AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0180005587.01

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0180005587.01.T01 MTR_1g103330 81.469 599 35 6 1 539 1 583 0.0 963
MsG0180005587.01.T01 MTR_5g006820 72.743 576 102 5 4 539 62 622 0.0 837
MsG0180005587.01.T01 MTR_1g071680 63.366 505 139 9 41 539 95 559 0.0 619
MsG0180005587.01.T01 MTR_7g095260 62.978 497 140 9 41 533 95 551 0.0 602
MsG0180005587.01.T01 MTR_7g095260 62.978 497 140 9 41 533 43 499 0.0 600
MsG0180005587.01.T01 MTR_8g043480 40.486 494 223 10 41 533 13 436 1.96e-106 326
MsG0180005587.01.T01 MTR_8g043480 40.283 494 224 10 41 533 78 501 9.76e-106 326
MsG0180005587.01.T01 MTR_6g042240 38.235 544 253 15 42 527 62 580 2.39e-100 315
MsG0180005587.01.T01 MTR_6g042240 38.235 544 253 15 42 527 102 620 9.22e-100 315
MsG0180005587.01.T01 MTR_6g042240 38.235 544 253 15 42 527 115 633 2.74e-99 313
MsG0180005587.01.T01 MTR_4g098850 37.426 505 254 14 42 514 357 831 1.98e-92 301
MsG0180005587.01.T01 MTR_4g098850 49.261 203 99 2 326 527 13 212 1.43e-56 203
MsG0180005587.01.T01 MTR_8g091360 50.714 280 116 3 256 528 310 574 1.02e-88 285
MsG0180005587.01.T01 MTR_8g091360 64.179 67 24 0 41 107 144 210 2.15e-19 92.0
MsG0180005587.01.T01 MTR_8g043480 49.818 275 125 4 260 533 44 306 3.50e-83 261
MsG0180005587.01.T01 MTR_7g100070 49.822 281 109 5 247 520 156 411 4.73e-83 266
MsG0180005587.01.T01 MTR_7g100070 65.278 72 25 0 36 107 87 158 1.40e-24 107
MsG0180005587.01.T01 MTR_7g100070 49.822 281 109 5 247 520 157 412 5.76e-83 266
MsG0180005587.01.T01 MTR_7g100070 65.278 72 25 0 36 107 88 159 1.46e-24 107
MsG0180005587.01.T01 MTR_7g100070 49.822 281 109 5 247 520 197 452 3.55e-82 265
MsG0180005587.01.T01 MTR_7g100070 65.278 72 25 0 36 107 128 199 2.33e-24 106
MsG0180005587.01.T01 MTR_1g097690 43.972 282 129 7 259 533 349 608 1.99e-69 234
MsG0180005587.01.T01 MTR_1g097690 48.810 84 43 0 42 125 106 189 1.21e-18 89.7
MsG0180005587.01.T01 MTR_5g014090 39.752 322 162 5 215 532 333 626 2.34e-66 226
MsG0180005587.01.T01 MTR_5g014090 52.941 85 38 1 42 124 110 194 3.73e-24 107
MsG0180005587.01.T01 MTR_6g072010 42.276 246 123 6 262 504 154 383 9.36e-64 213
MsG0180005587.01.T01 MTR_6g072010 56.522 69 29 1 41 108 49 117 9.68e-18 85.9
MsG0180005587.01.T01 MTR_6g072010 42.276 246 123 6 262 504 165 394 1.38e-63 213
MsG0180005587.01.T01 MTR_6g072010 56.522 69 29 1 41 108 60 128 9.74e-18 85.9
MsG0180005587.01.T01 MTR_1g038810 45.749 247 117 5 261 504 174 406 2.27e-62 211
MsG0180005587.01.T01 MTR_1g038810 53.846 65 29 1 44 107 66 130 5.50e-14 74.7
MsG0180005587.01.T01 MTR_1g038810 45.749 247 117 5 261 504 178 410 2.37e-62 211
MsG0180005587.01.T01 MTR_1g038810 54.412 68 30 1 41 107 67 134 1.63e-15 79.3
MsG0180005587.01.T01 MTR_6g009260 41.892 296 128 10 244 528 154 416 3.66e-62 211
MsG0180005587.01.T01 MTR_6g009260 61.429 70 25 1 41 108 59 128 1.51e-17 85.5
MsG0180005587.01.T01 MTR_8g091360 47.305 167 68 3 256 417 310 461 1.49e-40 153
MsG0180005587.01.T01 MTR_8g091360 64.179 67 24 0 41 107 144 210 1.61e-19 92.0
MsG0180005587.01.T01 MTR_1g097690 38.788 165 76 4 259 417 349 494 3.53e-30 124
MsG0180005587.01.T01 MTR_1g097690 48.810 84 43 0 42 125 106 189 7.55e-19 90.1
MsG0180005587.01.T01 MTR_5g014090 34.634 205 103 4 215 416 333 509 8.47e-27 114
MsG0180005587.01.T01 MTR_5g014090 52.941 85 38 1 42 124 110 194 2.40e-24 107
MsG0180005587.01.T01 MTR_1g078100 31.556 225 137 6 259 472 606 824 1.16e-20 96.7
MsG0180005587.01.T01 MTR_1g078100 28.671 286 142 9 259 503 326 590 1.79e-20 95.9
MsG0180005587.01.T01 MTR_1g078100 28.671 286 142 9 259 503 337 601 1.91e-20 95.9
MsG0180005587.01.T01 MTR_6g092670 27.311 238 125 6 264 472 646 864 6.70e-19 91.3
MsG0180005587.01.T01 MTR_1g021730 38.525 122 60 4 383 495 191 306 5.98e-13 70.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0180005587.01.T01 AT2G32010 70.463 518 117 10 41 539 94 594 0.0 724
MsG0180005587.01.T01 AT2G32010 70.463 518 117 10 41 539 94 594 0.0 724
MsG0180005587.01.T01 AT2G32010 70.463 518 117 10 41 539 94 594 0.0 724
MsG0180005587.01.T01 AT2G32010 70.463 518 117 10 41 539 94 594 0.0 724
MsG0180005587.01.T01 AT1G05470 65.009 583 133 12 4 539 59 617 0.0 717
MsG0180005587.01.T01 AT1G05470 65.009 583 133 12 4 539 59 617 0.0 717
MsG0180005587.01.T01 AT3G63240 52.517 596 173 12 1 537 1 545 0.0 556
MsG0180005587.01.T01 AT3G63240 52.517 596 173 12 1 537 1 545 0.0 556
MsG0180005587.01.T01 AT5G65090 40.845 497 235 10 41 528 13 459 1.91e-114 347
MsG0180005587.01.T01 AT5G65090 40.845 497 235 10 41 528 76 522 1.55e-113 347
MsG0180005587.01.T01 AT5G65090 40.845 497 235 10 41 528 76 522 1.55e-113 347
MsG0180005587.01.T01 AT5G04980 55.777 251 100 4 260 509 156 396 5.92e-87 274
MsG0180005587.01.T01 AT5G04980 55.777 251 100 4 260 509 220 460 3.28e-86 275
MsG0180005587.01.T01 AT5G04980 49.451 91 44 1 16 104 14 104 3.13e-19 90.9
