AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0480018125.01

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0480018125.01.T01 MTR_4g005930 99.169 602 5 0 1 602 1 602 0.0 1217
MsG0480018125.01.T01 MTR_6g045363 56.588 592 235 9 24 602 31 613 0.0 642
MsG0480018125.01.T01 MTR_1g111120 58.224 608 231 11 8 602 12 609 0.0 620
MsG0480018125.01.T01 MTR_4g083940 32.981 567 356 10 49 602 28 583 2.60e-88 290
MsG0480018125.01.T01 MTR_1g069620 26.102 567 380 12 49 603 61 600 1.14e-53 197
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0480018125.01.T01 AT5G49830 74.290 599 146 5 5 602 1 592 0.0 835
MsG0480018125.01.T01 AT5G49830 70.794 630 145 6 5 602 1 623 0.0 820
MsG0480018125.01.T01 AT5G49830 75.315 555 131 4 49 602 105 654 0.0 783
MsG0480018125.01.T01 AT1G10385 60.684 585 221 6 21 602 20 598 0.0 672
MsG0480018125.01.T01 AT1G10180 33.692 558 353 8 49 602 28 572 2.49e-87 288

Find 131 sgRNAs with CRISPR-Local

Find 382 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GAAGAAAGCTTTGAGGATTC+TGG 0.189121 4:+495087 MsG0480018125.01.T01:CDS
TCTACGGTTATCATCCTTAT+AGG 0.199977 4:-495235 None:intergenic
GACAGAAGCATTTGCTCTTC+TGG 0.211571 4:+494097 MsG0480018125.01.T01:CDS
CCTTATAGGGATCTTGGTTT+AGG 0.220695 4:-495221 None:intergenic
TCTTCTTCCTCCATTGATTC+TGG 0.235573 4:-495069 None:intergenic
AGTTGAGTTTCCTGATCTTT+TGG 0.240158 4:+493611 MsG0480018125.01.T01:CDS
ACCAAGCGGTGACGGTATTA+TGG 0.265040 4:-489301 None:intergenic
CTTATAGGGATCTTGGTTTA+GGG 0.280687 4:-495220 None:intergenic
CTCCTCCATTCCCGTTGTTC+AGG 0.299705 4:-495285 None:intergenic
TGCCCATCGCTTCAATTTGA+TGG 0.308622 4:+494418 MsG0480018125.01.T01:CDS
TCGCTTCAATTTGATGGTTC+AGG 0.316321 4:+494424 MsG0480018125.01.T01:CDS
CTATGGCTGCTGCTGATGAT+TGG 0.319105 4:+494321 MsG0480018125.01.T01:CDS
GCTAGCTAATGCCTCATTAC+TGG 0.329413 4:+495158 MsG0480018125.01.T01:CDS
CTACGGTTATCATCCTTATA+GGG 0.350038 4:-495234 None:intergenic
GCGGCGAGTGTTAAAGAAAA+TGG 0.352110 4:+489543 MsG0480018125.01.T01:CDS
TCTCCTTCGTGATCTTGTTA+TGG 0.358650 4:+489479 MsG0480018125.01.T01:exon
GTTTAGGGAGGAGAGCTTCA+TGG 0.358778 4:-495205 None:intergenic
TACTGCAGCTCTTGCACAAC+TGG 0.365271 4:+493977 MsG0480018125.01.T01:CDS
AGCTGACATGTATATAAGTA+TGG 0.372642 4:+495404 MsG0480018125.01.T01:CDS
AATACCGTCACCGCTTGGTT+AGG 0.378527 4:+489305 MsG0480018125.01.T01:five_prime_UTR
TAGCTAGCAGTGCAATCTGC+TGG 0.380139 4:-495143 None:intergenic
TATCATCCTTATAGGGATCT+TGG 0.392742 4:-495227 None:intergenic
CCTAAACCAAGATCCCTATA+AGG 0.394844 4:+495221 MsG0480018125.01.T01:CDS
CGGCCGTCAAACACCTCATA+TGG 0.413368 4:+493945 MsG0480018125.01.T01:CDS
TATGGCTGCTGCTGATGATT+GGG 0.419906 4:+494322 MsG0480018125.01.T01:CDS
TGTTCAATTTCTAGCTAGAT+TGG 0.419969 4:+489438 MsG0480018125.01.T01:five_prime_UTR
AGGTTGCTTGAGTGGATAGT+AGG 0.422298 4:-493464 None:intergenic
TGAAAGCTCACCTTCTAAAT+CGG 0.432039 4:-493430 None:intergenic
AGCAACCTTGATACATGGTT+TGG 0.434038 4:+493479 MsG0480018125.01.T01:CDS
GCTTATACAGGACTTCTTTG+AGG 0.435586 4:+494948 MsG0480018125.01.T01:intron
GCCTTTCTGCGGTTCTTCTA+CGG 0.436248 4:-495251 None:intergenic
CATATCCTCCTAATGCTAAT+CGG 0.438507 4:+494351 MsG0480018125.01.T01:CDS
AGTTCAGCACCACGGGTAGA+AGG 0.440179 4:-493816 None:intergenic
CATTTGCTCTTCTGGTGAAA+AGG 0.441118 4:+494105 MsG0480018125.01.T01:CDS
CCAGTCTGCCGATTAGCATT+AGG 0.441791 4:-494359 None:intergenic
AAATCGTCATCCTGAACAAC+GGG 0.443953 4:+495275 MsG0480018125.01.T01:CDS
TCACGCGCACTGTGTGTGTT+TGG 0.451429 4:-489370 None:intergenic
AAGGAGATATCCGATTTAGA+AGG 0.455997 4:+493420 MsG0480018125.01.T01:CDS
ATACCGTCACCGCTTGGTTA+GGG 0.457611 4:+489306 MsG0480018125.01.T01:five_prime_UTR
GACTCGTGGGTTCAGTTGAC+AGG 0.457851 4:+495310 MsG0480018125.01.T01:CDS
ACAAGCTGCAAGTGACTCAT+TGG 0.462838 4:+494016 MsG0480018125.01.T01:CDS
CACCTCTTCTCTCAATGATA+AGG 0.466166 4:+489635 MsG0480018125.01.T01:CDS
AAAAGCACTACCAGAATCAA+TGG 0.468783 4:+495059 MsG0480018125.01.T01:CDS
AAATATCAGACCTGGACAAA+TGG 0.478669 4:+493586 MsG0480018125.01.T01:CDS
AGCTAGCAGTGCAATCTGCT+GGG 0.487168 4:-495142 None:intergenic
GCTTTGGCCGCTCTTGATGA+AGG 0.487852 4:+493666 MsG0480018125.01.T01:CDS
CCTCCATATGAGGTGTTTGA+CGG 0.488508 4:-493948 None:intergenic
ACCTCTGCTTAGTATGCAGT+TGG 0.491714 4:+494978 MsG0480018125.01.T01:CDS
ACAAGAGAGTACTGCTGCTA+TGG 0.495618 4:+494304 MsG0480018125.01.T01:CDS
TTCTAAATCGGATATCTCCT+TGG 0.496112 4:-493418 None:intergenic
TGCAGAGACAGAAGTAAAGA+TGG 0.497612 4:-493732 None:intergenic
AAGAGAACATCCAAAAGATC+AGG 0.497714 4:-493621 None:intergenic
TTGGCTTCATCAGCAGCTGC+AGG 0.498943 4:+494134 MsG0480018125.01.T01:CDS
GGAGGAAGAAGAAAGCTTTG+AGG 0.502847 4:+495080 MsG0480018125.01.T01:CDS
AAGGCGAGTAGAAGAAGCTT+TGG 0.503692 4:+493650 MsG0480018125.01.T01:CDS
TTGATACATGGTTTGGCTGA+TGG 0.504145 4:+493486 MsG0480018125.01.T01:CDS
AGTATATGCTCCTCCATATG+AGG 0.506025 4:-493958 None:intergenic
TGGATGTTCTCTTGGCTGAA+AGG 0.507358 4:+493631 MsG0480018125.01.T01:CDS
GCAGTTGGGAGGACAAGCTC+TGG 0.512635 4:+494993 MsG0480018125.01.T01:CDS
GACACTTCTGCGCATCTCCT+CGG 0.517265 4:-491256 None:intergenic
GTCATCCTGAACAACGGGAA+TGG 0.517673 4:+495280 MsG0480018125.01.T01:CDS
TCCATAATACCGTCACCGCT+TGG 0.518500 4:+489300 MsG0480018125.01.T01:five_prime_UTR
GAAATGCGGATGAAGTTGAA+TGG 0.522687 4:+495430 MsG0480018125.01.T01:CDS
CGATGATGAAGTCATCTTCA+CGG 0.524587 4:+489508 MsG0480018125.01.T01:CDS
