AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0180005649.01

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0180005649.01.T01 MTR_1g105065 95.017 301 15 0 1 301 1 301 0.0 570
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0180005649.01.T01 AT5G19300 65.926 270 88 3 34 301 84 351 5.56e-123 360

Find 103 sgRNAs with CRISPR-Local

Find 347 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CGATGATTCTGTCAAATTTA+TGG 0.138397 1:+94477178 None:intergenic
TCATCGATGTTGCCATTTAT+TGG 0.179774 1:+94481764 None:intergenic
AGTTGATGTTGGCTTATTTA+AGG 0.186095 1:-94479620 MsG0180005649.01.T01:intron
TGAGGAAGATGATAACTTTA+AGG 0.223818 1:-94477265 MsG0180005649.01.T01:CDS
CCATTTATTGGGTTTGGTTC+AGG 0.241598 1:+94481776 None:intergenic
GCCAACCGCAATTTGGATTA+TGG 0.253118 1:-94478627 MsG0180005649.01.T01:intron
TTCTTCCGGGTTCAAGTATT+TGG 0.255682 1:+94478670 None:intergenic
CGCAATAATCACATATATAA+TGG 0.264388 1:+94477230 None:intergenic
CATCGATGTTGCCATTTATT+GGG 0.278770 1:+94481765 None:intergenic
CATGGGCGCCAACCGCAATT+TGG 0.285952 1:-94478634 MsG0180005649.01.T01:CDS
TAGGGAAGAAGGAGCATATT+GGG 0.306398 1:-94478274 MsG0180005649.01.T01:CDS
CCTGAACCAAACCCAATAAA+TGG 0.310870 1:-94481776 MsG0180005649.01.T01:CDS
CCCACTCATGTTTGCGCAAA+TGG 0.317819 1:+94481039 None:intergenic
GGCGACAGTAACTCTTCTTC+CGG 0.318602 1:+94478656 None:intergenic
AATAAAAGTAATACAGATAA+AGG 0.356965 1:-94481324 MsG0180005649.01.T01:CDS
TTATTCCGCACCGGATAATT+CGG 0.364342 1:-94481301 MsG0180005649.01.T01:CDS
AATTCTAAATAGTGTAGGTT+TGG 0.371794 1:+94477067 None:intergenic
AGACATTTATTGATTGCCTT+TGG 0.377473 1:-94477315 MsG0180005649.01.T01:CDS
TGCTCCTTCTTCCCTAGGCT+TGG 0.378296 1:+94478281 None:intergenic
CTTTGGCGGATTGGCTGGTT+TGG 0.380876 1:-94477298 MsG0180005649.01.T01:CDS
CTTCCCCATGTTTACAGAGT+TGG 0.382586 1:+94481838 None:intergenic
GCATAACAGCTTAAGATTTG+TGG 0.397795 1:-94481193 MsG0180005649.01.T01:intron
ATGTTGCCATTTATTGGGTT+TGG 0.399709 1:+94481770 None:intergenic
AGCTTGAAATACCATCCTTC+AGG 0.412173 1:-94478016 MsG0180005649.01.T01:intron
CAATATGCTCCTTCTTCCCT+AGG 0.415928 1:+94478276 None:intergenic
GCGACAGTAACTCTTCTTCC+GGG 0.421324 1:+94478657 None:intergenic
TTGAGACACCTCAGTATTTG+AGG 0.427188 1:-94481233 MsG0180005649.01.T01:CDS
CTAGGGAAGAAGGAGCATAT+TGG 0.429341 1:-94478275 MsG0180005649.01.T01:CDS
ATTGCCTTTGGCGGATTGGC+TGG 0.434730 1:-94477303 MsG0180005649.01.T01:CDS
ACATGAGTGGGGTCCGTATC+GGG 0.438663 1:-94481027 MsG0180005649.01.T01:CDS
AAATTTATGGAATCTCTGAT+TGG 0.448420 1:+94477191 None:intergenic
ACAGTGCATGTGCATCAAAC+AGG 0.453481 1:+94477125 None:intergenic
TATTGGGTTTGGTTCAGGTT+CGG 0.453688 1:+94481781 None:intergenic
CAAATTGCGGTTGGCGCCCA+TGG 0.453787 1:+94478635 None:intergenic
TTCGGATGATGAAAGTAGTT+CGG 0.454347 1:-94481283 MsG0180005649.01.T01:CDS
ATTGATTGCCTTTGGCGGAT+TGG 0.456827 1:-94477307 MsG0180005649.01.T01:CDS
AATCTTAAGCTGTTATGCAT+TGG 0.463655 1:+94481198 None:intergenic
CAACTCTTGAACTCGCTACT+CGG 0.468723 1:-94481637 MsG0180005649.01.T01:CDS
CATTTATTGATTGCCTTTGG+CGG 0.469674 1:-94477312 MsG0180005649.01.T01:CDS
CAATACCAACTCTGTAAACA+TGG 0.475788 1:-94481843 None:intergenic
CATTAGCAACCTCATTGATT+CGG 0.476477 1:+94481464 None:intergenic
CTTTCATCATCCGAATTATC+CGG 0.480182 1:+94481291 None:intergenic
AGTTGGAACGTTGTCAATGA+TGG 0.483106 1:+94481655 None:intergenic
TAAATAGTGTAGGTTTGGAT+TGG 0.486492 1:+94477072 None:intergenic
GAATGTGTTGCAACAGAGAA+AGG 0.491352 1:+94477147 None:intergenic
ACCATAATCCAAATTGCGGT+TGG 0.503863 1:+94478626 None:intergenic
AACATGAGTGGGGTCCGTAT+CGG 0.504197 1:-94481028 MsG0180005649.01.T01:CDS
CATAAATTTGACAGAATCAT+CGG 0.505960 1:-94477177 MsG0180005649.01.T01:CDS
AAGAAAGACATTCAAACTCC+GGG 0.512731 1:-94479651 MsG0180005649.01.T01:CDS
TCATCCAAGCCTAGGGAAGA+AGG 0.513329 1:-94478285 MsG0180005649.01.T01:CDS
AACATCAACTAGCGTTGCCC+CGG 0.521910 1:+94479633 None:intergenic
GAGGTGTCTCAAGGTACTGC+AGG 0.529237 1:+94481244 None:intergenic
AAAGAAAGACATTCAAACTC+CGG 0.529826 1:-94479652 MsG0180005649.01.T01:CDS
GTGTAGGTTTGGATTGGCAG+TGG 0.529952 1:+94477078 None:intergenic
GGGGCAACGCTAGTTGATGT+TGG 0.530539 1:-94479631 MsG0180005649.01.T01:CDS
TTGTCTCATCATCCAAGCCT+AGG 0.537203 1:-94478293 MsG0180005649.01.T01:CDS
CCATTTGCGCAAACATGAGT+GGG 0.538873 1:-94481039 MsG0180005649.01.T01:CDS
AACTCTTGAACTCGCTACTC+GGG 0.543550 1:-94481636 MsG0180005649.01.T01:intron
GCAAATGGTGTGGAGCATCA+AGG 0.551811 1:+94481054 None:intergenic
GATTACCATAATCCAAATTG+CGG 0.555577 1:+94478622 None:intergenic
AAGAAGAGTTACTGTCGCCA+TGG 0.560843 1:-94478652 MsG0180005649.01.T01:CDS
AACGTTGTCAATGATGGAAG+CGG 0.563328 1:+94481661 None:intergenic
AAAGACCTACCTTCCCGATA+CGG 0.564821 1:+94481014 None:intergenic
ACTTGAATTCTAAATAGTGT+AGG 0.567707 1:+94477062 None:intergenic
GGTGGCTATGATTGTATAGT+CGG 0.570409 1:-94478074 MsG0180005649.01.T01:CDS
CAAATGGTGTGGAGCATCAA+GGG 0.574406 1:+94481055 None:intergenic
