| GATGGAATTGGAGTTGATTT+GGG | 0.356833 | 7:+88310564 | None:intergenic |
| ACGAGCACCATGGATTTCTA+TGG | 0.360253 | 7:-88310667 | None:intergenic |
| GTTGATTTGGGCGGTGGTGG+TGG | 0.361810 | 7:+88310576 | None:intergenic |
| CAAGAATCGCTTCACATCAT+TGG | 0.366577 | 7:-88310315 | MsG0780041213.01.T01:CDS |
| TGGTGGGTAATGCGGAATGG+AGG | 0.371305 | 7:+88310602 | None:intergenic |
| AACGTCGTTAGCAACGGAAA+TGG | 0.374579 | 7:-88309819 | MsG0780041213.01.T01:CDS |
| GGTGGAGCTCCGGCGGGGAC+TGG | 0.374960 | 7:+88310016 | None:intergenic |
| GGTGCTAATGCGTCGTATAT+TGG | 0.376354 | 7:+88309986 | None:intergenic |
| ATCCAAACTCTTCTCCATTA+CGG | 0.376670 | 7:-88309878 | MsG0780041213.01.T01:CDS |
| CACCGTAATGGAGAAGAGTT+TGG | 0.378647 | 7:+88309876 | None:intergenic |
| AAGTGCGACGAGGATGGAAT+TGG | 0.385001 | 7:+88310552 | None:intergenic |
| GCCTCATAAAGTTGTTGCTC+AGG | 0.394027 | 7:-88309591 | MsG0780041213.01.T01:CDS |
| GCTCCGGCGGGGACTGGTGC+GGG | 0.397970 | 7:+88310022 | None:intergenic |
| GGAGTTGATTTGGGCGGTGG+TGG | 0.402385 | 7:+88310573 | None:intergenic |
| ATAACGCCGTTAGAAGATTT+GGG | 0.405597 | 7:-88309640 | MsG0780041213.01.T01:CDS |
| TGATAGTATATAATTTGTTC+CGG | 0.408846 | 7:+88309698 | None:intergenic |
| TTTCCGTTGCTAACGACGTT+AGG | 0.410525 | 7:+88309822 | None:intergenic |
| GATTTGGGCGGTGGTGGTGG+TGG | 0.411368 | 7:+88310579 | None:intergenic |
| ACGTCGTTAGCAACGGAAAT+GGG | 0.422550 | 7:-88309818 | MsG0780041213.01.T01:CDS |
| GGAGGGGAAGGAGGATAAGA+AGG | 0.424669 | 7:+88310620 | None:intergenic |
| TGTGAGACATTAAAAGAGTC+TGG | 0.425432 | 7:+88310347 | None:intergenic |
| TCCTGAGCAACAACTTTATG+AGG | 0.429700 | 7:+88309590 | None:intergenic |
| TCATCTTCATTCTCTTCCTC+CGG | 0.431860 | 7:+88309452 | None:intergenic |
| TTTAGCTCCGGTGGGGTTTG+TGG | 0.440481 | 7:+88310240 | None:intergenic |
| ATGCCGTGGATGACGCCGTC+TGG | 0.442642 | 7:+88310172 | None:intergenic |
| CCGGGACCTGGTGCCGGTGC+TGG | 0.447792 | 7:+88309947 | None:intergenic |
| CTCTCCTCCGTTTGATACTC+GGG | 0.454279 | 7:+88309668 | None:intergenic |
| ATTAACGACTGATCAATTAT+CGG | 0.461860 | 7:-88309732 | MsG0780041213.01.T01:CDS |
| GACGGTAGAATTTCCGTTCA+AGG | 0.464023 | 7:-88309497 | MsG0780041213.01.T01:CDS |
| TCTTAGAACCACGCAATCTC+AGG | 0.465946 | 7:-88310375 | MsG0780041213.01.T01:CDS |
| ACTCTCCTCCGTTTGATACT+CGG | 0.469204 | 7:+88309667 | None:intergenic |
| CCGGTTGAAATCTTCTTGTA+CGG | 0.469217 | 7:+88310126 | None:intergenic |
| TGATGTGAAGCGATTCTTGA+AGG | 0.470697 | 7:+88310319 | None:intergenic |
| GTGGGTAATGCGGAATGGAG+GGG | 0.471004 | 7:+88310604 | None:intergenic |
| GGTTGGAGAGAGTGTGGTGG+TGG | 0.472921 | 7:+88310278 | None:intergenic |
| TGGTAGCACCGGTGGAGCTC+CGG | 0.474961 | 7:+88310006 | None:intergenic |
| TGGTGGTGGGTAATGCGGAA+TGG | 0.480134 | 7:+88310599 | None:intergenic |
| TTTCATTGTAACCACCGTAA+TGG | 0.480560 | 7:+88309864 | None:intergenic |
| GCCGGTGCTGGTGCTAGTGA+TGG | 0.484785 | 7:+88309959 | None:intergenic |
| CGATTCCCACTACACGGAAC+TGG | 0.484991 | 7:-88310527 | MsG0780041213.01.T01:CDS |
| ATTGGAGTTGATTTGGGCGG+TGG | 0.486645 | 7:+88310570 | None:intergenic |
| AAGAATTCAATACCTCTCCT+TGG | 0.486760 | 7:+88309374 | None:intergenic |