MsG0180005587.01.T01 AT5G04980 55.777 251 100 4 260 509 191 431 3.60e-86 273
MsG0180005587.01.T01 AT5G04980 58.333 72 30 0 33 104 4 75 5.07e-19 90.1
MsG0180005587.01.T01 AT5G04980 55.777 251 100 4 260 509 191 431 3.60e-86 273
MsG0180005587.01.T01 AT5G04980 58.333 72 30 0 33 104 4 75 5.07e-19 90.1
MsG0180005587.01.T01 AT2G37440 48.092 262 116 5 261 519 113 357 3.63e-75 243
MsG0180005587.01.T01 AT2G37440 53.846 104 28 2 41 125 2 104 4.51e-23 102
MsG0180005587.01.T01 AT2G37440 48.092 262 116 5 261 519 194 438 2.98e-74 244
MsG0180005587.01.T01 AT2G37440 69.863 73 22 0 36 108 81 153 9.53e-26 110
MsG0180005587.01.T01 AT2G37440 48.092 262 116 5 261 519 194 438 2.98e-74 244
MsG0180005587.01.T01 AT2G37440 69.863 73 22 0 36 108 81 153 9.53e-26 110
MsG0180005587.01.T01 AT1G71710 42.804 271 133 5 261 527 399 651 1.53e-65 225
MsG0180005587.01.T01 AT1G71710 50.467 107 44 2 42 139 123 229 1.64e-23 105
MsG0180005587.01.T01 AT1G71710 42.804 271 133 5 261 527 408 660 1.84e-65 225
MsG0180005587.01.T01 AT1G71710 50.467 107 44 2 42 139 132 238 2.09e-23 104
MsG0180005587.01.T01 AT4G18010 41.971 274 139 4 250 519 378 635 6.62e-65 223
MsG0180005587.01.T01 AT4G18010 54.878 82 33 1 42 123 115 192 1.75e-22 102
MsG0180005587.01.T01 AT2G01900 49.383 243 108 6 262 503 154 382 1.27e-64 216
MsG0180005587.01.T01 AT2G01900 50.649 77 37 1 32 107 52 128 2.03e-15 79.0
MsG0180005587.01.T01 AT2G01900 49.383 243 108 6 262 503 162 390 1.37e-64 217
MsG0180005587.01.T01 AT2G01900 50.649 77 37 1 32 107 60 136 1.98e-15 79.0
MsG0180005587.01.T01 AT1G34120 40.741 270 132 7 261 522 182 431 6.00e-62 210
MsG0180005587.01.T01 AT1G34120 40.741 270 132 7 261 522 337 586 2.33e-60 209
MsG0180005587.01.T01 AT1G34120 61.765 68 26 0 42 109 109 176 2.55e-19 92.0
MsG0180005587.01.T01 AT1G34120 40.741 270 132 7 261 522 333 582 2.88e-60 209
MsG0180005587.01.T01 AT1G34120 61.765 68 26 0 42 109 105 172 2.59e-19 92.0
MsG0180005587.01.T01 AT2G01900 47.737 243 103 7 262 503 154 373 1.32e-59 203
MsG0180005587.01.T01 AT2G01900 50.649 77 37 1 32 107 52 128 1.98e-15 79.0
MsG0180005587.01.T01 AT1G34120 40.370 270 132 8 261 522 337 585 7.42e-58 203
MsG0180005587.01.T01 AT1G34120 61.765 68 26 0 42 109 109 176 2.59e-19 92.0
MsG0180005587.01.T01 AT4G18010 40.455 220 112 3 250 466 378 581 2.83e-47 174
MsG0180005587.01.T01 AT4G18010 54.878 82 33 1 42 123 115 192 1.46e-22 102
MsG0180005587.01.T01 AT1G34120 35.849 159 79 4 261 413 333 474 4.89e-25 108
MsG0180005587.01.T01 AT1G34120 62.687 67 25 0 43 109 106 172 1.72e-19 92.0
MsG0180005587.01.T01 AT2G43900 28.000 250 132 7 252 472 649 879 1.01e-21 100
MsG0180005587.01.T01 AT2G43900 28.000 250 132 7 252 472 649 879 1.02e-21 100
MsG0180005587.01.T01 AT1G65580 28.114 281 169 9 252 503 344 620 2.13e-20 95.9
MsG0180005587.01.T01 AT1G65580 28.114 281 169 9 252 503 610 886 2.20e-20 95.9
MsG0180005587.01.T01 AT1G05630 24.662 296 160 9 252 503 643 919 5.05e-19 91.7
MsG0180005587.01.T01 AT1G05630 25.200 250 139 7 252 472 643 873 5.13e-19 91.7
MsG0180005587.01.T01 AT2G31830 24.790 238 131 6 264 472 664 882 8.28e-18 87.8
MsG0180005587.01.T01 AT2G31830 24.000 250 142 6 252 472 652 882 9.22e-18 87.8
MsG0180005587.01.T01 AT2G31830 24.790 238 131 6 264 472 664 882 1.08e-17 87.4
MsG0180005587.01.T01 AT1G47510 31.863 204 105 9 300 495 84 261 8.75e-17 81.3
MsG0180005587.01.T01 AT1G47510 33.714 175 90 7 328 495 168 323 1.25e-16 81.6
MsG0180005587.01.T01 AT1G05630 33.333 150 82 4 370 503 806 953 1.19e-15 80.9
MsG0180005587.01.T01 AT1G47510 39.316 117 59 5 386 495 149 260 4.73e-13 70.1

Find 126 sgRNAs with CRISPR-Local

Find 223 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GACCTGTTTATGGCATATTT+TGG 0.108267 1:+93674608 MsG0180005587.01.T01:CDS
CAAGCAGATGCTGTTGTTTA+TGG 0.156723 1:+93671810 MsG0180005587.01.T01:CDS
TCAGACCACAGACCTGTTTA+TGG 0.185501 1:+93674598 MsG0180005587.01.T01:CDS
GGCTAATATGAGAGTTATTT+TGG 0.185668 1:+93673534 MsG0180005587.01.T01:CDS
CCAGCTGACATTTATGTTCT+TGG 0.223313 1:+93672424 MsG0180005587.01.T01:CDS
CTAGTTTAAGATGGGGTTAT+AGG 0.246789 1:+93673105 MsG0180005587.01.T01:CDS
CACTTGTTGAGATGCAAAAT+TGG 0.283420 1:+93674109 MsG0180005587.01.T01:CDS
CATAATGTAGTCGAATTATA+TGG 0.285981 1:+93674037 MsG0180005587.01.T01:intron
GCTCTCATGGTCAAAGAAAA+TGG 0.317894 1:+93671747 MsG0180005587.01.T01:intron
CGCGAACATAAGACAATTGA+TGG 0.333710 1:-93674561 None:intergenic
ATAGGTGTGACCGTATTCTA+TGG 0.336360 1:+93674524 MsG0180005587.01.T01:intron
TCAGTATATCCACCGGAATA+TGG 0.344859 1:-93674712 None:intergenic
GCTATATCCATCTTCATTAG+AGG 0.346736 1:-93673267 None:intergenic
CCAGACAACTTCTAGTGGTT+GGG 0.363056 1:+93672983 MsG0180005587.01.T01:CDS
GAAGAACTTCTGCCATATTC+CGG 0.366341 1:+93674700 MsG0180005587.01.T01:CDS
GGCTTGGAGATTTGAATTAT+CGG 0.367306 1:+93674058 MsG0180005587.01.T01:CDS
CCACTACTTCCACTGGTTCC+AGG 0.367772 1:-93672855 None:intergenic
TCTACAACTGGCTGAGGAAT+TGG 0.371098 1:-93672894 None:intergenic