CATTATATATGTGATTATTG+CGG 0.580052 1:-94477229 MsG0180005649.01.T01:CDS
ACGTTGTCAATGATGGAAGC+GGG 0.580301 1:+94481662 None:intergenic
AGAAGAGTTACTGTCGCCAT+GGG 0.580848 1:-94478651 MsG0180005649.01.T01:CDS
TCTCTGATTGGCAGTAATCG+AGG 0.585931 1:+94477203 None:intergenic
GGGAACAGCTATGCTGACAG+TGG 0.586260 1:+94481682 None:intergenic
CTCTGATTGGCAGTAATCGA+GGG 0.586663 1:+94477204 None:intergenic
GAAGAAGCAGCGGCTGACAA+CGG 0.589419 1:-94481813 MsG0180005649.01.T01:CDS
CGAGTAGCGAGTTCAAGAGT+TGG 0.592023 1:+94481638 None:intergenic
AATACCAACTCTGTAAACAT+GGG 0.596123 1:-94481842 None:intergenic
TGGTTTGGAAGAGAGTATTG+AGG 0.599758 1:-94477283 MsG0180005649.01.T01:CDS
AGATAAAGGTTATTCCGCAC+CGG 0.600115 1:-94481310 MsG0180005649.01.T01:CDS
TGTCTCATCATCCAAGCCTA+GGG 0.600351 1:-94478292 MsG0180005649.01.T01:CDS
ACCATTTGCGCAAACATGAG+TGG 0.600994 1:-94481040 MsG0180005649.01.T01:CDS
TCAAATACTGAGGTGTCTCA+AGG 0.601277 1:+94481235 None:intergenic
AAACATGAGCACCTGAAGGA+TGG 0.601594 1:+94478005 None:intergenic
GACACCTCAGTATTTGAGGA+AGG 0.603915 1:-94481229 MsG0180005649.01.T01:CDS
ATTTAATGAATGTACATACA+AGG 0.623297 1:-94478214 MsG0180005649.01.T01:intron
TCATGTTTGCGCAAATGGTG+TGG 0.628666 1:+94481044 None:intergenic
GGAACAGCTATGCTGACAGT+GGG 0.628924 1:+94481683 None:intergenic
GATGATGAGACAACCTCGCG+TGG 0.636166 1:+94478303 None:intergenic
CAAACCAGCCAATCCGCCAA+AGG 0.636167 1:+94477299 None:intergenic
TCATCTAGATTTACCACGCG+AGG 0.636923 1:-94478316 MsG0180005649.01.T01:intron
AAATGGTGTGGAGCATCAAG+GGG 0.640817 1:+94481056 None:intergenic
AGGGAAGAAGGAGCATATTG+GGG 0.647186 1:-94478273 MsG0180005649.01.T01:CDS
ATCATCCGAATTATCCGGTG+CGG 0.653728 1:+94481296 None:intergenic
GAGTGGGGTCCGTATCGGGA+AGG 0.653942 1:-94481023 MsG0180005649.01.T01:intron
ATAGTCGGTACCTCTGAGCA+TGG 0.660543 1:-94478059 MsG0180005649.01.T01:CDS
TGGTGTGGAGCATCAAGGGG+TGG 0.663049 1:+94481059 None:intergenic
ATACCAACTCTGTAAACATG+GGG 0.670763 1:-94481841 None:intergenic
TGGGGAAGAAGAAGAAGCAG+CGG 0.683363 1:-94481823 MsG0180005649.01.T01:CDS
TAAGAAGAACAAATCAAACA+AGG 0.684805 1:-94481711 MsG0180005649.01.T01:CDS
AGAGCCTTCCTCAAATACTG+AGG 0.688667 1:+94481225 None:intergenic
GTTGACCAAATACTTGAACC+CGG 0.705221 1:-94478675 MsG0180005649.01.T01:CDS
ATTGATTCGGAAAATAGTCG+CGG 0.716272 1:+94481477 None:intergenic
AATAATCTGACCATGCTCAG+AGG 0.716636 1:+94478049 None:intergenic
AGAAAGACATTCAAACTCCG+GGG 0.724344 1:-94479650 MsG0180005649.01.T01:CDS
CATTTGCGCAAACATGAGTG+GGG 0.732835 1:-94481038 MsG0180005649.01.T01:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAGAAAATAAAACTTAAAA+AGG + Chr1:94481439-94481458 None:intergenic 10.0%
!! AAGTAAAAAAAGTAAAAAAT+TGG + Chr1:94479343-94479362 None:intergenic 10.0%
!! AAATACAAAGAGAATTTAAA+GGG + Chr1:94479366-94479385 None:intergenic 15.0%
!! AATAAAAGTAATACAGATAA+AGG - Chr1:94477582-94477601 MsG0180005649.01.T01:intron 15.0%
!! ATTATTATTGTTAAATTGCT+TGG - Chr1:94480942-94480961 MsG0180005649.01.T01:intron 15.0%
!! TAATAATGTTACTATTAACT+AGG - Chr1:94480153-94480172 MsG0180005649.01.T01:intron 15.0%
!! TTATTATTGTTAAATTGCTT+GGG - Chr1:94480943-94480962 MsG0180005649.01.T01:intron 15.0%
!!! AATGAAAGTAATTTTGAAAT+GGG + Chr1:94477298-94477317 None:intergenic 15.0%
!!! TAAAATTAACGTTTTTGTTA+TGG + Chr1:94477322-94477341 None:intergenic 15.0%
!!! TAATTTATAATTTTATGCTC+AGG - Chr1:94478058-94478077 MsG0180005649.01.T01:CDS 15.0%
!!! TATATTCTATTTTTCTTGTT+AGG - Chr1:94478212-94478231 MsG0180005649.01.T01:intron 15.0%
!! AAAAATGTAAAGGAAATTCA+TGG - Chr1:94477951-94477970 MsG0180005649.01.T01:intron 20.0%
!! AAAGAAAACTTCAAAATCAT+AGG + Chr1:94480449-94480468 None:intergenic 20.0%
!! AAATTATCAGTACTAATCAT+TGG + Chr1:94478044-94478063 None:intergenic 20.0%
!! AACATTATTAGAACAAAATC+TGG + Chr1:94480143-94480162 None:intergenic 20.0%
!! ATAGATTAATAGGAAAACAA+TGG + Chr1:94481048-94481067 None:intergenic 20.0%
!! ATATATTTCAAAACTTTCCA+TGG + Chr1:94478252-94478271 None:intergenic 20.0%
!! ATATTAGAATATTCTTGAAC+AGG - Chr1:94479801-94479820 MsG0180005649.01.T01:intron 20.0%
!! ATCTAAATCACAATATAACA+AGG + Chr1:94478134-94478153 None:intergenic 20.0%
!! ATTTAATGAATGTACATACA+AGG - Chr1:94480692-94480711 MsG0180005649.01.T01:intron 20.0%
!! ATTTATAGATTATTAGAGTG+TGG - Chr1:94479624-94479643 MsG0180005649.01.T01:CDS 20.0%
!! CAAATTAAAATCGAAGAAAA+GGG + Chr1:94479575-94479594 None:intergenic 20.0%
!! CATTATATATGTGATTATTG+CGG - Chr1:94481677-94481696 MsG0180005649.01.T01:CDS 20.0%
!! GAAATACAAAGAGAATTTAA+AGG + Chr1:94479367-94479386 None:intergenic 20.0%
!! TCAAATTAAAATCGAAGAAA+AGG + Chr1:94479576-94479595 None:intergenic 20.0%
!! TCTAAATCACAATATAACAA+GGG + Chr1:94478133-94478152 None:intergenic 20.0%
!! TGAACAAGTTTATTAATTCT+GGG - Chr1:94481004-94481023 MsG0180005649.01.T01:intron 20.0%
!! TTATTTATGTGTGTATGAAT+AGG - Chr1:94477545-94477564 MsG0180005649.01.T01:intron 20.0%
!! TTGAACAAGTTTATTAATTC+TGG - Chr1:94481003-94481022 MsG0180005649.01.T01:intron 20.0%
