AlfalfaGEDB | MsG0780040174.01

M. sativa cultivar ZhongmuNo.1 / MsG0780040174.01

KEGG: K11128
GO: GO:0001522 GO:0031429 GO:0042254
PFAM: PF04410

Nr:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0780040174.01.T01	XP_013449501.1	89.64	222	3	1	1	222	1	202	1.78E-121	353

Swissprot:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0780040174.01.T01	Q8VZT0	72.093	172	28	1	51	222	51	202	1.30E-59	189

Trembl:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0780040174.01.T01	A0A072U1E4	89.640	222	3	1	1	222	1	202	8.51e-122	353

TFs/TRs:

Gene ID	Type	Classification

Protein Kinases:

Gene ID	Type	Classification

Network:

Co-expression Network

Gene1	Gene2	correlation coefficient	p_value	FDR
MsG0180003585.01	MsG0780040174.01	0.812224	4.721608e-51	2.984973e-48
MsG0180005110.01	MsG0780040174.01	0.832423	9.532953e-56	1.065048e-52
MsG0180005384.01	MsG0780040174.01	0.822774	1.978465e-53	1.671952e-50
MsG0180005789.01	MsG0780040174.01	0.824228	9.044973e-54	7.963589e-51
MsG0280006301.01	MsG0780040174.01	0.843928	1.036093e-58	1.646354e-55
MsG0280010825.01	MsG0780040174.01	0.823573	1.288144e-53	1.113347e-50
MsG0680031368.01	MsG0780040174.01	0.809117	2.217438e-50	1.290834e-47
MsG0680034485.01	MsG0780040174.01	0.845186	4.751267e-59	7.853748e-56
MsG0480020796.01	MsG0780040174.01	0.832194	1.086522e-55	1.205613e-52
MsG0480021288.01	MsG0780040174.01	0.892949	9.901693e-75	9.244456e-71
MsG0480021985.01	MsG0780040174.01	0.801809	7.555695e-49	3.642412e-46
MsG0480022006.01	MsG0780040174.01	0.823204	1.571116e-53	1.343844e-50
MsG0480022927.01	MsG0780040174.01	0.823128	1.636230e-53	1.396643e-50
MsG0480023996.01	MsG0780040174.01	0.807726	4.390266e-50	2.463732e-47
MsG0580024894.01	MsG0780040174.01	0.840206	9.995388e-58	1.413684e-54
MsG0580026024.01	MsG0780040174.01	-0.810739	9.925182e-51	6.031131e-48
MsG0380015628.01	MsG0780040174.01	-0.820496	6.652374e-53	5.272040e-50
MsG0380015857.01	MsG0780040174.01	0.842088	3.201034e-58	4.800379e-55
MsG0380016760.01	MsG0780040174.01	0.865829	4.445981e-65	1.466571e-61
MsG0380017516.01	MsG0780040174.01	0.924921	3.685631e-90	1.597955e-85
MsG0380017526.01	MsG0780040174.01	0.819623	1.053787e-52	8.150802e-50
MsG0380017664.01	MsG0780040174.01	0.827140	1.844200e-54	1.764948e-51
MsG0580026749.01	MsG0780040174.01	0.845591	3.691119e-59	6.181196e-56
MsG0580028107.01	MsG0780040174.01	0.842613	2.322992e-58	3.541605e-55
MsG0580029754.01	MsG0780040174.01	0.815710	8.041344e-52	5.585828e-49
MsG0280006760.01	MsG0780040174.01	0.840024	1.115457e-57	1.568825e-54
MsG0280007606.01	MsG0780040174.01	0.864848	9.051260e-65	2.882673e-61
MsG0280010519.01	MsG0780040174.01	0.817066	3.997531e-52	2.881768e-49
MsG0780036586.01	MsG0780040174.01	-0.803992	2.675273e-49	1.363721e-46
MsG0780038861.01	MsG0780040174.01	0.907781	3.494546e-81	6.292715e-77
MsG0780039937.01	MsG0780040174.01	0.807445	5.036352e-50	2.805702e-47
MsG0780040174.01	MsG0780040756.01	0.898279	6.200981e-77	7.277556e-73
MsG0780040174.01	MsG0780040849.01	-0.810717	1.003274e-50	6.093011e-48
MsG0780040174.01	MsG0780041306.01	0.832056	1.174851e-55	1.298454e-52

PPI

Gene1	Gene2	Type
MsG0780040174.01	MsG0780037159.01	PPI
MsG0780040174.01	MsG0480020134.01	PPI
MsG0780040174.01	MsG0480021424.01	PPI
MsG0780040174.01	MsG0680035854.01	PPI
MsG0780040174.01	MsG0780040756.01	PPI
MsG0780040174.01	MsG0780037489.01	PPI
MsG0780040174.01	MsG0180002677.01	PPI
MsG0780040174.01	MsG0780040908.01	PPI
MsG0780040174.01	MsG0180006082.01	PPI
MsG0780040174.01	MsG0480022791.01	PPI
MsG0780040174.01	MsG0480019374.01	PPI
MsG0780040174.01	MsG0180004015.01	PPI
MsG0780040174.01	MsG0080047940.01	PPI
MsG0480019373.01	MsG0780040174.01	PPI
MsG0780040174.01	MsG0380014577.01	PPI
MsG0780040174.01	MsG0880046575.01	PPI
MsG0780040174.01	MsG0180004014.01	PPI
MsG0780040174.01	MsG0180005649.01	PPI
MsG0780040174.01	MsG0380016732.01	PPI
MsG0780040174.01	MsG0080047962.01	PPI

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0780040174.01.T01	MTR_7g085640	89.640	222	3	1	1	222	1	202	2.16e-125	353

