Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0180005479.01.T01 | XP_013469699.1 | 89.474 | 304 | 24 | 2 | 1 | 297 | 1 | 303 | 0 | 519 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0180005479.01.T01 | Q6Z9C8 | 53.774 | 212 | 67 | 5 | 9 | 192 | 39 | 247 | 9.87E-65 | 211 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0180005479.01.T01 | A0A072VPK5 | 89.474 | 304 | 24 | 2 | 1 | 297 | 1 | 303 | 0.0 | 519 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MsG0180005479.01 | MsG0280007883.01 | 0.822947 | 1.803801e-53 | 1.531749e-50 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0180005479.01.T01 | MTR_1g100777 | 89.474 | 304 | 24 | 2 | 1 | 297 | 1 | 303 | 0.0 | 519 |
| MsG0180005479.01.T01 | MTR_0020s0020 | 52.924 | 342 | 109 | 10 | 1 | 294 | 1 | 338 | 1.17e-95 | 286 |
| MsG0180005479.01.T01 | MTR_5g010680 | 51.220 | 246 | 85 | 7 | 5 | 216 | 6 | 250 | 3.57e-67 | 214 |
| MsG0180005479.01.T01 | MTR_3g101870 | 41.667 | 216 | 89 | 5 | 10 | 189 | 16 | 230 | 2.90e-48 | 165 |
| MsG0180005479.01.T01 | MTR_5g089170 | 44.385 | 187 | 89 | 2 | 10 | 189 | 17 | 195 | 1.04e-47 | 160 |
| MsG0180005479.01.T01 | MTR_5g017470 | 44.809 | 183 | 70 | 4 | 11 | 171 | 2 | 175 | 2.60e-43 | 150 |
| MsG0180005479.01.T01 | MTR_7g091370 | 35.521 | 259 | 112 | 5 | 12 | 263 | 16 | 226 | 9.42e-40 | 139 |
| MsG0180005479.01.T01 | MTR_5g029680 | 58.511 | 94 | 32 | 1 | 16 | 102 | 30 | 123 | 2.76e-33 | 127 |
| MsG0180005479.01.T01 | MTR_7g095680 | 53.191 | 94 | 37 | 1 | 16 | 102 | 47 | 140 | 6.25e-32 | 122 |
| MsG0180005479.01.T01 | MTR_4g088900 | 36.098 | 205 | 96 | 7 | 4 | 192 | 17 | 202 | 6.12e-31 | 115 |
| MsG0180005479.01.T01 | MTR_1g071360 | 54.255 | 94 | 36 | 1 | 16 | 102 | 30 | 123 | 1.56e-30 | 117 |
| MsG0180005479.01.T01 | MTR_1g071360 | 54.255 | 94 | 36 | 1 | 16 | 102 | 27 | 120 | 2.34e-30 | 117 |
| MsG0180005479.01.T01 | MTR_6g043060 | 51.429 | 105 | 41 | 2 | 17 | 111 | 21 | 125 | 7.09e-30 | 115 |
| MsG0180005479.01.T01 | MTR_1g102860 | 54.255 | 94 | 36 | 1 | 16 | 102 | 38 | 131 | 3.57e-29 | 114 |
| MsG0180005479.01.T01 | MTR_4g077970 | 36.313 | 179 | 86 | 3 | 18 | 189 | 12 | 169 | 7.45e-29 | 115 |
| MsG0180005479.01.T01 | MTR_8g087540 | 49.000 | 100 | 44 | 1 | 14 | 106 | 8 | 107 | 1.46e-28 | 113 |
| MsG0180005479.01.T01 | MTR_1g061170 | 38.012 | 171 | 70 | 3 | 12 | 175 | 43 | 184 | 2.49e-28 | 113 |
| MsG0180005479.01.T01 | MTR_2g100680 | 52.041 | 98 | 40 | 1 | 16 | 106 | 29 | 126 | 9.38e-28 | 112 |
| MsG0180005479.01.T01 | MTR_6g086805 | 49.515 | 103 | 45 | 1 | 9 | 104 | 2 | 104 | 4.02e-27 | 108 |
| MsG0180005479.01.T01 | MTR_8g083100 | 50.526 | 95 | 40 | 1 | 19 | 106 | 23 | 117 | 1.12e-26 | 109 |
| MsG0180005479.01.T01 | MTR_3g104550 | 44.860 | 107 | 52 | 1 | 16 | 115 | 44 | 150 | 1.12e-26 | 107 |
| MsG0180005479.01.T01 | MTR_2g100670 | 48.980 | 98 | 43 | 1 | 16 | 106 | 31 | 128 | 2.47e-26 | 105 |
| MsG0180005479.01.T01 | MTR_2g100670 | 50.000 | 96 | 41 | 1 | 16 | 104 | 139 | 234 | 1.33e-25 | 105 |
