AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0180005491.01

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0180005491.01.T01 MTR_1g101390 93.471 291 19 0 1 291 1 291 0.0 540
MsG0180005491.01.T01 MTR_0113s0040 73.145 283 76 0 9 291 3 285 1.56e-160 448
MsG0180005491.01.T01 MTR_0002s0020 59.298 285 105 3 1 280 1 279 6.15e-126 360
MsG0180005491.01.T01 MTR_4g102770 62.162 259 97 1 28 285 19 277 5.54e-122 350
MsG0180005491.01.T01 MTR_5g010800 56.716 268 112 3 19 285 10 274 3.55e-113 328
MsG0180005491.01.T01 MTR_7g103380 52.349 298 122 2 1 287 1 289 8.76e-112 325
MsG0180005491.01.T01 MTR_7g112550 26.408 284 181 6 23 281 2 282 3.36e-27 107
MsG0180005491.01.T01 MTR_1g079260 29.614 233 148 4 26 257 2 219 1.76e-26 105
MsG0180005491.01.T01 MTR_7g112560 23.552 259 192 5 31 285 4 260 2.01e-26 104
MsG0180005491.01.T01 MTR_1g079140 39.161 143 84 2 30 169 15 157 7.58e-25 101
MsG0180005491.01.T01 MTR_4g023570 24.903 257 171 6 31 285 4 240 9.49e-25 99.8
MsG0180005491.01.T01 MTR_1g100597 31.343 201 123 3 26 225 2 188 1.96e-23 97.1
MsG0180005491.01.T01 MTR_1g083580 35.664 143 90 2 31 171 11 153 1.43e-22 94.7
MsG0180005491.01.T01 MTR_1g079460 37.324 142 87 2 30 169 6 147 2.57e-22 94.0
MsG0180005491.01.T01 MTR_1g079180 36.301 146 91 2 26 169 2 147 6.05e-22 92.8
MsG0180005491.01.T01 MTR_3g452600 29.749 279 149 9 28 281 10 266 9.63e-21 89.7
MsG0180005491.01.T01 MTR_1g100613 32.418 182 108 3 45 225 6 173 1.08e-20 89.0
MsG0180005491.01.T01 MTR_1g079370 33.735 166 103 4 26 186 2 165 1.41e-20 89.4
MsG0180005491.01.T01 MTR_1g079230 28.692 237 148 5 26 255 2 224 1.62e-20 89.4
MsG0180005491.01.T01 MTR_1g079380 37.241 145 88 2 26 169 2 144 9.61e-20 87.4
MsG0180005491.01.T01 MTR_1g079200 34.247 146 92 3 30 174 6 148 4.71e-19 85.1
MsG0180005491.01.T01 MTR_1g079410 34.722 144 91 2 31 171 11 154 1.96e-17 80.5
MsG0180005491.01.T01 MTR_3g450990 28.070 285 162 10 28 281 10 282 6.73e-17 79.3
MsG0180005491.01.T01 MTR_1g079400 27.807 187 130 3 18 199 2 188 1.44e-15 75.5
MsG0180005491.01.T01 MTR_1g079850 32.653 147 92 3 30 171 6 150 2.17e-15 75.1
MsG0180005491.01.T01 MTR_2g079100 27.004 237 143 6 21 251 2 214 7.47e-15 73.2
MsG0180005491.01.T01 MTR_1g079250 33.562 146 91 3 30 171 6 149 1.14e-14 73.2
MsG0180005491.01.T01 MTR_1g079350 28.856 201 117 7 30 221 6 189 8.15e-14 70.5
MsG0180005491.01.T01 MTR_3g006850 30.380 158 94 4 26 169 15 170 9.06e-13 67.8
MsG0180005491.01.T01 MTR_1g079340 31.677 161 91 7 23 168 37 193 2.57e-11 63.5
MsG0180005491.01.T01 MTR_1g079350 35.338 133 72 6 30 153 6 133 5.07e-11 61.6
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0180005491.01.T01 AT3G61060 59.859 284 110 3 1 283 1 281 2.15e-128 367
MsG0180005491.01.T01 AT3G61060 59.649 285 110 4 1 283 1 282 1.27e-126 362
MsG0180005491.01.T01 AT5G52120 56.506 269 111 1 27 289 20 288 1.47e-116 337
MsG0180005491.01.T01 AT1G12710 56.667 270 111 3 25 291 25 291 1.79e-106 311
MsG0180005491.01.T01 AT1G63090 54.815 270 116 3 25 291 23 289 5.99e-102 300
MsG0180005491.01.T01 AT3G53000 50.000 292 127 3 1 281 1 284 3.05e-100 296
MsG0180005491.01.T01 AT1G12710 49.038 312 111 4 25 291 25 333 2.82e-97 290
MsG0180005491.01.T01 AT1G09155 28.571 203 129 3 31 231 3 191 3.37e-24 99.8
