AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0180005484.01

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0180005484.01.T01 MTR_1g100797 73.864 352 14 3 1 302 1 324 9.19e-174 491
MsG0180005484.01.T01 MTR_0020s0130 64.205 352 48 4 1 302 1 324 1.41e-146 422
MsG0180005484.01.T01 MTR_1g100797 82.273 220 7 1 115 302 1 220 2.35e-123 360
MsG0180005484.01.T01 MTR_4g129470 42.005 369 126 9 1 317 7 339 8.75e-81 254
MsG0180005484.01.T01 MTR_4g129470 39.916 238 101 5 114 317 22 251 1.48e-47 165
MsG0180005484.01.T01 MTR_2g096760 26.519 362 169 14 1 302 1 325 1.36e-11 65.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0180005484.01.T01 AT5G07270 58.523 352 61 5 1 302 1 317 1.55e-132 387
MsG0180005484.01.T01 AT5G57740 38.547 358 130 6 1 304 7 328 1.26e-74 238

Find 70 sgRNAs with CRISPR-Local

Find 208 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTTCATATGGCTTCGTTAAA+TGG 0.148724 1:-92298768 MsG0180005484.01.T01:CDS
TGAAATAACTGCAGAGAATA+TGG 0.222654 1:-92297279 MsG0180005484.01.T01:intron
CTTGCTAAATACTCCACTTT+TGG 0.283710 1:-92299967 MsG0180005484.01.T01:CDS
TCTTTCGGATGTTCTGCTTC+TGG 0.312616 1:-92300063 MsG0180005484.01.T01:CDS
GTTAATTCAAGAAATTATTC+TGG 0.313591 1:-92299778 MsG0180005484.01.T01:CDS
CCTTAGATGGGTAATTCTTT+CGG 0.313919 1:-92300078 None:intergenic
TCATTGGCTTGAACCTTTGC+TGG 0.318163 1:-92298263 MsG0180005484.01.T01:CDS
CCTTCTGCAGCCACTGAAAC+TGG 0.353725 1:+92297196 None:intergenic
AGGTGTTACGGCATCAGAAC+TGG 0.364298 1:+92298237 None:intergenic
CTCTTGATATTGCTAGGATG+TGG 0.374294 1:-92298291 MsG0180005484.01.T01:CDS
AGCTGTCTTATTAACAAACT+TGG 0.414458 1:+92298809 None:intergenic
GTGGAGTATTTAGCAAGATA+AGG 0.416003 1:+92299973 None:intergenic
CTTTGAAGAAAATAATCAAA+AGG 0.440086 1:+92299874 None:intergenic
TTTGCTTTGTTGCTTGAGAA+TGG 0.443572 1:-92299808 MsG0180005484.01.T01:CDS
TCTTATTAACAAACTTGGAC+AGG 0.443919 1:+92298814 None:intergenic
TGGTATCACTGCACTTCATA+TGG 0.452987 1:-92298781 MsG0180005484.01.T01:CDS
TTCTGCTTCTGGCGAGAGAC+TGG 0.454629 1:-92300052 MsG0180005484.01.T01:CDS
ATGAGAGCTGATTATCTTAG+TGG 0.461490 1:-92299197 MsG0180005484.01.T01:CDS
CGAGCATGTATCACATCATA+AGG 0.466665 1:+92299092 None:intergenic
TCTTGATATTGCTAGGATGT+GGG 0.467823 1:-92298290 MsG0180005484.01.T01:CDS
TTCAAGAAATTATTCTGGCC+AGG 0.482931 1:-92299773 MsG0180005484.01.T01:CDS
GGATGACTTTGAATTGCAAC+GGG 0.483987 1:-92298410 MsG0180005484.01.T01:intron
TTTGAAGAAAATAATCAAAA+GGG 0.495372 1:+92299875 None:intergenic
TTTCAGATCCTCCTTGCAAG+AGG 0.511356 1:-92298441 MsG0180005484.01.T01:intron
AGAATTAAGACCACCAAAAG+TGG 0.512916 1:+92299954 None:intergenic
ATGAGGGAAGGAAGGTGTTA+CGG 0.523633 1:+92298225 None:intergenic
TTTGTTAATAAGACAGCTGA+TGG 0.529443 1:-92298804 MsG0180005484.01.T01:CDS
GGCTTCCTCTTGATATTGCT+AGG 0.533491 1:-92298297 MsG0180005484.01.T01:CDS
CGGATGACTTTGAATTGCAA+CGG 0.539267 1:-92298411 MsG0180005484.01.T01:CDS
CTGGTATCTGCGGCGAGGGA+TGG 0.549798 1:-92300033 MsG0180005484.01.T01:CDS
CACTCATGAGAGGCAAGGAC+AGG 0.552084 1:+92298194 None:intergenic
GCCACTGAAACTGGCTCTCG+AGG 0.557749 1:+92297205 None:intergenic
TAATTTGAATGAGGGAAGGA+AGG 0.559373 1:+92298217 None:intergenic
CATAAAGAGAGAGTGGTACC+TGG 0.560107 1:+92299755 None:intergenic