!!! AAATCTGGAATAAATTCATT+TGG - Chr1:94478686-94478705 MsG0180005649.01.T01:CDS 20.0%
!!! ATGATTTTGAAGTTTTCTTT+GGG - Chr1:94480449-94480468 MsG0180005649.01.T01:intron 20.0%
!!! ATGGAAAGTTTTGAAATATA+TGG - Chr1:94478251-94478270 MsG0180005649.01.T01:CDS 20.0%
!!! CAATGAAAGTAATTTTGAAA+TGG + Chr1:94477299-94477318 None:intergenic 20.0%
!!! TATGATTTTGAAGTTTTCTT+TGG - Chr1:94480448-94480467 MsG0180005649.01.T01:intron 20.0%
! AAAAAAACAGAGAGAAAATG+AGG + Chr1:94481368-94481387 None:intergenic 25.0%
! AAAAAATGCCAAATTGAAAG+AGG + Chr1:94480393-94480412 None:intergenic 25.0%
! AAATGAGTTTATGGAAACTT+TGG - Chr1:94478895-94478914 MsG0180005649.01.T01:intron 25.0%
! AAATTCATTTGGTTGAAAGT+TGG - Chr1:94478697-94478716 MsG0180005649.01.T01:intron 25.0%
! AAATTTATGGAATCTCTGAT+TGG + Chr1:94481718-94481737 None:intergenic 25.0%
! AACAGTAAATGAAACTATAG+TGG - Chr1:94479848-94479867 MsG0180005649.01.T01:intron 25.0%
! AAGGAAAATGTAAGAGAAAT+AGG + Chr1:94479552-94479571 None:intergenic 25.0%
! AAGGGAAATGAAAAAGAAAA+AGG + Chr1:94479389-94479408 None:intergenic 25.0%
! AATAAATTAATCATCGCAAC+TGG + Chr1:94478933-94478952 None:intergenic 25.0%
! AATAGGCTATGGATATTAAA+AGG + Chr1:94480749-94480768 None:intergenic 25.0%
! ACATGAGATTAAAGTTATCA+GGG - Chr1:94481163-94481182 MsG0180005649.01.T01:intron 25.0%
! AGAAAGGAAAAAGATTAAAC+CGG + Chr1:94479041-94479060 None:intergenic 25.0%
! AGAATATACGAAAACAATAC+TGG + Chr1:94478200-94478219 None:intergenic 25.0%
! AGAATTTCTAATTTCTGTAG+TGG - Chr1:94477925-94477944 MsG0180005649.01.T01:intron 25.0%
! ATAAAACTACAATGCTATAG+AGG - Chr1:94478389-94478408 MsG0180005649.01.T01:intron 25.0%
! ATACATTTCACAAGATTTCT+TGG - Chr1:94479316-94479335 MsG0180005649.01.T01:intron 25.0%
! ATATTGTCATTGTGTTATCA+AGG + Chr1:94480477-94480496 None:intergenic 25.0%
! ATCAGTTGCATTATAATGTT+TGG + Chr1:94481403-94481422 None:intergenic 25.0%
! CATAAATTTGACAGAATCAT+CGG - Chr1:94481729-94481748 MsG0180005649.01.T01:CDS 25.0%
! CATGTAAAAGATATGAAATC+TGG - Chr1:94478671-94478690 MsG0180005649.01.T01:CDS 25.0%
! CATTGCAATAATAACTTCTT+AGG - Chr1:94479221-94479240 MsG0180005649.01.T01:intron 25.0%
! CGCAATAATCACATATATAA+TGG + Chr1:94481679-94481698 None:intergenic 25.0%
! CTAAATCACAATATAACAAG+GGG + Chr1:94478132-94478151 None:intergenic 25.0%
! GGAAGAATGATTTAAATTCT+GGG - Chr1:94477972-94477991 MsG0180005649.01.T01:intron 25.0%
! GTTTAGTATGTGTTTAATGT+TGG - Chr1:94477793-94477812 MsG0180005649.01.T01:intron 25.0%
! TAAGAAGAACAAATCAAACA+AGG - Chr1:94477195-94477214 MsG0180005649.01.T01:CDS 25.0%
! TACATTTCACAAGATTTCTT+GGG - Chr1:94479317-94479336 MsG0180005649.01.T01:intron 25.0%
! TGACAAGTAAACAAAAGAAA+GGG + Chr1:94480803-94480822 None:intergenic 25.0%
! TGGAAGAATGATTTAAATTC+TGG - Chr1:94477971-94477990 MsG0180005649.01.T01:intron 25.0%
! TTGACAAGTAAACAAAAGAA+AGG + Chr1:94480804-94480823 None:intergenic 25.0%
!! AAATATATATGTGATGATGC+AGG - Chr1:94481519-94481538 MsG0180005649.01.T01:intron 25.0%
!! AATTTTCATGTCAGTTTGAT+AGG + Chr1:94478364-94478383 None:intergenic 25.0%
!! TTAATGTTGGTTGTTTGTAT+TGG - Chr1:94477806-94477825 MsG0180005649.01.T01:intron 25.0%
!!! ATGGAAAGAAGTTATTTTGA+AGG - Chr1:94478819-94478838 MsG0180005649.01.T01:intron 25.0%
!!! CCAGCAATTTTTTTTAAACT+CGG + Chr1:94480053-94480072 None:intergenic 25.0%
!!! GCAGGTGTTTTTATTTAAAT+TGG - Chr1:94481537-94481556 MsG0180005649.01.T01:intron 25.0%
!!! TCTATAGCATTGTAGTTTTA+TGG + Chr1:94478390-94478409 None:intergenic 25.0%
!!! TGGAAAGAAGTTATTTTGAA+GGG - Chr1:94478820-94478839 MsG0180005649.01.T01:intron 25.0%
!!! TTTTTTTTAAACTCGGTATC+TGG + Chr1:94480046-94480065 None:intergenic 25.0%
AAAGAAAGACATTCAAACTC+CGG - Chr1:94479254-94479273 MsG0180005649.01.T01:intron 30.0%
AATAGTAGCATATAGAAAGC+GGG - Chr1:94480097-94480116 MsG0180005649.01.T01:intron 30.0%
AATCTTAAGCTGTTATGCAT+TGG + Chr1:94477711-94477730 None:intergenic 30.0%
AATGAACAGTGTTATCGAAT+CGG - Chr1:94478421-94478440 MsG0180005649.01.T01:intron 30.0%
ACTAGAAAGCAGAAATTCTT+GGG - Chr1:94479888-94479907 MsG0180005649.01.T01:intron 30.0%
ACTATGCAACTGAATAACTA+TGG - Chr1:94479743-94479762 MsG0180005649.01.T01:intron 30.0%
AGAATATTCTTGAACAGGTT+AGG - Chr1:94479806-94479825 MsG0180005649.01.T01:intron 30.0%
AGGTTGTCATTGAAAAAACA+AGG + Chr1:94479408-94479427 None:intergenic 30.0%
ATAATAAGATGTCCTTGAGA+AGG + Chr1:94479428-94479447 None:intergenic 30.0%
ATGATAGGAAAAACACTTGT+GGG + Chr1:94481293-94481312 None:intergenic 30.0%
ATTTGGTTGAAAGTTGGAAT+CGG - Chr1:94478703-94478722 MsG0180005649.01.T01:intron 30.0%
CAATAGTAGCATATAGAAAG+CGG - Chr1:94480096-94480115 MsG0180005649.01.T01:intron 30.0%
CAATGTGTGGTTCAAATTAA+CGG + Chr1:94478305-94478324 None:intergenic 30.0%
CACATGAGATTAAAGTTATC+AGG - Chr1:94481162-94481181 MsG0180005649.01.T01:intron 30.0%
CATGAGATTAAAGTTATCAG+GGG - Chr1:94481164-94481183 MsG0180005649.01.T01:intron 30.0%