| GAAATGATGACGTGGACCAC+CGG | 0.488474 | 7:+88309928 | None:intergenic |
| TGTCACGGAGGTTTCTTCTC+CGG | 0.489131 | 7:+88310107 | None:intergenic |
| TTACGGTGGTTACAATGAAA+TGG | 0.490556 | 7:-88309861 | MsG0780041213.01.T01:CDS |
| GGTGGGTAATGCGGAATGGA+GGG | 0.490795 | 7:+88310603 | None:intergenic |
| ACTGGCCGAGCTCGTTGAAA+AGG | 0.495652 | 7:-88310509 | MsG0780041213.01.T01:CDS |
| ATTTCCGTTCAAGGTATTGA+CGG | 0.497370 | 7:-88309488 | MsG0780041213.01.T01:CDS |
| ATGCGGAATGGAGGGGAAGG+AGG | 0.497385 | 7:+88310611 | None:intergenic |
| AGCACCGGTGGAGCTCCGGC+GGG | 0.497548 | 7:+88310010 | None:intergenic |
| AGCTCCGGCGGGGACTGGTG+CGG | 0.498948 | 7:+88310021 | None:intergenic |
| ATCGAGAAGTGCGACGAGGA+TGG | 0.499690 | 7:+88310546 | None:intergenic |
| CAACGGCGAACGTCAAGTAA+AGG | 0.500147 | 7:-88309906 | MsG0780041213.01.T01:CDS |
| GGTGGTGGTGGTGGGTAATG+CGG | 0.504869 | 7:+88310594 | None:intergenic |
| TTCTTTAAGCGGTTTGTACG+TGG | 0.506368 | 7:+88310046 | None:intergenic |
| GGTTTGTGGTGAGGTGAAGA+CGG | 0.506775 | 7:+88310254 | None:intergenic |
| GCTCGGCCAGTTCCGTGTAG+TGG | 0.508732 | 7:+88310521 | None:intergenic |
| CCGTACAAGAAGATTTCAAC+CGG | 0.510223 | 7:-88310126 | MsG0780041213.01.T01:CDS |
| AGTCCCCGCCGGAGCTCCAC+CGG | 0.513114 | 7:-88310014 | MsG0780041213.01.T01:CDS |
| CTCCGGTGGGGTTTGTGGTG+AGG | 0.517904 | 7:+88310245 | None:intergenic |
| ATAATTTGTTCCGGTGCACC+TGG | 0.520254 | 7:+88309707 | None:intergenic |
| GAAGGAGGATAAGAAGGAAG+AGG | 0.520317 | 7:+88310626 | None:intergenic |
| GGACCACCGGGACCTGGTGC+CGG | 0.522326 | 7:+88309941 | None:intergenic |
| TGGTGGTGGAGATGAGTGGC+TGG | 0.525037 | 7:+88310292 | None:intergenic |
| TTATCAAGCGTTCGATGCCG+TGG | 0.529305 | 7:+88310158 | None:intergenic |
| CCAGCACCGGCACCAGGTCC+CGG | 0.530403 | 7:-88309947 | MsG0780041213.01.T01:CDS |
| AAAAGCTCGAAGAAGCCGTC+GGG | 0.532193 | 7:-88310474 | MsG0780041213.01.T01:CDS |
| TCTGGACGGATAACGTCGTC+TGG | 0.535637 | 7:+88310190 | None:intergenic |
| ATGGGTCGTTTAGTTTCTGA+AGG | 0.541305 | 7:-88309800 | MsG0780041213.01.T01:CDS |
| AAGGAGGATAAGAAGGAAGA+GGG | 0.541355 | 7:+88310627 | None:intergenic |
| TAGCACCGGTGGAGCTCCGG+CGG | 0.544331 | 7:+88310009 | None:intergenic |
| TCCATCACTAGCACCAGCAC+CGG | 0.545011 | 7:-88309960 | MsG0780041213.01.T01:CDS |
| AAATGATGACGTGGACCACC+GGG | 0.547064 | 7:+88309929 | None:intergenic |
| TTAGAAGCAACTTTAACAAG+TGG | 0.547256 | 7:+88309398 | None:intergenic |
| CTCGGCCAGTTCCGTGTAGT+GGG | 0.547978 | 7:+88310522 | None:intergenic |
| GGCTCCAAATGATGAAGCAA+TGG | 0.555279 | 7:-88309759 | MsG0780041213.01.T01:CDS |
| TTAAAGTTGCTTCTAAACCA+AGG | 0.557248 | 7:-88309391 | MsG0780041213.01.T01:CDS |
| TGAGATTGCGTGGTTCTAAG+AGG | 0.558646 | 7:+88310377 | None:intergenic |
| TATAATTCCCGAGTATCAAA+CGG | 0.563846 | 7:-88309675 | MsG0780041213.01.T01:CDS |
| CTGGTGCGGGTTTCTTTAAG+CGG | 0.564810 | 7:+88310035 | None:intergenic |
| GTAATGCGGAATGGAGGGGA+AGG | 0.567014 | 7:+88310608 | None:intergenic |
| TCTTCATTCTCTTCCTCCGG+TGG | 0.568260 | 7:+88309455 | None:intergenic |
| CACCTCACCACAAACCCCAC+CGG | 0.568513 | 7:-88310247 | MsG0780041213.01.T01:CDS |