CCTAATGCTAATCGGCAGAC+TGG 0.524908 4:+494359 MsG0480018125.01.T01:CDS
GAACCATCAAATTGAAGCGA+TGG 0.527818 4:-494421 None:intergenic
GAGTGTGTTCAAATAGCATT+GGG 0.528713 4:+494176 MsG0480018125.01.T01:CDS
TCTGGTGAAAAGGCATGCAT+TGG 0.529675 4:+494115 MsG0480018125.01.T01:CDS
ATGTATCAAGGTTGCTTGAG+TGG 0.531435 4:-493472 None:intergenic
TTCTTCTGAACTTGTGATGT+GGG 0.533142 4:+494064 MsG0480018125.01.T01:CDS
CTAACTATGCAGCCTTCATA+CGG 0.533378 4:+491283 MsG0480018125.01.T01:CDS
AACACAAACTAACCGTATGA+AGG 0.541012 4:-491295 None:intergenic
CAGGACTTCTTTGAGGATGT+AGG 0.541656 4:+494955 MsG0480018125.01.T01:intron
ATTCTTCTGAACTTGTGATG+TGG 0.543682 4:+494063 MsG0480018125.01.T01:CDS
ATCAGCCAAACCATGTATCA+AGG 0.544536 4:-493484 None:intergenic
TGCACGAAGTTCAGCACCAC+GGG 0.549963 4:-493823 None:intergenic
AATGGAGTTAAGCTTGAAGA+AGG 0.551779 4:+489561 MsG0480018125.01.T01:CDS
AGTATAACATGCAAAGTCTC+CGG 0.553019 4:+493925 MsG0480018125.01.T01:CDS
ACTCAAGCAACCTTGATACA+TGG 0.553619 4:+493474 MsG0480018125.01.T01:CDS
TAAATGTCATAGAACTTCCA+AGG 0.554039 4:+493401 MsG0480018125.01.T01:intron
AGTGGATAGTAGGTTTCTGA+TGG 0.555242 4:-493454 None:intergenic
GATCCCTAACCAAGCGGTGA+CGG 0.558685 4:-489309 None:intergenic
GACATGTATATAAGTATGGA+AGG 0.560326 4:+495408 MsG0480018125.01.T01:CDS
ATCTTCACGGTCAAGAGCTA+CGG 0.560822 4:+489521 MsG0480018125.01.T01:CDS
TGGAAACAAAATTGTACGAA+TGG 0.565828 4:+495107 MsG0480018125.01.T01:CDS
CATATGAGGTGTTTGACGGC+CGG 0.569334 4:-493944 None:intergenic
AATCTGCTGGGCTTCAGTCT+CGG 0.569809 4:-495130 None:intergenic
AACCATCAAATTGAAGCGAT+GGG 0.570523 4:-494420 None:intergenic
GGAGTGTGTTCAAATAGCAT+TGG 0.572465 4:+494175 MsG0480018125.01.T01:CDS
CTTATCATTGAGAGAAGAGG+TGG 0.582451 4:-489634 None:intergenic
TTATCGATATCCGATTCTGA+TGG 0.583099 4:+493525 MsG0480018125.01.T01:CDS
GAGAGCTTCATGGCTGCGCG+TGG 0.585405 4:-495195 None:intergenic
TCTAATGCTTGTTCAACACT+AGG 0.587244 4:-494263 None:intergenic
TTGGGAGGACAAGCTCTGGA+AGG 0.588760 4:+494997 MsG0480018125.01.T01:CDS
CCTCTGCTTAGTATGCAGTT+GGG 0.589651 4:+494979 MsG0480018125.01.T01:CDS
ATAGGGATCTTGGTTTAGGG+AGG 0.592147 4:-495217 None:intergenic
TCAAATCTATCAGACTTGAA+AGG 0.596208 4:-489591 None:intergenic
TGGGAGGACAAGCTCTGGAA+GGG 0.602271 4:+494998 MsG0480018125.01.T01:CDS
GCTTGTCAGCCTTCTACCCG+TGG 0.603160 4:+493807 MsG0480018125.01.T01:CDS
GTCTGCCGATTAGCATTAGG+AGG 0.605675 4:-494356 None:intergenic
ACCGTAGAAGAACCGCAGAA+AGG 0.606454 4:+495250 MsG0480018125.01.T01:CDS
ATCCTGAACAACGGGAATGG+AGG 0.608982 4:+495283 MsG0480018125.01.T01:CDS
TATAAGTATGGAAGGAAATG+CGG 0.609812 4:+495416 MsG0480018125.01.T01:CDS
AAATCAGGCTCAAAGCATGT+TGG 0.615504 4:-495353 None:intergenic
AACCTTATCATTGAGAGAAG+AGG 0.615582 4:-489637 None:intergenic
GGAATGGAGGAGACGACTCG+TGG 0.616377 4:+495296 MsG0480018125.01.T01:CDS
TAGTTCATCAGCCAGTAATG+AGG 0.617154 4:-495169 None:intergenic
GCTTCATCAGCAGCTGCAGG+AGG 0.617864 4:+494137 MsG0480018125.01.T01:CDS
GCAGAGACAGAAGTAAAGAT+GGG 0.618767 4:-493731 None:intergenic
CTCTATGATCCCTAACCAAG+CGG 0.621663 4:-489315 None:intergenic
ACTCAACTAACCATTTGTCC+AGG 0.622338 4:-493596 None:intergenic
TGCTCATTATTAGAAGCTCG+TGG 0.624438 4:+494203 MsG0480018125.01.T01:CDS
CTTGAAAAGAGCTTCTGCCG+AGG 0.627062 4:+491239 MsG0480018125.01.T01:CDS
TAGATTGGCGCGTGTGTGCG+TGG 0.630527 4:+489453 MsG0480018125.01.T01:five_prime_UTR
CCTTCGTGATCTTGTTATGG+CGG 0.635548 4:+489482 MsG0480018125.01.T01:exon
ACATAAAGAAATATCAGACC+TGG 0.635904 4:+493578 MsG0480018125.01.T01:CDS
AGTAGCAAGCTGTGAGCATG+CGG 0.636005 4:-493879 None:intergenic
CCGTCAAACACCTCATATGG+AGG 0.647577 4:+493948 MsG0480018125.01.T01:CDS
CCCAACTGCATACTAAGCAG+AGG 0.650328 4:-494979 None:intergenic
AAAATCGTCATCCTGAACAA+CGG 0.651815 4:+495274 MsG0480018125.01.T01:CDS
AGGAGGTTTAAGAGCTGCTG+CGG 0.658917 4:+494154 MsG0480018125.01.T01:CDS
GAATGGAGGAGACGACTCGT+GGG 0.664709 4:+495297 MsG0480018125.01.T01:CDS
ACGTTCTCCTTCATCAAGAG+CGG 0.665530 4:-493673 None:intergenic
TTCACGGTCAAGAGCTACGG+CGG 0.666183 4:+489524 MsG0480018125.01.T01:CDS
AGCACTACCAGAATCAATGG+AGG 0.687736 4:+495062 MsG0480018125.01.T01:CDS
ATGCACGAAGTTCAGCACCA+CGG 0.688205 4:-493824 None:intergenic
GAATTGAATTGAAGAAGACA+CGG 0.691569 4:-489398 None:intergenic
ACAAGTTCAGAAGAATACGC+TGG 0.693012 4:-494056 None:intergenic
CTGCTTAGTATGCAGTTGGG+AGG 0.693555 4:+494982 MsG0480018125.01.T01:CDS
CCGCCATAACAAGATCACGA+AGG 0.749122 4:-489482 None:intergenic
AGAATTCTATTACCGAACGT+AGG 0.770772 4:+493754 MsG0480018125.01.T01:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAGCTTAATTATATATATTT+AGG + Chr4:489765-489784 MsG0480018125.01.T01:intron 10.0%
!! ATGTATTCTATATTATTTAT+AGG - Chr4:491576-491595 None:intergenic 10.0%
!! TGTATTCTATATTATTTATA+GGG - Chr4:491575-491594 None:intergenic 10.0%
!!! AAAAAAAATCATTTTTGAAA+TGG - Chr4:492007-492026 None:intergenic 10.0%
!!! AAATTTTCAAAAGAAAATAT+TGG - Chr4:492458-492477 None:intergenic 10.0%
!!! AATTCATTTTATTAAATTAG+GGG - Chr4:491639-491658 None:intergenic 10.0%
!!! CAATTCATTTTATTAAATTA+GGG - Chr4:491640-491659 None:intergenic 10.0%
!!! TATTTTTCTCAAATTATTAT+CGG + Chr4:490433-490452 MsG0480018125.01.T01:intron 10.0%
!!! TCAATTCATTTTATTAAATT+AGG - Chr4:491641-491660 None:intergenic 10.0%
!!! TCTTATTTATATATTATCAT+CGG - Chr4:491536-491555 None:intergenic 10.0%
!! AAGAAAAAGAAAAAAAAAAC+AGG - Chr4:494720-494739 None:intergenic 15.0%