CCATAAACTCATTTAGAGAA+AGG + Chr1:94478889-94478908 None:intergenic 30.0%
CCGAGTTTAAAAAAAATTGC+TGG - Chr1:94480050-94480069 MsG0180005649.01.T01:intron 30.0%
CCTTTCTCTAAATGAGTTTA+TGG - Chr1:94478886-94478905 MsG0180005649.01.T01:intron 30.0%
CGATGATTCTGTCAAATTTA+TGG + Chr1:94481731-94481750 None:intergenic 30.0%
CTTAATAACGAAATCATGAC+TGG - Chr1:94478735-94478754 MsG0180005649.01.T01:intron 30.0%
GAAAGGAAAAAGATTAAACC+GGG + Chr1:94479040-94479059 None:intergenic 30.0%
GATTACCATAATCCAAATTG+CGG + Chr1:94480287-94480306 None:intergenic 30.0%
GATTTAGATCTAATCGATGA+TGG - Chr1:94478145-94478164 MsG0180005649.01.T01:intron 30.0%
GGTGAGAAAATCAAATCAAA+TGG - Chr1:94478800-94478819 MsG0180005649.01.T01:intron 30.0%
GGTTGTCATTGAAAAAACAA+GGG + Chr1:94479407-94479426 None:intergenic 30.0%
GTATAGTGAATCAGATCATA+TGG + Chr1:94480192-94480211 None:intergenic 30.0%
TAAATAGTGTAGGTTTGGAT+TGG + Chr1:94481837-94481856 None:intergenic 30.0%
TATAATGCAACTGATGCATA+GGG - Chr1:94481408-94481427 MsG0180005649.01.T01:intron 30.0%
TATGATAGGAAAAACACTTG+TGG + Chr1:94481294-94481313 None:intergenic 30.0%
TATTGCAATGTATCAAAACC+TGG + Chr1:94479211-94479230 None:intergenic 30.0%
TGAATATTGATGCCAAACTA+CGG - Chr1:94481121-94481140 MsG0180005649.01.T01:intron 30.0%
TGAGGAAGATGATAACTTTA+AGG - Chr1:94481641-94481660 MsG0180005649.01.T01:CDS 30.0%
TGTTTGTATTGGAATTTGCA+GGG - Chr1:94477817-94477836 MsG0180005649.01.T01:intron 30.0%
TTAAAATCGAAGAAAAGGGA+AGG + Chr1:94479571-94479590 None:intergenic 30.0%
TTATAATGCAACTGATGCAT+AGG - Chr1:94481407-94481426 MsG0180005649.01.T01:intron 30.0%
TTGTTTGTATTGGAATTTGC+AGG - Chr1:94477816-94477835 MsG0180005649.01.T01:intron 30.0%
TTTAACTGGAAGTTCAATGA+GGG - Chr1:94479501-94479520 MsG0180005649.01.T01:intron 30.0%
TTTAATCTCATGTGAACTCT+TGG + Chr1:94481156-94481175 None:intergenic 30.0%
TTTATGTGTGTATGAATAGG+TGG - Chr1:94477548-94477567 MsG0180005649.01.T01:intron 30.0%
! AGACATTTATTGATTGCCTT+TGG - Chr1:94481591-94481610 MsG0180005649.01.T01:intron 30.0%
! AGTTTATTAATTCTGGGAGA+TGG - Chr1:94481010-94481029 MsG0180005649.01.T01:intron 30.0%
!! AACTTTGCTCTAGCTTTAAA+TGG - Chr1:94479966-94479985 MsG0180005649.01.T01:intron 30.0%
!! ACTTTGCTCTAGCTTTAAAT+GGG - Chr1:94479967-94479986 MsG0180005649.01.T01:intron 30.0%
!! AGCATGCTTTTCTTTTTCAT+TGG - Chr1:94480355-94480374 MsG0180005649.01.T01:intron 30.0%
!! AGTTGATGTTGGCTTATTTA+AGG - Chr1:94479286-94479305 MsG0180005649.01.T01:intron 30.0%
!! GTAGTGGATGAAAAATGTAA+AGG - Chr1:94477941-94477960 MsG0180005649.01.T01:intron 30.0%
!! TTTTAACTGGAAGTTCAATG+AGG - Chr1:94479500-94479519 MsG0180005649.01.T01:intron 30.0%
!!! AAAGAAGTTATTTTGAAGGG+AGG - Chr1:94478823-94478842 MsG0180005649.01.T01:intron 30.0%
!!! TTTGGATATTGGCTTTTAAC+TGG - Chr1:94479487-94479506 MsG0180005649.01.T01:intron 30.0%
AAAACAGAGAGAAAATGAGG+AGG + Chr1:94481365-94481384 None:intergenic 35.0%
AAACAGAGAGAAAATGAGGA+GGG + Chr1:94481364-94481383 None:intergenic 35.0%
AACAGCTTAAGATTTGTGGT+TGG - Chr1:94477717-94477736 MsG0180005649.01.T01:intron 35.0%
AAGAAAGACATTCAAACTCC+GGG - Chr1:94479255-94479274 MsG0180005649.01.T01:intron 35.0%
ACTTCTCCTCTAGTATTCTT+AGG + Chr1:94478853-94478872 None:intergenic 35.0%
AGCATAAATTCATGTAGCCA+AGG + Chr1:94480552-94480571 None:intergenic 35.0%
AGTACATGATATTGAGCCAT+TGG + Chr1:94481190-94481209 None:intergenic 35.0%
ATACGCTTCCTCTTTCAATT+TGG - Chr1:94480382-94480401 MsG0180005649.01.T01:intron 35.0%
ATTGCTGGAAACAGAAATTC+AGG - Chr1:94480065-94480084 MsG0180005649.01.T01:intron 35.0%
ATTGGCAAATGTTTAGCTGA+TGG + Chr1:94478026-94478045 None:intergenic 35.0%
CACTAGAAAGCAGAAATTCT+TGG - Chr1:94479887-94479906 MsG0180005649.01.T01:intron 35.0%
CCAATATCCAAACAACTACA+TGG + Chr1:94479479-94479498 None:intergenic 35.0%
CCATGTAGTTGTTTGGATAT+TGG - Chr1:94479476-94479495 MsG0180005649.01.T01:intron 35.0%
CTTTCATCATCCGAATTATC+CGG + Chr1:94477618-94477637 None:intergenic 35.0%
GCATAACAGCTTAAGATTTG+TGG - Chr1:94477713-94477732 MsG0180005649.01.T01:intron 35.0%
GGAAAACCTAAGAATACTAG+AGG - Chr1:94478844-94478863 MsG0180005649.01.T01:intron 35.0%
GTTAGCAAGCTCATTATGAT+AGG + Chr1:94481308-94481327 None:intergenic 35.0%
GTTTACTTGTCAACGTTACA+GGG - Chr1:94480811-94480830 MsG0180005649.01.T01:intron 35.0%
GTTTGTATTGGAATTTGCAG+GGG - Chr1:94477818-94477837 MsG0180005649.01.T01:intron 35.0%
TAACCAACACAATGAACACT+TGG + Chr1:94479071-94479090 None:intergenic 35.0%
TACAGTGGTCGATGAATAAT+AGG + Chr1:94480766-94480785 None:intergenic 35.0%
TGAGAACAGAAAATTCACAC+TGG + Chr1:94481244-94481263 None:intergenic 35.0%
TGTTTACTTGTCAACGTTAC+AGG - Chr1:94480810-94480829 MsG0180005649.01.T01:intron 35.0%
TTCATTAGCACTGTTGTCTA+TGG + Chr1:94478600-94478619 None:intergenic 35.0%
TTCATTCCAGAATTTCTCCT+TGG - Chr1:94480532-94480551 MsG0180005649.01.T01:intron 35.0%
TTCGGATGATGAAAGTAGTT+CGG - Chr1:94477623-94477642 MsG0180005649.01.T01:intron 35.0%
TTGGCAAATGTTTAGCTGAT+GGG + Chr1:94478025-94478044 None:intergenic 35.0%