| MsG0180005479.01.T01 | MTR_2g017890 | 46.226 | 106 | 49 | 2 | 6 | 104 | 4 | 108 | 4.15e-25 | 103 |
| MsG0180005479.01.T01 | MTR_8g105780 | 49.462 | 93 | 39 | 2 | 18 | 102 | 22 | 114 | 2.84e-22 | 95.9 |
| MsG0180005479.01.T01 | MTR_4g045757 | 62.264 | 53 | 20 | 0 | 18 | 70 | 14 | 66 | 1.43e-17 | 76.3 |
| MsG0180005479.01.T01 | MTR_5g047190 | 36.264 | 91 | 44 | 1 | 26 | 102 | 1 | 91 | 2.02e-13 | 65.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0180005479.01.T01 | AT5G62020 | 44.322 | 273 | 120 | 6 | 11 | 260 | 16 | 279 | 3.55e-66 | 209 |
| MsG0180005479.01.T01 | AT4G11660 | 44.718 | 284 | 101 | 6 | 10 | 245 | 51 | 326 | 1.72e-60 | 197 |
| MsG0180005479.01.T01 | AT1G46264 | 44.118 | 204 | 87 | 4 | 13 | 189 | 29 | 232 | 1.18e-49 | 168 |
| MsG0180005479.01.T01 | AT4G36990 | 45.500 | 200 | 84 | 3 | 11 | 194 | 7 | 197 | 1.29e-45 | 155 |
| MsG0180005479.01.T01 | AT2G41690 | 42.222 | 180 | 97 | 1 | 16 | 188 | 38 | 217 | 9.24e-37 | 132 |
| MsG0180005479.01.T01 | AT4G17750 | 58.000 | 100 | 35 | 1 | 14 | 106 | 48 | 147 | 1.91e-33 | 128 |
| MsG0180005479.01.T01 | AT3G22830 | 57.292 | 96 | 34 | 1 | 14 | 102 | 57 | 152 | 6.04e-32 | 122 |
| MsG0180005479.01.T01 | AT1G32330 | 54.206 | 107 | 37 | 2 | 16 | 115 | 35 | 136 | 1.87e-31 | 122 |
| MsG0180005479.01.T01 | AT1G32330 | 54.206 | 107 | 37 | 2 | 16 | 115 | 35 | 136 | 1.89e-31 | 122 |
| MsG0180005479.01.T01 | AT3G02990 | 55.208 | 96 | 36 | 1 | 14 | 102 | 19 | 114 | 4.09e-30 | 118 |
| MsG0180005479.01.T01 | AT5G16820 | 56.522 | 92 | 33 | 1 | 18 | 102 | 27 | 118 | 4.18e-29 | 116 |
| MsG0180005479.01.T01 | AT5G16820 | 56.522 | 92 | 33 | 1 | 18 | 102 | 27 | 118 | 4.18e-29 | 116 |
| MsG0180005479.01.T01 | AT3G63350 | 48.148 | 108 | 48 | 2 | 1 | 101 | 12 | 118 | 1.36e-28 | 111 |
| MsG0180005479.01.T01 | AT5G43840 | 49.515 | 103 | 45 | 1 | 16 | 111 | 17 | 119 | 5.65e-28 | 109 |
| MsG0180005479.01.T01 | AT2G26150 | 44.954 | 109 | 53 | 1 | 16 | 117 | 42 | 150 | 8.48e-28 | 110 |
| MsG0180005479.01.T01 | AT2G26150 | 44.954 | 109 | 53 | 1 | 16 | 117 | 42 | 150 | 8.48e-28 | 110 |
| MsG0180005479.01.T01 | AT5G03720 | 38.788 | 165 | 65 | 3 | 18 | 175 | 55 | 190 | 1.50e-27 | 110 |
| MsG0180005479.01.T01 | AT5G03720 | 38.788 | 165 | 65 | 3 | 18 | 175 | 55 | 190 | 1.50e-27 | 110 |
| MsG0180005479.01.T01 | AT3G51910 | 45.283 | 106 | 51 | 1 | 16 | 114 | 27 | 132 | 2.69e-27 | 107 |
| MsG0180005479.01.T01 | AT5G54070 | 53.261 | 92 | 36 | 1 | 17 | 101 | 70 | 161 | 5.97e-27 | 107 |
| MsG0180005479.01.T01 | AT4G13980 | 44.643 | 112 | 52 | 2 | 19 | 120 | 24 | 135 | 6.97e-26 | 107 |
| MsG0180005479.01.T01 | AT3G24520 | 51.087 | 92 | 38 | 1 | 18 | 102 | 17 | 108 | 7.95e-25 | 102 |
| MsG0180005479.01.T01 | AT1G67970 | 39.394 | 132 | 72 | 2 | 18 | 141 | 19 | 150 | 1.18e-24 | 102 |
| MsG0180005479.01.T01 | AT5G45710 | 44.715 | 123 | 59 | 2 | 6 | 121 | 3 | 123 | 1.28e-23 | 99.0 |
| MsG0180005479.01.T01 | AT5G45710 | 44.715 | 123 | 59 | 2 | 6 | 121 | 3 | 123 | 1.28e-23 | 99.0 |
| MsG0180005479.01.T01 | AT4G18880 | 50.000 | 106 | 45 | 2 | 8 | 106 | 6 | 110 | 2.00e-23 | 99.4 |