!! AATATATATAATTAAGCTTC+TGG - Chr4:489764-489783 None:intergenic 15.0%
!! TAAGCTAAATAAAATTAAAC+TGG - Chr4:493339-493358 None:intergenic 15.0%
!! TTTATAAGTTCAAAATACTT+AGG + Chr4:490166-490185 MsG0480018125.01.T01:intron 15.0%
!!! GATATTTTAAAACATATACT+AGG + Chr4:491771-491790 MsG0480018125.01.T01:intron 15.0%
!!! TTTTGTTAATATATCTATCT+AGG - Chr4:491834-491853 None:intergenic 15.0%
!! AAGGATAAATAAAAAGAACA+AGG - Chr4:493250-493269 None:intergenic 20.0%
!! ATACAATAATTTAACACAGA+TGG + Chr4:491666-491685 MsG0480018125.01.T01:intron 20.0%
!! CATAAAATACTTGTATCATA+AGG + Chr4:491953-491972 MsG0480018125.01.T01:intron 20.0%
!! CTCTTAAATTCTTCAATTAT+TGG - Chr4:490555-490574 None:intergenic 20.0%
!! GAGAAAAATAACATAATTGA+AGG - Chr4:490423-490442 None:intergenic 20.0%
!! TACAATAATTTAACACAGAT+GGG + Chr4:491667-491686 MsG0480018125.01.T01:intron 20.0%
!! TATTTATTTGATGAAACATG+AGG - Chr4:493083-493102 None:intergenic 20.0%
!! TTAAATTGCAAGCAATTTAA+TGG - Chr4:492120-492139 None:intergenic 20.0%
!!! ATTTTCAATTTACTTTAAGC+TGG + Chr4:494914-494933 MsG0480018125.01.T01:intron 20.0%
!!! CTTTACTAGTTTATAGTTTA+AGG - Chr4:491344-491363 None:intergenic 20.0%
!!! GGTAACTGTTTTTTTTTTAA+TGG - Chr4:494577-494596 None:intergenic 20.0%
!!! TGAAAATTTTCAGAATTTTG+AGG + Chr4:492469-492488 MsG0480018125.01.T01:intron 20.0%
! AAAAAACCACAAACTACATA+AGG - Chr4:494894-494913 None:intergenic 25.0%
! AAAAACCACAAACTACATAA+GGG - Chr4:494893-494912 None:intergenic 25.0%
! AAAATTCACATTGCAAATCA+AGG - Chr4:494598-494617 None:intergenic 25.0%
! AAAATTGAAAAGCTGATGAA+TGG - Chr4:489708-489727 None:intergenic 25.0%
! AAAATTGTGACTAAAAGGAA+TGG - Chr4:491024-491043 None:intergenic 25.0%
! AAATTCTTCAATTATTGGAG+TGG - Chr4:490550-490569 None:intergenic 25.0%
! AAATTTCTGTATGGTAGATT+TGG + Chr4:492806-492825 MsG0480018125.01.T01:intron 25.0%
! AATGGTAAAACCTATTTGTT+GGG + Chr4:491070-491089 MsG0480018125.01.T01:intron 25.0%
! ACATTTGTAAAAAGTTCACA+AGG - Chr4:492034-492053 None:intergenic 25.0%
! ATAAAACATACCCAACAAAT+AGG - Chr4:491083-491102 None:intergenic 25.0%
! ATACTTGTATCATAAGGAAA+AGG + Chr4:491959-491978 MsG0480018125.01.T01:intron 25.0%
! ATCAGTATATGATTTGACAA+AGG + Chr4:493107-493126 MsG0480018125.01.T01:intron 25.0%
! ATGAAATGAAGTTATCAATG+AGG - Chr4:490481-490500 None:intergenic 25.0%
! CTATAAACTAGTAAAGAAAG+TGG + Chr4:491348-491367 MsG0480018125.01.T01:intron 25.0%
! GAAACAAAATTGTGACTAAA+AGG - Chr4:491029-491048 None:intergenic 25.0%
! GATGCTTCATAAATTCTAAA+AGG + Chr4:493037-493056 MsG0480018125.01.T01:intron 25.0%
! GCATCACAATTGATATATAA+AGG - Chr4:490638-490657 None:intergenic 25.0%
! TAAGTTCAAAATACTTAGGT+TGG + Chr4:490170-490189 MsG0480018125.01.T01:intron 25.0%
! TAATGGTAAAACCTATTTGT+TGG + Chr4:491069-491088 MsG0480018125.01.T01:intron 25.0%
! TATACCTGAAAAATCAAAGA+CGG - Chr4:495459-495478 None:intergenic 25.0%
! TATCAAAATAAGCTGAGAAT+AGG + Chr4:489931-489950 MsG0480018125.01.T01:intron 25.0%
! TATGACATAGAATGATGTTT+GGG + Chr4:494478-494497 MsG0480018125.01.T01:intron 25.0%
! TCAGTATATGATTTGACAAA+GGG + Chr4:493108-493127 MsG0480018125.01.T01:intron 25.0%
! TCCATCTATAAATCATCAAT+AGG + Chr4:492201-492220 MsG0480018125.01.T01:intron 25.0%
! TCTGCATTTAAATTTCTGTA+TGG + Chr4:492797-492816 MsG0480018125.01.T01:intron 25.0%
! TTAAATATGTAGATGATCAC+AGG + Chr4:491919-491938 MsG0480018125.01.T01:intron 25.0%
! TTATGACATAGAATGATGTT+TGG + Chr4:494477-494496 MsG0480018125.01.T01:intron 25.0%
!! ATAACTTTTGTGAGACTATT+TGG - Chr4:490262-490281 None:intergenic 25.0%
!! ATAATCTAAGACTTATGTTG+AGG + Chr4:490909-490928 MsG0480018125.01.T01:intron 25.0%
!! CAAAAATCAAAGCAAGTTTT+TGG + Chr4:492389-492408 MsG0480018125.01.T01:intron 25.0%
!! CTAAAAAGTTTCAAAAGTAC+AGG - Chr4:494242-494261 None:intergenic 25.0%
!! TAACTTTTGTGAGACTATTT+GGG - Chr4:490261-490280 None:intergenic 25.0%
!! TGACATATTGTCGTTTATTA+GGG - Chr4:492064-492083 None:intergenic 25.0%
!!! ATTCTCAGCTTATTTTGATA+AGG - Chr4:489931-489950 None:intergenic 25.0%
!!! CAGCTGCATTATTTTAATAT+TGG + Chr4:494836-494855 MsG0480018125.01.T01:intron 25.0%
!!! GATGTTTTTTATGCTTATAC+AGG + Chr4:494936-494955 MsG0480018125.01.T01:intron 25.0%
!!! GCTGTTTTTATAAGCTATAT+TGG + Chr4:490090-490109 MsG0480018125.01.T01:intron 25.0%
!!! TCATGCATAGTTTTAAATTC+CGG - Chr4:490715-490734 None:intergenic 25.0%
!!! TTAGGTCTGTTTTTATTTGA+AGG + Chr4:489783-489802 MsG0480018125.01.T01:intron 25.0%
AAAACTCTATGTGAAACTAG+TGG + Chr4:492732-492751 MsG0480018125.01.T01:intron 30.0%
AAACTCTATGTGAAACTAGT+GGG + Chr4:492733-492752 MsG0480018125.01.T01:intron 30.0%
AACAAGAAACAATGGATCAA+AGG - Chr4:489664-489683 None:intergenic 30.0%
AACCATGTAGATCATAATAG+AGG - Chr4:490861-490880 None:intergenic 30.0%
AATTGCAAGCAATTTAATGG+AGG - Chr4:492117-492136 None:intergenic 30.0%
ACAAAACACCAATTGTTTGA+TGG + Chr4:492884-492903 MsG0480018125.01.T01:intron 30.0%
ACAAGAAACAATGGATCAAA+GGG - Chr4:489663-489682 None:intergenic 30.0%
ACATAAAGAAATATCAGACC+TGG + Chr4:493578-493597 MsG0480018125.01.T01:CDS 30.0%
AGCTGACATGTATATAAGTA+TGG + Chr4:495404-495423 MsG0480018125.01.T01:CDS 30.0%
ATAGTTTCTTGTTGCTAACA+AGG + Chr4:490589-490608 MsG0480018125.01.T01:intron 30.0%
ATGAAAACAACTTATGACAC+TGG - Chr4:490231-490250 None:intergenic 30.0%
ATGAATAACATGATTGACAG+AGG - Chr4:490761-490780 None:intergenic 30.0%