TTTCAATGACAACCTTCTCA+AGG - Chr1:94479413-94479432 MsG0180005649.01.T01:intron 35.0%
! ATGAGTGGAAAGTATAGCAT+TGG - Chr1:94481265-94481284 MsG0180005649.01.T01:CDS 35.0%
! ATGTTGCCATTTATTGGGTT+TGG + Chr1:94477139-94477158 None:intergenic 35.0%
! ATTTTCTGTTCTCACATGAG+TGG - Chr1:94481250-94481269 MsG0180005649.01.T01:CDS 35.0%
! CATCGATGTTGCCATTTATT+GGG + Chr1:94477144-94477163 None:intergenic 35.0%
! CATTAGCAACCTCATTGATT+CGG + Chr1:94477445-94477464 None:intergenic 35.0%
! CATTTATTGATTGCCTTTGG+CGG - Chr1:94481594-94481613 MsG0180005649.01.T01:intron 35.0%
! GACTATTTTCCGAATCAATG+AGG - Chr1:94477433-94477452 MsG0180005649.01.T01:intron 35.0%
! TCATCGATGTTGCCATTTAT+TGG + Chr1:94477145-94477164 None:intergenic 35.0%
! TGAGTGGAAAGTATAGCATT+GGG - Chr1:94481266-94481285 MsG0180005649.01.T01:CDS 35.0%
!! AACACTTGGTGTGTTAAGAA+AGG + Chr1:94479057-94479076 None:intergenic 35.0%
!! ATTGATTCGGAAAATAGTCG+CGG + Chr1:94477432-94477451 None:intergenic 35.0%
!!! AATCGGTGGCAGTTTTTTTT+TGG - Chr1:94478454-94478473 MsG0180005649.01.T01:intron 35.0%
!!! ATCGGTGGCAGTTTTTTTTT+GGG - Chr1:94478455-94478474 MsG0180005649.01.T01:intron 35.0%
!!! GTGTTTTGAGTTTCACTTAC+TGG - Chr1:94481470-94481489 MsG0180005649.01.T01:intron 35.0%
!!! GTTGTCGACTTTTATTGTGT+TGG - Chr1:94478996-94479015 MsG0180005649.01.T01:intron 35.0%
!!! TTTTGATTTCCCTTTTCAGC+TGG - Chr1:94477388-94477407 MsG0180005649.01.T01:intron 35.0%
AAAAGAAAGGGTTCGTGAGT+AGG + Chr1:94480791-94480810 None:intergenic 40.0%
AACGGACATTAAACACTCCA+TGG + Chr1:94478287-94478306 None:intergenic 40.0%
AATAATCTGACCATGCTCAG+AGG + Chr1:94480860-94480879 None:intergenic 40.0%
ACACCAAGTGTTCATTGTGT+TGG - Chr1:94479065-94479084 MsG0180005649.01.T01:intron 40.0%
ACCATAATCCAAATTGCGGT+TGG + Chr1:94480283-94480302 None:intergenic 40.0%
AGAAAATGAGGAGGGAAAAG+GGG + Chr1:94481356-94481375 None:intergenic 40.0%
AGAAAGACATTCAAACTCCG+GGG - Chr1:94479256-94479275 MsG0180005649.01.T01:intron 40.0%
AGAGAAAATGAGGAGGGAAA+AGG + Chr1:94481358-94481377 None:intergenic 40.0%
AGATAAAGGTTATTCCGCAC+CGG - Chr1:94477596-94477615 MsG0180005649.01.T01:intron 40.0%
AGCTAGAGCAAAGTTCCATA+TGG + Chr1:94479961-94479980 None:intergenic 40.0%
AGCTTGAAATACCATCCTTC+AGG - Chr1:94480890-94480909 MsG0180005649.01.T01:intron 40.0%
AGGAAAAAGATTAAACCGGG+TGG + Chr1:94479037-94479056 None:intergenic 40.0%
AGTTGGAACGTTGTCAATGA+TGG + Chr1:94477254-94477273 None:intergenic 40.0%
ATCTGTGTGTGTTGGAAGTA+AGG - Chr1:94478773-94478792 MsG0180005649.01.T01:intron 40.0%
ATGTAGCCAAGGAGAAATTC+TGG + Chr1:94480541-94480560 None:intergenic 40.0%
ATTAGCACTGTTGTCTATGG+CGG + Chr1:94478597-94478616 None:intergenic 40.0%
CCTGAACCAAACCCAATAAA+TGG - Chr1:94477130-94477149 MsG0180005649.01.T01:CDS 40.0%
CTAAGCTTATCTGTGTGTGT+TGG - Chr1:94478765-94478784 MsG0180005649.01.T01:intron 40.0%
GAACAGAAAATTCACACTGG+AGG + Chr1:94481241-94481260 None:intergenic 40.0%
GAATGTGTTGCAACAGAGAA+AGG + Chr1:94481762-94481781 None:intergenic 40.0%
GAATGTTCGACAGTGAGTAT+AGG - Chr1:94478617-94478636 MsG0180005649.01.T01:intron 40.0%
GAGAAAATGAGGAGGGAAAA+GGG + Chr1:94481357-94481376 None:intergenic 40.0%
GGTCGATGAATAATAGGCTA+TGG + Chr1:94480760-94480779 None:intergenic 40.0%
GGTGGCTATGATTGTATAGT+CGG - Chr1:94480832-94480851 MsG0180005649.01.T01:intron 40.0%
GGTTCATAGATCGACTAATC+CGG + Chr1:94480025-94480044 None:intergenic 40.0%
GTTAAAACATGAGCACCTGA+AGG + Chr1:94480908-94480927 None:intergenic 40.0%
GTTGACCAAATACTTGAACC+CGG - Chr1:94480231-94480250 MsG0180005649.01.T01:intron 40.0%
TGGCAAATGTTTAGCTGATG+GGG + Chr1:94478024-94478043 None:intergenic 40.0%
TTAAAGTTATCAGGGGCCAA+TGG - Chr1:94481171-94481190 MsG0180005649.01.T01:intron 40.0%
TTATTCCGCACCGGATAATT+CGG - Chr1:94477605-94477624 MsG0180005649.01.T01:intron 40.0%
TTCTTCCGGGTTCAAGTATT+TGG + Chr1:94480239-94480258 None:intergenic 40.0%
TTGAGACACCTCAGTATTTG+AGG - Chr1:94477673-94477692 MsG0180005649.01.T01:intron 40.0%
TTTAAGCGTTCTCTCTACGT+TGG - Chr1:94480973-94480992 MsG0180005649.01.T01:intron 40.0%
! AACGTTGTCAATGATGGAAG+CGG + Chr1:94477248-94477267 None:intergenic 40.0%
! ATTTGACTAGCCAGCTGAAA+AGG + Chr1:94477401-94477420 None:intergenic 40.0%
! CCATTTATTGGGTTTGGTTC+AGG + Chr1:94477133-94477152 None:intergenic 40.0%
! TAGGGAAGAAGGAGCATATT+GGG - Chr1:94480632-94480651 MsG0180005649.01.T01:intron 40.0%
! TATTAGTCACCCCAGCTTTT+GGG - Chr1:94478949-94478968 MsG0180005649.01.T01:intron 40.0%
! TATTGGGTTTGGTTCAGGTT+CGG + Chr1:94477128-94477147 None:intergenic 40.0%
! TCAAATACTGAGGTGTCTCA+AGG + Chr1:94477674-94477693 None:intergenic 40.0%
! TTATTAGTCACCCCAGCTTT+TGG - Chr1:94478948-94478967 MsG0180005649.01.T01:intron 40.0%
! TTTGACTAGCCAGCTGAAAA+GGG + Chr1:94477400-94477419 None:intergenic 40.0%
!! ATGAGCTTGCTAACAAGCAA+AGG - Chr1:94481314-94481333 MsG0180005649.01.T01:CDS 40.0%
!! TGGTTTGGAAGAGAGTATTG+AGG - Chr1:94481623-94481642 MsG0180005649.01.T01:intron 40.0%