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0780040174.01.T01	AT3G03920	72.093	172	28	1	51	222	51	202	1.33e-60	189
MsG0780040174.01.T01	AT5G18180	83.673	98	16	0	51	148	38	135	6.54e-56	176

Find 106 sgRNAs with CRISPR-Local

Find 165 sgRNAs with CRISPR-GE

CRISPR-Local

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
GTGGACGTGGTGGTGGTTTC+AGG	0.152779	7:-73922619	MsG0780040174.01.T01:CDS
ATTGTACAGTTGATGTTAAA+TGG	0.216541	7:-73923540	MsG0780040174.01.T01:CDS
AAACTTTAACTTCCGGGTTT+AGG	0.222550	7:+73924308	None:intergenic
AACTTTAACTTCCGGGTTTA+GGG	0.273788	7:+73924309	None:intergenic
GGGAAAGTCGATGAAATATT+TGG	0.274082	7:-73923821	MsG0780040174.01.T01:CDS
CAACTAATATTACATGAAAT+TGG	0.274918	7:+73922571	None:intergenic
CCACGGCCGCCACCTCTTGC+AGG	0.283854	7:+73924216	None:intergenic
CAGGGGAAGGGGCAGATTCT+AGG	0.306220	7:-73922600	MsG0780040174.01.T01:exon
AGAGGTGGCGGCCGTGGTGG+TGG	0.384933	7:-73924210	MsG0780040174.01.T01:CDS
GCTAGAGGCAAGAGCTTCCT+AGG	0.395733	7:+73923621	None:intergenic
CTGCAAAACATGACTCAGAT+TGG	0.398576	7:-73923842	MsG0780040174.01.T01:CDS
AGAGAGAAACTTTAACTTCC+GGG	0.399904	7:+73924302	None:intergenic
CCTGCAAGAGGTGGCGGCCG+TGG	0.400024	7:-73924216	MsG0780040174.01.T01:CDS
AGAGGTGGTGGCCGTGGAGG+TGG	0.402289	7:-73922692	MsG0780040174.01.T01:CDS
TTTGGATGATCGATCACATA+TGG	0.402481	7:-73922528	MsG0780040174.01.T01:three_prime_UTR
GGTGGTGGTTTCAGGGGAAG+GGG	0.406506	7:-73922611	MsG0780040174.01.T01:CDS
TATTTAACTTCTGAATTGAA+TGG	0.410114	7:-73922471	MsG0780040174.01.T01:three_prime_UTR
TGTACTTTAATCGTTTCGTT+TGG	0.416142	7:-73922546	MsG0780040174.01.T01:three_prime_UTR
AGAGGTGGAGGCCGTGGAGG+TGG	0.421064	7:-73922725	MsG0780040174.01.T01:CDS
TTGTACAGTTGATGTTAAAT+GGG	0.423138	7:-73923539	MsG0780040174.01.T01:intron
AGCTGAGCTTCAACAATGGC+GGG	0.425235	7:+73924277	None:intergenic
CAGAGAGAAACTTTAACTTC+CGG	0.427083	7:+73924301	None:intergenic
GTTGCTACTTCATATGCATC+TGG	0.429953	7:-73923663	MsG0780040174.01.T01:CDS
GGTGGTAGAGGTGGAGGCCG+TGG	0.431868	7:-73922731	MsG0780040174.01.T01:CDS
GTGGTGGTGGTTTCAGGGGA+AGG	0.432062	7:-73922613	MsG0780040174.01.T01:CDS
TTCGGCGGTGGACGTGGTGG+TGG	0.435593	7:-73924111	MsG0780040174.01.T01:CDS
TATTGCAGGGGACAAGCATC+AGG	0.437663	7:-73922752	MsG0780040174.01.T01:intron
TCGTGGAAGGGGTCCTCCAA+GGG	0.439215	7:-73922663	MsG0780040174.01.T01:CDS
TACAATTGAAGATTAGCTGC+TGG	0.440920	7:-73922504	MsG0780040174.01.T01:three_prime_UTR
GGTGGAGGCCGTGGAGGTGG+TGG	0.442100	7:-73922722	MsG0780040174.01.T01:CDS
TTCAGTAGAGGTGGTGGCCG+TGG	0.444407	7:-73922698	MsG0780040174.01.T01:CDS
GGTGGTGGCCGTGGAGGTGG+TGG	0.449672	7:-73922689	MsG0780040174.01.T01:CDS
GGTCGATTCGGCGGTGGACG+TGG	0.450036	7:-73924117	MsG0780040174.01.T01:CDS
CACGGCCGCCACCTCTTGCA+GGG	0.459887	7:+73924217	None:intergenic
GGACGTGGTGGTGGTCGATT+CGG	0.462851	7:-73924129	MsG0780040174.01.T01:CDS
GGCGGTGGACGTGGTGGTGG+AGG	0.463762	7:-73924108	MsG0780040174.01.T01:CDS
TGGTGGTGGTTTCAGGGGAA+GGG	0.471183	7:-73922612	MsG0780040174.01.T01:CDS
TTCGTGGAAGGGGTCCTCCA+AGG	0.472505	7:-73922664	MsG0780040174.01.T01:CDS
TGCAAAACATGACTCAGATT+GGG	0.474986	7:-73923841	MsG0780040174.01.T01:CDS
GGTGGACGTGGTGGTGGAGG+TGG	0.479988	7:-73924105	MsG0780040174.01.T01:CDS
GGAGGACCTCTTCCACCCCT+TGG	0.482432	7:+73922647	None:intergenic
TGGACGTGGTGGTGGTTTCA+GGG	0.482520	7:-73922618	MsG0780040174.01.T01:CDS
GGACCTCCCTCCGAAGTTGT+AGG	0.483894	7:-73924069	MsG0780040174.01.T01:intron
CCTAGAGGTGGACGTGGTGG+TGG	0.489017	7:-73922626	MsG0780040174.01.T01:CDS
GGTCCTCCAAGGGGTGGAAG+AGG	0.498835	7:-73922653	MsG0780040174.01.T01:CDS
GGCCGTGGTGGTGGATTCAG+AGG	0.507562	7:-73924201	MsG0780040174.01.T01:CDS
GAAACTCACAGATTCATTGA+TGG	0.508035	7:+73923796	None:intergenic
GGACCTCTTCCACCCCTTGG+AGG	0.510321	7:+73922650	None:intergenic
CAACTGTACAATACTTAGAC+AGG	0.514582	7:+73923551	None:intergenic
GGACAAGCATCAGGTGGTAG+AGG	0.524486	7:-73922743	MsG0780040174.01.T01:CDS