MsG0180005491.01.T01 AT2G02360 38.129 139 80 2 32 169 18 151 7.00e-23 95.5
MsG0180005491.01.T01 AT2G02240 28.881 277 151 7 31 283 64 318 7.37e-22 93.6
MsG0180005491.01.T01 AT2G02230 33.544 158 97 3 15 171 21 171 1.77e-20 90.1
MsG0180005491.01.T01 AT5G24560 28.049 164 106 3 28 184 3 161 1.85e-20 87.4
MsG0180005491.01.T01 AT1G80110 31.250 144 95 2 28 171 1 140 1.63e-18 83.6
MsG0180005491.01.T01 AT2G02350 31.410 156 100 3 13 166 9 159 1.76e-18 84.0
MsG0180005491.01.T01 AT2G02340 30.120 166 110 3 19 181 27 189 3.00e-18 83.6
MsG0180005491.01.T01 AT2G02310 35.878 131 78 2 30 159 47 172 7.26e-18 82.4
MsG0180005491.01.T01 AT2G02250 30.286 175 112 4 2 171 18 187 3.22e-17 80.5
MsG0180005491.01.T01 AT1G56250 24.315 292 165 7 31 281 4 280 1.85e-16 78.2
MsG0180005491.01.T01 AT1G56240 22.973 296 172 6 31 285 4 284 3.56e-16 77.4
MsG0180005491.01.T01 AT2G02300 26.241 282 165 10 22 285 28 284 7.26e-12 65.1
MsG0180005491.01.T01 AT2G02320 26.316 171 116 6 15 182 27 190 3.18e-11 63.2

Find 67 sgRNAs with CRISPR-Local

Find 181 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TAACATAGTATTTGTGTTTA+TGG 0.076128 1:+92428944 MsG0180005491.01.T01:three_prime_UTR
TTTCTTGTTAATAAATTTCT+TGG 0.236422 1:+92426010 MsG0180005491.01.T01:CDS
CTCAAACCCACCTAAAATAA+AGG 0.284259 1:-92428991 None:intergenic
TCCACCTGATATATGCAAAT+TGG 0.341137 1:+92425910 MsG0180005491.01.T01:CDS
ATTTGTCCAACTGAGTTTAG+AGG 0.350747 1:+92428852 MsG0180005491.01.T01:CDS
ATGTGGTGGGTTGAAGTAAT+AGG 0.354758 1:+92428501 MsG0180005491.01.T01:CDS
ATTTGCATGGGCCAGGGCAA+TGG 0.362661 1:+92428706 MsG0180005491.01.T01:CDS
TTACCATGTCGGAGATTTCA+TGG 0.372263 1:+92428734 MsG0180005491.01.T01:CDS
TCAAGGTCTTTGAAGATAAC+AGG 0.373611 1:+92426315 MsG0180005491.01.T01:CDS
CATAACCTTCAGACTCCAAT+TGG 0.381488 1:+92428560 MsG0180005491.01.T01:CDS
TGGATCAAGATGCATGAGTA+TGG 0.388988 1:-92425891 None:intergenic
CTAGCCAATTTGCATATATC+AGG 0.392374 1:-92425914 None:intergenic
TTTGCATGGGCCAGGGCAAT+GGG 0.397867 1:+92428707 MsG0180005491.01.T01:CDS
GAGTGTTATTTGCATGGGCC+AGG 0.404946 1:+92428699 MsG0180005491.01.T01:CDS
GTACCACCGTCAAAGCGATT+AGG 0.408204 1:-92426088 None:intergenic
GAATAGATGATAGAAGATAT+TGG 0.414837 1:+92426337 MsG0180005491.01.T01:CDS
ATCAATGCAGAGGCCACCTT+TGG 0.442592 1:-92428820 None:intergenic
TGCAACGTTGATCAAGTTCA+TGG 0.455459 1:+92428615 MsG0180005491.01.T01:CDS
ATGGAAGAGATGCAACTCTC+TGG 0.459681 1:-92425872 None:intergenic
ATCTCAGAGTGTTATTTGCA+TGG 0.460843 1:+92428693 MsG0180005491.01.T01:CDS
TCAAACCCACCTAAAATAAA+GGG 0.468506 1:-92428990 None:intergenic
CGTTGATCAAGTTCATGGTT+GGG 0.477900 1:+92428620 MsG0180005491.01.T01:CDS
TTTGTTTGTTCATGTCATCA+AGG 0.479024 1:+92426298 MsG0180005491.01.T01:CDS
AATTCTTCATCATCAAGAAC+GGG 0.479897 1:+92425836 MsG0180005491.01.T01:CDS
AGTCTTCCTCTAAACTCAGT+TGG 0.483555 1:-92428858 None:intergenic
GGGAAAGTCATCAAAACGAT+TGG 0.489012 1:+92428581 MsG0180005491.01.T01:CDS
CTGATATATGCAAATTGGCT+AGG 0.492079 1:+92425915 MsG0180005491.01.T01:CDS
TCTCACCTGGATTCCTCAGT+TGG 0.494511 1:-92426369 None:intergenic
ACATTCCAACTGAGGAATCC+AGG 0.495554 1:+92426364 MsG0180005491.01.T01:CDS
GTAGAGAGTTGGAATCTAAC+GGG 0.506240 1:-92428651 None:intergenic
TGGTAATAAGCCCATTGCCC+TGG 0.511634 1:-92428717 None:intergenic
AAAGTAAACTGCATACATAC+AGG 0.519497 1:-92429027 None:intergenic