!!! ACTTTTGTTGTTTTGCCCCA+TGG - Chr1:94479178-94479197 MsG0180005649.01.T01:intron 40.0%
AAACATGAGCACCTGAAGGA+TGG + Chr1:94480904-94480923 None:intergenic 45.0%
AAAGACCTACCTTCCCGATA+CGG + Chr1:94477895-94477914 None:intergenic 45.0%
AACTACATGGCAGAGACGAA+CGG + Chr1:94479466-94479485 None:intergenic 45.0%
AACTCTTGAACTCGCTACTC+GGG - Chr1:94477270-94477289 MsG0180005649.01.T01:CDS 45.0%
AAGAAGAGTTACTGTCGCCA+TGG - Chr1:94480254-94480273 MsG0180005649.01.T01:intron 45.0%
AAGCATTACCCCAAAAGCTG+GGG + Chr1:94478961-94478980 None:intergenic 45.0%
ACAGTGCATGTGCATCAAAC+AGG + Chr1:94481784-94481803 None:intergenic 45.0%
ACCATTTGCGCAAACATGAG+TGG - Chr1:94477866-94477885 MsG0180005649.01.T01:intron 45.0%
ACTTCAGAAAATGCAGCTGC+AGG + Chr1:94477752-94477771 None:intergenic 45.0%
AGAAGAGTTACTGTCGCCAT+GGG - Chr1:94480255-94480274 MsG0180005649.01.T01:intron 45.0%
AGAGCCTTCCTCAAATACTG+AGG + Chr1:94477684-94477703 None:intergenic 45.0%
AGCAGAAATTCTTGGGACCT+TGG - Chr1:94479895-94479914 MsG0180005649.01.T01:intron 45.0%
AGGAGAGTAATCGAAAGCCA+TGG - Chr1:94478232-94478251 MsG0180005649.01.T01:CDS 45.0%
ATACCCAATTTCGGCCGATA+TGG - Chr1:94478487-94478506 MsG0180005649.01.T01:intron 45.0%
ATATCGGCCGAAATTGGGTA+TGG + Chr1:94478488-94478507 None:intergenic 45.0%
ATCATCCGAATTATCCGGTG+CGG + Chr1:94477613-94477632 None:intergenic 45.0%
ATGTATCAAAACCTGGCCAG+TGG + Chr1:94479204-94479223 None:intergenic 45.0%
CAACTCTTGAACTCGCTACT+CGG - Chr1:94477269-94477288 MsG0180005649.01.T01:CDS 45.0%
CAAGCATTACCCCAAAAGCT+GGG + Chr1:94478962-94478981 None:intergenic 45.0%
CAATATGCTCCTTCTTCCCT+AGG + Chr1:94480633-94480652 None:intergenic 45.0%
CATTTGCGCAAACATGAGTG+GGG - Chr1:94477868-94477887 MsG0180005649.01.T01:intron 45.0%
CCATTTGCGCAAACATGAGT+GGG - Chr1:94477867-94477886 MsG0180005649.01.T01:intron 45.0%
CTCTCCACCATACCCAATTT+CGG - Chr1:94478478-94478497 MsG0180005649.01.T01:intron 45.0%
CTCTGATTGGCAGTAATCGA+GGG + Chr1:94481705-94481724 None:intergenic 45.0%
GACACCTCAGTATTTGAGGA+AGG - Chr1:94477677-94477696 MsG0180005649.01.T01:intron 45.0%
GACAGCAGAATCATTCATGC+AGG + Chr1:94478108-94478127 None:intergenic 45.0%
GCAGAGACGAACGGAAAATA+TGG + Chr1:94479457-94479476 None:intergenic 45.0%
GCCAACCGCAATTTGGATTA+TGG - Chr1:94480279-94480298 MsG0180005649.01.T01:intron 45.0%
GCCATGATATCGGATTATGG+CGG + Chr1:94478522-94478541 None:intergenic 45.0%
GGCAAATGTTTAGCTGATGG+GGG + Chr1:94478023-94478042 None:intergenic 45.0%
GTCTCTGCCATGTAGTTGTT+TGG - Chr1:94479469-94479488 MsG0180005649.01.T01:intron 45.0%
GTGTGTTGGAAGTAAGGTTG+TGG - Chr1:94478779-94478798 MsG0180005649.01.T01:intron 45.0%
GTTCGTGAGTAGGATTACAG+TGG + Chr1:94480781-94480800 None:intergenic 45.0%
TACTTGTCAACGTTACAGGG+TGG - Chr1:94480814-94480833 MsG0180005649.01.T01:intron 45.0%
TATATGGTTCGTGCATGCCA+TGG - Chr1:94478267-94478286 MsG0180005649.01.T01:CDS 45.0%
TCAAGGTCTCAGGTTCCTAT+GGG - Chr1:94479930-94479949 MsG0180005649.01.T01:intron 45.0%
TCATAGATCGACTAATCCGG+CGG + Chr1:94480022-94480041 None:intergenic 45.0%
TCATCTAGATTTACCACGCG+AGG - Chr1:94480590-94480609 MsG0180005649.01.T01:intron 45.0%
TCATGTTTGCGCAAATGGTG+TGG + Chr1:94477865-94477884 None:intergenic 45.0%
TCCGCCATAATCCGATATCA+TGG - Chr1:94478518-94478537 MsG0180005649.01.T01:intron 45.0%
TCTCATGTGAACTCTTGGCT+TGG + Chr1:94481151-94481170 None:intergenic 45.0%
TCTCTGATTGGCAGTAATCG+AGG + Chr1:94481706-94481725 None:intergenic 45.0%
TGTCTCATCATCCAAGCCTA+GGG - Chr1:94480614-94480633 MsG0180005649.01.T01:intron 45.0%
TGTTATCGAATCGGCCATGA+CGG - Chr1:94478430-94478449 MsG0180005649.01.T01:intron 45.0%
TTAGCACTGTTGTCTATGGC+GGG + Chr1:94478596-94478615 None:intergenic 45.0%
TTGTCTCATCATCCAAGCCT+AGG - Chr1:94480613-94480632 MsG0180005649.01.T01:intron 45.0%
! AAAAGGCAGAGAAGTGTGTC+TGG + Chr1:94480732-94480751 None:intergenic 45.0%
! AAAGGCAGAGAAGTGTGTCT+GGG + Chr1:94480731-94480750 None:intergenic 45.0%
! AAATGGTGTGGAGCATCAAG+GGG + Chr1:94477853-94477872 None:intergenic 45.0%
! ACGTTGTCAATGATGGAAGC+GGG + Chr1:94477247-94477266 None:intergenic 45.0%
! AGGGAAGAAGGAGCATATTG+GGG - Chr1:94480633-94480652 MsG0180005649.01.T01:intron 45.0%
! ATTAGTCACCCCAGCTTTTG+GGG - Chr1:94478950-94478969 MsG0180005649.01.T01:intron 45.0%
! ATTGATTGCCTTTGGCGGAT+TGG - Chr1:94481599-94481618 MsG0180005649.01.T01:intron 45.0%
! CAAATGGTGTGGAGCATCAA+GGG + Chr1:94477854-94477873 None:intergenic 45.0%
! CTAGGGAAGAAGGAGCATAT+TGG - Chr1:94480631-94480650 MsG0180005649.01.T01:intron 45.0%
! GGTGCCATGATATCGGATTA+TGG + Chr1:94478525-94478544 None:intergenic 45.0%
!! CACATGTGGTGCCATGATAT+CGG + Chr1:94478532-94478551 None:intergenic 45.0%
!! TTAGCTTGCTTGTTTCCACC+CGG - Chr1:94479019-94479038 MsG0180005649.01.T01:intron 45.0%
!! TTCCATATGGACTAGCCCAT+AGG + Chr1:94479948-94479967 None:intergenic 45.0%
!! TTCCTATGGGCTAGTCCATA+TGG - Chr1:94479943-94479962 MsG0180005649.01.T01:intron 45.0%