| MsG0180005479.01.T01 | AT4G18870 | 42.391 | 92 | 43 | 3 | 14 | 95 | 139 | 230 | 1.18e-16 | 79.0 |
| MsG0180005479.01.T01 | AT4G18870 | 37.895 | 95 | 53 | 3 | 10 | 98 | 5 | 99 | 7.15e-16 | 76.6 |
Find 91 sgRNAs with CRISPR-Local
Find 100 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATCGCGTCGCCGTCAATTTC+AGG | 0.165701 | 1:+92257342 | MsG0180005479.01.T01:CDS |
| TATATCTTCTGAGAAGTTTC+TGG | 0.189089 | 1:-92257950 | None:intergenic |
| TTGTTGTGCTTAAAATATTT+AGG | 0.304096 | 1:-92257039 | None:intergenic |
| GAGGATGTCGTGCGCACGTT+TGG | 0.319885 | 1:+92257917 | MsG0180005479.01.T01:three_prime_UTR |
| AGGATGTCGTGCGCACGTTT+GGG | 0.322666 | 1:+92257918 | MsG0180005479.01.T01:three_prime_UTR |
| GGAACACGTTAGGTTAAGTT+AGG | 0.323421 | 1:+92257877 | MsG0180005479.01.T01:three_prime_UTR |
| TCGCTATCCCAGACAGCTTC+GGG | 0.353476 | 1:-92257653 | None:intergenic |
| CTGGAACAACGTTCATCGTT+TGG | 0.377410 | 1:+92256986 | MsG0180005479.01.T01:CDS |
| CCACATGAACAGAATGATTC+AGG | 0.388437 | 1:-92257734 | None:intergenic |
| GATAGAAACCCGAAGCTGTC+TGG | 0.392322 | 1:+92257645 | MsG0180005479.01.T01:CDS |
| GTCGTGCGCACGTTTGGGAC+TGG | 0.411525 | 1:+92257923 | MsG0180005479.01.T01:three_prime_UTR |
| AATCAGAGCCGTTTGATTCA+AGG | 0.418470 | 1:+92257763 | MsG0180005479.01.T01:CDS |
| ATCGCTATCCCAGACAGCTT+CGG | 0.419885 | 1:-92257654 | None:intergenic |
| GTGATTTCGTGGAATGATAC+TGG | 0.437195 | 1:+92256967 | MsG0180005479.01.T01:CDS |
| CATACGATGTTGTATCAGAT+AGG | 0.441629 | 1:+92257855 | MsG0180005479.01.T01:three_prime_UTR |
| CGAGAATGAGAGGTTGAGAA+AGG | 0.441779 | 1:+92257425 | MsG0180005479.01.T01:CDS |
| TCGTCGTTGCACCGCTTCTC+CGG | 0.449006 | 1:-92257606 | None:intergenic |
| GTCAATTTCAGGGGAGGAGC+AGG | 0.455410 | 1:+92257353 | MsG0180005479.01.T01:CDS |
| CCGGCATTGGAAGCTGCCGC+CGG | 0.458057 | 1:-92257282 | None:intergenic |
| TGTTACAGTCGTGCCGGCAT+TGG | 0.462484 | 1:-92257295 | None:intergenic |
| TCACCCTTCCTTGAATCAAA+CGG | 0.468104 | 1:-92257771 | None:intergenic |
| TTAGAGAATTCCCACCGATC+AGG | 0.468408 | 1:-92257189 | None:intergenic |
| TCGCGTCGCCGTCAATTTCA+GGG | 0.475190 | 1:+92257343 | MsG0180005479.01.T01:CDS |
| ATCAACAAGGTGATATGTCT+TGG | 0.476007 | 1:-92256926 | None:intergenic |
| CCACCAACGATGTGATTTCG+TGG | 0.481252 | 1:+92256956 | MsG0180005479.01.T01:CDS |
| AAGCAAATCCCTAGCGAAAA+CGG | 0.486758 | 1:-92257016 | None:intergenic |
| GAACACGTTAGGTTAAGTTA+GGG | 0.490772 | 1:+92257878 | MsG0180005479.01.T01:three_prime_UTR |
| ATGTTGCTCAACGGCGTCGC+CGG | 0.492568 | 1:+92257563 | MsG0180005479.01.T01:CDS |
| CCGGCGGCAGCTTCCAATGC+CGG | 0.495670 | 1:+92257282 | MsG0180005479.01.T01:CDS |
| GCAGTTAACAAAGGAAATAG+AGG | 0.498390 | 1:+92257455 | MsG0180005479.01.T01:CDS |
| CCACGAAATCACATCGTTGG+TGG | 0.498992 | 1:-92256956 | None:intergenic |
| GGGGTAATGTAGACAATTTG+AGG | 0.505016 | 1:+92257898 | MsG0180005479.01.T01:three_prime_UTR |
| GCGAAGGGAGCGAGAGGAGA+AGG | 0.505444 | 1:+92257681 | MsG0180005479.01.T01:CDS |