GGAAAGTCATCAAAACGATT+GGG 0.522230 1:+92428582 MsG0180005491.01.T01:CDS
CTTTCCCAATTGGAGTCTGA+AGG 0.526720 1:-92428565 None:intergenic
TATTCACAGGTTCAAGAATG+TGG 0.529110 1:+92428464 MsG0180005491.01.T01:intron
TAATTCTTCATCATCAAGAA+CGG 0.543265 1:+92425835 MsG0180005491.01.T01:CDS
ACGTTGATCAAGTTCATGGT+TGG 0.551053 1:+92428619 MsG0180005491.01.T01:CDS
TGTCAACCTAATCGCTTTGA+CGG 0.551447 1:+92426082 MsG0180005491.01.T01:CDS
ATAACCTTCAGACTCCAATT+GGG 0.554699 1:+92428561 MsG0180005491.01.T01:CDS
TCTCAGAGTGTTATTTGCAT+GGG 0.559048 1:+92428694 MsG0180005491.01.T01:CDS
ACAAGAAACTTGTAGCATGA+TGG 0.560144 1:-92425995 None:intergenic
CTAGAGTTTGTGTTCCCTGT+GGG 0.560595 1:+92428528 MsG0180005491.01.T01:CDS
GCCAATTTGCATATATCAGG+TGG 0.562917 1:-92425911 None:intergenic
GACCGTCCGATGTAGAGAGT+TGG 0.563295 1:-92428662 None:intergenic
GCAGTTGTTATACTTATACA+AGG 0.563307 1:+92429064 MsG0180005491.01.T01:three_prime_UTR
TGTAGAGAGTTGGAATCTAA+CGG 0.566747 1:-92428652 None:intergenic
CATATCTTCAACAAATGTGG+TGG 0.568286 1:+92428487 MsG0180005491.01.T01:CDS
TGATATATGCAAATTGGCTA+GGG 0.577318 1:+92425916 MsG0180005491.01.T01:CDS
GCTGGCTAATATATTAGAGA+GGG 0.589856 1:+92428893 MsG0180005491.01.T01:exon
AGTGTTATTTGCATGGGCCA+GGG 0.596672 1:+92428700 MsG0180005491.01.T01:CDS
GTTATGCTGTAACTTCCCAC+AGG 0.602467 1:-92428543 None:intergenic
AGCTGGCTAATATATTAGAG+AGG 0.608744 1:+92428892 MsG0180005491.01.T01:exon
TTCCAACTCTCTACATCGGA+CGG 0.616192 1:+92428660 MsG0180005491.01.T01:CDS
CAACCTAATCGCTTTGACGG+TGG 0.616958 1:+92426085 MsG0180005491.01.T01:CDS
ATTGATTGTACTCATACCAA+AGG 0.618798 1:+92428804 MsG0180005491.01.T01:CDS
CAACCATGAAATCTCCGACA+TGG 0.619205 1:-92428737 None:intergenic
GATTGTACTCATACCAAAGG+TGG 0.620193 1:+92428807 MsG0180005491.01.T01:CDS
TTGGATTTACATTCCAACTG+AGG 0.622680 1:+92426356 MsG0180005491.01.T01:CDS
CAATGGGCTTATTACCATGT+CGG 0.628290 1:+92428723 MsG0180005491.01.T01:CDS
GACATCTTTCTTAGTCACAG+TGG 0.641231 1:-92426047 None:intergenic
AAGAAGCTCTATGAAAAGCA+CGG 0.646856 1:-92425943 None:intergenic
GCTAGAGTTTGTGTTCCCTG+TGG 0.654836 1:+92428527 MsG0180005491.01.T01:CDS
TAATTGCACTATCAATGCAG+AGG 0.665307 1:-92428830 None:intergenic
TGGCATATCTTCAACAAATG+TGG 0.668014 1:+92428484 MsG0180005491.01.T01:CDS
TAGATTCCAACTCTCTACAT+CGG 0.677625 1:+92428656 MsG0180005491.01.T01:CDS
ATATCTTCAACAAATGTGGT+GGG 0.687256 1:+92428488 MsG0180005491.01.T01:CDS
TTATGCTGTAACTTCCCACA+GGG 0.700073 1:-92428542 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TTAACAAATATCTATTAAAA+TGG + Chr1:92427811-92427830 MsG0180005491.01.T01:intron 10.0%
!!! TATAGAATAAAGTTTTAATT+AGG - Chr1:92427158-92427177 None:intergenic 10.0%
!! AGAAAGAAAAAAAAATCAAA+AGG - Chr1:92426200-92426219 None:intergenic 15.0%
!! ATATGAAAATGTGTTTATAA+CGG + Chr1:92426979-92426998 MsG0180005491.01.T01:intron 15.0%
!! TACAAATCAATTAAAATCAA+TGG + Chr1:92427369-92427388 MsG0180005491.01.T01:intron 15.0%
!! TTAAATTTCTACACTAAATT+TGG - Chr1:92427033-92427052 None:intergenic 15.0%
!! TTCTTAGTAACTTATAAATA+TGG + Chr1:92426437-92426456 MsG0180005491.01.T01:intron 15.0%
!! TTGGTCAAATAATAAATATT+AGG + Chr1:92427265-92427284 MsG0180005491.01.T01:intron 15.0%
!! TTTCTTGTTAATAAATTTCT+TGG + Chr1:92426010-92426029 MsG0180005491.01.T01:CDS 15.0%