TTTCTATTAAAATGATGGAA+GGG	0.525814	7:-73923689	MsG0780040174.01.T01:CDS
AGGGGAAGGGGCAGATTCTA+GGG	0.527082	7:-73922599	MsG0780040174.01.T01:exon
TACCCACGAACCTACAACTT+CGG	0.527744	7:+73924059	None:intergenic
TGTAACAGCATCTCCTTCAC+AGG	0.530540	7:+73923910	None:intergenic
GCATCAGGTGGTAGAGGTGG+AGG	0.530555	7:-73922737	MsG0780040174.01.T01:CDS
AATATAAGCTAACACACAAA+GGG	0.531380	7:+73922446	None:intergenic
ACGTTTATCCATGCCTGTGA+AGG	0.532059	7:-73923923	MsG0780040174.01.T01:CDS
GCAAGAGGTGGCGGCCGTGG+TGG	0.532210	7:-73924213	MsG0780040174.01.T01:CDS
CCACCACCACGTCCACCTCT+AGG	0.534558	7:+73922626	None:intergenic
CAAGCATCAGGTGGTAGAGG+TGG	0.537811	7:-73922740	MsG0780040174.01.T01:CDS
GGATTCAGAGGTGGCCGAGA+TGG	0.541387	7:-73924189	MsG0780040174.01.T01:CDS
GGAAGGGGTCCTCCAAGGGG+TGG	0.541847	7:-73922659	MsG0780040174.01.T01:CDS
CAGCATCTCCTTCACAGGCA+TGG	0.542692	7:+73923915	None:intergenic
TTCAGAGGTGGCCGAGATGG+TGG	0.544595	7:-73924186	MsG0780040174.01.T01:CDS
GGATTCAGAGGTGGTCGTGA+TGG	0.545084	7:-73924165	MsG0780040174.01.T01:CDS
GGTGGTGGTCGATTCGGCGG+TGG	0.547225	7:-73924123	MsG0780040174.01.T01:CDS
GGTAGAGGTGGAGGCCGTGG+AGG	0.559108	7:-73922728	MsG0780040174.01.T01:CDS
AGAGGTGGTCGTGATGGAGG+AGG	0.560037	7:-73924159	MsG0780040174.01.T01:CDS
TTCAGAGGTGGTCGTGATGG+AGG	0.569077	7:-73924162	MsG0780040174.01.T01:CDS
ACGGCCGCCACCTCTTGCAG+GGG	0.569761	7:+73924218	None:intergenic
GGAGGTGGTGGTTTCAGTAG+AGG	0.571868	7:-73922710	MsG0780040174.01.T01:CDS
CACGAACCTACAACTTCGGA+GGG	0.573435	7:+73924063	None:intergenic
CGTGGTGGTGGTCGATTCGG+CGG	0.575172	7:-73924126	MsG0780040174.01.T01:CDS
GGTGGTTTCAGTAGAGGTGG+TGG	0.576196	7:-73922704	MsG0780040174.01.T01:CDS
GGTGGTGGTTTCAGTAGAGG+TGG	0.576234	7:-73922707	MsG0780040174.01.T01:CDS
AAACTCACAGATTCATTGAT+GGG	0.576692	7:+73923797	None:intergenic
GGCCGAGATGGTGGATTCAG+AGG	0.581009	7:-73924177	MsG0780040174.01.T01:CDS
GGAGGTGGATTTCGTGATGA+AGG	0.587672	7:-73924090	MsG0780040174.01.T01:CDS
GTGAGAACATACTTCGGCTG+AGG	0.591544	7:+73923588	None:intergenic
CAATATAAGCTAACACACAA+AGG	0.595462	7:+73922445	None:intergenic
CACGAAAACCACCACCTCCA+CGG	0.595827	7:+73922681	None:intergenic
CATCACTAAAACCCTAAACC+CGG	0.597117	7:-73924320	None:intergenic
GAGCTGAGCTTCAACAATGG+CGG	0.600723	7:+73924276	None:intergenic
CGATTCGGCGGTGGACGTGG+TGG	0.605050	7:-73924114	MsG0780040174.01.T01:CDS
CCACGAACCTACAACTTCGG+AGG	0.605907	7:+73924062	None:intergenic
AGTAGAGGTGGTGGCCGTGG+AGG	0.611241	7:-73922695	MsG0780040174.01.T01:CDS
CGTGGAAGGGGTCCTCCAAG+GGG	0.615580	7:-73922662	MsG0780040174.01.T01:CDS
AAGGCAGTGAGAACATACTT+CGG	0.616354	7:+73923582	None:intergenic
TGTGAGCTGAGCTTCAACAA+TGG	0.617450	7:+73924273	None:intergenic
GGAAGAGGTCCTCCTAGAGG+TGG	0.618183	7:-73922638	MsG0780040174.01.T01:CDS
TACTGAAACCACCACCTCCA+CGG	0.622081	7:+73922714	None:intergenic
CGAGATGGTGGATTCAGAGG+TGG	0.625804	7:-73924174	MsG0780040174.01.T01:CDS
CCTCCTAGAGGTGGACGTGG+TGG	0.626967	7:-73922629	MsG0780040174.01.T01:CDS
CACCTCTGAATCCACCATCT+CGG	0.628054	7:+73924175	None:intergenic
CTAGAGGCAAGAGCTTCCTA+GGG	0.630481	7:+73923622	None:intergenic
GGACGTGGTGGTGGTTTCAG+GGG	0.633942	7:-73922617	MsG0780040174.01.T01:CDS
TGAGGAAGAAATCTTGCTAG+AGG	0.638685	7:+73923606	None:intergenic
CGGCCGCCACCTCTTGCAGG+GGG	0.639435	7:+73924219	None:intergenic
CGTGGTGGTGGATTCAGAGG+TGG	0.644993	7:-73924198	MsG0780040174.01.T01:CDS
GGTCCTCCTAGAGGTGGACG+TGG	0.648071	7:-73922632	MsG0780040174.01.T01:CDS
CCACCACGTCCACCTCTAGG+AGG	0.651196	7:+73922629	None:intergenic
GGTGGAAGAGGTCCTCCTAG+AGG	0.656466	7:-73922641	MsG0780040174.01.T01:CDS
GAACCTACAACTTCGGAGGG+AGG	0.658354	7:+73924066	None:intergenic
GCTGAGCTTCAACAATGGCG+GGG	0.660274	7:+73924278	None:intergenic
TGCAGGGGACAAGCATCAGG+TGG	0.672433	7:-73922749	MsG0780040174.01.T01:intron
CACCTCTGAATCCACCACCA+CGG	0.697043	7:+73924199	None:intergenic