| TGCTCCTCCCCTGAAATTGA+CGG | 0.505469 | 1:-92257351 | None:intergenic |
| CTCCAGCATGGCTCCGTCGG+TGG | 0.505487 | 1:+92256858 | None:intergenic |
| TTCCTCGCCGTCAATTTCTC+CGG | 0.506147 | 1:+92257389 | MsG0180005479.01.T01:CDS |
| ATAGAAACCCGAAGCTGTCT+GGG | 0.517237 | 1:+92257646 | MsG0180005479.01.T01:CDS |
| TATCAGATAGGGAACACGTT+AGG | 0.524555 | 1:+92257867 | MsG0180005479.01.T01:three_prime_UTR |
| GCAGACGCTTCGTTTGTTAC+CGG | 0.526094 | 1:+92257587 | MsG0180005479.01.T01:CDS |
| TGAATCTTTCCGACGAGGCG+AGG | 0.528771 | 1:+92257212 | MsG0180005479.01.T01:CDS |
| CAACGACGAAGATGCGGCGG+TGG | 0.528814 | 1:+92257620 | MsG0180005479.01.T01:CDS |
| ATTCAAGGAAGGGTGAAAAG+AGG | 0.529327 | 1:+92257778 | MsG0180005479.01.T01:CDS |
| TGATATGTCTTGGTGAGAAA+CGG | 0.529943 | 1:-92256916 | None:intergenic |
| AGGAGAAGGACGGTGTATTG+AGG | 0.542287 | 1:+92257695 | MsG0180005479.01.T01:CDS |
| GAAAATCGTTTCAGCATCGC+CGG | 0.555017 | 1:+92257263 | MsG0180005479.01.T01:CDS |
| TGGGATAGCGATTGATGCGA+AGG | 0.556982 | 1:+92257665 | MsG0180005479.01.T01:CDS |
| CGCTATTAGACGAGAATGAG+AGG | 0.557066 | 1:+92257415 | MsG0180005479.01.T01:CDS |
| TTCTCGTCTAATAGCGCCGC+CGG | 0.558116 | 1:-92257408 | None:intergenic |
| GAATTACGCAAATTCTCAAA+CGG | 0.560736 | 1:+92257518 | MsG0180005479.01.T01:CDS |
| AAAAGTTGTACCTGATCGGT+GGG | 0.563579 | 1:+92257179 | MsG0180005479.01.T01:CDS |
| GAAATTGACGGCGACGCGAT+AGG | 0.563683 | 1:-92257339 | None:intergenic |
| CTCGCCGTCAATTTCTCCGG+CGG | 0.565722 | 1:+92257392 | MsG0180005479.01.T01:CDS |
| AGCGCCGCCGGAGAAATTGA+CGG | 0.567902 | 1:-92257396 | None:intergenic |
| AAATCCCTAGCGAAAACGGT+AGG | 0.568543 | 1:-92257012 | None:intergenic |
| TTCTCAAACGGAAGGCGGTG+CGG | 0.570972 | 1:+92257530 | MsG0180005479.01.T01:CDS |
| CAAACGGAAGGCGGTGCGGA+AGG | 0.571648 | 1:+92257534 | MsG0180005479.01.T01:CDS |
| GAGCCGTTTGATTCAAGGAA+GGG | 0.572438 | 1:+92257768 | MsG0180005479.01.T01:CDS |
| AACAAACGAAGCGTCTGCAC+CGG | 0.577210 | 1:-92257582 | None:intergenic |
| GCTCCGTCGGTGGAACATAA+CGG | 0.578392 | 1:+92256868 | MsG0180005479.01.T01:CDS |
| TTCGTTTGTTACCGGAGAAG+CGG | 0.579066 | 1:+92257595 | MsG0180005479.01.T01:CDS |
| ATACGATGTTGTATCAGATA+GGG | 0.589245 | 1:+92257856 | MsG0180005479.01.T01:three_prime_UTR |
| GGTGAGAAACGGCGTCGGAG+TGG | 0.597255 | 1:-92256905 | None:intergenic |
| CTTTCCGACGAGGCGAGGAA+CGG | 0.598393 | 1:+92257217 | MsG0180005479.01.T01:CDS |
| AGAGCCGTTTGATTCAAGGA+AGG | 0.601442 | 1:+92257767 | MsG0180005479.01.T01:CDS |
| ATTGATGCGAAGGGAGCGAG+AGG | 0.606253 | 1:+92257675 | MsG0180005479.01.T01:CDS |
| AATCCCTAGCGAAAACGGTA+GGG | 0.608706 | 1:-92257011 | None:intergenic |
| TACGCAAATTCTCAAACGGA+AGG | 0.609476 | 1:+92257522 | MsG0180005479.01.T01:CDS |
| ATTCCACGAAATCACATCGT+TGG | 0.610773 | 1:-92256959 | None:intergenic |
| CGCCGGAGAAATTGACGGCG+AGG | 0.610959 | 1:-92257391 | None:intergenic |
| GTCGCCGTCAATTTCAGGGG+AGG | 0.611650 | 1:+92257347 | MsG0180005479.01.T01:CDS |
| GCAAATTCTCAAACGGAAGG+CGG | 0.615095 | 1:+92257525 | MsG0180005479.01.T01:CDS |