| TGACGTGGACCACCGGGACC+TGG | 0.568809 | 7:+88309935 | None:intergenic |
| ATTATCGGAACCAGGTGCAC+CGG | 0.569501 | 7:-88309717 | MsG0780041213.01.T01:CDS |
| GCGTCGTATATTGGTAGCAC+CGG | 0.571315 | 7:+88309995 | None:intergenic |
| GGTGAGGTGAAGACGGTGGT+TGG | 0.574275 | 7:+88310261 | None:intergenic |
| TTTGTACGTGGATCTACCTC+CGG | 0.575035 | 7:+88310058 | None:intergenic |
| CTAGCACCAGCACCGGCACC+AGG | 0.575040 | 7:-88309953 | MsG0780041213.01.T01:CDS |
| TAACCTAACGTCGTTAGCAA+CGG | 0.578368 | 7:-88309825 | MsG0780041213.01.T01:CDS |
| AAATCTTCTTGTACGGAACG+AGG | 0.582319 | 7:+88310133 | None:intergenic |
| GAAGAATAGCGGAGATGTCA+CGG | 0.583409 | 7:+88310092 | None:intergenic |
| CGTGGATGACGCCGTCTGGA+CGG | 0.584061 | 7:+88310176 | None:intergenic |
| CGTCCAGACGGCGTCATCCA+CGG | 0.584160 | 7:-88310175 | MsG0780041213.01.T01:CDS |
| GCACCGGTGGAGCTCCGGCG+GGG | 0.590423 | 7:+88310011 | None:intergenic |
| AAGGATCTCAGCGGAATCAA+CGG | 0.591246 | 7:+88310216 | None:intergenic |
| TCGTATATTGGTAGCACCGG+TGG | 0.595032 | 7:+88309998 | None:intergenic |
| GACGGTGGTTGGAGAGAGTG+TGG | 0.595155 | 7:+88310272 | None:intergenic |
| AACACCGTCAATACCTTGAA+CGG | 0.599863 | 7:+88309484 | None:intergenic |
| AAACCCGCACCAGTCCCCGC+CGG | 0.600483 | 7:-88310025 | MsG0780041213.01.T01:CDS |
| TATTCTTCCAGAAGGAGCAC+CGG | 0.603132 | 7:-88310077 | MsG0780041213.01.T01:CDS |
| TTGTGGTGAGGTGAAGACGG+TGG | 0.605791 | 7:+88310257 | None:intergenic |
| GTTGTTGCTCAGGAATCTGA+CGG | 0.606043 | 7:-88309581 | MsG0780041213.01.T01:CDS |
| GGTTCTGTCAAATTTGGTCA+CGG | 0.607360 | 7:-88309560 | MsG0780041213.01.T01:CDS |
| GGAATTGGAGTTGATTTGGG+CGG | 0.614705 | 7:+88310567 | None:intergenic |
| AATCTTCTTGTACGGAACGA+GGG | 0.619640 | 7:+88310134 | None:intergenic |
| ATATACGACGCATTAGCACC+AGG | 0.620333 | 7:-88309983 | MsG0780041213.01.T01:CDS |
| GCTGGTGCTAGTGATGGACC+TGG | 0.620481 | 7:+88309965 | None:intergenic |
| CAAAAGCTCGAAGAAGCCGT+CGG | 0.622876 | 7:-88310475 | MsG0780041213.01.T01:CDS |
| ATCTCCGCTATTCTTCCAGA+AGG | 0.624877 | 7:-88310085 | MsG0780041213.01.T01:CDS |
| AGTGTGGTGGTGGAGATGAG+TGG | 0.625385 | 7:+88310288 | None:intergenic |
| GGAGACACCATAGAAATCCA+TGG | 0.637121 | 7:+88310660 | None:intergenic |
| TCTTCCAGAAGGAGCACCGG+AGG | 0.640198 | 7:-88310074 | MsG0780041213.01.T01:CDS |
| TGCTCCTTCTGGAAGAATAG+CGG | 0.646470 | 7:+88310081 | None:intergenic |
| GGTCCACGTCATCATTTCAA+CGG | 0.650887 | 7:-88309923 | MsG0780041213.01.T01:CDS |
| TGTGATGTTGTGATTCCCGA+CGG | 0.654187 | 7:+88310459 | None:intergenic |
| ACTGATCAATTATCGGAACC+AGG | 0.656433 | 7:-88309725 | MsG0780041213.01.T01:CDS |
| ACTTCTCGATTCCCACTACA+CGG | 0.657158 | 7:-88310533 | MsG0780041213.01.T01:CDS |
| GTTGCTTCTAAACCAAGGAG+AGG | 0.661362 | 7:-88309386 | MsG0780041213.01.T01:CDS |
| GATCCTGATATTTACACCGA+CGG | 0.666955 | 7:-88309515 | MsG0780041213.01.T01:CDS |
| GGTGGTTGGAGAGAGTGTGG+TGG | 0.670122 | 7:+88310275 | None:intergenic |
| TGGAGTGACCTGAGATTGCG+TGG | 0.674595 | 7:+88310367 | None:intergenic |
| CAAACTCTTCTCCATTACGG+TGG | 0.680073 | 7:-88309875 | MsG0780041213.01.T01:CDS |
| TTGAACGGAAATTCTACCGT+CGG | 0.682101 | 7:+88309499 | None:intergenic |