TCCGACTTGCACCTCTTGCA+AGG 0.561225 1:+92298430 None:intergenic
AAGGACAGGTAATTTGAATG+AGG 0.567827 1:+92298208 None:intergenic
TCAGAACTGGGTGCCAGCAA+AGG 0.569660 1:+92298250 None:intergenic
ACAAAATTCAATATCATCAG+AGG 0.573069 1:+92297236 None:intergenic
TGAGAGCTGATTATCTTAGT+GGG 0.575664 1:-92299196 MsG0180005484.01.T01:CDS
GAGACTGGTATCTGCGGCGA+GGG 0.576518 1:-92300037 MsG0180005484.01.T01:CDS
CCAGTTTCAGTGGCTGCAGA+AGG 0.577679 1:-92297196 MsG0180005484.01.T01:intron
CAGGTAATTTGAATGAGGGA+AGG 0.577813 1:+92298213 None:intergenic
GCCTCGAGAGCCAGTTTCAG+TGG 0.580837 1:-92297206 MsG0180005484.01.T01:CDS
CTTGATATTGCTAGGATGTG+GGG 0.585997 1:-92298289 MsG0180005484.01.T01:CDS
TGAGTGTTATCAACATAGCC+AGG 0.588986 1:-92298177 MsG0180005484.01.T01:intron
CTTCACTTTGCAGCGATGAG+CGG 0.589939 1:-92299164 MsG0180005484.01.T01:CDS
TTAGCAGATGCAAAATGAAG+AGG 0.604051 1:+92299931 None:intergenic
GGTGTTACGGCATCAGAACT+GGG 0.608863 1:+92298238 None:intergenic
AGAGGGACATAAAGAGAGAG+TGG 0.611632 1:+92299748 None:intergenic
CTTATTAACAAACTTGGACA+GGG 0.616596 1:+92298815 None:intergenic
ATCACATCATAAGGAGCACT+CGG 0.617287 1:+92299101 None:intergenic
AGGACAGGTAATTTGAATGA+GGG 0.618249 1:+92298209 None:intergenic
GCTCGATCAGATGCTGAACA+AGG 0.621520 1:-92299074 MsG0180005484.01.T01:CDS
GGTGGTGTATCAAATGTGAA+AGG 0.622255 1:-92299053 MsG0180005484.01.T01:CDS
TTGATATTGCTAGGATGTGG+GGG 0.625369 1:-92298288 MsG0180005484.01.T01:CDS
CACATCCTAGCAATATCAAG+AGG 0.626133 1:+92298292 None:intergenic
GTTAATAAGACAGCTGATGG+TGG 0.627337 1:-92298801 MsG0180005484.01.T01:CDS
AAGATGTATTAGACTTGTTG+TGG 0.638569 1:-92299135 MsG0180005484.01.T01:CDS
AAAGCATCTTCGCTTCCACA+AGG 0.645699 1:+92300007 None:intergenic
ATCTGCTAAGGGTCATAACG+AGG 0.649734 1:-92299917 MsG0180005484.01.T01:CDS
TCCTTGCAAGAGGTGCAAGT+CGG 0.654147 1:-92298431 MsG0180005484.01.T01:CDS
TGAAAGGCAAACATGAACAA+AGG 0.657279 1:-92299037 MsG0180005484.01.T01:intron
GATAACACTCATGAGAGGCA+AGG 0.665969 1:+92298189 None:intergenic
AGAGACTGGTATCTGCGGCG+AGG 0.671750 1:-92300038 MsG0180005484.01.T01:CDS
GAGCTGATTATCTTAGTGGG+AGG 0.673518 1:-92299193 MsG0180005484.01.T01:CDS
GGCGAGGGATGGTGACCTTG+TGG 0.685460 1:-92300022 MsG0180005484.01.T01:CDS
ATGTTGATAACACTCATGAG+AGG 0.697155 1:+92298184 None:intergenic
GACTTGCACCTCTTGCAAGG+AGG 0.715403 1:+92298433 None:intergenic
TGGCGAGAGACTGGTATCTG+CGG 0.742633 1:-92300043 MsG0180005484.01.T01:CDS
CGATCAGATGCTGAACAAGG+TGG 0.752982 1:-92299071 MsG0180005484.01.T01:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ACATGTATAAAATAAAAAAA+GGG + Chr1:92297517-92297536 None:intergenic 10.0%
!! ATATAAGATTTATAAATAGA+AGG + Chr1:92299559-92299578 None:intergenic 10.0%
!! TATAAGATTTATAAATAGAA+GGG + Chr1:92299558-92299577 None:intergenic 10.0%
!!! TTAGATATATTAGAATTTTT+TGG - Chr1:92297475-92297494 MsG0180005484.01.T01:intron 10.0%
!! CACATGTATAAAATAAAAAA+AGG + Chr1:92297518-92297537 None:intergenic 15.0%
!! TTTATTCTGCATTAAAAATA+TGG - Chr1:92299832-92299851 MsG0180005484.01.T01:CDS 15.0%
!! TTTGAAGAAAATAATCAAAA+GGG + Chr1:92297091-92297110 None:intergenic 15.0%
!!! AACATTATTTTAGTATTCAA+AGG + Chr1:92298493-92298512 None:intergenic 15.0%