!!! TATTATTTAAAATTAATTCA+TGG - Chr1:94478171-94478190 MsG0180005649.01.T01:intron 5.0%
AACATCAACTAGCGTTGCCC+CGG + Chr1:94479276-94479295 None:intergenic 50.0%
AACATGAGTGGGGTCCGTAT+CGG - Chr1:94477878-94477897 MsG0180005649.01.T01:intron 50.0%
AAGTGTGTCTGGGAAGTGAG+AGG + Chr1:94480721-94480740 None:intergenic 50.0%
AATCCCACCATCCACTAGCT+GGG + Chr1:94479995-94480014 None:intergenic 50.0%
ATAGTCGGTACCTCTGAGCA+TGG - Chr1:94480847-94480866 MsG0180005649.01.T01:intron 50.0%
ATCATGGCACCACATGTGGT+CGG - Chr1:94478534-94478553 MsG0180005649.01.T01:intron 50.0%
CCAAGCATTACCCCAAAAGC+TGG + Chr1:94478963-94478982 None:intergenic 50.0%
CCACACATTGCACTGTCACT+AGG - Chr1:94478315-94478334 MsG0180005649.01.T01:intron 50.0%
CCCACTCATGTTTGCGCAAA+TGG + Chr1:94477870-94477889 None:intergenic 50.0%
CCTAGTGACAGTGCAATGTG+TGG + Chr1:94478318-94478337 None:intergenic 50.0%
CGAGTAGCGAGTTCAAGAGT+TGG + Chr1:94477271-94477290 None:intergenic 50.0%
CGATATCATGGCACCACATG+TGG - Chr1:94478530-94478549 MsG0180005649.01.T01:intron 50.0%
CTCAAGGTCTCAGGTTCCTA+TGG - Chr1:94479929-94479948 MsG0180005649.01.T01:intron 50.0%
GCGACAGTAACTCTTCTTCC+GGG + Chr1:94480252-94480271 None:intergenic 50.0%
GGAACAGCTATGCTGACAGT+GGG + Chr1:94477226-94477245 None:intergenic 50.0%
GGCGACAGTAACTCTTCTTC+CGG + Chr1:94480253-94480272 None:intergenic 50.0%
GTTATCGAATCGGCCATGAC+GGG - Chr1:94478431-94478450 MsG0180005649.01.T01:intron 50.0%
TAGGAACCTGAGACCTTGAG+AGG + Chr1:94479929-94479948 None:intergenic 50.0%
TCATCCAAGCCTAGGGAAGA+AGG - Chr1:94480621-94480640 MsG0180005649.01.T01:intron 50.0%
TGGGGAAGAAGAAGAAGCAG+CGG - Chr1:94477083-94477102 MsG0180005649.01.T01:CDS 50.0%
! GCAAATGGTGTGGAGCATCA+AGG + Chr1:94477855-94477874 None:intergenic 50.0%
!! GTGTAGGTTTGGATTGGCAG+TGG + Chr1:94481831-94481850 None:intergenic 50.0%
!! TGGTCGGTATGGTGGGATTT+TGG - Chr1:94478550-94478569 MsG0180005649.01.T01:intron 50.0%
!!! CCAGCTTTTGGGGTAATGCT+TGG - Chr1:94478960-94478979 MsG0180005649.01.T01:intron 50.0%
AAAACCTGGCCAGTGGCCAT+GGG + Chr1:94479197-94479216 None:intergenic 55.0%
ACATGAGTGGGGTCCGTATC+GGG - Chr1:94477879-94477898 MsG0180005649.01.T01:intron 55.0%
ACCACATGTGGTCGGTATGG+TGG - Chr1:94478542-94478561 MsG0180005649.01.T01:intron 55.0%
ATCCCACCATCCACTAGCTG+GGG + Chr1:94479994-94480013 None:intergenic 55.0%
CAAACCAGCCAATCCGCCAA+AGG + Chr1:94481610-94481629 None:intergenic 55.0%
CAATCCCACCATCCACTAGC+TGG + Chr1:94479996-94480015 None:intergenic 55.0%
CCAATTTCGGCCGATATGGC+GGG - Chr1:94478491-94478510 MsG0180005649.01.T01:intron 55.0%
CCACATGTGGTCGGTATGGT+GGG - Chr1:94478543-94478562 MsG0180005649.01.T01:intron 55.0%
CCCAATTTCGGCCGATATGG+CGG - Chr1:94478490-94478509 MsG0180005649.01.T01:intron 55.0%
CCGCCATATCGGCCGAAATT+GGG + Chr1:94478493-94478512 None:intergenic 55.0%
CTTGGAGTGTGCTCCTCTCA+AGG - Chr1:94479913-94479932 MsG0180005649.01.T01:intron 55.0%
GAAGAAGCAGCGGCTGACAA+CGG - Chr1:94477093-94477112 MsG0180005649.01.T01:CDS 55.0%
GATGATGAGACAACCTCGCG+TGG + Chr1:94480606-94480625 None:intergenic 55.0%
GGCGGAAAATCCCGCCATAT+CGG + Chr1:94478504-94478523 None:intergenic 55.0%
GGGAACAGCTATGCTGACAG+TGG + Chr1:94477227-94477246 None:intergenic 55.0%
TCGGCCGAAATTGGGTATGG+TGG + Chr1:94478485-94478504 None:intergenic 55.0%
TGCTCCTTCTTCCCTAGGCT+TGG + Chr1:94480628-94480647 None:intergenic 55.0%
TGTGCTCCTCTCAAGGTCTC+AGG - Chr1:94479920-94479939 MsG0180005649.01.T01:intron 55.0%
TTAAATGGGCCCCCAGCTAG+TGG - Chr1:94479981-94480000 MsG0180005649.01.T01:intron 55.0%
! CTTGAGAGGAGCACACTCCA+AGG + Chr1:94479915-94479934 None:intergenic 55.0%
! GAATCGGCCATGACGGGAAT+CGG - Chr1:94478437-94478456 MsG0180005649.01.T01:intron 55.0%
! GGGGCAACGCTAGTTGATGT+TGG - Chr1:94479275-94479294 MsG0180005649.01.T01:intron 55.0%
! TGGCTTGGCAAGCCGTAGTT+TGG + Chr1:94481136-94481155 None:intergenic 55.0%
!! ATTGCCTTTGGCGGATTGGC+TGG - Chr1:94481603-94481622 MsG0180005649.01.T01:intron 55.0%
!! CAGCTAGTGGATGGTGGGAT+TGG - Chr1:94479994-94480013 MsG0180005649.01.T01:intron 55.0%
!! CTTTGGCGGATTGGCTGGTT+TGG - Chr1:94481608-94481627 MsG0180005649.01.T01:intron 55.0%
!! GAGGTGTCTCAAGGTACTGC+AGG + Chr1:94477665-94477684 None:intergenic 55.0%
!! TTGTTTTGCCCCATGGCCAC+TGG - Chr1:94479185-94479204 MsG0180005649.01.T01:intron 55.0%
AAACCTGGCCAGTGGCCATG+GGG + Chr1:94479196-94479215 None:intergenic 60.0%
CAAAACCTGGCCAGTGGCCA+TGG + Chr1:94479198-94479217 None:intergenic 60.0%
CAAATTGCGGTTGGCGCCCA+TGG + Chr1:94480274-94480293 None:intergenic 60.0%
CATGGGCGCCAACCGCAATT+TGG - Chr1:94480272-94480291 MsG0180005649.01.T01:intron 60.0%
CCCACCATACCGACCACATG+TGG + Chr1:94478546-94478565 None:intergenic 60.0%
CCCGCCATATCGGCCGAAAT+TGG + Chr1:94478494-94478513 None:intergenic 60.0%
GGCACCACATGTGGTCGGTA+TGG - Chr1:94478539-94478558 MsG0180005649.01.T01:intron 60.0%
TCCCACCATCCACTAGCTGG+GGG + Chr1:94479993-94480012 None:intergenic 60.0%
! GCACTGTTGTCTATGGCGGG+TGG + Chr1:94478593-94478612 None:intergenic 60.0%