CRISPR-GE

badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content
!!	CATAAACAAGTAAATTAATT+AGG	+	Chr7:73923277-73923296	None:intergenic	15.0%
!!	CAACTAATATTACATGAAAT+TGG	+	Chr7:73924192-73924211	None:intergenic	20.0%
!!	GATTATACTTGTTTGTTTAA+AGG	-	Chr7:73923643-73923662	MsG0780040174.01.T01:CDS	20.0%
!!!	AAAAAATGGAATTTTCTCAT+TGG	+	Chr7:73922883-73922902	None:intergenic	20.0%
!!!	CTTATATGTTTTGTTGAAAT+GGG	-	Chr7:73923010-73923029	MsG0780040174.01.T01:intron	20.0%
!!!	GTACTTTTCTATTAAAATGA+TGG	-	Chr7:73923066-73923085	MsG0780040174.01.T01:intron	20.0%
!!!	TAAATAGGAGCATTAAAAAA+TGG	+	Chr7:73922897-73922916	None:intergenic	20.0%
!!!	TATTTAACTTCTGAATTGAA+TGG	-	Chr7:73924289-73924308	MsG0780040174.01.T01:five_prime_UTR	20.0%
!!!	TCTTATATGTTTTGTTGAAA+TGG	-	Chr7:73923009-73923028	MsG0780040174.01.T01:intron	20.0%
!!!	TTTCTATTAAAATGATGGAA+GGG	-	Chr7:73923071-73923090	MsG0780040174.01.T01:intron	20.0%
!!!	TTTTCTATTAAAATGATGGA+AGG	-	Chr7:73923070-73923089	MsG0780040174.01.T01:intron	20.0%
!	AATTAATTGTTGTATGCAGT+TGG	-	Chr7:73923909-73923928	MsG0780040174.01.T01:CDS	25.0%
!	AATTGACTGATTATTATTGC+AGG	-	Chr7:73923994-73924013	MsG0780040174.01.T01:intron	25.0%
!	ATAATTAACACAAGGAAATG+TGG	+	Chr7:73923865-73923884	None:intergenic	25.0%
!	ATTGACTGATTATTATTGCA+GGG	-	Chr7:73923995-73924014	MsG0780040174.01.T01:intron	25.0%
!	CATATGAAATAAATCAGTAG+AGG	+	Chr7:73923472-73923491	None:intergenic	25.0%
!	TAATTAACACAAGGAAATGT+GGG	+	Chr7:73923864-73923883	None:intergenic	25.0%
!	TCACAAGCAATCATTAATTT+AGG	+	Chr7:73923569-73923588	None:intergenic	25.0%
!	TGCATACAATAATTAACACA+AGG	+	Chr7:73923873-73923892	None:intergenic	25.0%
!	TTAAAGGATTCTTAGTGTTA+TGG	-	Chr7:73923659-73923678	MsG0780040174.01.T01:CDS	25.0%
!	TTTAGGTAATAATAGAAGCA+TGG	+	Chr7:73923552-73923571	None:intergenic	25.0%
!!	ACTTAGACAGGTTAATTTTA+AGG	+	Chr7:73923200-73923219	None:intergenic	25.0%
!!	ATTGTACAGTTGATGTTAAA+TGG	-	Chr7:73923220-73923239	MsG0780040174.01.T01:intron	25.0%
!!	CTAGGATCAAAAACTAATTT+TGG	+	Chr7:73923804-73923823	None:intergenic	25.0%
!!	TTGTACAGTTGATGTTAAAT+GGG	-	Chr7:73923221-73923240	MsG0780040174.01.T01:intron	25.0%
!!!	ATTTTTTGTTGGCTTTTGAA+AGG	-	Chr7:73923945-73923964	MsG0780040174.01.T01:intron	25.0%
!!!	TTTTTTGTTGGCTTTTGAAA+GGG	-	Chr7:73923946-73923965	MsG0780040174.01.T01:intron	25.0%
	AAAATTAGACATTTGCAGCA+TGG	+	Chr7:73923719-73923738	None:intergenic	30.0%
	AAACTCACAGATTCATTGAT+GGG	+	Chr7:73922966-73922985	None:intergenic	30.0%
	TGTACTTTAATCGTTTCGTT+TGG	-	Chr7:73924214-73924233	MsG0780040174.01.T01:CDS	30.0%
	TTGACTGATTATTATTGCAG+GGG	-	Chr7:73923996-73924015	MsG0780040174.01.T01:intron	30.0%
!	CTATTTCTTGATTGCTATGT+TGG	-	Chr7:73923339-73923358	MsG0780040174.01.T01:intron	30.0%
!	GTCATGTTTTGCAGATAAAT+AGG	+	Chr7:73922912-73922931	None:intergenic	30.0%
!!	GTTTAATTTGATGTTTGCAG+AGG	-	Chr7:73922809-73922828	MsG0780040174.01.T01:intron	30.0%
	AGCATATTGAGGATATAGCT+AGG	+	Chr7:73923822-73923841	None:intergenic	35.0%
	ATCTGTGAGTTTCTCTTTGT+TGG	-	Chr7:73922974-73922993	MsG0780040174.01.T01:intron	35.0%
	CAACTGTACAATACTTAGAC+AGG	+	Chr7:73923212-73923231	None:intergenic	35.0%
	CAGTTCACATATTCTTCAGA+TGG	+	Chr7:73923429-73923448	None:intergenic	35.0%
	CTAATGCATGTTGAACAACA+AGG	+	Chr7:73923695-73923714	None:intergenic	35.0%
	GAAACTCACAGATTCATTGA+TGG	+	Chr7:73922967-73922986	None:intergenic	35.0%
	GCAGATTACATCAAGACAAA+AGG	+	Chr7:73923620-73923639	None:intergenic	35.0%