| GCGGTGCAACGACGAAGATG+CGG | 0.623614 | 1:+92257614 | MsG0180005479.01.T01:CDS |
| TTCTCTGTGATATTCAGCGA+CGG | 0.625241 | 1:+92257241 | MsG0180005479.01.T01:CDS |
| CGCGTCGCCGTCAATTTCAG+GGG | 0.626408 | 1:+92257344 | MsG0180005479.01.T01:CDS |
| GACGCGATAGGCTTTGCTGT+CGG | 0.627107 | 1:-92257327 | None:intergenic |
| GAAGCCGTTCCTCGCCTCGT+CGG | 0.628152 | 1:-92257221 | None:intergenic |
| GGAGAACATGCAGTTAACAA+AGG | 0.636251 | 1:+92257446 | MsG0180005479.01.T01:CDS |
| CCTGAATCATTCTGTTCATG+TGG | 0.637037 | 1:+92257734 | MsG0180005479.01.T01:CDS |
| TGGTGGCGATTTCATCAACA+AGG | 0.649485 | 1:-92256939 | None:intergenic |
| GGGATAGCGATTGATGCGAA+GGG | 0.649839 | 1:+92257666 | MsG0180005479.01.T01:CDS |
| AGGGAGCGAGAGGAGAAGGA+CGG | 0.652383 | 1:+92257685 | MsG0180005479.01.T01:CDS |
| GTGAAAAGAGGAAAATGTTG+CGG | 0.654247 | 1:+92257790 | MsG0180005479.01.T01:CDS |
| AGGAAAAGAATGTTGCTCAA+CGG | 0.662127 | 1:+92257554 | MsG0180005479.01.T01:CDS |
| AATCGTTTCAGCATCGCCGG+CGG | 0.666535 | 1:+92257266 | MsG0180005479.01.T01:CDS |
| GTCTTGGTGAGAAACGGCGT+CGG | 0.667306 | 1:-92256910 | None:intergenic |
| ACGGTGTATTGAGGATGATG+TGG | 0.668550 | 1:+92257704 | MsG0180005479.01.T01:CDS |
| AACACGTTAGGTTAAGTTAG+GGG | 0.686043 | 1:+92257879 | MsG0180005479.01.T01:three_prime_UTR |
| GTGCAACGACGAAGATGCGG+CGG | 0.686538 | 1:+92257617 | MsG0180005479.01.T01:CDS |
| TCGCCGTTATGTTCCACCGA+CGG | 0.686749 | 1:-92256871 | None:intergenic |
| TCTAATGAATCTTTCCGACG+AGG | 0.711943 | 1:+92257207 | MsG0180005479.01.T01:CDS |
| CGGCACGACTGTAACAAAAG+CGG | 0.729434 | 1:+92257302 | MsG0180005479.01.T01:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTTTTATTTGTGTTAATTT+TGG | + | Chr1:92257138-92257157 | MsG0180005479.01.T01:intron | 10.0% |
| !! | TTGTTGTGCTTAAAATATTT+AGG | - | Chr1:92257042-92257061 | None:intergenic | 20.0% |
| !!! | GTTAATTTTGGTTATTTTCA+GGG | + | Chr1:92257150-92257169 | MsG0180005479.01.T01:intron | 20.0% |
| !!! | TGTTAATTTTGGTTATTTTC+AGG | + | Chr1:92257149-92257168 | MsG0180005479.01.T01:intron | 20.0% |
| ! | TTAAAAAAGTTGTACCTGAT+CGG | + | Chr1:92257175-92257194 | MsG0180005479.01.T01:CDS | 25.0% |
| !!! | GAATTACATAAGTATTGAGT+TGG | - | Chr1:92257083-92257102 | None:intergenic | 25.0% |
| ATACGATGTTGTATCAGATA+GGG | + | Chr1:92257856-92257875 | MsG0180005479.01.T01:three_prime_UTR | 30.0% | |
| GAATTACGCAAATTCTCAAA+CGG | + | Chr1:92257518-92257537 | MsG0180005479.01.T01:CDS | 30.0% | |
| ! | TATATCTTCTGAGAAGTTTC+TGG | - | Chr1:92257953-92257972 | None:intergenic | 30.0% |
| !!! | CAACTGTTGTTTTACTACTT+TGG | + | Chr1:92257994-92258013 | MsG0180005479.01.T01:three_prime_UTR | 30.0% |
| AACACGTTAGGTTAAGTTAG+GGG | + | Chr1:92257879-92257898 | MsG0180005479.01.T01:three_prime_UTR | 35.0% | |
| AGGAAAAGAATGTTGCTCAA+CGG | + | Chr1:92257554-92257573 | MsG0180005479.01.T01:CDS | 35.0% | |
| ATCAACAAGGTGATATGTCT+TGG | - | Chr1:92256929-92256948 | None:intergenic | 35.0% | |
| CATACGATGTTGTATCAGAT+AGG | + | Chr1:92257855-92257874 | MsG0180005479.01.T01:three_prime_UTR | 35.0% | |