| CGGTGGTTACAATGAAATGG+CGG | 0.682897 | 7:-88309858 | MsG0780041213.01.T01:CDS |
| GACGACGTTATCCGTCCAGA+CGG | 0.685881 | 7:-88310187 | MsG0780041213.01.T01:CDS |
| GCACCGGCACCAGGTCCCGG+TGG | 0.687191 | 7:-88309944 | MsG0780041213.01.T01:CDS |
| TCGCCGTTGAAATGATGACG+TGG | 0.697402 | 7:+88309920 | None:intergenic |
| GGGAATCGAGAAGTGCGACG+AGG | 0.720448 | 7:+88310542 | None:intergenic |
| AATTCCCGAGTATCAAACGG+AGG | 0.728958 | 7:-88309672 | MsG0780041213.01.T01:CDS |
| GTCTGGTTTAAGGATCTCAG+CGG | 0.747213 | 7:+88310207 | None:intergenic |
| GAATAGCGGAGATGTCACGG+AGG | 0.821146 | 7:+88310095 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TGATAGTATATAATTTGTTC+CGG | + | Chr7:88310321-88310340 | None:intergenic | 20.0% |
| ! | ATTAACGACTGATCAATTAT+CGG | - | Chr7:88310284-88310303 | MsG0780041213.01.T01:CDS | 25.0% |
| !! | AATTTTCCCAAATCTTCTAA+CGG | + | Chr7:88310385-88310404 | None:intergenic | 25.0% |
| TATAATTCCCGAGTATCAAA+CGG | - | Chr7:88310341-88310360 | MsG0780041213.01.T01:CDS | 30.0% | |
| TTAAAGTTGCTTCTAAACCA+AGG | - | Chr7:88310625-88310644 | MsG0780041213.01.T01:CDS | 30.0% | |
| TTAGAAGCAACTTTAACAAG+TGG | + | Chr7:88310621-88310640 | None:intergenic | 30.0% | |
| ! | AAGAGGAATCTTTTGAATTC+AGG | + | Chr7:88309625-88309644 | None:intergenic | 30.0% |
| ! | AGAGGAATCTTTTGAATTCA+GGG | + | Chr7:88309624-88309643 | None:intergenic | 30.0% |
| ! | AGGATATGTTCTAACAGTTT+TGG | - | Chr7:88310236-88310255 | MsG0780041213.01.T01:CDS | 30.0% |
| AAGAATTCAATACCTCTCCT+TGG | + | Chr7:88310645-88310664 | None:intergenic | 35.0% | |
| AAGGAAGAGGGTAATGAAAT+TGG | + | Chr7:88309380-88309399 | None:intergenic | 35.0% | |
| ATAACGCCGTTAGAAGATTT+GGG | - | Chr7:88310376-88310395 | MsG0780041213.01.T01:CDS | 35.0% | |
| ATCCAAACTCTTCTCCATTA+CGG | - | Chr7:88310138-88310157 | MsG0780041213.01.T01:CDS | 35.0% | |
| TATAACGCCGTTAGAAGATT+TGG | - | Chr7:88310375-88310394 | MsG0780041213.01.T01:CDS | 35.0% | |
| TGTGAGACATTAAAAGAGTC+TGG | + | Chr7:88309672-88309691 | None:intergenic | 35.0% | |
| TTACGGTGGTTACAATGAAA+TGG | - | Chr7:88310155-88310174 | MsG0780041213.01.T01:CDS | 35.0% | |
| TTTCATTGTAACCACCGTAA+TGG | + | Chr7:88310155-88310174 | None:intergenic | 35.0% | |
| ! | ATCTTTTGAATTCAGGGTCA+AGG | + | Chr7:88309618-88309637 | None:intergenic | 35.0% |
| ! | GATGGAATTGGAGTTGATTT+GGG | + | Chr7:88309455-88309474 | None:intergenic | 35.0% |
| ! | TAACAAGTGGAGTTTTTGCA+CGG | + | Chr7:88310608-88310627 | None:intergenic | 35.0% |
| !! | ACGTTCTAAAGCTTGATTTC+TGG | + | Chr7:88309593-88309612 | None:intergenic | 35.0% |
| !! | ATTTCCGTTCAAGGTATTGA+CGG | - | Chr7:88310528-88310547 | MsG0780041213.01.T01:CDS | 35.0% |
| !! | CGTTCTAAAGCTTGATTTCT+GGG | + | Chr7:88309592-88309611 | None:intergenic | 35.0% |
| AAATCTTCTTGTACGGAACG+AGG | + | Chr7:88309886-88309905 | None:intergenic | 40.0% | |
| AACACCGTCAATACCTTGAA+CGG | + | Chr7:88310535-88310554 | None:intergenic | 40.0% | |
| AAGGAGGATAAGAAGGAAGA+GGG | + | Chr7:88309392-88309411 | None:intergenic | 40.0% | |
| AATCTTCTTGTACGGAACGA+GGG | + | Chr7:88309885-88309904 | None:intergenic | 40.0% | |