ATTGTGTGTGAAAAAACAGA+TGG + Chr4:494644-494663 MsG0480018125.01.T01:intron 30.0%
ATTTAACGTCTAACACTAAC+TGG + Chr4:492134-492153 MsG0480018125.01.T01:intron 30.0%
CAGGAAAAATCATAGACTAA+AGG - Chr4:494701-494720 None:intergenic 30.0%
CATAATTGCTTAATTTCCTG+GGG - Chr4:491204-491223 None:intergenic 30.0%
GAAAAATCATAGACTAAAGG+TGG - Chr4:494698-494717 None:intergenic 30.0%
GAATTGAATTGAAGAAGACA+CGG - Chr4:489401-489420 None:intergenic 30.0%
GACATGTATATAAGTATGGA+AGG + Chr4:495408-495427 MsG0480018125.01.T01:CDS 30.0%
GACTACATAGTTATCACAAT+TGG - Chr4:490993-491012 None:intergenic 30.0%
GATTCAACACATAATTCCAT+TGG + Chr4:492759-492778 MsG0480018125.01.T01:intron 30.0%
GCATAATTGCTTAATTTCCT+GGG - Chr4:491205-491224 None:intergenic 30.0%
GTGCATGAAAAATTTGATGA+TGG - Chr4:492258-492277 None:intergenic 30.0%
TAAATGCAGAAAAGCTTGAA+GGG - Chr4:492787-492806 None:intergenic 30.0%
TAAATGTCATAGAACTTCCA+AGG + Chr4:493401-493420 MsG0480018125.01.T01:intron 30.0%
TACAGAAAAACCATCAGAAT+CGG - Chr4:493538-493557 None:intergenic 30.0%
TAGATCCTTAGACAACTAAA+TGG - Chr4:491051-491070 None:intergenic 30.0%
TATAAGTATGGAAGGAAATG+CGG + Chr4:495416-495435 MsG0480018125.01.T01:CDS 30.0%
TCAAATCTATCAGACTTGAA+AGG - Chr4:489594-489613 None:intergenic 30.0%
TGAAAACAACTTATGACACT+GGG - Chr4:490230-490249 None:intergenic 30.0%
TGAGAATAGGTTAGAAACAA+CGG + Chr4:489944-489963 MsG0480018125.01.T01:intron 30.0%
TGCATAATTGCTTAATTTCC+TGG - Chr4:491206-491225 None:intergenic 30.0%
TGGAAAATGAAAGCAAGTAA+TGG - Chr4:489688-489707 None:intergenic 30.0%
TGGAAACAAAATTGTACGAA+TGG + Chr4:495107-495126 MsG0480018125.01.T01:CDS 30.0%
TGTTGTTGTATCAACTATCT+AGG - Chr4:491749-491768 None:intergenic 30.0%
TGTTTCCATTTAGTTGTCTA+AGG + Chr4:491043-491062 MsG0480018125.01.T01:intron 30.0%
TTAAATGCAGAAAAGCTTGA+AGG - Chr4:492788-492807 None:intergenic 30.0%
TTAGTTGTCTAAGGATCTAA+TGG + Chr4:491052-491071 MsG0480018125.01.T01:intron 30.0%
TTATACATGTGACACATGTT+TGG - Chr4:490313-490332 None:intergenic 30.0%
TTATCTGCTATCTAGCATAA+AGG - Chr4:490893-490912 None:intergenic 30.0%
TTTCAGCCCTTAAAAAACTT+GGG + Chr4:493850-493869 MsG0480018125.01.T01:CDS 30.0%
! AAAATATTGGCCTATACGTT+TGG - Chr4:492445-492464 None:intergenic 30.0%
! AGATAGTTGATACAACAACA+CGG + Chr4:491749-491768 MsG0480018125.01.T01:intron 30.0%
! ATACCAACATTTTCTATCGA+AGG + Chr4:490332-490351 MsG0480018125.01.T01:intron 30.0%
! GACATATTGTCGTTTATTAG+GGG - Chr4:492063-492082 None:intergenic 30.0%
! GCCTATTGATGATTTATAGA+TGG - Chr4:492205-492224 None:intergenic 30.0%
! GTAATGGAAACAAGAAACAA+TGG - Chr4:489672-489691 None:intergenic 30.0%
! GTGACATATTGTCGTTTATT+AGG - Chr4:492065-492084 None:intergenic 30.0%
! TATCGATTGGTATTGTATAC+AGG - Chr4:492528-492547 None:intergenic 30.0%
! TCTGATGGTTTTTCTGTAAA+TGG + Chr4:493540-493559 MsG0480018125.01.T01:CDS 30.0%
! TCTTTGCTTAAGCATTTTGA+GGG + Chr4:492950-492969 MsG0480018125.01.T01:intron 30.0%
! TTTTTCTGTAAATGGTACAC+TGG + Chr4:493548-493567 MsG0480018125.01.T01:CDS 30.0%
!! ACTAGTTTCACATAGAGTTT+TGG - Chr4:492733-492752 None:intergenic 30.0%
!! TGAGTAGTTGTTCTAAAACT+AGG + Chr4:494537-494556 MsG0480018125.01.T01:intron 30.0%
!! TGTTCAATTTCTAGCTAGAT+TGG + Chr4:489438-489457 MsG0480018125.01.T01:five_prime_UTR 30.0%
!! TTGTTTCTAGTTCGTATACT+TGG + Chr4:490799-490818 MsG0480018125.01.T01:intron 30.0%
!!! ATGTTTTATTTACACCATGC+AGG + Chr4:491094-491113 MsG0480018125.01.T01:intron 30.0%
!!! TGTTTTATTTACACCATGCA+GGG + Chr4:491095-491114 MsG0480018125.01.T01:intron 30.0%
AAAAAGAAGACACCCAATTG+TGG - Chr4:492296-492315 None:intergenic 35.0%
AAAAGAAGACACCCAATTGT+GGG - Chr4:492295-492314 None:intergenic 35.0%
AAAATAAGCCGAGAAAAGCT+TGG + Chr4:490123-490142 MsG0480018125.01.T01:intron 35.0%
AAAATCGTCATCCTGAACAA+CGG + Chr4:495274-495293 MsG0480018125.01.T01:CDS 35.0%
AAATAAGCCGAGAAAAGCTT+GGG + Chr4:490124-490143 MsG0480018125.01.T01:intron 35.0%
AAATATCAGACCTGGACAAA+TGG + Chr4:493586-493605 MsG0480018125.01.T01:CDS 35.0%
AAATCCCAATCCAAACAAAC+AGG + Chr4:490204-490223 MsG0480018125.01.T01:intron 35.0%
AACACAAACTAACCGTATGA+AGG - Chr4:491298-491317 None:intergenic 35.0%
AACCATCAAATTGAAGCGAT+GGG - Chr4:494423-494442 None:intergenic 35.0%
AACCTTATCATTGAGAGAAG+AGG - Chr4:489640-489659 None:intergenic 35.0%
AACTCTATGTGAAACTAGTG+GGG + Chr4:492734-492753 MsG0480018125.01.T01:intron 35.0%
AAGAGAACATCCAAAAGATC+AGG - Chr4:493624-493643 None:intergenic 35.0%
AAGCAGTATTCCAAACGTAT+AGG + Chr4:492432-492451 MsG0480018125.01.T01:intron 35.0%
AAGGAGATATCCGATTTAGA+AGG + Chr4:493420-493439 MsG0480018125.01.T01:CDS 35.0%
AATGGAGTTAAGCTTGAAGA+AGG + Chr4:489561-489580 MsG0480018125.01.T01:CDS 35.0%
ACAAGTGCACATATTAGTGT+TGG + Chr4:492571-492590 MsG0480018125.01.T01:intron 35.0%
ACTCTTCCAATTCAAGAAGT+TGG + Chr4:492226-492245 MsG0480018125.01.T01:intron 35.0%
AGAATAGGTTAGAAACAACG+GGG + Chr4:489946-489965 MsG0480018125.01.T01:intron 35.0%
AGAATTCTATTACCGAACGT+AGG + Chr4:493754-493773 MsG0480018125.01.T01:CDS 35.0%
AGTATAACATGCAAAGTCTC+CGG + Chr4:493925-493944 MsG0480018125.01.T01:CDS 35.0%
ATACCAATCGATACCTGTAT+AGG + Chr4:492535-492554 MsG0480018125.01.T01:intron 35.0%
ATTCTTCTGAACTTGTGATG+TGG + Chr4:494063-494082 MsG0480018125.01.T01:CDS 35.0%
CATATCCTCCTAATGCTAAT+CGG + Chr4:494351-494370 MsG0480018125.01.T01:CDS 35.0%
CTACGGTTATCATCCTTATA+GGG - Chr4:495237-495256 None:intergenic 35.0%