!!! AAATGATATTTTAATCCTAT+GGG - Chr1:92427422-92427441 None:intergenic 15.0%
!!! ATACTTTTTAAGAATGAATT+AGG + Chr1:92426695-92426714 MsG0180005491.01.T01:intron 15.0%
!!! TAAATGATATTTTAATCCTA+TGG - Chr1:92427423-92427442 None:intergenic 15.0%
!!! TTTTTATTTTTTGTATTCAC+AGG + Chr1:92428451-92428470 MsG0180005491.01.T01:intron 15.0%
!! AAACAAAGATCAAATATAAG+AGG - Chr1:92426472-92426491 None:intergenic 20.0%
!! AACTAATTGAAAATGCAAAA+TGG + Chr1:92428408-92428427 MsG0180005491.01.T01:intron 20.0%
!! AAGAAAAGCAGTAATATTAA+CGG - Chr1:92428063-92428082 None:intergenic 20.0%
!! AGATGAAAGTTTAATATGTT+AGG + Chr1:92427234-92427253 MsG0180005491.01.T01:intron 20.0%
!! ATTAACCCTAAAAATTTAGA+AGG + Chr1:92427508-92427527 MsG0180005491.01.T01:intron 20.0%
!! TAACATAGTATTTGTGTTTA+TGG + Chr1:92428944-92428963 MsG0180005491.01.T01:three_prime_UTR 20.0%
!! TCTTATCAAAGATAAACATT+AGG + Chr1:92428296-92428315 MsG0180005491.01.T01:intron 20.0%
!!! ATCTTTTCAAAGTCTTATAT+AGG + Chr1:92427483-92427502 MsG0180005491.01.T01:intron 20.0%
!!! CAAAGAAAACTTGATTTTTA+TGG - Chr1:92428778-92428797 None:intergenic 20.0%
!!! CATAAAAATCAAGTTTTCTT+TGG + Chr1:92428776-92428795 MsG0180005491.01.T01:CDS 20.0%
!!! CCATTATTTTGAAAATATGT+AGG - Chr1:92427331-92427350 None:intergenic 20.0%
!!! CCTACATATTTTCAAAATAA+TGG + Chr1:92427328-92427347 MsG0180005491.01.T01:intron 20.0%
!!! GTTTCTTAATATTTTTCATG+TGG + Chr1:92427068-92427087 MsG0180005491.01.T01:intron 20.0%
!!! TTAAAAGCATATTTGCAAAT+TGG + Chr1:92427659-92427678 MsG0180005491.01.T01:intron 20.0%
!!! TTTAAGAAAAAGCAGTTTTT+GGG + Chr1:92427190-92427209 MsG0180005491.01.T01:intron 20.0%
!!! TTTGCATTTTCAATTAGTTT+TGG - Chr1:92428407-92428426 None:intergenic 20.0%
!!! TTTTAAGAAAAAGCAGTTTT+TGG + Chr1:92427189-92427208 MsG0180005491.01.T01:intron 20.0%
! AAAATTTAGTCACCCTATAT+TGG + Chr1:92426862-92426881 MsG0180005491.01.T01:intron 25.0%
! AAATTTAGTCACCCTATATT+GGG + Chr1:92426863-92426882 MsG0180005491.01.T01:intron 25.0%
! AAGACTCAAAAAATTATAGC+TGG + Chr1:92428875-92428894 MsG0180005491.01.T01:exon 25.0%
! AGAAGAAACTTCACATAATT+GGG - Chr1:92427924-92427943 None:intergenic 25.0%
! GAATAGATGATAGAAGATAT+TGG + Chr1:92426337-92426356 MsG0180005491.01.T01:CDS 25.0%
! TAAGATAGAGTAACTTACTT+TGG - Chr1:92426113-92426132 None:intergenic 25.0%
! TAATTCTTCATCATCAAGAA+CGG + Chr1:92425835-92425854 MsG0180005491.01.T01:CDS 25.0%
! TGAGAATCGCATATTATAAT+GGG - Chr1:92428039-92428058 None:intergenic 25.0%
! TTGAGAATCGCATATTATAA+TGG - Chr1:92428040-92428059 None:intergenic 25.0%
! TTGATGTGTGAATAATTTGA+TGG - Chr1:92426769-92426788 None:intergenic 25.0%
!! AAATCTAGGATGCTAAAATA+AGG - Chr1:92426137-92426156 None:intergenic 25.0%
!! ACAGTTCCTTCTAAATTTTT+AGG - Chr1:92427517-92427536 None:intergenic 25.0%
!! ATGAAAATGACCTTTGTTTA+AGG + Chr1:92427778-92427797 MsG0180005491.01.T01:intron 25.0%
!! ATTTTATGTAAACACAAAGC+AGG - Chr1:92426590-92426609 None:intergenic 25.0%
!! CAGTTCCTTCTAAATTTTTA+GGG - Chr1:92427516-92427535 None:intergenic 25.0%
!! TGAAAATGACCTTTGTTTAA+GGG + Chr1:92427779-92427798 MsG0180005491.01.T01:intron 25.0%
!! TGAATTATACGCATTTTACT+TGG + Chr1:92427998-92428017 MsG0180005491.01.T01:intron 25.0%
!! TTGATTTTTATGGACTCATT+GGG - Chr1:92428768-92428787 None:intergenic 25.0%