	GGGAAAGTCGATGAAATATT+TGG	-	Chr7:73922939-73922958	MsG0780040174.01.T01:intron	35.0%
	GGTTACATTCTAGCATATTG+AGG	+	Chr7:73923833-73923852	None:intergenic	35.0%
	TGCAAAACATGACTCAGATT+GGG	-	Chr7:73922919-73922938	MsG0780040174.01.T01:intron	35.0%
	TTTGGATGATCGATCACATA+TGG	-	Chr7:73924232-73924251	MsG0780040174.01.T01:exon	35.0%
!	AAACTTTAACTTCCGGGTTT+AGG	+	Chr7:73922455-73922474	None:intergenic	35.0%
!	ACAAGTTTTACATTGACCCT+AGG	-	Chr7:73923122-73923141	MsG0780040174.01.T01:intron	35.0%
!	AGAGAGAAACTTTAACTTCC+GGG	+	Chr7:73922461-73922480	None:intergenic	35.0%
!	CAGAGAGAAACTTTAACTTC+CGG	+	Chr7:73922462-73922481	None:intergenic	35.0%
!	TACAATTGAAGATTAGCTGC+TGG	-	Chr7:73924256-73924275	MsG0780040174.01.T01:five_prime_UTR	35.0%
!!	GTCTAATTTTGAGTGTGAGA+GGG	-	Chr7:73923729-73923748	MsG0780040174.01.T01:intron	35.0%
!!	TGTCTAATTTTGAGTGTGAG+AGG	-	Chr7:73923728-73923747	MsG0780040174.01.T01:intron	35.0%
!!!	CTATGCGTGGAATTTTTTGT+TGG	-	Chr7:73923934-73923953	MsG0780040174.01.T01:CDS	35.0%
	AAGGAAATGTGGGACATTAC+AGG	+	Chr7:73923854-73923873	None:intergenic	40.0%
	AAGGCAGTGAGAACATACTT+CGG	+	Chr7:73923181-73923200	None:intergenic	40.0%
	CTGCAAAACATGACTCAGAT+TGG	-	Chr7:73922918-73922937	MsG0780040174.01.T01:intron	40.0%
	TGAGGAAGAAATCTTGCTAG+AGG	+	Chr7:73923157-73923176	None:intergenic	40.0%
!	GTTGCTACTTCATATGCATC+TGG	-	Chr7:73923097-73923116	MsG0780040174.01.T01:intron	40.0%
	ACGTTTATCCATGCCTGTGA+AGG	-	Chr7:73922837-73922856	MsG0780040174.01.T01:intron	45.0%
	TACCCACGAACCTACAACTT+CGG	+	Chr7:73922704-73922723	None:intergenic	45.0%
	TATGCAGTTGGATCTATGCG+TGG	-	Chr7:73923921-73923940	MsG0780040174.01.T01:CDS	45.0%
	TGTAACAGCATCTCCTTCAC+AGG	+	Chr7:73922853-73922872	None:intergenic	45.0%
	TGTGAGCTGAGCTTCAACAA+TGG	+	Chr7:73922490-73922509	None:intergenic	45.0%
!!	TTGAGTGTGAGAGGGTGTTA+GGG	-	Chr7:73923737-73923756	MsG0780040174.01.T01:intron	45.0%
!!	TTTGAGTGTGAGAGGGTGTT+AGG	-	Chr7:73923736-73923755	MsG0780040174.01.T01:intron	45.0%
	AGCTGAGCTTCAACAATGGC+GGG	+	Chr7:73922486-73922505	None:intergenic	50.0%
	CACCTCTGAATCCACCATCT+CGG	+	Chr7:73922588-73922607	None:intergenic	50.0%
	CACGAACCTACAACTTCGGA+GGG	+	Chr7:73922700-73922719	None:intergenic	50.0%
	CTAGAGGCAAGAGCTTCCTA+GGG	+	Chr7:73923141-73923160	None:intergenic	50.0%
	CTCCGAAGTTGTAGGTTCGT+GGG	-	Chr7:73922699-73922718	MsG0780040174.01.T01:CDS	50.0%
	GAGCTGAGCTTCAACAATGG+CGG	+	Chr7:73922487-73922506	None:intergenic	50.0%
	GTGAGAACATACTTCGGCTG+AGG	+	Chr7:73923175-73923194	None:intergenic	50.0%
	TACTGAAACCACCACCTCCA+CGG	+	Chr7:73924049-73924068	None:intergenic	50.0%
	TATTGCAGGGGACAAGCATC+AGG	-	Chr7:73924008-73924027	MsG0780040174.01.T01:intron	50.0%
	TGCAGGGGGTCTCATTGTTT+GGG	+	Chr7:73922530-73922549	None:intergenic	50.0%
	TTGCAGGGGGTCTCATTGTT+TGG	+	Chr7:73922531-73922550	None:intergenic	50.0%
!	GGAGGTGGATTTCGTGATGA+AGG	-	Chr7:73922670-73922689	MsG0780040174.01.T01:CDS	50.0%
!!	AGGTGGTGGTTTTCGTGGAA+GGG	-	Chr7:73924085-73924104	MsG0780040174.01.T01:CDS	50.0%
!!	TGAGTGTGAGAGGGTGTTAG+GGG	-	Chr7:73923738-73923757	MsG0780040174.01.T01:intron	50.0%
	ACAATGAGACCCCCTGCAAG+AGG	-	Chr7:73922532-73922551	MsG0780040174.01.T01:three_prime_UTR	55.0%
	AGGGGAAGGGGCAGATTCTA+GGG	-	Chr7:73924161-73924180	MsG0780040174.01.T01:CDS	55.0%
	CAAGCATCAGGTGGTAGAGG+TGG	-	Chr7:73924020-73924039	MsG0780040174.01.T01:intron	55.0%
	CACCTCTGAATCCACCACCA+CGG	+	Chr7:73922564-73922583	None:intergenic	55.0%
	CACGAAAACCACCACCTCCA+CGG	+	Chr7:73924082-73924101	None:intergenic	55.0%