ACAAGGTTTCCTCGTGTTCA+TGG 0.380420 1:+93673697 MsG0180005587.01.T01:CDS
CAGCTGACATTTATGTTCTT+GGG 0.385507 1:+93672425 MsG0180005587.01.T01:CDS
TTAGTTGAATACTTGTAAGT+TGG 0.398251 1:-93674326 None:intergenic
AAGACATTAAACAATCTTCC+TGG 0.405151 1:+93672837 MsG0180005587.01.T01:CDS
GTAATTTGAGTGTAGATGAT+TGG 0.405806 1:+93672386 MsG0180005587.01.T01:CDS
GTTGAATACTTGTAAGTTGG+AGG 0.434410 1:-93674323 None:intergenic
AAGAAGAAATTCTGATGTAA+TGG 0.434526 1:+93673660 MsG0180005587.01.T01:CDS
GATGAAAATGATGGTTGCTT+AGG 0.434667 1:+93673508 MsG0180005587.01.T01:CDS
CTCTGCCCCTAGGATATTAC+CGG 0.436957 1:-93672775 None:intergenic
GCCCAAAATATGCCATAAAC+AGG 0.437361 1:-93674610 None:intergenic
CATCAATTGTCTTATGTTCG+CGG 0.437643 1:+93674562 MsG0180005587.01.T01:CDS
ATAGGCCTAGTGACTATTCA+AGG 0.450945 1:+93673123 MsG0180005587.01.T01:CDS
ACTTTGATCCTAGTTTAAGA+TGG 0.450999 1:+93673096 MsG0180005587.01.T01:CDS
TTGAATGCCGGTAATATCCT+AGG 0.455415 1:+93672768 MsG0180005587.01.T01:CDS
CCCAACCACTAGAAGTTGTC+TGG 0.456209 1:-93672983 None:intergenic
TTTAACCTCAGGACAGAAAG+AGG 0.459850 1:+93673627 MsG0180005587.01.T01:CDS
TATTCACCGATGTCCACTAA+TGG 0.460168 1:+93673236 MsG0180005587.01.T01:CDS
CTTTGATCCTAGTTTAAGAT+GGG 0.463958 1:+93673097 MsG0180005587.01.T01:CDS
TTCTCAGTCAAGAATTGAGT+TGG 0.478219 1:+93674678 MsG0180005587.01.T01:CDS
TATTGCAGTCATTTAACCTC+AGG 0.480590 1:+93673616 MsG0180005587.01.T01:CDS
GTTTGATGAATTAGCTCTCA+TGG 0.485296 1:+93671734 MsG0180005587.01.T01:intron
AGAATTCGTCTTTCTTCCAC+AGG 0.487504 1:+93672952 MsG0180005587.01.T01:CDS
GTAGCTACATGGAATGTAGC+TGG 0.489460 1:+93672349 MsG0180005587.01.T01:CDS
TCCAGACAACTTCTAGTGGT+TGG 0.491468 1:+93672982 MsG0180005587.01.T01:CDS
ATCACCCTCTTTCTGTCCTG+AGG 0.491996 1:-93673632 None:intergenic
CTACACTCAAATTACTTGGT+GGG 0.495753 1:-93672378 None:intergenic
TCATCTACACTCAAATTACT+TGG 0.496940 1:-93672382 None:intergenic
CTATAACCCCATCTTAAACT+AGG 0.499596 1:-93673104 None:intergenic
TGTAGTCGAATTATATGGCT+TGG 0.501223 1:+93674042 MsG0180005587.01.T01:intron
TCTGCATTCAGCTCTACAAC+TGG 0.501429 1:-93672906 None:intergenic
CCTCGTTGCAAGTAAGCAAA+TGG 0.505118 1:+93673313 MsG0180005587.01.T01:CDS
GAAGATGGATATAGCATGCC+AGG 0.505717 1:+93673275 MsG0180005587.01.T01:CDS
TGTGACCGTATTCTATGGTA+TGG 0.505817 1:+93674529 MsG0180005587.01.T01:CDS
CCCCATCTTGAATAGTCACT+TGG 0.508310 1:-93673164 None:intergenic
CGCCTTTCACCCATACGGTA+AGG 0.509680 1:-93673346 None:intergenic
CAGACAACTTCTAGTGGTTG+GGG 0.516388 1:+93672984 MsG0180005587.01.T01:CDS
AACTTCTAGTGGTTGGGGAA+TGG 0.521620 1:+93672989 MsG0180005587.01.T01:CDS
CTTCTCCATACCATAGAATA+CGG 0.523333 1:-93674534 None:intergenic
TGGGAATCTACCTTACCGTA+TGG 0.527175 1:+93673336 MsG0180005587.01.T01:CDS
AGAGGCAGATCCACCATTAG+TGG 0.529627 1:-93673249 None:intergenic
GGATCTGCCTCTAATGAAGA+TGG 0.530173 1:+93673260 MsG0180005587.01.T01:CDS
TCTCTCCTACCGCTCTGCTA+AGG 0.532367 1:+93674086 MsG0180005587.01.T01:CDS
TACCTTACCGTATGGGTGAA+AGG 0.532707 1:+93673344 MsG0180005587.01.T01:CDS
ACCAAGTGACTATTCAAGAT+GGG 0.537065 1:+93673163 MsG0180005587.01.T01:CDS
AAATGATGGTTGCTTAGGAT+TGG 0.538867 1:+93673513 MsG0180005587.01.T01:CDS
GACCAAGTGACTATTCAAGA+TGG 0.545416 1:+93673162 MsG0180005587.01.T01:CDS
AAGTGCCTTAGCAGAGCGGT+AGG 0.547515 1:-93674091 None:intergenic
CTTGCCCTTGAATAGTCACT+AGG 0.549171 1:-93673128 None:intergenic
AGGCAGTACCTTGAATGTCC+TGG 0.550535 1:-93673293 None:intergenic
CGGTAATATCCTAGGGGCAG+AGG 0.551227 1:+93672776 MsG0180005587.01.T01:CDS
TACACTCAAATTACTTGGTG+GGG 0.552545 1:-93672377 None:intergenic
GGCCATTGTCCTCTGCCCCT+AGG 0.552956 1:-93672785 None:intergenic
CAGTTCGCCTTTCACCCATA+CGG 0.553302 1:-93673351 None:intergenic
CTGTATCTTCGATCAACTTG+TGG 0.554421 1:-93673035 None:intergenic
AGAGCTGAATGCAGATTTCG+AGG 0.555270 1:+93672914 MsG0180005587.01.T01:CDS
TCTACACTCAAATTACTTGG+TGG 0.557302 1:-93672379 None:intergenic
GAGATAGTTCCGTTGAATGC+CGG 0.558858 1:+93672756 MsG0180005587.01.T01:CDS
CCAAGAACATAAATGTCAGC+TGG 0.562731 1:-93672424 None:intergenic
ATAGCATGCCAGGACATTCA+AGG 0.564632 1:+93673285 MsG0180005587.01.T01:CDS
ATGTGATAATCTTACCAAGC+AGG 0.565102 1:-93674401 None:intergenic
TTCAGCTCTACAACTGGCTG+AGG 0.570219 1:-93672900 None:intergenic
AGGATATTACCGGCATTCAA+CGG 0.574425 1:-93672765 None:intergenic
CCTGGAACCAGTGGAAGTAG+TGG 0.574999 1:+93672855 MsG0180005587.01.T01:CDS
AACAATCTTCCTGGAACCAG+TGG 0.576589 1:+93672846 MsG0180005587.01.T01:CDS
ACTAATTCAGATCGATACTC+AGG 0.577073 1:+93674344 MsG0180005587.01.T01:CDS
GTTTAGTTCAGTATATCCAC+CGG 0.581440 1:-93674719 None:intergenic
CGTTGCAAGTAAGCAAATGG+TGG 0.581706 1:+93673316 MsG0180005587.01.T01:CDS
ATAACATCCACTACTTCCAC+TGG 0.583435 1:-93672862 None:intergenic
TGAATGCCGGTAATATCCTA+GGG 0.584511 1:+93672769 MsG0180005587.01.T01:CDS
GGGAATCTACCTTACCGTAT+GGG 0.584626 1:+93673337 MsG0180005587.01.T01:CDS
ACTTGTGGTTGCACAAGTGA+AGG 0.585723 1:-93673020 None:intergenic