!!! ATTTATTTGTTTTTCTTTCA+TGG - Chr1:92297119-92297138 MsG0180005484.01.T01:intron 15.0%
!!! TATTTTGATATGATTCTATT+CGG - Chr1:92297344-92297363 MsG0180005484.01.T01:intron 15.0%
!!! TTAATTTTGTAGATTACAAA+TGG - Chr1:92299132-92299151 MsG0180005484.01.T01:CDS 15.0%
!!! TTTATTTGTTTTTCTTTCAT+GGG - Chr1:92297120-92297139 MsG0180005484.01.T01:intron 15.0%
!! AACTAATGTAATCTGATTTA+GGG - Chr1:92298362-92298381 MsG0180005484.01.T01:intron 20.0%
!! AGATAACTAAAATAACAAAC+AGG - Chr1:92298877-92298896 MsG0180005484.01.T01:intron 20.0%
!! ATAAAAACTATAGTTAAGTC+AGG + Chr1:92298079-92298098 None:intergenic 20.0%
!! ATCATGAATTCATGATATAA+TGG - Chr1:92297248-92297267 MsG0180005484.01.T01:CDS 20.0%
!! ATGCATATTACATAATGAAA+AGG + Chr1:92297961-92297980 None:intergenic 20.0%
!! GTTAATTCAAGAAATTATTC+TGG - Chr1:92297185-92297204 MsG0180005484.01.T01:intron 20.0%
!! TAACTAATGTAATCTGATTT+AGG - Chr1:92298361-92298380 MsG0180005484.01.T01:intron 20.0%
!! TAGATACTTAATTGTGTAAA+TGG - Chr1:92298009-92298028 MsG0180005484.01.T01:intron 20.0%
!! TGTATAAAATAAAAAAAGGG+TGG + Chr1:92297514-92297533 None:intergenic 20.0%
!!! AACACTTATAGAGATAATTT+TGG - Chr1:92298906-92298925 MsG0180005484.01.T01:intron 20.0%
!!! ATCTAAAAAGATTTTTCACA+AGG + Chr1:92298861-92298880 None:intergenic 20.0%
!!! ATTACATTAGTTAAGTTGAA+GGG + Chr1:92298354-92298373 None:intergenic 20.0%
!!! CTTTGAAGAAAATAATCAAA+AGG + Chr1:92297092-92297111 None:intergenic 20.0%
!!! GTTGATTTGAATTTTAAAGA+CGG - Chr1:92297576-92297595 MsG0180005484.01.T01:intron 20.0%
!!! TAATTTATCTTTTCTTTGTG+CGG + Chr1:92299077-92299096 None:intergenic 20.0%
!!! TCATGATATAATGGTTTTAA+TGG - Chr1:92297257-92297276 MsG0180005484.01.T01:CDS 20.0%
!!! TCTAAAAAGATTTTTCACAA+GGG + Chr1:92298860-92298879 None:intergenic 20.0%
! AATATTCAAGCTTCATGTTA+TGG + Chr1:92297457-92297476 None:intergenic 25.0%
! ACAAAATTCAATATCATCAG+AGG + Chr1:92299730-92299749 None:intergenic 25.0%
! ACTAATGTAATCTGATTTAG+GGG - Chr1:92298363-92298382 MsG0180005484.01.T01:intron 25.0%
! AGTATCTATACTTATTCAAG+TGG + Chr1:92297997-92298016 None:intergenic 25.0%
! AGTGTTCTATCAAAAACATT+TGG + Chr1:92299275-92299294 None:intergenic 25.0%
! ATAAGCAATCAGATCAATAT+TGG - Chr1:92297403-92297422 MsG0180005484.01.T01:intron 25.0%
! CAAACAAACAGATATTCAAA+AGG + Chr1:92299807-92299826 None:intergenic 25.0%
! GTATCTATACTTATTCAAGT+GGG + Chr1:92297996-92298015 None:intergenic 25.0%
! TCATGATTCAAATCATAAGA+GGG + Chr1:92297235-92297254 None:intergenic 25.0%
! TTCATGATTCAAATCATAAG+AGG + Chr1:92297236-92297255 None:intergenic 25.0%
! TTCTAGTATACATTAAATGC+AGG + Chr1:92299502-92299521 None:intergenic 25.0%
!! CAACTTTACATTTTAGATTC+TGG + Chr1:92299897-92299916 None:intergenic 25.0%
!! CAGAATCTAAAATGTAAAGT+TGG - Chr1:92299895-92299914 MsG0180005484.01.T01:CDS 25.0%
!! GATTATTGGTGATCATAATT+AGG - Chr1:92298931-92298950 MsG0180005484.01.T01:intron 25.0%
!! GATTTACTGACTGAAAAATA+TGG - Chr1:92297541-92297560 MsG0180005484.01.T01:intron 25.0%
!! TCCTTTTCTACTTTAAATGA+GGG + Chr1:92298990-92299009 None:intergenic 25.0%
!! TTCCTTTTCTACTTTAAATG+AGG + Chr1:92298991-92299010 None:intergenic 25.0%
!!! AATGGTTTTAATGGATTAGA+TGG - Chr1:92297266-92297285 MsG0180005484.01.T01:CDS 25.0%