	CAGCATCTCCTTCACAGGCA+TGG	+	Chr7:73922848-73922867	None:intergenic	55.0%
	CCACGAACCTACAACTTCGG+AGG	+	Chr7:73922701-73922720	None:intergenic	55.0%
	CCTCCGAAGTTGTAGGTTCG+TGG	-	Chr7:73922698-73922717	MsG0780040174.01.T01:CDS	55.0%
	GAACCTACAACTTCGGAGGG+AGG	+	Chr7:73922697-73922716	None:intergenic	55.0%
	GCTAGAGGCAAGAGCTTCCT+AGG	+	Chr7:73923142-73923161	None:intergenic	55.0%
	GCTGAGCTTCAACAATGGCG+GGG	+	Chr7:73922485-73922504	None:intergenic	55.0%
	GGACAAGCATCAGGTGGTAG+AGG	-	Chr7:73924017-73924036	MsG0780040174.01.T01:intron	55.0%
	GGATTCAGAGGTGGTCGTGA+TGG	-	Chr7:73922595-73922614	MsG0780040174.01.T01:exon	55.0%
	GGTGGTTTCAGTAGAGGTGG+TGG	-	Chr7:73924056-73924075	MsG0780040174.01.T01:intron	55.0%
	TTCAGAGGTGGTCGTGATGG+AGG	-	Chr7:73922598-73922617	MsG0780040174.01.T01:exon	55.0%
!	GGAGGTGGTGGTTTCAGTAG+AGG	-	Chr7:73924050-73924069	MsG0780040174.01.T01:intron	55.0%
!	GGTGGTGGTTTCAGTAGAGG+TGG	-	Chr7:73924053-73924072	MsG0780040174.01.T01:intron	55.0%
!!	CGAGATGGTGGATTCAGAGG+TGG	-	Chr7:73922586-73922605	MsG0780040174.01.T01:exon	55.0%
!!	CGTGATGGAGGAGGTTTTCG+TGG	-	Chr7:73922610-73922629	MsG0780040174.01.T01:CDS	55.0%
!!	GAGGTGGTGGTTTTCGTGGA+AGG	-	Chr7:73924084-73924103	MsG0780040174.01.T01:CDS	55.0%
!!	GAGTGTGAGAGGGTGTTAGG+GGG	-	Chr7:73923739-73923758	MsG0780040174.01.T01:intron	55.0%
!!	GGTGGTGGTTTTCGTGGAAG+GGG	-	Chr7:73924086-73924105	MsG0780040174.01.T01:CDS	55.0%
!!	TGGACGTGGTGGTGGTTTCA+GGG	-	Chr7:73924142-73924161	MsG0780040174.01.T01:CDS	55.0%
!!	TGGTGGTGGTTTCAGGGGAA+GGG	-	Chr7:73924148-73924167	MsG0780040174.01.T01:CDS	55.0%
	ATGAGACCCCCTGCAAGAGG+TGG	-	Chr7:73922535-73922554	MsG0780040174.01.T01:three_prime_UTR	60.0%
	CAGGGGAAGGGGCAGATTCT+AGG	-	Chr7:73924160-73924179	MsG0780040174.01.T01:CDS	60.0%
	GCATCAGGTGGTAGAGGTGG+AGG	-	Chr7:73924023-73924042	MsG0780040174.01.T01:intron	60.0%
	GGAAGAGGTCCTCCTAGAGG+TGG	-	Chr7:73924122-73924141	MsG0780040174.01.T01:CDS	60.0%
	GGACCTCCCTCCGAAGTTGT+AGG	-	Chr7:73922691-73922710	MsG0780040174.01.T01:CDS	60.0%
	GGATTCAGAGGTGGCCGAGA+TGG	-	Chr7:73922571-73922590	MsG0780040174.01.T01:three_prime_UTR	60.0%
	GGTGGAAGAGGTCCTCCTAG+AGG	-	Chr7:73924119-73924138	MsG0780040174.01.T01:CDS	60.0%
	TCGTGGAAGGGGTCCTCCAA+GGG	-	Chr7:73924097-73924116	MsG0780040174.01.T01:CDS	60.0%
	TGCAGGGGACAAGCATCAGG+TGG	-	Chr7:73924011-73924030	MsG0780040174.01.T01:intron	60.0%
	TTCAGAGGTGGCCGAGATGG+TGG	-	Chr7:73922574-73922593	MsG0780040174.01.T01:three_prime_UTR	60.0%
	TTCGTGGAAGGGGTCCTCCA+AGG	-	Chr7:73924096-73924115	MsG0780040174.01.T01:CDS	60.0%
!	AGAGGTGGTCGTGATGGAGG+AGG	-	Chr7:73922601-73922620	MsG0780040174.01.T01:CDS	60.0%
!	GGAGGAGGTTTTCGTGGACG+TGG	-	Chr7:73922616-73922635	MsG0780040174.01.T01:CDS	60.0%
!	GGAGGTTTTCGTGGACGTGG+TGG	-	Chr7:73922619-73922638	MsG0780040174.01.T01:CDS	60.0%
!	GGTGGTGGTTTCAGGGGAAG+GGG	-	Chr7:73924149-73924168	MsG0780040174.01.T01:CDS	60.0%
!	GGTTTTCGTGGACGTGGTGG+TGG	-	Chr7:73922622-73922641	MsG0780040174.01.T01:CDS	60.0%
!	TTCAGTAGAGGTGGTGGCCG+TGG	-	Chr7:73924062-73924081	MsG0780040174.01.T01:intron	60.0%
!!	CGTGGAGGTGGTGGTTTTCG+TGG	-	Chr7:73924080-73924099	MsG0780040174.01.T01:CDS	60.0%
!!	CGTGGTGGTGGATTCAGAGG+TGG	-	Chr7:73922562-73922581	MsG0780040174.01.T01:three_prime_UTR	60.0%
!!	GGACGTGGTGGTGGTCGATT+CGG	-	Chr7:73922631-73922650	MsG0780040174.01.T01:CDS	60.0%
!!	GGACGTGGTGGTGGTTTCAG+GGG	-	Chr7:73924143-73924162	MsG0780040174.01.T01:CDS	60.0%