| GAACACGTTAGGTTAAGTTA+GGG | + | Chr1:92257878-92257897 | MsG0180005479.01.T01:three_prime_UTR | 35.0% | |
| GCAGTTAACAAAGGAAATAG+AGG | + | Chr1:92257455-92257474 | MsG0180005479.01.T01:CDS | 35.0% | |
| GTGAAAAGAGGAAAATGTTG+CGG | + | Chr1:92257790-92257809 | MsG0180005479.01.T01:CDS | 35.0% | |
| TGATATGTCTTGGTGAGAAA+CGG | - | Chr1:92256919-92256938 | None:intergenic | 35.0% | |
| AAAAAGTTGTACCTGATCGG+TGG | + | Chr1:92257178-92257197 | MsG0180005479.01.T01:CDS | 40.0% | |
| AAAAGTTGTACCTGATCGGT+GGG | + | Chr1:92257179-92257198 | MsG0180005479.01.T01:CDS | 40.0% | |
| AAGCAAATCCCTAGCGAAAA+CGG | - | Chr1:92257019-92257038 | None:intergenic | 40.0% | |
| AATCAGAGCCGTTTGATTCA+AGG | + | Chr1:92257763-92257782 | MsG0180005479.01.T01:CDS | 40.0% | |
| ATTCAAGGAAGGGTGAAAAG+AGG | + | Chr1:92257778-92257797 | MsG0180005479.01.T01:CDS | 40.0% | |
| ATTCCACGAAATCACATCGT+TGG | - | Chr1:92256962-92256981 | None:intergenic | 40.0% | |
| CCACATGAACAGAATGATTC+AGG | - | Chr1:92257737-92257756 | None:intergenic | 40.0% | |
| CCTGAATCATTCTGTTCATG+TGG | + | Chr1:92257734-92257753 | MsG0180005479.01.T01:CDS | 40.0% | |
| GGAACACGTTAGGTTAAGTT+AGG | + | Chr1:92257877-92257896 | MsG0180005479.01.T01:three_prime_UTR | 40.0% | |
| GGAGAACATGCAGTTAACAA+AGG | + | Chr1:92257446-92257465 | MsG0180005479.01.T01:CDS | 40.0% | |
| GGGGTAATGTAGACAATTTG+AGG | + | Chr1:92257898-92257917 | MsG0180005479.01.T01:three_prime_UTR | 40.0% | |
| GTGATTTCGTGGAATGATAC+TGG | + | Chr1:92256967-92256986 | MsG0180005479.01.T01:CDS | 40.0% | |
| TACGCAAATTCTCAAACGGA+AGG | + | Chr1:92257522-92257541 | MsG0180005479.01.T01:CDS | 40.0% | |
| TATCAGATAGGGAACACGTT+AGG | + | Chr1:92257867-92257886 | MsG0180005479.01.T01:three_prime_UTR | 40.0% | |
| TCACCCTTCCTTGAATCAAA+CGG | - | Chr1:92257774-92257793 | None:intergenic | 40.0% | |
| TCTAATGAATCTTTCCGACG+AGG | + | Chr1:92257207-92257226 | MsG0180005479.01.T01:CDS | 40.0% | |
| TTCTCTGTGATATTCAGCGA+CGG | + | Chr1:92257241-92257260 | MsG0180005479.01.T01:CDS | 40.0% | |
| AAATCCCTAGCGAAAACGGT+AGG | - | Chr1:92257015-92257034 | None:intergenic | 45.0% | |
| AATCCCTAGCGAAAACGGTA+GGG | - | Chr1:92257014-92257033 | None:intergenic | 45.0% | |
| ACGGTGTATTGAGGATGATG+TGG | + | Chr1:92257704-92257723 | MsG0180005479.01.T01:CDS | 45.0% | |
| AGAGCCGTTTGATTCAAGGA+AGG | + | Chr1:92257767-92257786 | MsG0180005479.01.T01:CDS | 45.0% | |
| ATAGAAACCCGAAGCTGTCT+GGG | + | Chr1:92257646-92257665 | MsG0180005479.01.T01:CDS | 45.0% | |
| CGAGAATGAGAGGTTGAGAA+AGG | + | Chr1:92257425-92257444 | MsG0180005479.01.T01:CDS | 45.0% | |
| CGCTATTAGACGAGAATGAG+AGG | + | Chr1:92257415-92257434 | MsG0180005479.01.T01:CDS | 45.0% | |
| CTGGAACAACGTTCATCGTT+TGG | + | Chr1:92256986-92257005 | MsG0180005479.01.T01:CDS | 45.0% | |
| GAAAATCGTTTCAGCATCGC+CGG | + | Chr1:92257263-92257282 | MsG0180005479.01.T01:CDS | 45.0% | |
| GAGCCGTTTGATTCAAGGAA+GGG | + | Chr1:92257768-92257787 | MsG0180005479.01.T01:CDS | 45.0% | |