TCCGTGAGGTGACTCAACCT+CGG 0.588228 1:-93674632 None:intergenic
CGTATTCTATGGTATGGAGA+AGG 0.589620 1:+93674535 MsG0180005587.01.T01:CDS
GGTGAATATAAGACGGTACT+CGG 0.592451 1:-93673221 None:intergenic
GCACAGACATCTAATTGAGA+TGG 0.596847 1:-93673574 None:intergenic
GCAGATGCTGTTGTTTATGG+AGG 0.601488 1:+93671813 MsG0180005587.01.T01:CDS
AAACTAGGATCAAAGTCACT+AGG 0.603336 1:-93673089 None:intergenic
TCACCGATGTCCACTAATGG+TGG 0.611075 1:+93673239 MsG0180005587.01.T01:CDS
TTGTCTGGAACGATCGCCTG+TGG 0.616385 1:-93672968 None:intergenic
TTTGATCCTAGTTTAAGATG+GGG 0.618992 1:+93673098 MsG0180005587.01.T01:CDS
CGTTCCATCCCACAAAAGCA+CGG 0.619057 1:-93674283 None:intergenic
GCCGAGGTTGAGTCACCTCA+CGG 0.620878 1:+93674631 MsG0180005587.01.T01:CDS
GAGCTGAATGCAGATTTCGA+GGG 0.621883 1:+93672915 MsG0180005587.01.T01:CDS
ATCCTAGGGGCAGAGGACAA+TGG 0.622061 1:+93672783 MsG0180005587.01.T01:CDS
TTGTCAACGCCATGAACACG+AGG 0.624907 1:-93673706 None:intergenic
CAGATTTCGAGGGATCAGCT+AGG 0.626550 1:+93672925 MsG0180005587.01.T01:CDS
ATAAATGTCAGCTGGTGGTG+AGG 0.628782 1:-93672416 None:intergenic
GTTGCAAGTAAGCAAATGGT+GGG 0.629979 1:+93673317 MsG0180005587.01.T01:CDS
TGATGATGACAATGGCCTTG+TGG 0.631802 1:+93673193 MsG0180005587.01.T01:CDS
ATATGCCATAAACAGGTCTG+TGG 0.638756 1:-93674603 None:intergenic
AGGAGATGATATGCACCCCA+AGG 0.644054 1:+93674364 MsG0180005587.01.T01:CDS
AAGACTCTTACTCGTGCTCG+AGG 0.646419 1:-93673750 None:intergenic
TAGGCCTAGTGACTATTCAA+GGG 0.652233 1:+93673124 MsG0180005587.01.T01:CDS
CCAAGTGACTATTCAAGATG+GGG 0.653125 1:+93673164 MsG0180005587.01.T01:CDS
CGGTACTCGGTGAATCCACA+AGG 0.653743 1:-93673208 None:intergenic
TCGTTCCAGACAACTTCTAG+TGG 0.655270 1:+93672978 MsG0180005587.01.T01:CDS
GAACTTCTGCCATATTCCGG+TGG 0.669521 1:+93674703 MsG0180005587.01.T01:CDS
TTAACCTCAGGACAGAAAGA+GGG 0.672945 1:+93673628 MsG0180005587.01.T01:CDS
AGAACATAAATGTCAGCTGG+TGG 0.673457 1:-93672421 None:intergenic
ACTGGCTGAGGAATTGGAGA+CGG 0.681528 1:-93672888 None:intergenic
GGACATCGGTGAATATAAGA+CGG 0.682139 1:-93673228 None:intergenic
GATCCACCATTAGTGGACAT+CGG 0.683487 1:-93673242 None:intergenic
CCATTTGCTTACTTGCAACG+AGG 0.692457 1:-93673313 None:intergenic
TCGTGCTCGAGGATTGTCTG+AGG 0.692935 1:-93673739 None:intergenic
CAACAAGTGCCTTAGCAGAG+CGG 0.698793 1:-93674095 None:intergenic
TGAGAATTCCAAGAACACCA+AGG 0.705085 1:+93671627 MsG0180005587.01.T01:CDS
GGTTCGTCTGATGATGACAA+TGG 0.726292 1:+93673185 MsG0180005587.01.T01:CDS
GAATGCCGGTAATATCCTAG+GGG 0.756791 1:+93672770 MsG0180005587.01.T01:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TTATTTCAATATTTATATGT+TGG + Chr1:93671669-93671688 MsG0180005587.01.T01:intron 10.0%
!!! TTATTTTATAAAATCCTATT+AGG - Chr1:93674429-93674448 None:intergenic 10.0%
!! ACCAAGAAAAATAAAATAAA+AGG + Chr1:93672283-93672302 MsG0180005587.01.T01:intron 15.0%
!! TAACTTTAACAATATTACAT+TGG - Chr1:93674206-93674225 None:intergenic 15.0%
!! TCTAAAGAAAAACAAAAATT+AGG - Chr1:93673474-93673493 None:intergenic 15.0%
!!! TGAACATTTTTTCTTTTTAT+AGG + Chr1:93674506-93674525 MsG0180005587.01.T01:intron 15.0%
!!! TTATTTTATGATGAAAATGA+TGG + Chr1:93673499-93673518 MsG0180005587.01.T01:CDS 15.0%
!!! TTTTATTTTTCTTGGTAAAT+TGG - Chr1:93672279-93672298 None:intergenic 15.0%
!! AACAATTCATATTCTTCAAT+TGG + Chr1:93671888-93671907 MsG0180005587.01.T01:intron 20.0%
!! ATAATAATTGTCAAAAACCT+TGG - Chr1:93671647-93671666 None:intergenic 20.0%
!! TATAGATTACTACAATTTCT+TGG + Chr1:93671933-93671952 MsG0180005587.01.T01:intron 20.0%
!!! AATTTTTAGGACTAAAAAGT+TGG + Chr1:93672609-93672628 MsG0180005587.01.T01:intron 20.0%
!!! GCCTTTTATTTTATTTTTCT+TGG - Chr1:93672287-93672306 None:intergenic 20.0%
! AAAAATGTTCATGTCTTCAT+AGG - Chr1:93674497-93674516 None:intergenic 25.0%
! AACAATAAACATGAGGTTAA+TGG - Chr1:93674178-93674197 None:intergenic 25.0%
! AAGAAGAAATTCTGATGTAA+TGG + Chr1:93673660-93673679 MsG0180005587.01.T01:CDS 25.0%
! ACTTGTGCAAATGTAAATAT+CGG - Chr1:93672129-93672148 None:intergenic 25.0%
! AGTCCTAAAAATTACAAAAC+CGG - Chr1:93672602-93672621 None:intergenic 25.0%
! ATCATAAACTTAACTGTTAC+AGG - Chr1:93673968-93673987 None:intergenic 25.0%
! ATTAACCATTAGTTATTCTG+TGG - Chr1:93673898-93673917 None:intergenic 25.0%
! CATAATGTAGTCGAATTATA+TGG + Chr1:93674037-93674056 MsG0180005587.01.T01:intron 25.0%
! CTTTAACAATATTACATTGG+AGG - Chr1:93674203-93674222 None:intergenic 25.0%
! TGACTACTTATATTAGTGTT+TGG + Chr1:93673837-93673856 MsG0180005587.01.T01:intron 25.0%
! TTAGTTGAATACTTGTAAGT+TGG - Chr1:93674329-93674348 None:intergenic 25.0%
!!! AATATGAGAGTTATTTTGGT+TGG + Chr1:93673538-93673557 MsG0180005587.01.T01:CDS 25.0%
!!! TATCCGGTTTTGTAATTTTT+AGG + Chr1:93672596-93672615 MsG0180005587.01.T01:intron 25.0%
AAGACATTAAACAATCTTCC+TGG + Chr1:93672837-93672856 MsG0180005587.01.T01:CDS 30.0%
ACAATCAAAAAGAGCAAAAC+AGG + Chr1:93672043-93672062 MsG0180005587.01.T01:intron 30.0%
ACTTTGATCCTAGTTTAAGA+TGG + Chr1:93673096-93673115 MsG0180005587.01.T01:CDS 30.0%