!!! AGATAATTTTGGCAGATTAT+TGG - Chr1:92298917-92298936 MsG0180005484.01.T01:intron 25.0%
!!! ATGTTTTTGATAGAACACTA+TGG - Chr1:92299276-92299295 MsG0180005484.01.T01:intron 25.0%
!!! GATTACATTAGTTAAGTTGA+AGG + Chr1:92298355-92298374 None:intergenic 25.0%
!!! TTACATTAGTTAAGTTGAAG+GGG + Chr1:92298353-92298372 None:intergenic 25.0%
!!! TTGTTACACTTTTTAGAGTT+TGG - Chr1:92299109-92299128 MsG0180005484.01.T01:CDS 25.0%
AATCAGATCAATATTGGATC+TGG - Chr1:92297409-92297428 MsG0180005484.01.T01:intron 30.0%
ACTACAAAATATCTTAGGCT+AGG + Chr1:92299606-92299625 None:intergenic 30.0%
AGATACCTATTAATCCATTG+AGG + Chr1:92298292-92298311 None:intergenic 30.0%
AGCTGACTACAAAATATCTT+AGG + Chr1:92299611-92299630 None:intergenic 30.0%
ATCATAATTAGGAGAACCAT+TGG - Chr1:92298942-92298961 MsG0180005484.01.T01:intron 30.0%
ATTTCATTATGGAACCTCAA+TGG - Chr1:92298275-92298294 MsG0180005484.01.T01:CDS 30.0%
CAAATCTCGAAAAGATTTAG+AGG - Chr1:92299235-92299254 MsG0180005484.01.T01:intron 30.0%
CATATGCTAATAAATATCCC+AGG - Chr1:92298321-92298340 MsG0180005484.01.T01:intron 30.0%
CCTAAAGAAGTGATTATGTT+AGG - Chr1:92299863-92299882 MsG0180005484.01.T01:CDS 30.0%
CCTAACATAATCACTTCTTT+AGG + Chr1:92299866-92299885 None:intergenic 30.0%
CTAAAATAACAAACAGGTAG+AGG - Chr1:92298883-92298902 MsG0180005484.01.T01:intron 30.0%
CTATGACTCTATTCAATATC+AGG - Chr1:92297741-92297760 MsG0180005484.01.T01:intron 30.0%
CTTATTAACAAACTTGGACA+GGG + Chr1:92298151-92298170 None:intergenic 30.0%
GATATTCAAAAGGTAGAGAA+TGG + Chr1:92299797-92299816 None:intergenic 30.0%
GATTAGATGGTTACATTTAG+TGG - Chr1:92297279-92297298 MsG0180005484.01.T01:intron 30.0%
TCTTATTAACAAACTTGGAC+AGG + Chr1:92298152-92298171 None:intergenic 30.0%
TCTTCTGTGACATTTCATTA+TGG - Chr1:92298264-92298283 MsG0180005484.01.T01:CDS 30.0%
TGAAATAACTGCAGAGAATA+TGG - Chr1:92299684-92299703 MsG0180005484.01.T01:intron 30.0%
TTTCACAAGGGAAAAAAGTT+GGG + Chr1:92298848-92298867 None:intergenic 30.0%
TTTGTTAATAAGACAGCTGA+TGG - Chr1:92298159-92298178 MsG0180005484.01.T01:intron 30.0%
! AGCTGTCTTATTAACAAACT+TGG + Chr1:92298157-92298176 None:intergenic 30.0%
! ATGGTGAGATTGATTTCATT+TGG - Chr1:92298028-92298047 MsG0180005484.01.T01:intron 30.0%
! CCTTTTCTACTTTAAATGAG+GGG + Chr1:92298989-92299008 None:intergenic 30.0%
! GGAAATTTAAAATGCTGTTC+AGG - Chr1:92298421-92298440 MsG0180005484.01.T01:CDS 30.0%
! GTGTTTGAAATGAGGAATTT+GGG - Chr1:92299968-92299987 MsG0180005484.01.T01:CDS 30.0%
! TGTGTTTGAAATGAGGAATT+TGG - Chr1:92299967-92299986 MsG0180005484.01.T01:CDS 30.0%
! TTCTTTCCTGTAACGTTTTA+AGG - Chr1:92298053-92298072 MsG0180005484.01.T01:intron 30.0%
! TTTTCACAAGGGAAAAAAGT+TGG + Chr1:92298849-92298868 None:intergenic 30.0%
!! AAGATGTATTAGACTTGTTG+TGG - Chr1:92297828-92297847 MsG0180005484.01.T01:intron 30.0%
!! TTTGTTTTTCTTTCATGGGT+TGG - Chr1:92297124-92297143 MsG0180005484.01.T01:intron 30.0%
!! TTTTAAGAATCACTAGTGTG+TGG - Chr1:92297717-92297736 MsG0180005484.01.T01:intron 30.0%
AAGCTTGTAGATATGGTCAT+TGG - Chr1:92297608-92297627 MsG0180005484.01.T01:intron 35.0%
AAGGACAGGTAATTTGAATG+AGG + Chr1:92298758-92298777 None:intergenic 35.0%
AGAATTAAGACCACCAAAAG+TGG + Chr1:92297012-92297031 None:intergenic 35.0%