| GCAAATTCTCAAACGGAAGG+CGG | + | Chr1:92257525-92257544 | MsG0180005479.01.T01:CDS | 45.0% | |
| TTAGAGAATTCCCACCGATC+AGG | - | Chr1:92257192-92257211 | None:intergenic | 45.0% | |
| ! | TGGTGGCGATTTCATCAACA+AGG | - | Chr1:92256942-92256961 | None:intergenic | 45.0% |
| ! | TTCGTTTGTTACCGGAGAAG+CGG | + | Chr1:92257595-92257614 | MsG0180005479.01.T01:CDS | 45.0% |
| AGGAGAAGGACGGTGTATTG+AGG | + | Chr1:92257695-92257714 | MsG0180005479.01.T01:CDS | 50.0% | |
| ATCGCTATCCCAGACAGCTT+CGG | - | Chr1:92257657-92257676 | None:intergenic | 50.0% | |
| CCACCAACGATGTGATTTCG+TGG | + | Chr1:92256956-92256975 | MsG0180005479.01.T01:CDS | 50.0% | |
| CCACGAAATCACATCGTTGG+TGG | - | Chr1:92256959-92256978 | None:intergenic | 50.0% | |
| CGGCACGACTGTAACAAAAG+CGG | + | Chr1:92257302-92257321 | MsG0180005479.01.T01:CDS | 50.0% | |
| GATAGAAACCCGAAGCTGTC+TGG | + | Chr1:92257645-92257664 | MsG0180005479.01.T01:CDS | 50.0% | |
| GGGATAGCGATTGATGCGAA+GGG | + | Chr1:92257666-92257685 | MsG0180005479.01.T01:CDS | 50.0% | |
| TGCTCCTCCCCTGAAATTGA+CGG | - | Chr1:92257354-92257373 | None:intergenic | 50.0% | |
| TGGGATAGCGATTGATGCGA+AGG | + | Chr1:92257665-92257684 | MsG0180005479.01.T01:CDS | 50.0% | |
| TTCCTCGCCGTCAATTTCTC+CGG | + | Chr1:92257389-92257408 | MsG0180005479.01.T01:CDS | 50.0% | |
| ! | AACAAACGAAGCGTCTGCAC+CGG | - | Chr1:92257585-92257604 | None:intergenic | 50.0% |
| ! | CGCTTTTGTTACAGTCGTGC+CGG | - | Chr1:92257304-92257323 | None:intergenic | 50.0% |
| ! | GAACCCTACCGTTTTCGCTA+GGG | + | Chr1:92257008-92257027 | MsG0180005479.01.T01:CDS | 50.0% |
| ! | GCAGACGCTTCGTTTGTTAC+CGG | + | Chr1:92257587-92257606 | MsG0180005479.01.T01:CDS | 50.0% |
| AATCGTTTCAGCATCGCCGG+CGG | + | Chr1:92257266-92257285 | MsG0180005479.01.T01:CDS | 55.0% | |
| AGGATGTCGTGCGCACGTTT+GGG | + | Chr1:92257918-92257937 | MsG0180005479.01.T01:three_prime_UTR | 55.0% | |
| ATCGCGTCGCCGTCAATTTC+AGG | + | Chr1:92257342-92257361 | MsG0180005479.01.T01:CDS | 55.0% | |
| ATTGATGCGAAGGGAGCGAG+AGG | + | Chr1:92257675-92257694 | MsG0180005479.01.T01:CDS | 55.0% | |
| GAAATTGACGGCGACGCGAT+AGG | - | Chr1:92257342-92257361 | None:intergenic | 55.0% | |
| GCTCCGTCGGTGGAACATAA+CGG | + | Chr1:92256868-92256887 | MsG0180005479.01.T01:CDS | 55.0% | |
| GTCAATTTCAGGGGAGGAGC+AGG | + | Chr1:92257353-92257372 | MsG0180005479.01.T01:CDS | 55.0% | |
| GTCTTGGTGAGAAACGGCGT+CGG | - | Chr1:92256913-92256932 | None:intergenic | 55.0% | |
| TCGCCGTTATGTTCCACCGA+CGG | - | Chr1:92256874-92256893 | None:intergenic | 55.0% | |
| TCGCGTCGCCGTCAATTTCA+GGG | + | Chr1:92257343-92257362 | MsG0180005479.01.T01:CDS | 55.0% | |
| TCGCTATCCCAGACAGCTTC+GGG | - | Chr1:92257656-92257675 | None:intergenic | 55.0% | |
| TGAATCTTTCCGACGAGGCG+AGG | + | Chr1:92257212-92257231 | MsG0180005479.01.T01:CDS | 55.0% | |
| TTCTCAAACGGAAGGCGGTG+CGG | + | Chr1:92257530-92257549 | MsG0180005479.01.T01:CDS | 55.0% | |
| TTCTCGTCTAATAGCGCCGC+CGG | - | Chr1:92257411-92257430 | None:intergenic | 55.0% | |
| ! | GACGCGATAGGCTTTGCTGT+CGG | - | Chr1:92257330-92257349 | None:intergenic | 55.0% |