!! TTTGACTAACTTTTTAATGC+AGG - Chr1:92426637-92426656 None:intergenic 25.0%
!!! AATATGTTAGGCTCTTTTTT+TGG + Chr1:92427246-92427265 MsG0180005491.01.T01:intron 25.0%
!!! CAAATTGGCTTATGTTTTTA+TGG + Chr1:92427674-92427693 MsG0180005491.01.T01:intron 25.0%
!!! CATTTAGTTTCTTTTCATTG+AGG + Chr1:92427437-92427456 MsG0180005491.01.T01:intron 25.0%
!!! GTTAATATTACTGCTTTTCT+TGG + Chr1:92428062-92428081 MsG0180005491.01.T01:intron 25.0%
!!! TCTTGATTTGTTTTTCTTTC+TGG + Chr1:92426239-92426258 MsG0180005491.01.T01:intron 25.0%
!!! TTATACATGTTTAGTCTTGA+GGG + Chr1:92426919-92426938 MsG0180005491.01.T01:intron 25.0%
!!! TTTGTTTTTCTTTCTGGTAT+AGG + Chr1:92426245-92426264 MsG0180005491.01.T01:intron 25.0%
AAAGTAAACTGCATACATAC+AGG - Chr1:92429030-92429049 None:intergenic 30.0%
AATGGTTATAGAAGTGAAAG+TGG + Chr1:92427346-92427365 MsG0180005491.01.T01:intron 30.0%
AATTCTTCATCATCAAGAAC+GGG + Chr1:92425836-92425855 MsG0180005491.01.T01:CDS 30.0%
ATAGTTGTTGACCCAATATA+GGG - Chr1:92426877-92426896 None:intergenic 30.0%
ATATCTTCAACAAATGTGGT+GGG + Chr1:92428488-92428507 MsG0180005491.01.T01:CDS 30.0%
ATGTGTGAATAATTTGATGG+TGG - Chr1:92426766-92426785 None:intergenic 30.0%
ATTGATTGTACTCATACCAA+AGG + Chr1:92428804-92428823 MsG0180005491.01.T01:CDS 30.0%
CAAGACTAAACATGTATAAG+AGG - Chr1:92426918-92426937 None:intergenic 30.0%
CAGAAGAAACTTCACATAAT+TGG - Chr1:92427925-92427944 None:intergenic 30.0%
CATATTCCACGAATAGAATA+TGG - Chr1:92427856-92427875 None:intergenic 30.0%
CATTACTTTCCCTTAAACAA+AGG - Chr1:92427791-92427810 None:intergenic 30.0%
CTGTTTGTTTACAAACCAAT+TGG - Chr1:92428101-92428120 None:intergenic 30.0%
GCAGTTGTTATACTTATACA+AGG + Chr1:92429064-92429083 MsG0180005491.01.T01:three_prime_UTR 30.0%
GGAATATATCCAAATCCAAT+TGG + Chr1:92428083-92428102 MsG0180005491.01.T01:intron 30.0%
GTTTACAAACCAATTGGATT+TGG - Chr1:92428095-92428114 None:intergenic 30.0%
TCAAACCCACCTAAAATAAA+GGG - Chr1:92428993-92429012 None:intergenic 30.0%
TGAAGCTAAGTGAAAAATCT+AGG - Chr1:92426151-92426170 None:intergenic 30.0%
TGATATATGCAAATTGGCTA+GGG + Chr1:92425916-92425935 MsG0180005491.01.T01:CDS 30.0%
TTTGTTTGTTCATGTCATCA+AGG + Chr1:92426298-92426317 MsG0180005491.01.T01:CDS 30.0%
! AATCGCATATTATAATGGGA+AGG - Chr1:92428035-92428054 None:intergenic 30.0%
! ACATTTTCCTGAAATTACGA+TGG + Chr1:92427591-92427610 MsG0180005491.01.T01:intron 30.0%
! ATCGCATATTATAATGGGAA+GGG - Chr1:92428034-92428053 None:intergenic 30.0%
! CAAATAGTTTGTGTAAGAGA+AGG + Chr1:92426791-92426810 MsG0180005491.01.T01:intron 30.0%
! CTTGATTTTTATGGACTCAT+TGG - Chr1:92428769-92428788 None:intergenic 30.0%
! TTAGAAGGAACTGTTGTTTA+AGG + Chr1:92427523-92427542 MsG0180005491.01.T01:intron 30.0%
!! CTTATACATGTTTAGTCTTG+AGG + Chr1:92426918-92426937 MsG0180005491.01.T01:intron 30.0%
!! TAATTTTGACCCTGTATTGA+AGG + Chr1:92426492-92426511 MsG0180005491.01.T01:intron 30.0%
!! TCTGGTATAGGAAGTTTTAT+TGG + Chr1:92426257-92426276 MsG0180005491.01.T01:intron 30.0%
!!! AGGTTGAACTTTTAAGTTAG+TGG + Chr1:92428316-92428335 MsG0180005491.01.T01:intron 30.0%
!!! TCAAGTTAGCCCTTTATTTT+AGG + Chr1:92428981-92429000 MsG0180005491.01.T01:three_prime_UTR 30.0%
AAAGCTTCCATCGTAATTTC+AGG - Chr1:92427601-92427620 None:intergenic 35.0%
AAGAAGCTCTATGAAAAGCA+CGG - Chr1:92425946-92425965 None:intergenic 35.0%