AGATTTAGAGGTCATTGAGT+TGG - Chr1:92299247-92299266 MsG0180005484.01.T01:intron 35.0%
AGCTTGTAGATATGGTCATT+GGG - Chr1:92297609-92297628 MsG0180005484.01.T01:intron 35.0%
AGGACAGGTAATTTGAATGA+GGG + Chr1:92298757-92298776 None:intergenic 35.0%
ATAGTGTAAGTGATGCCATT+AGG - Chr1:92300036-92300055 MsG0180005484.01.T01:CDS 35.0%
ATGAGAGCTGATTATCTTAG+TGG - Chr1:92297766-92297785 MsG0180005484.01.T01:intron 35.0%
ATGCCAGTTCATCATTGTAA+AGG + Chr1:92299174-92299193 None:intergenic 35.0%
ATTCAAAGGAAAGAGTCAGA+AGG + Chr1:92298479-92298498 None:intergenic 35.0%
CCTCATTTCAAACACACAAA+GGG + Chr1:92299963-92299982 None:intergenic 35.0%
CTAAAAGAAATCGCATACAC+TGG + Chr1:92299427-92299446 None:intergenic 35.0%
CTTCATATGGCTTCGTTAAA+TGG - Chr1:92298195-92298214 MsG0180005484.01.T01:CDS 35.0%
TAAATAGAAGGGATCTGTGT+AGG + Chr1:92299547-92299566 None:intergenic 35.0%
TAATTTGAATGAGGGAAGGA+AGG + Chr1:92298749-92298768 None:intergenic 35.0%
TACGTGCTATGAAGTAAAGA+TGG + Chr1:92300016-92300035 None:intergenic 35.0%
TCCTCATTTCAAACACACAA+AGG + Chr1:92299964-92299983 None:intergenic 35.0%
TCTTGATATTGCTAGGATGT+GGG - Chr1:92298673-92298692 MsG0180005484.01.T01:intron 35.0%
TGAAAGGCAAACATGAACAA+AGG - Chr1:92297926-92297945 MsG0180005484.01.T01:intron 35.0%
TGAGAGCTGATTATCTTAGT+GGG - Chr1:92297767-92297786 MsG0180005484.01.T01:intron 35.0%
TTAGCAGATGCAAAATGAAG+AGG + Chr1:92297035-92297054 None:intergenic 35.0%
TTCAAGAAATTATTCTGGCC+AGG - Chr1:92297190-92297209 MsG0180005484.01.T01:intron 35.0%
TTGATGCAAGCTTGTAGATA+TGG - Chr1:92297601-92297620 MsG0180005484.01.T01:intron 35.0%
TTTCTACTTTAAATGAGGGG+TGG + Chr1:92298986-92299005 None:intergenic 35.0%
! CCCCTCATTTAAAGTAGAAA+AGG - Chr1:92298986-92299005 MsG0180005484.01.T01:intron 35.0%
! CTTCATTTTGCATCTGCTAA+GGG - Chr1:92297035-92297054 MsG0180005484.01.T01:intron 35.0%
! CTTGACAGGAATTTCGATTT+TGG + Chr1:92299583-92299602 None:intergenic 35.0%
! CTTGCTAAATACTCCACTTT+TGG - Chr1:92296996-92297015 MsG0180005484.01.T01:intron 35.0%
! GATTTTTGTCTTCTTCCCTT+AGG - Chr1:92298642-92298661 MsG0180005484.01.T01:intron 35.0%
! GTGGAGTATTTAGCAAGATA+AGG + Chr1:92296993-92297012 None:intergenic 35.0%
! TCTTCATTTTGCATCTGCTA+AGG - Chr1:92297034-92297053 MsG0180005484.01.T01:intron 35.0%
! TTTGAAATGAGGAATTTGGG+TGG - Chr1:92299971-92299990 MsG0180005484.01.T01:CDS 35.0%
! TTTGCTTTGTTGCTTGAGAA+TGG - Chr1:92297155-92297174 MsG0180005484.01.T01:intron 35.0%
!! ATGTTGATAACACTCATGAG+AGG + Chr1:92298782-92298801 None:intergenic 35.0%
!! TGGAACCTCAATGGATTAAT+AGG - Chr1:92298284-92298303 MsG0180005484.01.T01:CDS 35.0%
AGAAAACCTCTCCTCTTTCA+TGG - Chr1:92299518-92299537 MsG0180005484.01.T01:intron 40.0%
ATGTAATCTGATTTAGGGGC+TGG - Chr1:92298367-92298386 MsG0180005484.01.T01:intron 40.0%
CACATCCTAGCAATATCAAG+AGG + Chr1:92298674-92298693 None:intergenic 40.0%
CAGGTAATTTGAATGAGGGA+AGG + Chr1:92298753-92298772 None:intergenic 40.0%
CGAGCATGTATCACATCATA+AGG + Chr1:92297874-92297893 None:intergenic 40.0%
CGGATGACTTTGAATTGCAA+CGG - Chr1:92298552-92298571 MsG0180005484.01.T01:intron 40.0%
CGTCCTTTACAATGATGAAC+TGG - Chr1:92299168-92299187 MsG0180005484.01.T01:CDS 40.0%
CTCTTGATATTGCTAGGATG+TGG - Chr1:92298672-92298691 MsG0180005484.01.T01:intron 40.0%