AGATTATCACATCACCTAAT+AGG + Chr1:93674412-93674431 MsG0180005587.01.T01:intron 30.0%
ATACCATCAAGAACTTCAAA+AGG - Chr1:93672092-93672111 None:intergenic 30.0%
GAACAGTAACTGAGTTTATT+TGG - Chr1:93671962-93671981 None:intergenic 30.0%
GTAATTTGAGTGTAGATGAT+TGG + Chr1:93672386-93672405 MsG0180005587.01.T01:CDS 30.0%
TACCATCAAGAACTTCAAAA+GGG - Chr1:93672091-93672110 None:intergenic 30.0%
TCATCTACACTCAAATTACT+TGG - Chr1:93672385-93672404 None:intergenic 30.0%
TCCTTAACTATTGATACTCA+TGG + Chr1:93674234-93674253 MsG0180005587.01.T01:intron 30.0%
TGAAGTTGGCATTAATTGTT+CGG + Chr1:93672485-93672504 MsG0180005587.01.T01:intron 30.0%
TGGAGATTCTTAAAAAGACA+AGG + Chr1:93673680-93673699 MsG0180005587.01.T01:CDS 30.0%
TTGAGAATAGAGCAAAAAAG+AGG + Chr1:93674260-93674279 MsG0180005587.01.T01:CDS 30.0%
! ACCTGTTTATGGCATATTTT+GGG + Chr1:93674609-93674628 MsG0180005587.01.T01:CDS 30.0%
! CTTTGATCCTAGTTTAAGAT+GGG + Chr1:93673097-93673116 MsG0180005587.01.T01:CDS 30.0%
! GGCTAATATGAGAGTTATTT+TGG + Chr1:93673534-93673553 MsG0180005587.01.T01:CDS 30.0%
! TTTGATCCTAGTTTAAGATG+GGG + Chr1:93673098-93673117 MsG0180005587.01.T01:CDS 30.0%
!!! TATTTTGGTTGGATTTTGCA+GGG + Chr1:93673549-93673568 MsG0180005587.01.T01:CDS 30.0%
!!! TTATTTTGGTTGGATTTTGC+AGG + Chr1:93673548-93673567 MsG0180005587.01.T01:CDS 30.0%
AAACTAGGATCAAAGTCACT+AGG - Chr1:93673092-93673111 None:intergenic 35.0%
AAATGATGGTTGCTTAGGAT+TGG + Chr1:93673513-93673532 MsG0180005587.01.T01:CDS 35.0%
AAGCTCCACAGAATAACTAA+TGG + Chr1:93673890-93673909 MsG0180005587.01.T01:intron 35.0%
AAGGGAATGATTCATGGAAA+TGG - Chr1:93672073-93672092 None:intergenic 35.0%
ACCAAGTGACTATTCAAGAT+GGG + Chr1:93673163-93673182 MsG0180005587.01.T01:CDS 35.0%
ACTAATTCAGATCGATACTC+AGG + Chr1:93674344-93674363 MsG0180005587.01.T01:CDS 35.0%
AGAGACTTGTAAGTGTGTAT+AGG - Chr1:93672560-93672579 None:intergenic 35.0%
ATGTGATAATCTTACCAAGC+AGG - Chr1:93674404-93674423 None:intergenic 35.0%
CAGCTGACATTTATGTTCTT+GGG + Chr1:93672425-93672444 MsG0180005587.01.T01:CDS 35.0%
CATCAATTGTCTTATGTTCG+CGG + Chr1:93674562-93674581 MsG0180005587.01.T01:CDS 35.0%
CTACACTCAAATTACTTGGT+GGG - Chr1:93672381-93672400 None:intergenic 35.0%
CTATAACCCCATCTTAAACT+AGG - Chr1:93673107-93673126 None:intergenic 35.0%
CTTCAAAAGGGAATGATTCA+TGG - Chr1:93672079-93672098 None:intergenic 35.0%
CTTCTCCATACCATAGAATA+CGG - Chr1:93674537-93674556 None:intergenic 35.0%
GAACAATTAATGCCAACTTC+AGG - Chr1:93672486-93672505 None:intergenic 35.0%
GAGACTTGTAAGTGTGTATA+GGG - Chr1:93672559-93672578 None:intergenic 35.0%
GATGAAAATGATGGTTGCTT+AGG + Chr1:93673508-93673527 MsG0180005587.01.T01:CDS 35.0%
GATGGGATATCTAGGAAATA+AGG + Chr1:93673421-93673440 MsG0180005587.01.T01:intron 35.0%
GCCATGAGTATCAATAGTTA+AGG - Chr1:93674238-93674257 None:intergenic 35.0%
GCTATATCCATCTTCATTAG+AGG - Chr1:93673270-93673289 None:intergenic 35.0%
GGAGGAAAACAATAAACATG+AGG - Chr1:93674185-93674204 None:intergenic 35.0%
GGCTTGGAGATTTGAATTAT+CGG + Chr1:93674058-93674077 MsG0180005587.01.T01:CDS 35.0%
GTCATTCGTAAAGCAGTTAA+GGG - Chr1:93672691-93672710 None:intergenic 35.0%
TATTGCAGTCATTTAACCTC+AGG + Chr1:93673616-93673635 MsG0180005587.01.T01:CDS 35.0%
TCTACACTCAAATTACTTGG+TGG - Chr1:93672382-93672401 None:intergenic 35.0%
TCTTGAAATCTGCAAGAGAA+AGG - Chr1:93672738-93672757 None:intergenic 35.0%
TCTTGGTAAATTGGAGAAGT+AGG - Chr1:93672270-93672289 None:intergenic 35.0%
TGTAGTCGAATTATATGGCT+TGG + Chr1:93674042-93674061 MsG0180005587.01.T01:intron 35.0%
TGTCATTCGTAAAGCAGTTA+AGG - Chr1:93672692-93672711 None:intergenic 35.0%
TGTGCAAATGTAAATATCGG+CGG - Chr1:93672126-93672145 None:intergenic 35.0%
TTATAGTCTTCTCCTGAAGT+TGG + Chr1:93672471-93672490 MsG0180005587.01.T01:intron 35.0%
TTATCGATGTGCAGAACTAT+AGG + Chr1:93672241-93672260 MsG0180005587.01.T01:intron 35.0%
TTCTCAGTCAAGAATTGAGT+TGG + Chr1:93674678-93674697 MsG0180005587.01.T01:CDS 35.0%
! ACACTTACAAGTCTCTAAAG+AGG + Chr1:93672564-93672583 MsG0180005587.01.T01:intron 35.0%
! ATCGTGTAATTTTCGGTAAC+AGG + Chr1:93673066-93673085 MsG0180005587.01.T01:CDS 35.0%
! CACTTACAAGTCTCTAAAGA+GGG + Chr1:93672565-93672584 MsG0180005587.01.T01:intron 35.0%
! CACTTGTTGAGATGCAAAAT+TGG + Chr1:93674109-93674128 MsG0180005587.01.T01:CDS 35.0%
! CTAGTTTAAGATGGGGTTAT+AGG + Chr1:93673105-93673124 MsG0180005587.01.T01:CDS 35.0%
! CTTTTCTTCAATTTTCCGTG+AGG - Chr1:93674649-93674668 None:intergenic 35.0%
! GACCTGTTTATGGCATATTT+TGG + Chr1:93674608-93674627 MsG0180005587.01.T01:CDS 35.0%
! GTTGAATACTTGTAAGTTGG+AGG - Chr1:93674326-93674345 None:intergenic 35.0%
! GTTTAGTTCAGTATATCCAC+CGG - Chr1:93674722-93674741 None:intergenic 35.0%
! GTTTGATGAATTAGCTCTCA+TGG + Chr1:93671734-93671753 MsG0180005587.01.T01:intron 35.0%
! GTTTGCGATCGTGTAATTTT+CGG + Chr1:93673059-93673078 MsG0180005587.01.T01:CDS 35.0%
! TACACTCAAATTACTTGGTG+GGG - Chr1:93672380-93672399 None:intergenic 35.0%
!! AACATGAAAGTATCGTGTGT+TGG + Chr1:93673389-93673408 MsG0180005587.01.T01:intron 35.0%