ACAAGAAACTTGTAGCATGA+TGG - Chr1:92425998-92426017 None:intergenic 35.0%
AGAAACATAGCCTTCAATAC+AGG - Chr1:92426505-92426524 None:intergenic 35.0%
AGCTGGCTAATATATTAGAG+AGG + Chr1:92428892-92428911 MsG0180005491.01.T01:exon 35.0%
ATAACCTTCAGACTCCAATT+GGG + Chr1:92428561-92428580 MsG0180005491.01.T01:CDS 35.0%
ATTTGTCCAACTGAGTTTAG+AGG + Chr1:92428852-92428871 MsG0180005491.01.T01:CDS 35.0%
CATATCTTCAACAAATGTGG+TGG + Chr1:92428487-92428506 MsG0180005491.01.T01:CDS 35.0%
CTAGCCAATTTGCATATATC+AGG - Chr1:92425917-92425936 None:intergenic 35.0%
CTCAAACCCACCTAAAATAA+AGG - Chr1:92428994-92429013 None:intergenic 35.0%
CTGATATATGCAAATTGGCT+AGG + Chr1:92425915-92425934 MsG0180005491.01.T01:CDS 35.0%
GAAACATAGCCTTCAATACA+GGG - Chr1:92426504-92426523 None:intergenic 35.0%
GAATAATCTGAACAACCCAT+AGG + Chr1:92427404-92427423 MsG0180005491.01.T01:intron 35.0%
GATAGTTGTTGACCCAATAT+AGG - Chr1:92426878-92426897 None:intergenic 35.0%
GCTGGCTAATATATTAGAGA+GGG + Chr1:92428893-92428912 MsG0180005491.01.T01:exon 35.0%
GGAAAGTCATCAAAACGATT+GGG + Chr1:92428582-92428601 MsG0180005491.01.T01:CDS 35.0%
GGGTTGTTCAGATTATTCTT+TGG - Chr1:92427402-92427421 None:intergenic 35.0%
TAATTGCACTATCAATGCAG+AGG - Chr1:92428833-92428852 None:intergenic 35.0%
TAGATTCCAACTCTCTACAT+CGG + Chr1:92428656-92428675 MsG0180005491.01.T01:CDS 35.0%
TATGGCAGTTTCTTCATGAA+GGG + Chr1:92427627-92427646 MsG0180005491.01.T01:intron 35.0%
TATTCACAGGTTCAAGAATG+TGG + Chr1:92428464-92428483 MsG0180005491.01.T01:intron 35.0%
TCCACCTGATATATGCAAAT+TGG + Chr1:92425910-92425929 MsG0180005491.01.T01:CDS 35.0%
TCTCACATTGAAATGAGACA+AGG + Chr1:92426834-92426853 MsG0180005491.01.T01:intron 35.0%
TGGCATATCTTCAACAAATG+TGG + Chr1:92428484-92428503 MsG0180005491.01.T01:CDS 35.0%
TGTAGAGAGTTGGAATCTAA+CGG - Chr1:92428655-92428674 None:intergenic 35.0%
TGTATTGAAGGCTATGTTTC+TGG + Chr1:92426504-92426523 MsG0180005491.01.T01:intron 35.0%
TGTGTTTATAACGGTGTATG+CGG + Chr1:92426988-92427007 MsG0180005491.01.T01:intron 35.0%
TTAGTGGTAAGAAGTTTCTG+TGG + Chr1:92428332-92428351 MsG0180005491.01.T01:intron 35.0%
TTCATGAAGAAACTGCCATA+GGG - Chr1:92427627-92427646 None:intergenic 35.0%
TTGGATTTACATTCCAACTG+AGG + Chr1:92426356-92426375 MsG0180005491.01.T01:CDS 35.0%
! TAGTTTGTGTAAGAGAAGGT+TGG + Chr1:92426795-92426814 MsG0180005491.01.T01:intron 35.0%
! TCAAGGTCTTTGAAGATAAC+AGG + Chr1:92426315-92426334 MsG0180005491.01.T01:CDS 35.0%
! TCGCATATTATAATGGGAAG+GGG - Chr1:92428033-92428052 None:intergenic 35.0%
!! ATCTCAGAGTGTTATTTGCA+TGG + Chr1:92428693-92428712 MsG0180005491.01.T01:CDS 35.0%
!! GACACACATTGAAAGTGTTT+AGG - Chr1:92426556-92426575 None:intergenic 35.0%
!! GTTTTATTGGACAAATGCAG+TGG + Chr1:92426270-92426289 MsG0180005491.01.T01:CDS 35.0%
!! GTTTTGATGACTTTCCCAAT+TGG - Chr1:92428578-92428597 None:intergenic 35.0%
!! TCTCAGAGTGTTATTTGCAT+GGG + Chr1:92428694-92428713 MsG0180005491.01.T01:CDS 35.0%
!! TTTGATGGTGGCTAAATTGA+TGG - Chr1:92426754-92426773 None:intergenic 35.0%
!!! AGTTAGCCCTTTATTTTAGG+TGG + Chr1:92428984-92429003 MsG0180005491.01.T01:three_prime_UTR 35.0%
!!! GTTAGCCCTTTATTTTAGGT+GGG + Chr1:92428985-92429004 MsG0180005491.01.T01:three_prime_UTR 35.0%
!!! TTCTTCTGCTGATTTTGTGT+GGG + Chr1:92425961-92425980 MsG0180005491.01.T01:CDS 35.0%