CTTGATATTGCTAGGATGTG+GGG - Chr1:92298674-92298693 MsG0180005484.01.T01:intron 40.0%
CTTTGTGCGGAGAAACTTAA+GGG + Chr1:92299064-92299083 None:intergenic 40.0%
GGATGACTTTGAATTGCAAC+GGG - Chr1:92298553-92298572 MsG0180005484.01.T01:intron 40.0%
GGTGGTGTATCAAATGTGAA+AGG - Chr1:92297910-92297929 MsG0180005484.01.T01:intron 40.0%
GTTAATAAGACAGCTGATGG+TGG - Chr1:92298162-92298181 MsG0180005484.01.T01:intron 40.0%
TCTTTGTGCGGAGAAACTTA+AGG + Chr1:92299065-92299084 None:intergenic 40.0%
TGAGTGTTATCAACATAGCC+AGG - Chr1:92298786-92298805 MsG0180005484.01.T01:CDS 40.0%
TGGTATCACTGCACTTCATA+TGG - Chr1:92298182-92298201 MsG0180005484.01.T01:CDS 40.0%
TGTGTAGGTTTCCATGAAAG+AGG + Chr1:92299532-92299551 None:intergenic 40.0%
TGTTCAAATCTGAGCTGTCA+CGG - Chr1:92299373-92299392 MsG0180005484.01.T01:intron 40.0%
TTGATATTGCTAGGATGTGG+GGG - Chr1:92298675-92298694 MsG0180005484.01.T01:intron 40.0%
! CCCTTTGTGTGTTTGAAATG+AGG - Chr1:92299960-92299979 MsG0180005484.01.T01:CDS 40.0%
! CTTTGCATTATGCTGCTTGT+GGG - Chr1:92298398-92298417 MsG0180005484.01.T01:intron 40.0%
! TTTGCATTATGCTGCTTGTG+GGG - Chr1:92298399-92298418 MsG0180005484.01.T01:intron 40.0%
! TTTTGTCTTCTTCCCTTAGG+TGG - Chr1:92298645-92298664 MsG0180005484.01.T01:intron 40.0%
!! ATCACATCATAAGGAGCACT+CGG + Chr1:92297865-92297884 None:intergenic 40.0%
!! GCTAAATACTCCACTTTTGG+TGG - Chr1:92296999-92297018 MsG0180005484.01.T01:intron 40.0%
AAGTTGAAGGGGAAACAACC+TGG + Chr1:92298342-92298361 None:intergenic 45.0%
AGAGGGACATAAAGAGAGAG+TGG + Chr1:92297218-92297237 None:intergenic 45.0%
AGCCTGCACGTAAAACCTAA+TGG + Chr1:92300054-92300073 None:intergenic 45.0%
AGGTTTCCATGAAAGAGGAG+AGG + Chr1:92299527-92299546 None:intergenic 45.0%
AGTTGAAGGGGAAACAACCT+GGG + Chr1:92298341-92298360 None:intergenic 45.0%
ATCAAGAGGAAGCCACCTAA+GGG + Chr1:92298660-92298679 None:intergenic 45.0%
ATCTGCTAAGGGTCATAACG+AGG - Chr1:92297046-92297065 MsG0180005484.01.T01:intron 45.0%
CATAAAGAGAGAGTGGTACC+TGG + Chr1:92297211-92297230 None:intergenic 45.0%
CCACAAGCAGCATAATGCAA+AGG + Chr1:92298400-92298419 None:intergenic 45.0%
CTACTTTAAATGAGGGGTGG+TGG + Chr1:92298983-92299002 None:intergenic 45.0%
GAAGTAAAGATGGACACCAG+AGG + Chr1:92300006-92300025 None:intergenic 45.0%
GAGCTGATTATCTTAGTGGG+AGG - Chr1:92297770-92297789 MsG0180005484.01.T01:intron 45.0%
GATAACACTCATGAGAGGCA+AGG + Chr1:92298777-92298796 None:intergenic 45.0%
GGCTTCCTCTTGATATTGCT+AGG - Chr1:92298666-92298685 MsG0180005484.01.T01:intron 45.0%
GTCAGGCCTTAAAACGTTAC+AGG + Chr1:92298062-92298081 None:intergenic 45.0%
GTTGGGTAGACTCGTACAAA+AGG + Chr1:92298831-92298850 None:intergenic 45.0%
TATCAAGAGGAAGCCACCTA+AGG + Chr1:92298661-92298680 None:intergenic 45.0%
TATCTTAGGCTAGGCTTGAC+AGG + Chr1:92299597-92299616 None:intergenic 45.0%
TCTTTCGGATGTTCTGCTTC+TGG - Chr1:92296900-92296919 MsG0180005484.01.T01:intron 45.0%
TTTCAGATCCTCCTTGCAAG+AGG - Chr1:92298522-92298541 MsG0180005484.01.T01:intron 45.0%
! AAAGCATCTTCGCTTCCACA+AGG + Chr1:92296959-92296978 None:intergenic 45.0%
! CCTTTGCATTATGCTGCTTG+TGG - Chr1:92298397-92298416 MsG0180005484.01.T01:intron 45.0%
! CTGTCACGGACTGTTATAGT+TGG - Chr1:92299387-92299406 MsG0180005484.01.T01:intron 45.0%