| ACTGATCAATTATCGGAACC+AGG | - | Chr7:88310291-88310310 | MsG0780041213.01.T01:CDS | 40.0% | |
| CAAGAATCGCTTCACATCAT+TGG | - | Chr7:88309701-88309720 | MsG0780041213.01.T01:CDS | 40.0% | |
| CCGGTTGAAATCTTCTTGTA+CGG | + | Chr7:88309893-88309912 | None:intergenic | 40.0% | |
| CCGTACAAGAAGATTTCAAC+CGG | - | Chr7:88309890-88309909 | MsG0780041213.01.T01:CDS | 40.0% | |
| GATCCTGATATTTACACCGA+CGG | - | Chr7:88310501-88310520 | MsG0780041213.01.T01:CDS | 40.0% | |
| GGTTCTGTCAAATTTGGTCA+CGG | - | Chr7:88310456-88310475 | MsG0780041213.01.T01:CDS | 40.0% | |
| TAACCTAACGTCGTTAGCAA+CGG | - | Chr7:88310191-88310210 | MsG0780041213.01.T01:CDS | 40.0% | |
| TCATCTTCATTCTCTTCCTC+CGG | + | Chr7:88310567-88310586 | None:intergenic | 40.0% | |
| TCCTGAGCAACAACTTTATG+AGG | + | Chr7:88310429-88310448 | None:intergenic | 40.0% | |
| TCTGACGGTTCTGTCAAATT+TGG | - | Chr7:88310450-88310469 | MsG0780041213.01.T01:CDS | 40.0% | |
| TGATGTGAAGCGATTCTTGA+AGG | + | Chr7:88309700-88309719 | None:intergenic | 40.0% | |
| TTCGCCATTGCTTCATCATT+TGG | + | Chr7:88310264-88310283 | None:intergenic | 40.0% | |
| TTCTTTAAGCGGTTTGTACG+TGG | + | Chr7:88309973-88309992 | None:intergenic | 40.0% | |
| TTGAACGGAAATTCTACCGT+CGG | + | Chr7:88310520-88310539 | None:intergenic | 40.0% | |
| ! | ATGGGTCGTTTAGTTTCTGA+AGG | - | Chr7:88310216-88310235 | MsG0780041213.01.T01:CDS | 40.0% |
| ! | GGATGGAATTGGAGTTGATT+TGG | + | Chr7:88309456-88309475 | None:intergenic | 40.0% |
| !! | CAATGAAATGGCGGATATTC+TGG | - | Chr7:88310167-88310186 | MsG0780041213.01.T01:CDS | 40.0% |
| AACGTCGTTAGCAACGGAAA+TGG | - | Chr7:88310197-88310216 | MsG0780041213.01.T01:CDS | 45.0% | |
| AAGGATCTCAGCGGAATCAA+CGG | + | Chr7:88309803-88309822 | None:intergenic | 45.0% | |
| AATTCCCGAGTATCAAACGG+AGG | - | Chr7:88310344-88310363 | MsG0780041213.01.T01:CDS | 45.0% | |
| ACGTCGTTAGCAACGGAAAT+GGG | - | Chr7:88310198-88310217 | MsG0780041213.01.T01:CDS | 45.0% | |
| ACTCTCCTCCGTTTGATACT+CGG | + | Chr7:88310352-88310371 | None:intergenic | 45.0% | |
| ACTTCTCGATTCCCACTACA+CGG | - | Chr7:88309483-88309502 | MsG0780041213.01.T01:CDS | 45.0% | |
| ATATACGACGCATTAGCACC+AGG | - | Chr7:88310033-88310052 | MsG0780041213.01.T01:CDS | 45.0% | |
| ATCTCCGCTATTCTTCCAGA+AGG | - | Chr7:88309931-88309950 | MsG0780041213.01.T01:CDS | 45.0% | |
| CAAACTCTTCTCCATTACGG+TGG | - | Chr7:88310141-88310160 | MsG0780041213.01.T01:CDS | 45.0% | |
| CGGTGGTTACAATGAAATGG+CGG | - | Chr7:88310158-88310177 | MsG0780041213.01.T01:CDS | 45.0% | |
| CTACCGTCGGTGTAAATATC+AGG | + | Chr7:88310507-88310526 | None:intergenic | 45.0% | |
| GAAGGAGGATAAGAAGGAAG+AGG | + | Chr7:88309393-88309412 | None:intergenic | 45.0% | |
| GACGGTAGAATTTCCGTTCA+AGG | - | Chr7:88310519-88310538 | MsG0780041213.01.T01:CDS | 45.0% | |
| GCCTCATAAAGTTGTTGCTC+AGG | - | Chr7:88310425-88310444 | MsG0780041213.01.T01:CDS | 45.0% | |
| GGCTCCAAATGATGAAGCAA+TGG | - | Chr7:88310257-88310276 | MsG0780041213.01.T01:CDS | 45.0% | |
| GGTCCACGTCATCATTTCAA+CGG | - | Chr7:88310093-88310112 | MsG0780041213.01.T01:CDS | 45.0% | |
| GGTGCTAATGCGTCGTATAT+TGG | + | Chr7:88310033-88310052 | None:intergenic | 45.0% | |