!! TTGCTCTTTTTGATTGTGCA+TGG - Chr1:93672040-93672059 None:intergenic 35.0%
!!! ATTTTGGTTGGATTTTGCAG+GGG + Chr1:93673550-93673569 MsG0180005587.01.T01:CDS 35.0%
!!! GATAAGAGCCAACCATTTTT+TGG - Chr1:93672814-93672833 None:intergenic 35.0%
!!! TTCCCTTTTGAAGTTCTTGA+TGG + Chr1:93672086-93672105 MsG0180005587.01.T01:intron 35.0%
AAAAAAGGAGAACACCTGCT+TGG + Chr1:93674387-93674406 MsG0180005587.01.T01:CDS 40.0%
AAAGAGGGACAACAAGTATC+CGG + Chr1:93672580-93672599 MsG0180005587.01.T01:intron 40.0%
AGAACATAAATGTCAGCTGG+TGG - Chr1:93672424-93672443 None:intergenic 40.0%
AGAATTCGTCTTTCTTCCAC+AGG + Chr1:93672952-93672971 MsG0180005587.01.T01:CDS 40.0%
AGAGGATTGATGGGATATCT+AGG + Chr1:93673413-93673432 MsG0180005587.01.T01:intron 40.0%
AGGATATTACCGGCATTCAA+CGG - Chr1:93672768-93672787 None:intergenic 40.0%
AGTTACTGTTCCTTCTTAGG+AGG + Chr1:93671971-93671990 MsG0180005587.01.T01:intron 40.0%
ATAACATCCACTACTTCCAC+TGG - Chr1:93672865-93672884 None:intergenic 40.0%
ATAGGCCTAGTGACTATTCA+AGG + Chr1:93673123-93673142 MsG0180005587.01.T01:CDS 40.0%
ATAGGTGTGACCGTATTCTA+TGG + Chr1:93674524-93674543 MsG0180005587.01.T01:intron 40.0%
ATATGCACCCCAAGGAAAAA+AGG + Chr1:93674372-93674391 MsG0180005587.01.T01:CDS 40.0%
ATATGCCATAAACAGGTCTG+TGG - Chr1:93674606-93674625 None:intergenic 40.0%
CCAAGAACATAAATGTCAGC+TGG - Chr1:93672427-93672446 None:intergenic 40.0%
CCAAGTGACTATTCAAGATG+GGG + Chr1:93673164-93673183 MsG0180005587.01.T01:CDS 40.0%
CCAGCTGACATTTATGTTCT+TGG + Chr1:93672424-93672443 MsG0180005587.01.T01:CDS 40.0%
CGCGAACATAAGACAATTGA+TGG - Chr1:93674564-93674583 None:intergenic 40.0%
CGTATTCTATGGTATGGAGA+AGG + Chr1:93674535-93674554 MsG0180005587.01.T01:CDS 40.0%
CTCAGTTACTGTTCCTTCTT+AGG + Chr1:93671968-93671987 MsG0180005587.01.T01:intron 40.0%
CTGTATCTTCGATCAACTTG+TGG - Chr1:93673038-93673057 None:intergenic 40.0%
GAAGAACTTCTGCCATATTC+CGG + Chr1:93674700-93674719 MsG0180005587.01.T01:CDS 40.0%
GACCAAGTGACTATTCAAGA+TGG + Chr1:93673162-93673181 MsG0180005587.01.T01:CDS 40.0%
GCACAGACATCTAATTGAGA+TGG - Chr1:93673577-93673596 None:intergenic 40.0%
GCCCAAAATATGCCATAAAC+AGG - Chr1:93674613-93674632 None:intergenic 40.0%
GCTCTCATGGTCAAAGAAAA+TGG + Chr1:93671747-93671766 MsG0180005587.01.T01:intron 40.0%
GGACATCGGTGAATATAAGA+CGG - Chr1:93673231-93673250 None:intergenic 40.0%
GGTGAATATAAGACGGTACT+CGG - Chr1:93673224-93673243 None:intergenic 40.0%
GTGAGGTTGAATATGGAAGT+AGG + Chr1:93671993-93672012 MsG0180005587.01.T01:intron 40.0%
GTTGCAAGTAAGCAAATGGT+GGG + Chr1:93673317-93673336 MsG0180005587.01.T01:CDS 40.0%
TAGGCCTAGTGACTATTCAA+GGG + Chr1:93673124-93673143 MsG0180005587.01.T01:CDS 40.0%
TATTCACCGATGTCCACTAA+TGG + Chr1:93673236-93673255 MsG0180005587.01.T01:CDS 40.0%
TCAGTATATCCACCGGAATA+TGG - Chr1:93674715-93674734 None:intergenic 40.0%
TCTCTGTTCACAGCAATGAA+GGG - Chr1:93672161-93672180 None:intergenic 40.0%
TGAATGCCGGTAATATCCTA+GGG + Chr1:93672769-93672788 MsG0180005587.01.T01:CDS 40.0%
TGAGAATTCCAAGAACACCA+AGG + Chr1:93671627-93671646 MsG0180005587.01.T01:CDS 40.0%
TGTGAACAGAGAAGTTTAGC+AGG + Chr1:93672169-93672188 MsG0180005587.01.T01:intron 40.0%
TGTGACCGTATTCTATGGTA+TGG + Chr1:93674529-93674548 MsG0180005587.01.T01:CDS 40.0%
TTAACCTCAGGACAGAAAGA+GGG + Chr1:93673628-93673647 MsG0180005587.01.T01:CDS 40.0%
TTAGGAGGTGAGGTTGAATA+TGG + Chr1:93671986-93672005 MsG0180005587.01.T01:intron 40.0%
TTCTCTGTTCACAGCAATGA+AGG - Chr1:93672162-93672181 None:intergenic 40.0%
TTCTGCACATCGATAATTCG+AGG - Chr1:93672237-93672256 None:intergenic 40.0%
TTGAATGCCGGTAATATCCT+AGG + Chr1:93672768-93672787 MsG0180005587.01.T01:CDS 40.0%
TTTAACCTCAGGACAGAAAG+AGG + Chr1:93673627-93673646 MsG0180005587.01.T01:CDS 40.0%
! AGCAGCATTTTGTAGCTACA+TGG + Chr1:93672338-93672357 MsG0180005587.01.T01:intron 40.0%
! CAAGCAGATGCTGTTGTTTA+TGG + Chr1:93671810-93671829 MsG0180005587.01.T01:CDS 40.0%
! GGGTAAGAATTGTTGCTTGA+CGG + Chr1:93672445-93672464 MsG0180005587.01.T01:intron 40.0%
!! GTCAAAAACCTTGGTGTTCT+TGG - Chr1:93671638-93671657 None:intergenic 40.0%
!!! AGGTGTTCTCCTTTTTTCCT+TGG - Chr1:93674384-93674403 None:intergenic 40.0%
!!! GGTGTTCTCCTTTTTTCCTT+GGG - Chr1:93674383-93674402 None:intergenic 40.0%
!!! GTGTTCTCCTTTTTTCCTTG+GGG - Chr1:93674382-93674401 None:intergenic 40.0%
AACAATCTTCCTGGAACCAG+TGG + Chr1:93672846-93672865 MsG0180005587.01.T01:CDS 45.0%
AACTTCTAGTGGTTGGGGAA+TGG + Chr1:93672989-93673008 MsG0180005587.01.T01:CDS 45.0%
ACAAGGTTTCCTCGTGTTCA+TGG + Chr1:93673697-93673716 MsG0180005587.01.T01:CDS 45.0%
ACAATGGCCCTGCCAAAAAA+TGG + Chr1:93672799-93672818 MsG0180005587.01.T01:CDS 45.0%
ACTTGTGGTTGCACAAGTGA+AGG - Chr1:93673023-93673042 None:intergenic 45.0%
AGAGCTGAATGCAGATTTCG+AGG + Chr1:93672914-93672933 MsG0180005587.01.T01:CDS 45.0%
ATAGCATGCCAGGACATTCA+AGG + Chr1:93673285-93673304 MsG0180005587.01.T01:CDS 45.0%