CTAGTAAAGAAAGTGGTTCA+AGG + Chr4:491355-491374 MsG0480018125.01.T01:intron 35.0%
CTCAAAATGCTTAAGCAAAG+AGG - Chr4:492951-492970 None:intergenic 35.0%
CTTATAGGGATCTTGGTTTA+GGG - Chr4:495223-495242 None:intergenic 35.0%
GAGAATAGGTTAGAAACAAC+GGG + Chr4:489945-489964 MsG0480018125.01.T01:intron 35.0%
GAGGATGAGGCTAAAATATT+AGG - Chr4:493064-493083 None:intergenic 35.0%
GAGTGTGTTCAAATAGCATT+GGG + Chr4:494176-494195 MsG0480018125.01.T01:CDS 35.0%
GTTTCAGCCCTTAAAAAACT+TGG + Chr4:493849-493868 MsG0480018125.01.T01:CDS 35.0%
TAGTGACCAACTTCTTGAAT+TGG - Chr4:492235-492254 None:intergenic 35.0%
TATCATCCTTATAGGGATCT+TGG - Chr4:495230-495249 None:intergenic 35.0%
TCTAATGCTTGTTCAACACT+AGG - Chr4:494266-494285 None:intergenic 35.0%
TCTACGGTTATCATCCTTAT+AGG - Chr4:495238-495257 None:intergenic 35.0%
TGAAAGCTCACCTTCTAAAT+CGG - Chr4:493433-493452 None:intergenic 35.0%
TGCCTCTATTATGATCTACA+TGG + Chr4:490856-490875 MsG0480018125.01.T01:intron 35.0%
TTATCGATATCCGATTCTGA+TGG + Chr4:493525-493544 MsG0480018125.01.T01:CDS 35.0%
TTCAGCCCTTAAAAAACTTG+GGG + Chr4:493851-493870 MsG0480018125.01.T01:CDS 35.0%
TTCGTATACTTGGTTGAACA+GGG + Chr4:490809-490828 MsG0480018125.01.T01:intron 35.0%
TTCTAAATCGGATATCTCCT+TGG - Chr4:493421-493440 None:intergenic 35.0%
TTCTTCTGAACTTGTGATGT+GGG + Chr4:494064-494083 MsG0480018125.01.T01:CDS 35.0%
TTTGATCTTGTGAAGCAAAG+AGG + Chr4:491422-491441 MsG0480018125.01.T01:intron 35.0%
TTTGATGAAACATGAGGATG+AGG - Chr4:493077-493096 None:intergenic 35.0%
! AGATGGAAGTTACGCATTTT+TGG - Chr4:492188-492207 None:intergenic 35.0%
! AGCTAATTTTTGCCTACGTT+CGG - Chr4:493769-493788 None:intergenic 35.0%
! AGTTGAGTTTCCTGATCTTT+TGG + Chr4:493611-493630 MsG0480018125.01.T01:CDS 35.0%
! ATACGTTTGGAATACTGCTT+TGG - Chr4:492432-492451 None:intergenic 35.0%
! ATTTTCACTTTCGACGATGT+GGG + Chr4:492687-492706 MsG0480018125.01.T01:intron 35.0%
! CAATTTTCCCAAGCTTTTCT+CGG - Chr4:490134-490153 None:intergenic 35.0%
! CTCTTTGCTTAAGCATTTTG+AGG + Chr4:492949-492968 MsG0480018125.01.T01:intron 35.0%
! GAACATAGTGAAAGAGTACA+AGG + Chr4:490962-490981 MsG0480018125.01.T01:intron 35.0%
! GTTCTAAATTGTGGTTGCTA+TGG + Chr4:490611-490630 MsG0480018125.01.T01:intron 35.0%
! TGATCTTTTGGATGTTCTCT+TGG + Chr4:493623-493642 MsG0480018125.01.T01:CDS 35.0%
! TTTGAGCCTGATTTTTACAG+AGG + Chr4:495362-495381 MsG0480018125.01.T01:CDS 35.0%
! TTTTTGGATGGTGAGAATGA+GGG - Chr4:492172-492191 None:intergenic 35.0%
!! AAAAGCACTACCAGAATCAA+TGG + Chr4:495059-495078 MsG0480018125.01.T01:CDS 35.0%
!! AAGCAAAGAGGTTGTTTTCA+AGG + Chr4:491434-491453 MsG0480018125.01.T01:intron 35.0%
!! AATTGCATGCGAAGAGTATT+TGG - Chr4:493007-493026 None:intergenic 35.0%
!! AGAGTTTTGGCAATACAAAG+TGG - Chr4:492720-492739 None:intergenic 35.0%
!! AGTGACTCATTGGCTATTTT+TGG + Chr4:494026-494045 MsG0480018125.01.T01:CDS 35.0%
!! ATTTTTGGATGGTGAGAATG+AGG - Chr4:492173-492192 None:intergenic 35.0%
!! GATTCCGTCTTTGATTTTTC+AGG + Chr4:495452-495471 MsG0480018125.01.T01:CDS 35.0%
!! GCTAACAAGGTTCTAAATTG+TGG + Chr4:490602-490621 MsG0480018125.01.T01:intron 35.0%
!!! ACCATCCCCAAGTTTTTTAA+GGG - Chr4:493859-493878 None:intergenic 35.0%
!!! TCAGGTGAGACTTTTAGTTT+TGG + Chr4:494442-494461 MsG0480018125.01.T01:intron 35.0%
AAATCAGGCTCAAAGCATGT+TGG - Chr4:495356-495375 None:intergenic 40.0%
AAATCGTCATCCTGAACAAC+GGG + Chr4:495275-495294 MsG0480018125.01.T01:CDS 40.0%
AACTACTCACATTGTCCCAA+CGG - Chr4:494526-494545 None:intergenic 40.0%
ACAAGTTCAGAAGAATACGC+TGG - Chr4:494059-494078 None:intergenic 40.0%
ACTCAACTAACCATTTGTCC+AGG - Chr4:493599-493618 None:intergenic 40.0%
ACTCAAGCAACCTTGATACA+TGG + Chr4:493474-493493 MsG0480018125.01.T01:CDS 40.0%
AGCAACCTTGATACATGGTT+TGG + Chr4:493479-493498 MsG0480018125.01.T01:CDS 40.0%
AGTATATGCTCCTCCATATG+AGG - Chr4:493961-493980 None:intergenic 40.0%
AGTGGATAGTAGGTTTCTGA+TGG - Chr4:493457-493476 None:intergenic 40.0%
ATCAGCCAAACCATGTATCA+AGG - Chr4:493487-493506 None:intergenic 40.0%
ATGTATCAAGGTTGCTTGAG+TGG - Chr4:493475-493494 None:intergenic 40.0%
ATGTGGTGTAAATCTGGGTA+TGG + Chr4:493199-493218 MsG0480018125.01.T01:intron 40.0%
CAAACTACATAAGGGAAACG+TGG - Chr4:494885-494904 None:intergenic 40.0%
CAATTGCGACAACAAGATAC+AGG - Chr4:490682-490701 None:intergenic 40.0%
CACCATCCTCTGTAAAAATC+AGG - Chr4:495371-495390 None:intergenic 40.0%
CACCTCTTCTCTCAATGATA+AGG + Chr4:489635-489654 MsG0480018125.01.T01:CDS 40.0%
CATGTGACACATGTTTGGAT+TGG - Chr4:490308-490327 None:intergenic 40.0%
CATTTGCTCTTCTGGTGAAA+AGG + Chr4:494105-494124 MsG0480018125.01.T01:CDS 40.0%
CCACTTTGCCATCAAACAAT+TGG - Chr4:492895-492914 None:intergenic 40.0%
CCAGATTTACACCACATACA+GGG - Chr4:493196-493215 None:intergenic 40.0%
CCTAAACCAAGATCCCTATA+AGG + Chr4:495221-495240 MsG0480018125.01.T01:CDS 40.0%
CCTGTATGTGGTGTAAATCT+GGG + Chr4:493194-493213 MsG0480018125.01.T01:intron 40.0%
CCTTATAGGGATCTTGGTTT+AGG - Chr4:495224-495243 None:intergenic 40.0%
CGATGATGAAGTCATCTTCA+CGG + Chr4:489508-489527 MsG0480018125.01.T01:CDS 40.0%
CGTTTCCCTTATGTAGTTTG+TGG + Chr4:494885-494904 MsG0480018125.01.T01:intron 40.0%
CTAACTATGCAGCCTTCATA+CGG + Chr4:491283-491302 MsG0480018125.01.T01:CDS 40.0%
CTTATCATTGAGAGAAGAGG+TGG - Chr4:489637-489656 None:intergenic 40.0%
GAAATGCGGATGAAGTTGAA+TGG + Chr4:495430-495449 MsG0480018125.01.T01:CDS 40.0%
GAACCATCAAATTGAAGCGA+TGG - Chr4:494424-494443 None:intergenic 40.0%