| GTTGCTTCTAAACCAAGGAG+AGG | - | Chr7:88310630-88310649 | MsG0780041213.01.T01:CDS | 45.0% | |
| GTTGTTGCTCAGGAATCTGA+CGG | - | Chr7:88310435-88310454 | MsG0780041213.01.T01:CDS | 45.0% | |
| TCTTAGAACCACGCAATCTC+AGG | - | Chr7:88309641-88309660 | MsG0780041213.01.T01:CDS | 45.0% | |
| TGTGATGTTGTGATTCCCGA+CGG | + | Chr7:88309560-88309579 | None:intergenic | 45.0% | |
| TTTCCGTTGCTAACGACGTT+AGG | + | Chr7:88310197-88310216 | None:intergenic | 45.0% | |
| TTTGTACGTGGATCTACCTC+CGG | + | Chr7:88309961-88309980 | None:intergenic | 45.0% | |
| ! | AAGTGCCTTTTCAACGAGCT+CGG | + | Chr7:88309515-88309534 | None:intergenic | 45.0% |
| ! | CACCGTAATGGAGAAGAGTT+TGG | + | Chr7:88310143-88310162 | None:intergenic | 45.0% |
| ! | GAAGAATAGCGGAGATGTCA+CGG | + | Chr7:88309927-88309946 | None:intergenic | 45.0% |
| ! | GGATAACGTCGTCTGGTTTA+AGG | + | Chr7:88309822-88309841 | None:intergenic | 45.0% |
| ! | GTCTGGTTTAAGGATCTCAG+CGG | + | Chr7:88309812-88309831 | None:intergenic | 45.0% |
| ! | TATTCTTCCAGAAGGAGCAC+CGG | - | Chr7:88309939-88309958 | MsG0780041213.01.T01:CDS | 45.0% |
| ! | TGCTCCTTCTGGAAGAATAG+CGG | + | Chr7:88309938-88309957 | None:intergenic | 45.0% |
| !! | ATAATTTGTTCCGGTGCACC+TGG | + | Chr7:88310312-88310331 | None:intergenic | 45.0% |
| !! | GGAATTGGAGTTGATTTGGG+CGG | + | Chr7:88309452-88309471 | None:intergenic | 45.0% |
| !! | TGAGATTGCGTGGTTCTAAG+AGG | + | Chr7:88309642-88309661 | None:intergenic | 45.0% |
| !!! | GGAATCAACGGTTTTAGCTC+CGG | + | Chr7:88309791-88309810 | None:intergenic | 45.0% |
| AAAAGCTCGAAGAAGCCGTC+GGG | - | Chr7:88309542-88309561 | MsG0780041213.01.T01:CDS | 50.0% | |
| AAGTGCGACGAGGATGGAAT+TGG | + | Chr7:88309467-88309486 | None:intergenic | 50.0% | |
| ATTATCGGAACCAGGTGCAC+CGG | - | Chr7:88310299-88310318 | MsG0780041213.01.T01:CDS | 50.0% | |
| CAAAAGCTCGAAGAAGCCGT+CGG | - | Chr7:88309541-88309560 | MsG0780041213.01.T01:CDS | 50.0% | |
| CAACGGCGAACGTCAAGTAA+AGG | - | Chr7:88310110-88310129 | MsG0780041213.01.T01:CDS | 50.0% | |
| CTCTCCTCCGTTTGATACTC+GGG | + | Chr7:88310351-88310370 | None:intergenic | 50.0% | |
| CTGGTGCGGGTTTCTTTAAG+CGG | + | Chr7:88309984-88310003 | None:intergenic | 50.0% | |
| GGTTTGTGGTGAGGTGAAGA+CGG | + | Chr7:88309765-88309784 | None:intergenic | 50.0% | |
| TCTTCATTCTCTTCCTCCGG+TGG | + | Chr7:88310564-88310583 | None:intergenic | 50.0% | |
| TGTCACGGAGGTTTCTTCTC+CGG | + | Chr7:88309912-88309931 | None:intergenic | 50.0% | |
| TTATCAAGCGTTCGATGCCG+TGG | + | Chr7:88309861-88309880 | None:intergenic | 50.0% | |
| ! | AAATGATGACGTGGACCACC+GGG | + | Chr7:88310090-88310109 | None:intergenic | 50.0% |
| ! | GAAATGATGACGTGGACCAC+CGG | + | Chr7:88310091-88310110 | None:intergenic | 50.0% |
| ! | GCGTCGTATATTGGTAGCAC+CGG | + | Chr7:88310024-88310043 | None:intergenic | 50.0% |
| ! | GGAGTTTTTGCACGGCGAAT+AGG | + | Chr7:88310600-88310619 | None:intergenic | 50.0% |
| ! | TCGCCGTTGAAATGATGACG+TGG | + | Chr7:88310099-88310118 | None:intergenic | 50.0% |
| ! | TCGTATATTGGTAGCACCGG+TGG | + | Chr7:88310021-88310040 | None:intergenic | 50.0% |