! TGCCATTAGGTTTTACGTGC+AGG - Chr1:92300049-92300068 MsG0180005484.01.T01:CDS 45.0%
! TTGCATTATGCTGCTTGTGG+GGG - Chr1:92298400-92298419 MsG0180005484.01.T01:intron 45.0%
! TTTAAATGAGGGGTGGTGGT+GGG + Chr1:92298979-92298998 None:intergenic 45.0%
!! ATGAGGGAAGGAAGGTGTTA+CGG + Chr1:92298741-92298760 None:intergenic 45.0%
!! GTAGTGGATTGCAAAGTACC+TGG + Chr1:92298807-92298826 None:intergenic 45.0%
!! TCATTGGCTTGAACCTTTGC+TGG - Chr1:92298700-92298719 MsG0180005484.01.T01:intron 45.0%
ACCAAGCCTTTCCCACTAAG+TGG + Chr1:92299328-92299347 None:intergenic 50.0%
CAAGCCTTTCCCACTAAGTG+GGG + Chr1:92299326-92299345 None:intergenic 50.0%
CCAAGCCTTTCCCACTAAGT+GGG + Chr1:92299327-92299346 None:intergenic 50.0%
CGATCAGATGCTGAACAAGG+TGG - Chr1:92297892-92297911 MsG0180005484.01.T01:intron 50.0%
CTTCACTTTGCAGCGATGAG+CGG - Chr1:92297799-92297818 MsG0180005484.01.T01:intron 50.0%
GCTCGATCAGATGCTGAACA+AGG - Chr1:92297889-92297908 MsG0180005484.01.T01:intron 50.0%
GTGGGAGTCATACATGCCAA+TGG + Chr1:92298961-92298980 None:intergenic 50.0%
! AGGTGTTACGGCATCAGAAC+TGG + Chr1:92298729-92298748 None:intergenic 50.0%
! CTTTAAATGAGGGGTGGTGG+TGG + Chr1:92298980-92298999 None:intergenic 50.0%
! GACTCGTACAAAAGGCGTAG+TGG + Chr1:92298823-92298842 None:intergenic 50.0%
! GGTGTTACGGCATCAGAACT+GGG + Chr1:92298728-92298747 None:intergenic 50.0%
! TAGGTTTTACGTGCAGGCTG+TGG - Chr1:92300055-92300074 MsG0180005484.01.T01:CDS 50.0%
! TCCTTGCAAGAGGTGCAAGT+CGG - Chr1:92298532-92298551 MsG0180005484.01.T01:intron 50.0%
!! TGGGTGGTGTTATAGTCCTC+TGG - Chr1:92299987-92300006 MsG0180005484.01.T01:CDS 50.0%
ACTAAGTGGGGTCGGCTACA+TGG + Chr1:92299314-92299333 None:intergenic 55.0%
ATGTAGCCGACCCCACTTAG+TGG - Chr1:92299313-92299332 MsG0180005484.01.T01:intron 55.0%
CACTCATGAGAGGCAAGGAC+AGG + Chr1:92298772-92298791 None:intergenic 55.0%
CCAGTTTCAGTGGCTGCAGA+AGG - Chr1:92299767-92299786 MsG0180005484.01.T01:CDS 55.0%
CCCACTTAGTGGGAAAGGCT+TGG - Chr1:92299324-92299343 MsG0180005484.01.T01:intron 55.0%
CCTTCTGCAGCCACTGAAAC+TGG + Chr1:92299770-92299789 None:intergenic 55.0%
CCTTTCCCACTAAGTGGGGT+CGG + Chr1:92299322-92299341 None:intergenic 55.0%
GACTTGCACCTCTTGCAAGG+AGG + Chr1:92298533-92298552 None:intergenic 55.0%
TCAGAACTGGGTGCCAGCAA+AGG + Chr1:92298716-92298735 None:intergenic 55.0%
TGGCGAGAGACTGGTATCTG+CGG - Chr1:92296920-92296939 MsG0180005484.01.T01:intron 55.0%
TGTAGCCGACCCCACTTAGT+GGG - Chr1:92299314-92299333 MsG0180005484.01.T01:intron 55.0%
TTCTGCTTCTGGCGAGAGAC+TGG - Chr1:92296911-92296930 MsG0180005484.01.T01:intron 55.0%
! TCCGACTTGCACCTCTTGCA+AGG + Chr1:92298536-92298555 None:intergenic 55.0%
AGAGACTGGTATCTGCGGCG+AGG - Chr1:92296925-92296944 MsG0180005484.01.T01:intron 60.0%
CCGACCCCACTTAGTGGGAA+AGG - Chr1:92299319-92299338 MsG0180005484.01.T01:intron 60.0%
GAGACTGGTATCTGCGGCGA+GGG - Chr1:92296926-92296945 MsG0180005484.01.T01:intron 60.0%
GCCTCGAGAGCCAGTTTCAG+TGG - Chr1:92299757-92299776 MsG0180005484.01.T01:CDS 60.0%
! GCCACTGAAACTGGCTCTCG+AGG + Chr1:92299761-92299780 None:intergenic 60.0%
!! ACTTGGACAGGGCACTGCAC+TGG + Chr1:92298140-92298159 None:intergenic 60.0%
!! CTAGGATGTGGGGGCGTCAT+TGG - Chr1:92298684-92298703 MsG0180005484.01.T01:intron 60.0%