GAGAATTATCTCCCTGTATG+TGG + Chr4:493182-493201 MsG0480018125.01.T01:intron 40.0%
GATTGACAGAGGATATTAGC+TGG - Chr4:490750-490769 None:intergenic 40.0%
GCAGAGACAGAAGTAAAGAT+GGG - Chr4:493734-493753 None:intergenic 40.0%
GCTTATACAGGACTTCTTTG+AGG + Chr4:494948-494967 MsG0480018125.01.T01:intron 40.0%
GGAGTGTGTTCAAATAGCAT+TGG + Chr4:494175-494194 MsG0480018125.01.T01:CDS 40.0%
GGATATTAGCTGGTATCATC+TGG - Chr4:490740-490759 None:intergenic 40.0%
GGTACAAACACATCTTTCTC+TGG + Chr4:491980-491999 MsG0480018125.01.T01:intron 40.0%
GTGCAATACTCTTCCTATAC+AGG - Chr4:492551-492570 None:intergenic 40.0%
GTTCGTATACTTGGTTGAAC+AGG + Chr4:490808-490827 MsG0480018125.01.T01:intron 40.0%
TAAATCTGGGTATGGCAGTT+GGG + Chr4:493207-493226 MsG0480018125.01.T01:intron 40.0%
TAGTTCATCAGCCAGTAATG+AGG - Chr4:495172-495191 None:intergenic 40.0%
TCATGACATGATGAAGAGCA+AGG + Chr4:492361-492380 MsG0480018125.01.T01:intron 40.0%
TCTCCTTCGTGATCTTGTTA+TGG + Chr4:489479-489498 MsG0480018125.01.T01:exon 40.0%
TGAAGGTAATCACGTGTGTT+GGG - Chr4:490406-490425 None:intergenic 40.0%
TGCAGAGACAGAAGTAAAGA+TGG - Chr4:493735-493754 None:intergenic 40.0%
TGCTCATTATTAGAAGCTCG+TGG + Chr4:494203-494222 MsG0480018125.01.T01:CDS 40.0%
TTCCTGGGGAAAAAGAGAAA+AGG - Chr4:491190-491209 None:intergenic 40.0%
TTGAAGGTAATCACGTGTGT+TGG - Chr4:490407-490426 None:intergenic 40.0%
! AGCCTGATTTTTACAGAGGA+TGG + Chr4:495366-495385 MsG0480018125.01.T01:CDS 40.0%
! AGGAAGTACAATCCAGAACT+GGG - Chr4:492931-492950 None:intergenic 40.0%
! AGGTGAAGCATCTAACATGT+TGG - Chr4:490461-490480 None:intergenic 40.0%
! ATGACGATTTTGCCTTTCTG+CGG - Chr4:495265-495284 None:intergenic 40.0%
! CCAACATTTTCTATCGAAGG+CGG + Chr4:490335-490354 MsG0480018125.01.T01:intron 40.0%
! CCAATTGTTTGATGGCAAAG+TGG + Chr4:492892-492911 MsG0480018125.01.T01:intron 40.0%
! GATTTTCACTTTCGACGATG+TGG + Chr4:492686-492705 MsG0480018125.01.T01:intron 40.0%
! TCGCTTCAATTTGATGGTTC+AGG + Chr4:494424-494443 MsG0480018125.01.T01:CDS 40.0%
! TTGATACATGGTTTGGCTGA+TGG + Chr4:493486-493505 MsG0480018125.01.T01:CDS 40.0%
! TTGGATTTGCTCAAAGCATG+CGG + Chr4:492825-492844 MsG0480018125.01.T01:intron 40.0%
! TTTTCACTTTCGACGATGTG+GGG + Chr4:492688-492707 MsG0480018125.01.T01:intron 40.0%
! TTTTGGATGGTGAGAATGAG+GGG - Chr4:492171-492190 None:intergenic 40.0%
!! CATGCGAAGAGTATTTGGAT+TGG - Chr4:493002-493021 None:intergenic 40.0%
!! CTTCCTATACAGGTATCGAT+TGG - Chr4:492541-492560 None:intergenic 40.0%
!! GAAGAAAGCTTTGAGGATTC+TGG + Chr4:495087-495106 MsG0480018125.01.T01:CDS 40.0%
!! GGAAGTTACGCATTTTTGGA+TGG - Chr4:492184-492203 None:intergenic 40.0%
!! TCTTCTTCCTCCATTGATTC+TGG - Chr4:495072-495091 None:intergenic 40.0%
!!! GACCATCCCCAAGTTTTTTA+AGG - Chr4:493860-493879 None:intergenic 40.0%
AAATCTGGGTATGGCAGTTG+GGG + Chr4:493208-493227 MsG0480018125.01.T01:intron 45.0%
AACAGTGATATAGCAGCCGT+TGG + Chr4:494507-494526 MsG0480018125.01.T01:intron 45.0%
AAGGCGAGTAGAAGAAGCTT+TGG + Chr4:493650-493669 MsG0480018125.01.T01:CDS 45.0%
ACAAGATACAGGCAGGTTTG+AGG - Chr4:490671-490690 None:intergenic 45.0%
ACAAGCTGCAAGTGACTCAT+TGG + Chr4:494016-494035 MsG0480018125.01.T01:CDS 45.0%
ACACCCAATTGTGGGACAAT+AGG - Chr4:492287-492306 None:intergenic 45.0%
ACAGATGGGTGAGATAGAAG+AGG + Chr4:491681-491700 MsG0480018125.01.T01:intron 45.0%
ACAGTGATATAGCAGCCGTT+GGG + Chr4:494508-494527 MsG0480018125.01.T01:intron 45.0%
ACCCAATTGTGGGACAATAG+GGG - Chr4:492285-492304 None:intergenic 45.0%
ACCTCTGCTTAGTATGCAGT+TGG + Chr4:494978-494997 MsG0480018125.01.T01:CDS 45.0%
ACGTTCTCCTTCATCAAGAG+CGG - Chr4:493676-493695 None:intergenic 45.0%
AGCACTACCAGAATCAATGG+AGG + Chr4:495062-495081 MsG0480018125.01.T01:CDS 45.0%
AGGTTGCTTGAGTGGATAGT+AGG - Chr4:493467-493486 None:intergenic 45.0%
ATAGGGATCTTGGTTTAGGG+AGG - Chr4:495220-495239 None:intergenic 45.0%
ATCTTCACGGTCAAGAGCTA+CGG + Chr4:489521-489540 MsG0480018125.01.T01:CDS 45.0%
CAAGAAATCTTCTCCCTGCA+TGG - Chr4:491111-491130 None:intergenic 45.0%
CAAGATACAGGCAGGTTTGA+GGG - Chr4:490670-490689 None:intergenic 45.0%
CACCCAATTGTGGGACAATA+GGG - Chr4:492286-492305 None:intergenic 45.0%
CACTACTACATATGTGCGCA+TGG - Chr4:492500-492519 None:intergenic 45.0%
CCCAGATTTACACCACATAC+AGG - Chr4:493197-493216 None:intergenic 45.0%
CCCTGTATGTGGTGTAAATC+TGG + Chr4:493193-493212 MsG0480018125.01.T01:intron 45.0%
CCGCCTTCGATAGAAAATGT+TGG - Chr4:490338-490357 None:intergenic 45.0%
CCTCTGCTTAGTATGCAGTT+GGG + Chr4:494979-494998 MsG0480018125.01.T01:CDS 45.0%
CTCTATGATCCCTAACCAAG+CGG - Chr4:489318-489337 None:intergenic 45.0%
GAAGGTAATCACGTGTGTTG+GGG - Chr4:490405-490424 None:intergenic 45.0%
GCCCTTAAAAAACTTGGGGA+TGG + Chr4:493855-493874 MsG0480018125.01.T01:CDS 45.0%
GCGGCGAGTGTTAAAGAAAA+TGG + Chr4:489543-489562 MsG0480018125.01.T01:CDS 45.0%
GCTAGCTAATGCCTCATTAC+TGG + Chr4:495158-495177 MsG0480018125.01.T01:CDS 45.0%
GGAGGAAGAAGAAAGCTTTG+AGG + Chr4:495080-495099 MsG0480018125.01.T01:CDS 45.0%
GTAAATCTGGGTATGGCAGT+TGG + Chr4:493206-493225 MsG0480018125.01.T01:intron 45.0%
TATCATCGGCATAGTGCACT+AGG - Chr4:491522-491541 None:intergenic 45.0%
TATGGCTGCTGCTGATGATT+GGG + Chr4:494322-494341 MsG0480018125.01.T01:CDS 45.0%
TCCCCTATTGTCCCACAATT+GGG + Chr4:492281-492300 MsG0480018125.01.T01:intron 45.0%
TCGCAATTGCAGTTGTTGAC+CGG + Chr4:490693-490712 MsG0480018125.01.T01:intron 45.0%
TCTATGTGAAACTAGTGGGG+TGG + Chr4:492737-492756 MsG0480018125.01.T01:intron 45.0%