| ! | TGACGGTGTTCTTTTGCCAC+CGG | - | Chr7:88310545-88310564 | MsG0780041213.01.T01:CDS | 50.0% |
| !! | ATTGGAGTTGATTTGGGCGG+TGG | + | Chr7:88309449-88309468 | None:intergenic | 50.0% |
| !!! | ATCAACGGTTTTAGCTCCGG+TGG | + | Chr7:88309788-88309807 | None:intergenic | 50.0% |
| !!! | TCAACGGTTTTAGCTCCGGT+GGG | + | Chr7:88309787-88309806 | None:intergenic | 50.0% |
| ACTGGCCGAGCTCGTTGAAA+AGG | - | Chr7:88309507-88309526 | MsG0780041213.01.T01:CDS | 55.0% | |
| CGATTCCCACTACACGGAAC+TGG | - | Chr7:88309489-88309508 | MsG0780041213.01.T01:CDS | 55.0% | |
| GACGACGTTATCCGTCCAGA+CGG | - | Chr7:88309829-88309848 | MsG0780041213.01.T01:CDS | 55.0% | |
| GGAGGGGAAGGAGGATAAGA+AGG | + | Chr7:88309399-88309418 | None:intergenic | 55.0% | |
| GGTGGGTAATGCGGAATGGA+GGG | + | Chr7:88309416-88309435 | None:intergenic | 55.0% | |
| GTAATGCGGAATGGAGGGGA+AGG | + | Chr7:88309411-88309430 | None:intergenic | 55.0% | |
| GTGGGTAATGCGGAATGGAG+GGG | + | Chr7:88309415-88309434 | None:intergenic | 55.0% | |
| TCCATCACTAGCACCAGCAC+CGG | - | Chr7:88310056-88310075 | MsG0780041213.01.T01:CDS | 55.0% | |
| TCTGGACGGATAACGTCGTC+TGG | + | Chr7:88309829-88309848 | None:intergenic | 55.0% | |
| TGGAGTGACCTGAGATTGCG+TGG | + | Chr7:88309652-88309671 | None:intergenic | 55.0% | |
| TTGTGGTGAGGTGAAGACGG+TGG | + | Chr7:88309762-88309781 | None:intergenic | 55.0% | |
| ! | ATCGAGAAGTGCGACGAGGA+TGG | + | Chr7:88309473-88309492 | None:intergenic | 55.0% |
| ! | GAATAGCGGAGATGTCACGG+AGG | + | Chr7:88309924-88309943 | None:intergenic | 55.0% |
| ! | TGGTGGGTAATGCGGAATGG+AGG | + | Chr7:88309417-88309436 | None:intergenic | 55.0% |
| ! | TTTAGCTCCGGTGGGGTTTG+TGG | + | Chr7:88309779-88309798 | None:intergenic | 55.0% |
| !! | AGTGTGGTGGTGGAGATGAG+TGG | + | Chr7:88309731-88309750 | None:intergenic | 55.0% |
| !! | TGGTGGTGGGTAATGCGGAA+TGG | + | Chr7:88309420-88309439 | None:intergenic | 55.0% |
| !!! | CAACGGTTTTAGCTCCGGTG+GGG | + | Chr7:88309786-88309805 | None:intergenic | 55.0% |
| ATGCGGAATGGAGGGGAAGG+AGG | + | Chr7:88309408-88309427 | None:intergenic | 60.0% | |
| CACCTCACCACAAACCCCAC+CGG | - | Chr7:88309769-88309788 | MsG0780041213.01.T01:CDS | 60.0% | |
| CTCGGCCAGTTCCGTGTAGT+GGG | + | Chr7:88309497-88309516 | None:intergenic | 60.0% | |
| GACGGTGGTTGGAGAGAGTG+TGG | + | Chr7:88309747-88309766 | None:intergenic | 60.0% | |
| GGTGAGGTGAAGACGGTGGT+TGG | + | Chr7:88309758-88309777 | None:intergenic | 60.0% | |
| TCTACCTCCGGTGCTCCTTC+TGG | + | Chr7:88309949-88309968 | None:intergenic | 60.0% | |
| ! | CGGTGTTCTTTTGCCACCGG+AGG | - | Chr7:88310548-88310567 | MsG0780041213.01.T01:CDS | 60.0% |
| ! | GGGAATCGAGAAGTGCGACG+AGG | + | Chr7:88309477-88309496 | None:intergenic | 60.0% |
| ! | GGTGGTTGGAGAGAGTGTGG+TGG | + | Chr7:88309744-88309763 | None:intergenic | 60.0% |
| ! | GGTTGGAGAGAGTGTGGTGG+TGG | + | Chr7:88309741-88309760 | None:intergenic | 60.0% |
| !! | GCTGGTGCTAGTGATGGACC+TGG | + | Chr7:88310054-88310073 | None:intergenic | 60.0% |
| !! | GGAGTTGATTTGGGCGGTGG+TGG | + | Chr7:88309446-88309465 | None:intergenic | 60.0% |
| !! | GGTGGTGGTGGTGGGTAATG+CGG | + | Chr7:88309425-88309444 | None:intergenic | 60.0% |