CAGACAACTTCTAGTGGTTG+GGG + Chr1:93672984-93673003 MsG0180005587.01.T01:CDS 45.0%
CCAGACAACTTCTAGTGGTT+GGG + Chr1:93672983-93673002 MsG0180005587.01.T01:CDS 45.0%
CCATTTGCTTACTTGCAACG+AGG - Chr1:93673316-93673335 None:intergenic 45.0%
CCCCATCTTGAATAGTCACT+TGG - Chr1:93673167-93673186 None:intergenic 45.0%
CCTCGTTGCAAGTAAGCAAA+TGG + Chr1:93673313-93673332 MsG0180005587.01.T01:CDS 45.0%
CGTTGCAAGTAAGCAAATGG+TGG + Chr1:93673316-93673335 MsG0180005587.01.T01:CDS 45.0%
CTTGCCCTTGAATAGTCACT+AGG - Chr1:93673131-93673150 None:intergenic 45.0%
GAAGATGGATATAGCATGCC+AGG + Chr1:93673275-93673294 MsG0180005587.01.T01:CDS 45.0%
GAATGCCGGTAATATCCTAG+GGG + Chr1:93672770-93672789 MsG0180005587.01.T01:CDS 45.0%
GAGATAGTTCCGTTGAATGC+CGG + Chr1:93672756-93672775 MsG0180005587.01.T01:CDS 45.0%
GAGCTGAATGCAGATTTCGA+GGG + Chr1:93672915-93672934 MsG0180005587.01.T01:CDS 45.0%
GCACATCGATAATTCGAGGA+TGG - Chr1:93672233-93672252 None:intergenic 45.0%
GGATCTGCCTCTAATGAAGA+TGG + Chr1:93673260-93673279 MsG0180005587.01.T01:CDS 45.0%
GGGAATCTACCTTACCGTAT+GGG + Chr1:93673337-93673356 MsG0180005587.01.T01:CDS 45.0%
GTAGCTACATGGAATGTAGC+TGG + Chr1:93672349-93672368 MsG0180005587.01.T01:CDS 45.0%
TACCTTACCGTATGGGTGAA+AGG + Chr1:93673344-93673363 MsG0180005587.01.T01:CDS 45.0%
TCAGACCACAGACCTGTTTA+TGG + Chr1:93674598-93674617 MsG0180005587.01.T01:CDS 45.0%
TCCAGACAACTTCTAGTGGT+TGG + Chr1:93672982-93673001 MsG0180005587.01.T01:CDS 45.0%
TCGTTCCAGACAACTTCTAG+TGG + Chr1:93672978-93672997 MsG0180005587.01.T01:CDS 45.0%
TCTACAACTGGCTGAGGAAT+TGG - Chr1:93672897-93672916 None:intergenic 45.0%
TCTGCATTCAGCTCTACAAC+TGG - Chr1:93672909-93672928 None:intergenic 45.0%
TGGGAATCTACCTTACCGTA+TGG + Chr1:93673336-93673355 MsG0180005587.01.T01:CDS 45.0%
TTCAACCTCACCTCCTAAGA+AGG - Chr1:93671984-93672003 None:intergenic 45.0%
! AAAAAGAGGCCGTGCTTTTG+TGG + Chr1:93674274-93674293 MsG0180005587.01.T01:CDS 45.0%
! AAAAGAGGCCGTGCTTTTGT+GGG + Chr1:93674275-93674294 MsG0180005587.01.T01:CDS 45.0%
! ATAAATGTCAGCTGGTGGTG+AGG - Chr1:93672419-93672438 None:intergenic 45.0%
! CTTTTGTGGGATGGAACGAA+GGG + Chr1:93674288-93674307 MsG0180005587.01.T01:CDS 45.0%
! GATCCACCATTAGTGGACAT+CGG - Chr1:93673245-93673264 None:intergenic 45.0%
! GCAGATGCTGTTGTTTATGG+AGG + Chr1:93671813-93671832 MsG0180005587.01.T01:CDS 45.0%
! GGTTCGTCTGATGATGACAA+TGG + Chr1:93673185-93673204 MsG0180005587.01.T01:CDS 45.0%
! TGATGATGACAATGGCCTTG+TGG + Chr1:93673193-93673212 MsG0180005587.01.T01:CDS 45.0%
! TGTGTTGGCAGAGGATTGAT+GGG + Chr1:93673404-93673423 MsG0180005587.01.T01:intron 45.0%
!! AAAGTATCGTGTGTTGGCAG+AGG + Chr1:93673395-93673414 MsG0180005587.01.T01:intron 45.0%
!! TTATGGCATATTTTGGGCCG+AGG + Chr1:93674615-93674634 MsG0180005587.01.T01:CDS 45.0%
!!! AGAGCCAACCATTTTTTGGC+AGG - Chr1:93672810-93672829 None:intergenic 45.0%
!!! GAGCCAACCATTTTTTGGCA+GGG - Chr1:93672809-93672828 None:intergenic 45.0%
AAGACTCTTACTCGTGCTCG+AGG - Chr1:93673753-93673772 None:intergenic 50.0%
ACTGGCTGAGGAATTGGAGA+CGG - Chr1:93672891-93672910 None:intergenic 50.0%
AGAGGCAGATCCACCATTAG+TGG - Chr1:93673252-93673271 None:intergenic 50.0%
AGGAGATGATATGCACCCCA+AGG + Chr1:93674364-93674383 MsG0180005587.01.T01:CDS 50.0%
AGGCAGTACCTTGAATGTCC+TGG - Chr1:93673296-93673315 None:intergenic 50.0%
ATCACCCTCTTTCTGTCCTG+AGG - Chr1:93673635-93673654 None:intergenic 50.0%
CAACAAGTGCCTTAGCAGAG+CGG - Chr1:93674098-93674117 None:intergenic 50.0%
CAGATTTCGAGGGATCAGCT+AGG + Chr1:93672925-93672944 MsG0180005587.01.T01:CDS 50.0%
CAGTTCGCCTTTCACCCATA+CGG - Chr1:93673354-93673373 None:intergenic 50.0%
CCCAACCACTAGAAGTTGTC+TGG - Chr1:93672986-93673005 None:intergenic 50.0%
CGTTCCATCCCACAAAAGCA+CGG - Chr1:93674286-93674305 None:intergenic 50.0%
CTCTGCCCCTAGGATATTAC+CGG - Chr1:93672778-93672797 None:intergenic 50.0%
CTGTTCCTTCTTAGGAGGTG+AGG + Chr1:93671976-93671995 MsG0180005587.01.T01:intron 50.0%
GAACTTCTGCCATATTCCGG+TGG + Chr1:93674703-93674722 MsG0180005587.01.T01:CDS 50.0%
TCACCGATGTCCACTAATGG+TGG + Chr1:93673239-93673258 MsG0180005587.01.T01:CDS 50.0%
TGGCCCTGCCAAAAAATGGT+TGG + Chr1:93672803-93672822 MsG0180005587.01.T01:CDS 50.0%
TTCAGCTCTACAACTGGCTG+AGG - Chr1:93672903-93672922 None:intergenic 50.0%
TTGTCAACGCCATGAACACG+AGG - Chr1:93673709-93673728 None:intergenic 50.0%
! GCTTTTGTGGGATGGAACGA+AGG + Chr1:93674287-93674306 MsG0180005587.01.T01:CDS 50.0%
! GTGTGTTGGCAGAGGATTGA+TGG + Chr1:93673403-93673422 MsG0180005587.01.T01:intron 50.0%
AAGTGCCTTAGCAGAGCGGT+AGG - Chr1:93674094-93674113 None:intergenic 55.0%
AGCACGAGTCAAGTTAGGCG+AGG + Chr1:93672192-93672211 MsG0180005587.01.T01:intron 55.0%
ATCCTAGGGGCAGAGGACAA+TGG + Chr1:93672783-93672802 MsG0180005587.01.T01:CDS 55.0%
CCTGGAACCAGTGGAAGTAG+TGG + Chr1:93672855-93672874 MsG0180005587.01.T01:CDS 55.0%
CGCCTTTCACCCATACGGTA+AGG - Chr1:93673349-93673368 None:intergenic 55.0%
CGGTAATATCCTAGGGGCAG+AGG + Chr1:93672776-93672795 MsG0180005587.01.T01:CDS 55.0%