! TGGTGTGGAGCATCAAGGGG+TGG + Chr1:94477850-94477869 None:intergenic 60.0%
!! ACTGCCACCGATTCCCGTCA+TGG + Chr1:94478447-94478466 None:intergenic 60.0%
!! CTGTTGTCTATGGCGGGTGG+TGG + Chr1:94478590-94478609 None:intergenic 60.0%
!! GATGGTGGGATTGGTACCGC+CGG - Chr1:94480003-94480022 MsG0180005649.01.T01:intron 60.0%
!!! GGGATTTTGGCTCTCCGCCA+TGG - Chr1:94478563-94478582 MsG0180005649.01.T01:intron 60.0%
ATGGGCCCCCAGCTAGTGGA+TGG - Chr1:94479985-94480004 MsG0180005649.01.T01:intron 65.0%
GAGTGGGGTCCGTATCGGGA+AGG - Chr1:94477883-94477902 MsG0180005649.01.T01:intron 65.0%
GGGGTCCGTATCGGGAAGGT+AGG - Chr1:94477887-94477906 MsG0180005649.01.T01:intron 65.0%
! GCCCCCAGCTAGTGGATGGT+GGG - Chr1:94479989-94480008 MsG0180005649.01.T01:intron 65.0%
! TCGGCCATGACGGGAATCGG+TGG - Chr1:94478440-94478459 MsG0180005649.01.T01:intron 65.0%
!! CTATGGCGGGTGGTGGTCCA+TGG + Chr1:94478583-94478602 None:intergenic 65.0%
TTGCCCCATGGCCACTGGCC+AGG - Chr1:94479190-94479209 MsG0180005649.01.T01:intron 70.0%
! GGCCCCCAGCTAGTGGATGG+TGG - Chr1:94479988-94480007 MsG0180005649.01.T01:intron 70.0%
! TGGCGGGTGGTGGTCCATGG+CGG + Chr1:94478580-94478599 None:intergenic 70.0%
Chromosome Type Strat End Strand Name
Chr1 gene 94477071 94481857 94477071 ID=MsG0180005649.01;Name=MsG0180005649.01
Chr1 mRNA 94477071 94481857 94477071 ID=MsG0180005649.01.T01;Parent=MsG0180005649.01;Name=MsG0180005649.01.T01;_AED=0.49;_eAED=0.58;_QI=11|1|0.88|1|1|1|9|0|365
Chr1 exon 94477071 94477335 94477071 ID=MsG0180005649.01.T01:exon:50109;Parent=MsG0180005649.01.T01
Chr1 exon 94478017 94478096 94478017 ID=MsG0180005649.01.T01:exon:50108;Parent=MsG0180005649.01.T01
Chr1 exon 94478215 94478330 94478215 ID=MsG0180005649.01.T01:exon:50107;Parent=MsG0180005649.01.T01
Chr1 exon 94478628 94478706 94478628 ID=MsG0180005649.01.T01:exon:50106;Parent=MsG0180005649.01.T01
Chr1 exon 94479621 94479685 94479621 ID=MsG0180005649.01.T01:exon:50105;Parent=MsG0180005649.01.T01
Chr1 exon 94481024 94481090 94481024 ID=MsG0180005649.01.T01:exon:50104;Parent=MsG0180005649.01.T01
Chr1 exon 94481194 94481361 94481194 ID=MsG0180005649.01.T01:exon:50103;Parent=MsG0180005649.01.T01
Chr1 exon 94481474 94481521 94481474 ID=MsG0180005649.01.T01:exon:50102;Parent=MsG0180005649.01.T01
Chr1 exon 94481637 94481857 94481637 ID=MsG0180005649.01.T01:exon:50101;Parent=MsG0180005649.01.T01
Chr1 five_prime_UTR 94481847 94481857 94481847 ID=MsG0180005649.01.T01:five_prime_utr;Parent=MsG0180005649.01.T01
Chr1 CDS 94481637 94481846 94481637 ID=MsG0180005649.01.T01:cds;Parent=MsG0180005649.01.T01
Chr1 CDS 94481474 94481521 94481474 ID=MsG0180005649.01.T01:cds;Parent=MsG0180005649.01.T01
Chr1 CDS 94481194 94481361 94481194 ID=MsG0180005649.01.T01:cds;Parent=MsG0180005649.01.T01
Chr1 CDS 94481024 94481090 94481024 ID=MsG0180005649.01.T01:cds;Parent=MsG0180005649.01.T01
Chr1 CDS 94479621 94479685 94479621 ID=MsG0180005649.01.T01:cds;Parent=MsG0180005649.01.T01
Chr1 CDS 94478628 94478706 94478628 ID=MsG0180005649.01.T01:cds;Parent=MsG0180005649.01.T01
Chr1 CDS 94478215 94478330 94478215 ID=MsG0180005649.01.T01:cds;Parent=MsG0180005649.01.T01
Chr1 CDS 94478017 94478096 94478017 ID=MsG0180005649.01.T01:cds;Parent=MsG0180005649.01.T01
Chr1 CDS 94477071 94477335 94477071 ID=MsG0180005649.01.T01:cds;Parent=MsG0180005649.01.T01
Gene Sequence

>MsG0180005649.01.T01

ATGGGGAAGAAGAAGAAGCAGCGGCTGACAACGGATGCAGAAACCGAACCTGAACCAAACCCAATAAATGGCAACATCGATGATTCTCACAGTAACAAGAAGCTTAAGAAGAATAAGAAGAACAAATCAAACAAGGAGATACCCACTGTCAGCATAGCTGTTCCCGCTTCCATCATTGACAACGTTCCAACTCTTGAACTCGCTACTCGGCTGGCTAGTCAAATCGCTCGTGCCGCGACTATTTTCCGAATCAATGAGGTGGTTGTGTTTGACAATAAAAGTAATACAGATAAAGGTTATTCCGCACCGGATAATTCGGATGATGAAAGTAGTTCGGTTTTTCTCGTGCGTATCCTGCAGTACCTTGAGACACCTCAGTATTTGAGGAAGGCTCTTTTTCCAATGCATAACAGCTTAAGATTTGTGGGGATGCTGCCACCCCTTGATGCTCCACACCATTTGCGCAAACATGAGTGGGGTCCGTATCGGGAAGGTGTCTCAATAAAAGAAAGACATTCAAACTCCGGGGCAACGCTAGTTGATGTTGGCTTATTTAAGCATGTCGTAGTTGACCAAATACTTGAACCCGGAAGAAGAGTTACTGTCGCCATGGGCGCCAACCGCAATTTGGATTATGATTTACCACGCGAGGTTGTCTCATCATCCAAGCCTAGGGAAGAAGGAGCATATTGGGGATATCAAGTGCGTTATGCTCGCAATATTAGCTCAGTATTTAATGAATGTACATACAAGGGTGGCTATGATTGTATAGTCGGTACCTCTGAGCATGGTCAGATTATTAAGTCATCTGAGCTTGAAATACCATCCTTCAGACATTTATTGATTGCCTTTGGCGGATTGGCTGGTTTGGAAGAGAGTATTGAGGAAGATGATAACTTTAAGGTATTGTGTCGTTCCATTATATATGTGATTATTGCGGTTCCCTCGATTACTGCCAATCAGAGATTCCATAAATTTGACAGAATCATCGGCTACATGCCTTTCTCTGTTGCAACACATTCCTGTTTGATGCACATGCACTGTGAAGCGATAATGTTTTCAGATGATCCACTGCCAATCCAAACCTACACTATTTAG
Protein sequence

>MsG0180005649.01.T01

MGKKKKQRLTTDAETEPEPNPINGNIDDSHSNKKLKKNKKNKSNKEIPTVSIAVPASIIDNVPTLELATRLASQIARAATIFRINEVVVFDNKSNTDKGYSAPDNSDDESSSVFLVRILQYLETPQYLRKALFPMHNSLRFVGMLPPLDAPHHLRKHEWGPYREGVSIKERHSNSGATLVDVGLFKHVVVDQILEPGRRVTVAMGANRNLDYDLPREVVSSSKPREEGAYWGYQVRYARNISSVFNECTYKGGYDCIVGTSEHGQIIKSSELEIPSFRHLLIAFGGLAGLEESIEEDDNFKVLCRSIIYVIIAVPSITANQRFHKFDRIIGYMPFSVATHSCLMHMHCEAIMFSDDPLPIQTYTI*