| !! | GTTGATTTGGGCGGTGGTGG+TGG | + | Chr7:88309443-88309462 | None:intergenic | 60.0% |
| !! | TCTTCCAGAAGGAGCACCGG+AGG | - | Chr7:88309942-88309961 | MsG0780041213.01.T01:CDS | 60.0% |
| !! | TGGTGGTGGAGATGAGTGGC+TGG | + | Chr7:88309727-88309746 | None:intergenic | 60.0% |
| ATGCCGTGGATGACGCCGTC+TGG | + | Chr7:88309847-88309866 | None:intergenic | 65.0% | |
| CGTCCAGACGGCGTCATCCA+CGG | - | Chr7:88309841-88309860 | MsG0780041213.01.T01:CDS | 65.0% | |
| CGTGGATGACGCCGTCTGGA+CGG | + | Chr7:88309843-88309862 | None:intergenic | 65.0% | |
| CTCCGGTGGGGTTTGTGGTG+AGG | + | Chr7:88309774-88309793 | None:intergenic | 65.0% | |
| GCTCGGCCAGTTCCGTGTAG+TGG | + | Chr7:88309498-88309517 | None:intergenic | 65.0% | |
| !! | GATTTGGGCGGTGGTGGTGG+TGG | + | Chr7:88309440-88309459 | None:intergenic | 65.0% |
| !! | GCCGGTGCTGGTGCTAGTGA+TGG | + | Chr7:88310060-88310079 | None:intergenic | 65.0% |
| !! | TGGTAGCACCGGTGGAGCTC+CGG | + | Chr7:88310013-88310032 | None:intergenic | 65.0% |
| AAACCCGCACCAGTCCCCGC+CGG | - | Chr7:88309991-88310010 | MsG0780041213.01.T01:CDS | 70.0% | |
| TGACGTGGACCACCGGGACC+TGG | + | Chr7:88310084-88310103 | None:intergenic | 70.0% | |
| !! | CTAGCACCAGCACCGGCACC+AGG | - | Chr7:88310063-88310082 | MsG0780041213.01.T01:CDS | 70.0% |
| !! | GCGGTGGTGGTGGTGGTGGT+GGG | + | Chr7:88309433-88309452 | None:intergenic | 70.0% |
| !! | TAGCACCGGTGGAGCTCCGG+CGG | + | Chr7:88310010-88310029 | None:intergenic | 70.0% |
| !! | TTGGGCGGTGGTGGTGGTGG+TGG | + | Chr7:88309437-88309456 | None:intergenic | 70.0% |
| AGTCCCCGCCGGAGCTCCAC+CGG | - | Chr7:88310002-88310021 | MsG0780041213.01.T01:CDS | 75.0% | |
| GGACCACCGGGACCTGGTGC+CGG | + | Chr7:88310078-88310097 | None:intergenic | 75.0% | |
| ! | AGCTCCGGCGGGGACTGGTG+CGG | + | Chr7:88309998-88310017 | None:intergenic | 75.0% |
| !! | AGCACCGGTGGAGCTCCGGC+GGG | + | Chr7:88310009-88310028 | None:intergenic | 75.0% |
| !! | CCAGCACCGGCACCAGGTCC+CGG | - | Chr7:88310069-88310088 | MsG0780041213.01.T01:CDS | 75.0% |
| !! | GGCGGTGGTGGTGGTGGTGG+TGG | + | Chr7:88309434-88309453 | None:intergenic | 75.0% |
| ! | GGTGGAGCTCCGGCGGGGAC+TGG | + | Chr7:88310003-88310022 | None:intergenic | 80.0% |
| !! | GCACCGGCACCAGGTCCCGG+TGG | - | Chr7:88310072-88310091 | MsG0780041213.01.T01:CDS | 80.0% |
| !! | GCACCGGTGGAGCTCCGGCG+GGG | + | Chr7:88310008-88310027 | None:intergenic | 80.0% |
| !! | GCTCCGGCGGGGACTGGTGC+GGG | + | Chr7:88309997-88310016 | None:intergenic | 80.0% |
| !!! | CCGGGACCTGGTGCCGGTGC+TGG | + | Chr7:88310072-88310091 | None:intergenic | 80.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| Chr7 | gene | 88309358 | 88310680 | 88309358 | ID=MsG0780041213.01;Name=MsG0780041213.01 |
| Chr7 | mRNA | 88309358 | 88310680 | 88309358 | ID=MsG0780041213.01.T01;Parent=MsG0780041213.01;Name=MsG0780041213.01.T01;_AED=0.35;_eAED=0.35;_QI=0|-1|0|1|-1|1|1|0|440 |
| Chr7 | exon | 88309358 | 88310680 | 88309358 | ID=MsG0780041213.01.T01:exon:3364;Parent=MsG0780041213.01.T01 |
| Chr7 | CDS | 88309358 | 88310680 | 88309358 | ID=MsG0780041213.01.T01:cds;Parent=MsG0780041213.01.T01 |
| Gene Sequence |
| Protein sequence |