CTGGTATCTGCGGCGAGGGA+TGG - Chr1:92296930-92296949 MsG0180005484.01.T01:intron 65.0%
GGCGAGGGATGGTGACCTTG+TGG - Chr1:92296941-92296960 MsG0180005484.01.T01:intron 65.0%
Chromosome Type Strat End Strand Name
Chr1 gene 92296891 92300094 92296891 ID=MsG0180005484.01;Name=MsG0180005484.01
Chr1 mRNA 92296891 92300094 92296891 ID=MsG0180005484.01.T01;Parent=MsG0180005484.01;Name=MsG0180005484.01.T01;_AED=0.13;_eAED=0.13;_QI=0|0.66|0.71|1|0.66|0.71|7|0|317
Chr1 exon 92296891 92296914 92296891 ID=MsG0180005484.01.T01:exon:49676;Parent=MsG0180005484.01.T01
Chr1 exon 92297197 92297287 92297197 ID=MsG0180005484.01.T01:exon:49675;Parent=MsG0180005484.01.T01
Chr1 exon 92298178 92298321 92298178 ID=MsG0180005484.01.T01:exon:49674;Parent=MsG0180005484.01.T01
Chr1 exon 92298411 92298457 92298411 ID=MsG0180005484.01.T01:exon:49673;Parent=MsG0180005484.01.T01
Chr1 exon 92298716 92298839 92298716 ID=MsG0180005484.01.T01:exon:49672;Parent=MsG0180005484.01.T01
Chr1 exon 92299038 92299222 92299038 ID=MsG0180005484.01.T01:exon:49671;Parent=MsG0180005484.01.T01
Chr1 exon 92299756 92300094 92299756 ID=MsG0180005484.01.T01:exon:49670;Parent=MsG0180005484.01.T01
Chr1 CDS 92299756 92300094 92299756 ID=MsG0180005484.01.T01:cds;Parent=MsG0180005484.01.T01
Chr1 CDS 92299038 92299222 92299038 ID=MsG0180005484.01.T01:cds;Parent=MsG0180005484.01.T01
Chr1 CDS 92298716 92298839 92298716 ID=MsG0180005484.01.T01:cds;Parent=MsG0180005484.01.T01
Chr1 CDS 92298411 92298457 92298411 ID=MsG0180005484.01.T01:cds;Parent=MsG0180005484.01.T01
Chr1 CDS 92298178 92298321 92298178 ID=MsG0180005484.01.T01:cds;Parent=MsG0180005484.01.T01
Chr1 CDS 92297197 92297287 92297197 ID=MsG0180005484.01.T01:cds;Parent=MsG0180005484.01.T01
Chr1 CDS 92296891 92296914 92296891 ID=MsG0180005484.01.T01:cds;Parent=MsG0180005484.01.T01
Gene Sequence

>MsG0180005484.01.T01

ATGGGTAATTCTTTCGGATGTTCTGCTTCTGGCGAGAGACTGGTATCTGCGGCGAGGGATGGTGACCTTGTGGAAGCGAAGATGCTTTTGAATTGTAATCCTTATCTTGCTAAATACTCCACTTTTGGTGGTCTTAATTCTCCTCTTCATTTTGCATCTGCTAAGGGTCATAACGAGGTTTTCATTATTCAGATTAACCCTTTTGATTATTTTCTTCAAAGTTTGTTTATTTATTTGTTTTTCTTTCATGGGTTGGTTTTAGATTTTGCTTTGTTGCTTGAGAATGGAGCTGATGTTAATTCAAGAAATTATTCTGGCCAGGTACCACTCTCTCTTTATGTTATGAGAGCTGATTATCTTAGTGGGAGGACAGCTCTTCACTTTGCAGCGATGAGCGGACATGTAAGATGTATTAGACTTGTTGTGGCTGACTTTGTTCCGAGTGCTCCTTATGATGTGATACATGCTCGATCAGATGCTGAACAAGGTGGTGTATCAAATGTGAAAGGCAAACATGAACAAAGTGCCCTGTCCAAGTTTGTTAATAAGACAGCTGATGGTGGTATCACTGCACTTCATATGGCTTCGTTAAATGGATACTTTGATTGTGTGCAACTGCTACTTGATCTTAATGCAAATATGTCTTCTATCCTCCTTGCAAGAGGTGCAAGTCGGATGACTTTGAATTGCAACGGGTGGCTTCCTCTTGATATTGCTAGGATGTGGGGGCGTCATTGGCTTGAACCTTTGCTGGCACCCAGTTCTGATGCCGTAACACCTTCCTTCCCTCATTCAAATTACCTGTCCTTGCCTCTCATGAGTGTTATCAACATAGCCAGAGAATATGGATTGCGATCATCTACAACTTCCTCTGATGATATTGAATTTTGTGCTGTATGCCTCGAGAGCCAGTTTCAGTGGCTGCAGAAGGCTGTGGACATGAACTTTGTGTGA
Protein sequence

>MsG0180005484.01.T01

MGNSFGCSASGERLVSAARDGDLVEAKMLLNCNPYLAKYSTFGGLNSPLHFASAKGHNEVFIIQINPFDYFLQSLFIYLFFFHGLVLDFALLLENGADVNSRNYSGQVPLSLYVMRADYLSGRTALHFAAMSGHVRCIRLVVADFVPSAPYDVIHARSDAEQGGVSNVKGKHEQSALSKFVNKTADGGITALHMASLNGYFDCVQLLLDLNANMSSILLARGASRMTLNCNGWLPLDIARMWGRHWLEPLLAPSSDAVTPSFPHSNYLSLPLMSVINIAREYGLRSSTTSSDDIEFCAVCLESQFQWLQKAVDMNFV*