!!	GGCCGAGATGGTGGATTCAG+AGG	-	Chr7:73922583-73922602	MsG0780040174.01.T01:exon	60.0%
!!	GTGAGAGGGTGTTAGGGGGT+GGG	-	Chr7:73923743-73923762	MsG0780040174.01.T01:intron	60.0%
!!	GTGGACGTGGTGGTGGTTTC+AGG	-	Chr7:73924141-73924160	MsG0780040174.01.T01:CDS	60.0%
!!	GTGGTGGTGGTTTCAGGGGA+AGG	-	Chr7:73924147-73924166	MsG0780040174.01.T01:CDS	60.0%
!!	TGTGAGAGGGTGTTAGGGGG+TGG	-	Chr7:73923742-73923761	MsG0780040174.01.T01:intron	60.0%
	AGACCCCCTGCAAGAGGTGG+CGG	-	Chr7:73922538-73922557	MsG0780040174.01.T01:three_prime_UTR	65.0%
	CCACCACCACGTCCACCTCT+AGG	+	Chr7:73924137-73924156	None:intergenic	65.0%
	CCACCACGTCCACCTCTAGG+AGG	+	Chr7:73924134-73924153	None:intergenic	65.0%
	CCTAGAGGTGGACGTGGTGG+TGG	-	Chr7:73924134-73924153	MsG0780040174.01.T01:CDS	65.0%
	CCTCCTAGAGGTGGACGTGG+TGG	-	Chr7:73924131-73924150	MsG0780040174.01.T01:CDS	65.0%
	CGTGGAAGGGGTCCTCCAAG+GGG	-	Chr7:73924098-73924117	MsG0780040174.01.T01:CDS	65.0%
	GGACCTCTTCCACCCCTTGG+AGG	+	Chr7:73924113-73924132	None:intergenic	65.0%
	GGAGGACCTCTTCCACCCCT+TGG	+	Chr7:73924116-73924135	None:intergenic	65.0%
	GGTCCTCCAAGGGGTGGAAG+AGG	-	Chr7:73924107-73924126	MsG0780040174.01.T01:CDS	65.0%
	GGTCCTCCTAGAGGTGGACG+TGG	-	Chr7:73924128-73924147	MsG0780040174.01.T01:CDS	65.0%
!	AGTAGAGGTGGTGGCCGTGG+AGG	-	Chr7:73924065-73924084	MsG0780040174.01.T01:intron	65.0%
!!	AGAGGGTGTTAGGGGGTGGG+TGG	-	Chr7:73923746-73923765	MsG0780040174.01.T01:intron	65.0%
!!	CGTGGTGGTGGTCGATTCGG+CGG	-	Chr7:73922634-73922653	MsG0780040174.01.T01:CDS	65.0%
!!	GAGGGTGTTAGGGGGTGGGT+GGG	-	Chr7:73923747-73923766	MsG0780040174.01.T01:intron	65.0%
!!	GGCCGTGGTGGTGGATTCAG+AGG	-	Chr7:73922559-73922578	MsG0780040174.01.T01:three_prime_UTR	65.0%
	ACGGCCGCCACCTCTTGCAG+GGG	+	Chr7:73922545-73922564	None:intergenic	70.0%
	AGAGGTGGAGGCCGTGGAGG+TGG	-	Chr7:73924035-73924054	MsG0780040174.01.T01:intron	70.0%
	CACGGCCGCCACCTCTTGCA+GGG	+	Chr7:73922546-73922565	None:intergenic	70.0%
	GGAAGGGGTCCTCCAAGGGG+TGG	-	Chr7:73924101-73924120	MsG0780040174.01.T01:CDS	70.0%
	GGTAGAGGTGGAGGCCGTGG+AGG	-	Chr7:73924032-73924051	MsG0780040174.01.T01:intron	70.0%
	GGTGGTAGAGGTGGAGGCCG+TGG	-	Chr7:73924029-73924048	MsG0780040174.01.T01:intron	70.0%
	GTGTTAGGGGGTGGGTGGGC+AGG	-	Chr7:73923751-73923770	MsG0780040174.01.T01:intron	70.0%
	TTCGGCGGTGGACGTGGTGG+TGG	-	Chr7:73922649-73922668	MsG0780040174.01.T01:CDS	70.0%
!	AGAGGTGGTGGCCGTGGAGG+TGG	-	Chr7:73924068-73924087	MsG0780040174.01.T01:intron	70.0%
!	CGATTCGGCGGTGGACGTGG+TGG	-	Chr7:73922646-73922665	MsG0780040174.01.T01:CDS	70.0%
!!	GGTCGATTCGGCGGTGGACG+TGG	-	Chr7:73922643-73922662	MsG0780040174.01.T01:CDS	70.0%
!!	GGTGGACGTGGTGGTGGAGG+TGG	-	Chr7:73922655-73922674	MsG0780040174.01.T01:CDS	70.0%
!!	GGTGGTGGTCGATTCGGCGG+TGG	-	Chr7:73922637-73922656	MsG0780040174.01.T01:CDS	70.0%
	CCACGGCCGCCACCTCTTGC+AGG	+	Chr7:73922547-73922566	None:intergenic	75.0%
	CGGCCGCCACCTCTTGCAGG+GGG	+	Chr7:73922544-73922563	None:intergenic	75.0%
	GGTGGAGGCCGTGGAGGTGG+TGG	-	Chr7:73924038-73924057	MsG0780040174.01.T01:intron	75.0%
!	AGAGGTGGCGGCCGTGGTGG+TGG	-	Chr7:73922550-73922569	MsG0780040174.01.T01:three_prime_UTR	75.0%
!	CCTGCAAGAGGTGGCGGCCG+TGG	-	Chr7:73922544-73922563	MsG0780040174.01.T01:three_prime_UTR	75.0%
!	GCAAGAGGTGGCGGCCGTGG+TGG	-	Chr7:73922547-73922566	MsG0780040174.01.T01:three_prime_UTR	75.0%
!	GGTGGTGGCCGTGGAGGTGG+TGG	-	Chr7:73924071-73924090	MsG0780040174.01.T01:CDS	75.0%
!!	GGCGGTGGACGTGGTGGTGG+AGG	-	Chr7:73922652-73922671	MsG0780040174.01.T01:CDS	75.0%