TCCGTGAGGTGACTCAACCT+CGG - Chr1:93674635-93674654 None:intergenic 55.0%
TCGTGCTCGAGGATTGTCTG+AGG - Chr1:93673742-93673761 None:intergenic 55.0%
TCTCTCCTACCGCTCTGCTA+AGG + Chr1:93674086-93674105 MsG0180005587.01.T01:CDS 55.0%
! CGGTACTCGGTGAATCCACA+AGG - Chr1:93673211-93673230 None:intergenic 55.0%
! GCAGGAGCACGAGTCAAGTT+AGG + Chr1:93672187-93672206 MsG0180005587.01.T01:intron 55.0%
! TTGTCTGGAACGATCGCCTG+TGG - Chr1:93672971-93672990 None:intergenic 55.0%
!! CCACTACTTCCACTGGTTCC+AGG - Chr1:93672858-93672877 None:intergenic 55.0%
GCCGAGGTTGAGTCACCTCA+CGG + Chr1:93674631-93674650 MsG0180005587.01.T01:CDS 60.0%
! GAGGCCGTGCTTTTGTGGGA+TGG + Chr1:93674279-93674298 MsG0180005587.01.T01:CDS 60.0%
GGCCATTGTCCTCTGCCCCT+AGG - Chr1:93672788-93672807 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
Chr1 gene 93671619 93674750 93671619 ID=MsG0180005587.01;Name=MsG0180005587.01
Chr1 mRNA 93671619 93674750 93671619 ID=MsG0180005587.01.T01;Parent=MsG0180005587.01;Name=MsG0180005587.01.T01;_AED=0.48;_eAED=0.48;_QI=0|0|0|1|0.71|0.62|8|0|539
Chr1 exon 93671619 93671648 93671619 ID=MsG0180005587.01.T01:exon:10044;Parent=MsG0180005587.01.T01
Chr1 exon 93671748 93671834 93671748 ID=MsG0180005587.01.T01:exon:10045;Parent=MsG0180005587.01.T01
Chr1 exon 93672343 93672446 93672343 ID=MsG0180005587.01.T01:exon:10046;Parent=MsG0180005587.01.T01
Chr1 exon 93672749 93673397 93672749 ID=MsG0180005587.01.T01:exon:10047;Parent=MsG0180005587.01.T01
Chr1 exon 93673493 93673761 93673493 ID=MsG0180005587.01.T01:exon:10048;Parent=MsG0180005587.01.T01
Chr1 exon 93674047 93674155 93674047 ID=MsG0180005587.01.T01:exon:10049;Parent=MsG0180005587.01.T01
Chr1 exon 93674260 93674408 93674260 ID=MsG0180005587.01.T01:exon:10050;Parent=MsG0180005587.01.T01
Chr1 exon 93674528 93674750 93674528 ID=MsG0180005587.01.T01:exon:10051;Parent=MsG0180005587.01.T01
Chr1 CDS 93671619 93671648 93671619 ID=MsG0180005587.01.T01:cds;Parent=MsG0180005587.01.T01
Chr1 CDS 93671748 93671834 93671748 ID=MsG0180005587.01.T01:cds;Parent=MsG0180005587.01.T01
Chr1 CDS 93672343 93672446 93672343 ID=MsG0180005587.01.T01:cds;Parent=MsG0180005587.01.T01
Chr1 CDS 93672749 93673397 93672749 ID=MsG0180005587.01.T01:cds;Parent=MsG0180005587.01.T01
Chr1 CDS 93673493 93673761 93673493 ID=MsG0180005587.01.T01:cds;Parent=MsG0180005587.01.T01
Chr1 CDS 93674047 93674155 93674047 ID=MsG0180005587.01.T01:cds;Parent=MsG0180005587.01.T01
Chr1 CDS 93674260 93674408 93674260 ID=MsG0180005587.01.T01:cds;Parent=MsG0180005587.01.T01
Chr1 CDS 93674528 93674750 93674528 ID=MsG0180005587.01.T01:cds;Parent=MsG0180005587.01.T01
Gene Sequence

>MsG0180005587.01.T01

ATGGGAGATGAGAATTCCAAGAACACCAAGCTCTCATGGTCAAAGAAAATGGTTAGAAAGTTTTTAATTTCAAAAGCAAATGTGAAGATATTCAAGCAGATGCTGTTGTTTATGGAGCATTTTGTAGCTACATGGAATGTAGCTGGAAGATCCCCACCAAGTAATTTGAGTGTAGATGATTGGCTTCATTCCTCACCACCAGCTGACATTTATGTTCTTGGATTTCAAGAGATAGTTCCGTTGAATGCCGGTAATATCCTAGGGGCAGAGGACAATGGCCCTGCCAAAAAATGGTTGGCTCTTATCAGAAAGACATTAAACAATCTTCCTGGAACCAGTGGAAGTAGTGGATGTTATACACCGTCTCCAATTCCTCAGCCAGTTGTAGAGCTGAATGCAGATTTCGAGGGATCAGCTAGGCAGAAGAATTCGTCTTTCTTCCACAGGCGATCGTTCCAGACAACTTCTAGTGGTTGGGGAATGGACAATGATCCTTCACTTGTGCAACCACAAGTTGATCGAAGATACAGCGTTTGCGATCGTGTAATTTTCGGTAACAGGCCTAGTGACTTTGATCCTAGTTTAAGATGGGGTTATAGGCCTAGTGACTATTCAAGGGCAAGTGACTACTCGAGACCAAGTGACTATTCAAGATGGGGTTCGTCTGATGATGACAATGGCCTTGTGGATTCACCGAGTACCGTCTTATATTCACCGATGTCCACTAATGGTGGATCTGCCTCTAATGAAGATGGATATAGCATGCCAGGACATTCAAGGTACTGCCTCGTTGCAAGTAAGCAAATGGTGGGAATCTACCTTACCGTATGGGTGAAAGGCGAACTGAAAGATCATGTTCGAAACATGAAAAGTAATTTATTTTATGATGAAAATGATGGTTGCTTAGGATTGGCTAATATGAGAGTTATTTTGGTTGGATTTTGCAGGGGTCCATCTCAATTAGATGTCTGTGCACGAAACAAGCTTTTGCTTTATTGCAGTCATTTAACCTCAGGACAGAAAGAGGGTGATGAACTAAGAAGAAATTCTGATGTAATGGAGATTCTTAAAAAGACAAGGTTTCCTCGTGTTCATGGCGTTGACAACGAGAAATCTCCTCAGACAATCCTCGAGCACGATCGAATTATATGGCTTGGAGATTTGAATTATCGGATCGCTCTCTCCTACCGCTCTGCTAAGGCACTTGTTGAGATGCAAAATTGGAGAGCATTGTTAGAAAATGATCAATTGAGAATAGAGCAAAAAAGAGGCCGTGCTTTTGTGGGATGGAACGAAGGGAAGATATATTTTCCTCCAACTTACAAGTATTCAACTAATTCAGATCGATACTCAGGAGATGATATGCACCCCAAGGAAAAAAGGAGAACACCTGCTTGGTGTGACCGTATTCTATGGTATGGAGAAGGTCTCCATCAATTGTCTTATGTTCGCGGTGAATCAAGATTTTCAGACCACAGACCTGTTTATGGCATATTTTGGGCCGAGGTTGAGTCACCTCACGGAAAATTGAAGAAAAGTATGAGCTGTTCTCAGTCAAGAATTGAGTTGGAAGAACTTCTGCCATATTCCGGTGGATATACTGAACTAAACTTTTTCTAA
Protein sequence

>MsG0180005587.01.T01

MGDENSKNTKLSWSKKMVRKFLISKANVKIFKQMLLFMEHFVATWNVAGRSPPSNLSVDDWLHSSPPADIYVLGFQEIVPLNAGNILGAEDNGPAKKWLALIRKTLNNLPGTSGSSGCYTPSPIPQPVVELNADFEGSARQKNSSFFHRRSFQTTSSGWGMDNDPSLVQPQVDRRYSVCDRVIFGNRPSDFDPSLRWGYRPSDYSRASDYSRPSDYSRWGSSDDDNGLVDSPSTVLYSPMSTNGGSASNEDGYSMPGHSRYCLVASKQMVGIYLTVWVKGELKDHVRNMKSNLFYDENDGCLGLANMRVILVGFCRGPSQLDVCARNKLLLYCSHLTSGQKEGDELRRNSDVMEILKKTRFPRVHGVDNEKSPQTILEHDRIIWLGDLNYRIALSYRSAKALVEMQNWRALLENDQLRIEQKRGRAFVGWNEGKIYFPPTYKYSTNSDRYSGDDMHPKEKRRTPAWCDRILWYGEGLHQLSYVRGESRFSDHRPVYGIFWAEVESPHGKLKKSMSCSQSRIELEELLPYSGGYTELNFF*