ACGTTGATCAAGTTCATGGT+TGG + Chr1:92428619-92428638 MsG0180005491.01.T01:CDS 40.0%
AGTCTTCCTCTAAACTCAGT+TGG - Chr1:92428861-92428880 None:intergenic 40.0%
ATGGCAGTTTCTTCATGAAG+GGG + Chr1:92427628-92427647 MsG0180005491.01.T01:intron 40.0%
CATAACCTTCAGACTCCAAT+TGG + Chr1:92428560-92428579 MsG0180005491.01.T01:CDS 40.0%
CGTTGATCAAGTTCATGGTT+GGG + Chr1:92428620-92428639 MsG0180005491.01.T01:CDS 40.0%
CTATGGCAGTTTCTTCATGA+AGG + Chr1:92427626-92427645 MsG0180005491.01.T01:intron 40.0%
CTTCATGAAGAAACTGCCAT+AGG - Chr1:92427628-92427647 None:intergenic 40.0%
GACATCTTTCTTAGTCACAG+TGG - Chr1:92426050-92426069 None:intergenic 40.0%
GATTGTACTCATACCAAAGG+TGG + Chr1:92428807-92428826 MsG0180005491.01.T01:CDS 40.0%
GCAATGCCATATTCTATTCG+TGG + Chr1:92427847-92427866 MsG0180005491.01.T01:intron 40.0%
GCCAATTTGCATATATCAGG+TGG - Chr1:92425914-92425933 None:intergenic 40.0%
GGGAAAGTCATCAAAACGAT+TGG + Chr1:92428581-92428600 MsG0180005491.01.T01:CDS 40.0%
GTAGAGAGTTGGAATCTAAC+GGG - Chr1:92428654-92428673 None:intergenic 40.0%
TCATGAAGAAACTGCCATAG+GGG - Chr1:92427626-92427645 None:intergenic 40.0%
TGCAACGTTGATCAAGTTCA+TGG + Chr1:92428615-92428634 MsG0180005491.01.T01:CDS 40.0%
TGGATCAAGATGCATGAGTA+TGG - Chr1:92425894-92425913 None:intergenic 40.0%
TGTCAACCTAATCGCTTTGA+CGG + Chr1:92426082-92426101 MsG0180005491.01.T01:CDS 40.0%
TGTTTAGGAGTCAAGACACA+TGG - Chr1:92426541-92426560 None:intergenic 40.0%
TTACCATGTCGGAGATTTCA+TGG + Chr1:92428734-92428753 MsG0180005491.01.T01:CDS 40.0%
TTATGCTGTAACTTCCCACA+GGG - Chr1:92428545-92428564 None:intergenic 40.0%
! CAATGGGCTTATTACCATGT+CGG + Chr1:92428723-92428742 MsG0180005491.01.T01:CDS 40.0%
! CGCATATTATAATGGGAAGG+GGG - Chr1:92428032-92428051 None:intergenic 40.0%
! TATTTTTCATGTGGCAGCTG+AGG + Chr1:92427077-92427096 MsG0180005491.01.T01:intron 40.0%
! TGGGCAAATAGAAGCTTTTG+TGG - Chr1:92427905-92427924 None:intergenic 40.0%
!! ATGTGGTGGGTTGAAGTAAT+AGG + Chr1:92428501-92428520 MsG0180005491.01.T01:CDS 40.0%
!!! CTTCTTCTGCTGATTTTGTG+TGG + Chr1:92425960-92425979 MsG0180005491.01.T01:CDS 40.0%
ACATTCCAACTGAGGAATCC+AGG + Chr1:92426364-92426383 MsG0180005491.01.T01:CDS 45.0%
ATGGAAGAGATGCAACTCTC+TGG - Chr1:92425875-92425894 None:intergenic 45.0%
ATGTGGCAGCTGAGGTAAAA+GGG + Chr1:92427085-92427104 MsG0180005491.01.T01:intron 45.0%
CAACCATGAAATCTCCGACA+TGG - Chr1:92428740-92428759 None:intergenic 45.0%
CTAGAGTTTGTGTTCCCTGT+GGG + Chr1:92428528-92428547 MsG0180005491.01.T01:CDS 45.0%
CTTTCCCAATTGGAGTCTGA+AGG - Chr1:92428568-92428587 None:intergenic 45.0%
GTGTATGCGGAGGACAATAA+GGG + Chr1:92427001-92427020 MsG0180005491.01.T01:intron 45.0%
GTTATGCTGTAACTTCCCAC+AGG - Chr1:92428546-92428565 None:intergenic 45.0%
GTTTATAACGGTGTATGCGG+AGG + Chr1:92426991-92427010 MsG0180005491.01.T01:intron 45.0%
TCTATAGTGCATCTCTCACC+TGG - Chr1:92426385-92426404 None:intergenic 45.0%
TTCCAACTCTCTACATCGGA+CGG + Chr1:92428660-92428679 MsG0180005491.01.T01:CDS 45.0%
!! AGTGTTATTTGCATGGGCCA+GGG + Chr1:92428700-92428719 MsG0180005491.01.T01:CDS 45.0%
ATCAATGCAGAGGCCACCTT+TGG - Chr1:92428823-92428842 None:intergenic 50.0%
CAACCTAATCGCTTTGACGG+TGG + Chr1:92426085-92426104 MsG0180005491.01.T01:CDS 50.0%
CATGTGGCAGCTGAGGTAAA+AGG + Chr1:92427084-92427103 MsG0180005491.01.T01:intron 50.0%