TGCCCATCGCTTCAATTTGA+TGG + Chr4:494418-494437 MsG0480018125.01.T01:CDS 45.0%
TGGATGTTCTCTTGGCTGAA+AGG + Chr4:493631-493650 MsG0480018125.01.T01:CDS 45.0%
TGGGCCTGTTTGTTTGGATT+GGG - Chr4:490211-490230 None:intergenic 45.0%
TGTTGGGGTTATGTTGGTGT+GGG - Chr4:490390-490409 None:intergenic 45.0%
TTAGAAACAACGGGGCTGTT+TGG + Chr4:489954-489973 MsG0480018125.01.T01:intron 45.0%
! CAGGACTTCTTTGAGGATGT+AGG + Chr4:494955-494974 MsG0480018125.01.T01:intron 45.0%
! CCTCCATATGAGGTGTTTGA+CGG - Chr4:493951-493970 None:intergenic 45.0%
! CCTTCGTGATCTTGTTATGG+CGG + Chr4:489482-489501 MsG0480018125.01.T01:exon 45.0%
! CTCCTTTTCTCTTTTTCCCC+AGG + Chr4:491185-491204 MsG0480018125.01.T01:intron 45.0%
! GAGGAAGTACAATCCAGAAC+TGG - Chr4:492932-492951 None:intergenic 45.0%
! TCTGGTGAAAAGGCATGCAT+TGG + Chr4:494115-494134 MsG0480018125.01.T01:CDS 45.0%
!! AAAAGCTTGAAGGGCACCAA+TGG - Chr4:492778-492797 None:intergenic 45.0%
!! ACAAGAGAGTACTGCTGCTA+TGG + Chr4:494304-494323 MsG0480018125.01.T01:CDS 45.0%
!! ATTTTGAGGGTGCAGAAGAG+GGG + Chr4:492963-492982 MsG0480018125.01.T01:intron 45.0%
!! CAAAGCATCACCTTGCTGTT+CGG + Chr4:491480-491499 MsG0480018125.01.T01:intron 45.0%
!! CATTTTGAGGGTGCAGAAGA+GGG + Chr4:492962-492981 MsG0480018125.01.T01:intron 45.0%
!! GACAGAAGCATTTGCTCTTC+TGG + Chr4:494097-494116 MsG0480018125.01.T01:CDS 45.0%
!! TTCAGGTACTGGTTGTCTGA+CGG + Chr4:491713-491732 MsG0480018125.01.T01:intron 45.0%
!!! CTCATTGGCTATTTTTGGCG+AGG + Chr4:494031-494050 MsG0480018125.01.T01:CDS 45.0%
AATACCGTCACCGCTTGGTT+AGG + Chr4:489305-489324 MsG0480018125.01.T01:five_prime_UTR 50.0%
AATCTGCTGGGCTTCAGTCT+CGG - Chr4:495133-495152 None:intergenic 50.0%
AATCTGGGTATGGCAGTTGG+GGG + Chr4:493209-493228 MsG0480018125.01.T01:intron 50.0%
ACACTGATACGTGTCGGACA+CGG - Chr4:490367-490386 None:intergenic 50.0%
ACCGTAGAAGAACCGCAGAA+AGG + Chr4:495250-495269 MsG0480018125.01.T01:CDS 50.0%
AGCTAGCAGTGCAATCTGCT+GGG - Chr4:495145-495164 None:intergenic 50.0%
AGGAGGTTTAAGAGCTGCTG+CGG + Chr4:494154-494173 MsG0480018125.01.T01:CDS 50.0%
AGTAGCAAGCTGTGAGCATG+CGG - Chr4:493882-493901 None:intergenic 50.0%
ATACCGTCACCGCTTGGTTA+GGG + Chr4:489306-489325 MsG0480018125.01.T01:five_prime_UTR 50.0%
ATCCTGAACAACGGGAATGG+AGG + Chr4:495283-495302 MsG0480018125.01.T01:CDS 50.0%
ATGCACGAAGTTCAGCACCA+CGG - Chr4:493827-493846 None:intergenic 50.0%
CAATTGTGGGACAATAGGGG+AGG - Chr4:492282-492301 None:intergenic 50.0%
CACGTGTGTTGGGGTTATGT+TGG - Chr4:490396-490415 None:intergenic 50.0%
CCCAACTGCATACTAAGCAG+AGG - Chr4:494982-495001 None:intergenic 50.0%
CCGCCATAACAAGATCACGA+AGG - Chr4:489485-489504 None:intergenic 50.0%
CCGTCAAACACCTCATATGG+AGG + Chr4:493948-493967 MsG0480018125.01.T01:CDS 50.0%
CCTAATGCTAATCGGCAGAC+TGG + Chr4:494359-494378 MsG0480018125.01.T01:CDS 50.0%
CTATGGCTGCTGCTGATGAT+TGG + Chr4:494321-494340 MsG0480018125.01.T01:CDS 50.0%
CTCCCCTATTGTCCCACAAT+TGG + Chr4:492280-492299 MsG0480018125.01.T01:intron 50.0%
CTGCTTAGTATGCAGTTGGG+AGG + Chr4:494982-495001 MsG0480018125.01.T01:CDS 50.0%
CTGGGCCTGTTTGTTTGGAT+TGG - Chr4:490212-490231 None:intergenic 50.0%
CTTGAAAAGAGCTTCTGCCG+AGG + Chr4:491239-491258 MsG0480018125.01.T01:CDS 50.0%
GCCTTTCTGCGGTTCTTCTA+CGG - Chr4:495254-495273 None:intergenic 50.0%
GGTGAGATAGAAGAGGCAGT+GGG + Chr4:491688-491707 MsG0480018125.01.T01:intron 50.0%
GTCATCCTGAACAACGGGAA+TGG + Chr4:495280-495299 MsG0480018125.01.T01:CDS 50.0%
GTGAGATAGAAGAGGCAGTG+GGG + Chr4:491689-491708 MsG0480018125.01.T01:intron 50.0%
GTGTTGGGGTTATGTTGGTG+TGG - Chr4:490391-490410 None:intergenic 50.0%
GTTTAGGGAGGAGAGCTTCA+TGG - Chr4:495208-495227 None:intergenic 50.0%
TACAATCCAGAACTGGGCTG+TGG - Chr4:492925-492944 None:intergenic 50.0%
TACTGCAGCTCTTGCACAAC+TGG + Chr4:493977-493996 MsG0480018125.01.T01:CDS 50.0%
TAGCTAGCAGTGCAATCTGC+TGG - Chr4:495146-495165 None:intergenic 50.0%
TCCATAATACCGTCACCGCT+TGG + Chr4:489300-489319 MsG0480018125.01.T01:five_prime_UTR 50.0%
TGACACTGGGCCTGTTTGTT+TGG - Chr4:490217-490236 None:intergenic 50.0%
TGCGACAACAAGATACAGGC+AGG - Chr4:490678-490697 None:intergenic 50.0%
TGTGGGACACTGATACGTGT+CGG - Chr4:490373-490392 None:intergenic 50.0%
! ACCAAGCGGTGACGGTATTA+TGG - Chr4:489304-489323 None:intergenic 50.0%
! CATATGAGGTGTTTGACGGC+CGG - Chr4:493947-493966 None:intergenic 50.0%
! CCAGTCTGCCGATTAGCATT+AGG - Chr4:494362-494381 None:intergenic 50.0%
! GTCTGCCGATTAGCATTAGG+AGG - Chr4:494359-494378 None:intergenic 50.0%
!! GCATTTTGAGGGTGCAGAAG+AGG + Chr4:492961-492980 MsG0480018125.01.T01:intron 50.0%
!! TTTTGAGGGTGCAGAAGAGG+GGG + Chr4:492964-492983 MsG0480018125.01.T01:intron 50.0%
AGAAGAGGCAGTGGGGTTTC+AGG + Chr4:491696-491715 MsG0480018125.01.T01:intron 55.0%
AGTTCAGCACCACGGGTAGA+AGG - Chr4:493819-493838 None:intergenic 55.0%
ATCTGGGTATGGCAGTTGGG+GGG + Chr4:493210-493229 MsG0480018125.01.T01:intron 55.0%
CACTGATACGTGTCGGACAC+GGG - Chr4:490366-490385 None:intergenic 55.0%
CGGCCGTCAAACACCTCATA+TGG + Chr4:493945-493964 MsG0480018125.01.T01:CDS 55.0%
CTCCTCCATTCCCGTTGTTC+AGG - Chr4:495288-495307 None:intergenic 55.0%
GAATGGAGGAGACGACTCGT+GGG + Chr4:495297-495316 MsG0480018125.01.T01:CDS 55.0%
GACACTTCTGCGCATCTCCT+CGG - Chr4:491259-491278 None:intergenic 55.0%
GACTCGTGGGTTCAGTTGAC+AGG + Chr4:495310-495329 MsG0480018125.01.T01:CDS 55.0%
GATCCCTAACCAAGCGGTGA+CGG - Chr4:489312-489331 None:intergenic 55.0%