| ! | GGAACCCTACCGTTTTCGCT+AGG | + | Chr1:92257007-92257026 | MsG0180005479.01.T01:CDS | 55.0% |
| ! | TGTTACAGTCGTGCCGGCAT+TGG | - | Chr1:92257298-92257317 | None:intergenic | 55.0% |
| AGCGCCGCCGGAGAAATTGA+CGG | - | Chr1:92257399-92257418 | None:intergenic | 60.0% | |
| AGGGAGCGAGAGGAGAAGGA+CGG | + | Chr1:92257685-92257704 | MsG0180005479.01.T01:CDS | 60.0% | |
| ATGTTGCTCAACGGCGTCGC+CGG | + | Chr1:92257563-92257582 | MsG0180005479.01.T01:CDS | 60.0% | |
| CGCGTCGCCGTCAATTTCAG+GGG | + | Chr1:92257344-92257363 | MsG0180005479.01.T01:CDS | 60.0% | |
| CTCGCCGTCAATTTCTCCGG+CGG | + | Chr1:92257392-92257411 | MsG0180005479.01.T01:CDS | 60.0% | |
| CTTTCCGACGAGGCGAGGAA+CGG | + | Chr1:92257217-92257236 | MsG0180005479.01.T01:CDS | 60.0% | |
| GAGGATGTCGTGCGCACGTT+TGG | + | Chr1:92257917-92257936 | MsG0180005479.01.T01:three_prime_UTR | 60.0% | |
| GCGGTGCAACGACGAAGATG+CGG | + | Chr1:92257614-92257633 | MsG0180005479.01.T01:CDS | 60.0% | |
| GTCGCCGTCAATTTCAGGGG+AGG | + | Chr1:92257347-92257366 | MsG0180005479.01.T01:CDS | 60.0% | |
| GTGCAACGACGAAGATGCGG+CGG | + | Chr1:92257617-92257636 | MsG0180005479.01.T01:CDS | 60.0% | |
| TCGTCGTTGCACCGCTTCTC+CGG | - | Chr1:92257609-92257628 | None:intergenic | 60.0% | |
| CAAACGGAAGGCGGTGCGGA+AGG | + | Chr1:92257534-92257553 | MsG0180005479.01.T01:CDS | 65.0% | |
| CAACGACGAAGATGCGGCGG+TGG | + | Chr1:92257620-92257639 | MsG0180005479.01.T01:CDS | 65.0% | |
| CGCCGGAGAAATTGACGGCG+AGG | - | Chr1:92257394-92257413 | None:intergenic | 65.0% | |
| GAAGCCGTTCCTCGCCTCGT+CGG | - | Chr1:92257224-92257243 | None:intergenic | 65.0% | |
| GCGAAGGGAGCGAGAGGAGA+AGG | + | Chr1:92257681-92257700 | MsG0180005479.01.T01:CDS | 65.0% | |
| ! | GGTGAGAAACGGCGTCGGAG+TGG | - | Chr1:92256908-92256927 | None:intergenic | 65.0% |
| ! | GTCGTGCGCACGTTTGGGAC+TGG | + | Chr1:92257923-92257942 | MsG0180005479.01.T01:three_prime_UTR | 65.0% |
| CCGGCGGCAGCTTCCAATGC+CGG | + | Chr1:92257282-92257301 | MsG0180005479.01.T01:CDS | 70.0% | |
| ! | CCGGCATTGGAAGCTGCCGC+CGG | - | Chr1:92257285-92257304 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| Chr1 | gene | 92256865 | 92258028 | 92256865 | ID=MsG0180005479.01;Name=MsG0180005479.01 |
| Chr1 | mRNA | 92256865 | 92258028 | 92256865 | ID=MsG0180005479.01.T01;Parent=MsG0180005479.01;Name=MsG0180005479.01.T01;_AED=0.17;_eAED=0.17;_QI=0|0|0.5|1|1|1|2|174|297 |
| Chr1 | exon | 92256865 | 92257074 | 92256865 | ID=MsG0180005479.01.T01:exon:9854;Parent=MsG0180005479.01.T01 |
| Chr1 | exon | 92257171 | 92258028 | 92257171 | ID=MsG0180005479.01.T01:exon:9855;Parent=MsG0180005479.01.T01 |
| Chr1 | CDS | 92256865 | 92257074 | 92256865 | ID=MsG0180005479.01.T01:cds;Parent=MsG0180005479.01.T01 |
| Chr1 | CDS | 92257171 | 92257854 | 92257171 | ID=MsG0180005479.01.T01:cds;Parent=MsG0180005479.01.T01 |
| Chr1 | three_prime_UTR | 92257855 | 92258028 | 92257855 | ID=MsG0180005479.01.T01:three_prime_utr;Parent=MsG0180005479.01.T01 |
| Gene Sequence |
| Protein sequence |