GATGGAAGCTTTCACCCCTA+TGG + Chr1:92427609-92427628 MsG0180005491.01.T01:intron 50.0%
GCTAGAGTTTGTGTTCCCTG+TGG + Chr1:92428527-92428546 MsG0180005491.01.T01:CDS 50.0%
GGTGTATGCGGAGGACAATA+AGG + Chr1:92427000-92427019 MsG0180005491.01.T01:intron 50.0%
GTACCACCGTCAAAGCGATT+AGG - Chr1:92426091-92426110 None:intergenic 50.0%
TCTCACCTGGATTCCTCAGT+TGG - Chr1:92426372-92426391 None:intergenic 50.0%
TGGTAATAAGCCCATTGCCC+TGG - Chr1:92428720-92428739 None:intergenic 50.0%
TGTGGCAGCTGAGGTAAAAG+GGG + Chr1:92427086-92427105 MsG0180005491.01.T01:intron 50.0%
!! GAGTGTTATTTGCATGGGCC+AGG + Chr1:92428699-92428718 MsG0180005491.01.T01:CDS 50.0%
ATTTGCATGGGCCAGGGCAA+TGG + Chr1:92428706-92428725 MsG0180005491.01.T01:CDS 55.0%
GACCGTCCGATGTAGAGAGT+TGG - Chr1:92428665-92428684 None:intergenic 55.0%
GTGGCAGCTGAGGTAAAAGG+GGG + Chr1:92427087-92427106 MsG0180005491.01.T01:intron 55.0%
TTTGCATGGGCCAGGGCAAT+GGG + Chr1:92428707-92428726 MsG0180005491.01.T01:CDS 55.0%
Chromosome Type Strat End Strand Name
Chr1 gene 92425779 92429108 92425779 ID=MsG0180005491.01;Name=MsG0180005491.01
Chr1 mRNA 92425779 92429108 92425779 ID=MsG0180005491.01.T01;Parent=MsG0180005491.01;Name=MsG0180005491.01.T01;_AED=0.36;_eAED=0.36;_QI=0|0.5|0.33|1|1|1|3|215|291
Chr1 exon 92425779 92426114 92425779 ID=MsG0180005491.01.T01:exon:49699;Parent=MsG0180005491.01.T01
Chr1 exon 92426267 92426385 92426267 ID=MsG0180005491.01.T01:exon:49700;Parent=MsG0180005491.01.T01
Chr1 exon 92428473 92429108 92428473 ID=MsG0180005491.01.T01:exon:49701;Parent=MsG0180005491.01.T01
Chr1 CDS 92425779 92426114 92425779 ID=MsG0180005491.01.T01:cds;Parent=MsG0180005491.01.T01
Chr1 CDS 92426267 92426385 92426267 ID=MsG0180005491.01.T01:cds;Parent=MsG0180005491.01.T01
Chr1 CDS 92428473 92428893 92428473 ID=MsG0180005491.01.T01:cds;Parent=MsG0180005491.01.T01
Chr1 three_prime_UTR 92428894 92429108 92428894 ID=MsG0180005491.01.T01:three_prime_utr;Parent=MsG0180005491.01.T01
Gene Sequence

>MsG0180005491.01.T01

ATGGGGTCTAGTATTTCTTCAACTGCATCTATAAGAGAAAACAATAACGAAGACTCTAATTCTTCATCATCAAGAACGGGTCTTTGTGATATTCCAGAGAGTTGCATCTCTTCCATACTCATGCATCTTGATCCACCTGATATATGCAAATTGGCTAGGGTCAACCGTGCTTTTCATAGAGCTTCTTCTGCTGATTTTGTGTGGGAATCAAAGTTACCATCATGCTACAAGTTTCTTGTTAATAAATTTCTTGGTGAAGAAAATCTTTCCACTGTGACTAAGAAAGATGTCTACACAAAACTATGTCAACCTAATCGCTTTGACGGTGGTACCAAAGAAGTTTTATTGGACAAATGCAGTGGACAAGTTTGTTTGTTCATGTCATCAAGGTCTTTGAAGATAACAGGAATAGATGATAGAAGATATTGGATTTACATTCCAACTGAGGAATCCAGGTTCAAGAATGTGGCATATCTTCAACAAATGTGGTGGGTTGAAGTAATAGGAGAGCTAGAGTTTGTGTTCCCTGTGGGAAGTTACAGCATAACCTTCAGACTCCAATTGGGAAAGTCATCAAAACGATTGGGCAGACGTGTGTGCAACGTTGATCAAGTTCATGGTTGGGACATCAAGCCCGTTAGATTCCAACTCTCTACATCGGACGGTCAGCGTTCAATCTCAGAGTGTTATTTGCATGGGCCAGGGCAATGGGCTTATTACCATGTCGGAGATTTCATGGTTGTAAATCCCAATGAGTCCATAAAAATCAAGTTTTCTTTGGCTCAAATTGATTGTACTCATACCAAAGGTGGCCTCTGCATTGATAGTGCAATTATTTGTCCAACTGAGTTTAGAGGAAGACTCAAAAAATTATAG
Protein sequence

>MsG0180005491.01.T01

MGSSISSTASIRENNNEDSNSSSSRTGLCDIPESCISSILMHLDPPDICKLARVNRAFHRASSADFVWESKLPSCYKFLVNKFLGEENLSTVTKKDVYTKLCQPNRFDGGTKEVLLDKCSGQVCLFMSSRSLKITGIDDRRYWIYIPTEESRFKNVAYLQQMWWVEVIGELEFVFPVGSYSITFRLQLGKSSKRLGRRVCNVDQVHGWDIKPVRFQLSTSDGQRSISECYLHGPGQWAYYHVGDFMVVNPNESIKIKFSLAQIDCTHTKGGLCIDSAIICPTEFRGRLKKL*