GCTGTTCGGCCAAGACTAGT+GGG + Chr4:491494-491513 MsG0480018125.01.T01:intron 55.0%
GCTTTGGCCGCTCTTGATGA+AGG + Chr4:493666-493685 MsG0480018125.01.T01:CDS 55.0%
GGGTGAGATAGAAGAGGCAG+TGG + Chr4:491687-491706 MsG0480018125.01.T01:intron 55.0%
TCACGCGCACTGTGTGTGTT+TGG - Chr4:489373-489392 None:intergenic 55.0%
TGCACGAAGTTCAGCACCAC+GGG - Chr4:493826-493845 None:intergenic 55.0%
TGCTGTTCGGCCAAGACTAG+TGG + Chr4:491493-491512 MsG0480018125.01.T01:intron 55.0%
TTCACGGTCAAGAGCTACGG+CGG + Chr4:489524-489543 MsG0480018125.01.T01:CDS 55.0%
TTGGCTTCATCAGCAGCTGC+AGG + Chr4:494134-494153 MsG0480018125.01.T01:CDS 55.0%
! CACTAGGCTCCCACTAGTCT+TGG - Chr4:491506-491525 None:intergenic 55.0%
!! CTAGTCTTGGCCGAACAGCA+AGG - Chr4:491493-491512 None:intergenic 55.0%
!! TGGGAGGACAAGCTCTGGAA+GGG + Chr4:494998-495017 MsG0480018125.01.T01:CDS 55.0%
!! TTGGGAGGACAAGCTCTGGA+AGG + Chr4:494997-495016 MsG0480018125.01.T01:CDS 55.0%
GCAGTTGGGAGGACAAGCTC+TGG + Chr4:494993-495012 MsG0480018125.01.T01:CDS 60.0%
GCTTCATCAGCAGCTGCAGG+AGG + Chr4:494137-494156 MsG0480018125.01.T01:CDS 60.0%
GCTTGTCAGCCTTCTACCCG+TGG + Chr4:493807-493826 MsG0480018125.01.T01:CDS 60.0%
GGAATGGAGGAGACGACTCG+TGG + Chr4:495296-495315 MsG0480018125.01.T01:CDS 60.0%
TAGATTGGCGCGTGTGTGCG+TGG + Chr4:489453-489472 MsG0480018125.01.T01:five_prime_UTR 60.0%
TCTGGGTATGGCAGTTGGGG+GGG + Chr4:493211-493230 MsG0480018125.01.T01:intron 60.0%
! GGCAGTGGGGTTTCAGGTAC+TGG + Chr4:491702-491721 MsG0480018125.01.T01:intron 60.0%
GAGAGCTTCATGGCTGCGCG+TGG - Chr4:495198-495217 None:intergenic 65.0%
GCTCTGCCACAGCCCAGTTC+TGG + Chr4:492916-492935 MsG0480018125.01.T01:intron 65.0%
Chromosome Type Strat End Strand Name
Chr4 gene 489283 495479 489283 ID=MsG0480018125.01;Name=MsG0480018125.01
Chr4 mRNA 489283 495479 489283 ID=MsG0480018125.01.T01;Parent=MsG0480018125.01;Name=MsG0480018125.01.T01;_AED=0.42;_eAED=0.42;_QI=215|1|0.75|1|1|1|4|0|603
Chr4 exon 489283 489656 489283 ID=MsG0480018125.01.T01:exon:614;Parent=MsG0480018125.01.T01
Chr4 exon 491207 491304 491207 ID=MsG0480018125.01.T01:exon:615;Parent=MsG0480018125.01.T01
Chr4 exon 493413 494445 493413 ID=MsG0480018125.01.T01:exon:616;Parent=MsG0480018125.01.T01
Chr4 exon 494958 495479 494958 ID=MsG0480018125.01.T01:exon:617;Parent=MsG0480018125.01.T01
Chr4 five_prime_UTR 489283 489497 489283 ID=MsG0480018125.01.T01:five_prime_utr;Parent=MsG0480018125.01.T01
Chr4 CDS 489498 489656 489498 ID=MsG0480018125.01.T01:cds;Parent=MsG0480018125.01.T01
Chr4 CDS 491207 491304 491207 ID=MsG0480018125.01.T01:cds;Parent=MsG0480018125.01.T01
Chr4 CDS 493413 494445 493413 ID=MsG0480018125.01.T01:cds;Parent=MsG0480018125.01.T01
Chr4 CDS 494958 495479 494958 ID=MsG0480018125.01.T01:cds;Parent=MsG0480018125.01.T01
Gene Sequence

>MsG0480018125.01.T01

ATGGCGGCGACGATGATGAAGTCATCTTCACGGTCAAGAGCTACGGCGGCGAGTGTTAAAGAAAATGGAGTTAAGCTTGAAGAAGGTCTTAATCCTTTCAAGTCTGATAGATTTGATGCTGAGTTCTATGTTCAGTCCACCTCTTCTCTCAATGATAAGGAAATTAAGCAATTATGCACATATTTAGTAGACTTGAAAAGAGCTTCTGCCGAGGAGATGCGCAGAAGTGTCTATGCTAACTATGCAGCCTTCATACGAACTTCCAAGGAGATATCCGATTTAGAAGGTGAGCTTTCATCCATCAGAAACCTACTATCCACTCAAGCAACCTTGATACATGGTTTGGCTGATGGAGTTCACATCGATTCATTATCGATATCCGATTCTGATGGTTTTTCTGTAAATGGTACACTGGATTCTGAACATAAAGAAATATCAGACCTGGACAAATGGTTAGTTGAGTTTCCTGATCTTTTGGATGTTCTCTTGGCTGAAAGGCGAGTAGAAGAAGCTTTGGCCGCTCTTGATGAAGGAGAACGTGTAGTCTCTGAAGCAAAAGAGATGAAATCTCTCAACCCATCTTTACTTCTGTCTCTGCAGAATTCTATTACCGAACGTAGGCAAAAATTAGCTGATCAGCTTGCTGAAGCTGCTTGTCAGCCTTCTACCCGTGGTGCTGAACTTCGTGCATCAGTTTCAGCCCTTAAAAAACTTGGGGATGGTCCGCATGCTCACAGCTTGCTACTCAATGCTCATCTGCAACGATATCAGTATAACATGCAAAGTCTCCGGCCGTCAAACACCTCATATGGAGGAGCATATACTGCAGCTCTTGCACAACTGGTATTTTCTGCAGTTGCACAAGCTGCAAGTGACTCATTGGCTATTTTTGGCGAGGAGCCAGCGTATTCTTCTGAACTTGTGATGTGGGCTACAAAGCAGACAGAAGCATTTGCTCTTCTGGTGAAAAGGCATGCATTGGCTTCATCAGCAGCTGCAGGAGGTTTAAGAGCTGCTGCGGAGTGTGTTCAAATAGCATTGGGTCATTGCTCATTATTAGAAGCTCGTGGTCTAGCTCTCTGTCCTGTACTTTTGAAACTTTTTAGACCTAGTGTTGAACAAGCATTAGATGCGAATTTGAAGCGAATACAAGAGAGTACTGCTGCTATGGCTGCTGCTGATGATTGGGTACTCACATATCCTCCTAATGCTAATCGGCAGACTGGTAGTACAACAGCATTTCAACTTAAACTAACAAGTAGTGCCCATCGCTTCAATTTGATGGTTCAGGACTTCTTTGAGGATGTAGGACCTCTGCTTAGTATGCAGTTGGGAGGACAAGCTCTGGAAGGGTTGTTTCAAGTATTTAACTCTTATGTAAACATGCTTATAAAAGCACTACCAGAATCAATGGAGGAAGAAGAAAGCTTTGAGGATTCTGGAAACAAAATTGTACGAATGGCCGAGACTGAAGCCCAGCAGATTGCACTGCTAGCTAATGCCTCATTACTGGCTGATGAACTACTTCCACGCGCAGCCATGAAGCTCTCCTCCCTAAACCAAGATCCCTATAAGGATGATAACCGTAGAAGAACCGCAGAAAGGCAAAATCGTCATCCTGAACAACGGGAATGGAGGAGACGACTCGTGGGTTCAGTTGACAGGTTGAAAGATTCATTCTGTCGCCAACATGCTTTGAGCCTGATTTTTACAGAGGATGGTGATAGTCATCTTACAGCTGACATGTATATAAGTATGGAAGGAAATGCGGATGAAGTTGAATGGATTCCGTCTTTGATTTTTCAGGTATAA
Protein sequence

>MsG0480018125.01.T01

MAATMMKSSSRSRATAASVKENGVKLEEGLNPFKSDRFDAEFYVQSTSSLNDKEIKQLCTYLVDLKRASAEEMRRSVYANYAAFIRTSKEISDLEGELSSIRNLLSTQATLIHGLADGVHIDSLSISDSDGFSVNGTLDSEHKEISDLDKWLVEFPDLLDVLLAERRVEEALAALDEGERVVSEAKEMKSLNPSLLLSLQNSITERRQKLADQLAEAACQPSTRGAELRASVSALKKLGDGPHAHSLLLNAHLQRYQYNMQSLRPSNTSYGGAYTAALAQLVFSAVAQAASDSLAIFGEEPAYSSELVMWATKQTEAFALLVKRHALASSAAAGGLRAAAECVQIALGHCSLLEARGLALCPVLLKLFRPSVEQALDANLKRIQESTAAMAAADDWVLTYPPNANRQTGSTTAFQLKLTSSAHRFNLMVQDFFEDVGPLLSMQLGGQALEGLFQVFNSYVNMLIKALPESMEEEESFEDSGNKIVRMAETEAQQIALLANASLLADELLPRAAMKLSSLNQDPYKDDNRRRTAERQNRHPEQREWRRRLVGSVDRLKDSFCRQHALSLIFTEDGDSHLTADMYISMEGNADEVEWIPSLIFQV*