Chromosome	Type	Strat	End	Strand	Name
Chr7	gene	73922453	73924329	73922453	ID=MsG0780040174.01;Name=MsG0780040174.01
Chr7	mRNA	73922453	73924329	73922453	ID=MsG0780040174.01.T01;Parent=MsG0780040174.01;Name=MsG0780040174.01.T01;_AED=0.28;_eAED=0.30;_QI=82\|0.66\|0.75\|1\|1\|1\|4\|148\|222
Chr7	exon	73922453	73922766	73922453	ID=MsG0780040174.01.T01:exon:13363;Parent=MsG0780040174.01.T01
Chr7	exon	73923540	73923715	73923540	ID=MsG0780040174.01.T01:exon:13362;Parent=MsG0780040174.01.T01
Chr7	exon	73923805	73923953	73923805	ID=MsG0780040174.01.T01:exon:13361;Parent=MsG0780040174.01.T01
Chr7	exon	73924070	73924329	73924070	ID=MsG0780040174.01.T01:exon:13360;Parent=MsG0780040174.01.T01
Chr7	five_prime_UTR	73924248	73924329	73924248	ID=MsG0780040174.01.T01:five_prime_utr;Parent=MsG0780040174.01.T01
Chr7	CDS	73924070	73924247	73924070	ID=MsG0780040174.01.T01:cds;Parent=MsG0780040174.01.T01
Chr7	CDS	73923805	73923953	73923805	ID=MsG0780040174.01.T01:cds;Parent=MsG0780040174.01.T01
Chr7	CDS	73923540	73923715	73923540	ID=MsG0780040174.01.T01:cds;Parent=MsG0780040174.01.T01
Chr7	CDS	73922601	73922766	73922601	ID=MsG0780040174.01.T01:cds;Parent=MsG0780040174.01.T01
Chr7	three_prime_UTR	73922453	73922600	73922453	ID=MsG0780040174.01.T01:three_prime_utr;Parent=MsG0780040174.01.T01

Gene Sequence

>MsG0780040174.01.T01

ATGAGACCCCCTGCAAGAGGTGGCGGCCGTGGTGGTGGATTCAGAGGTGGCCGAGATGGTGGATTCAGAGGTGGTCGTGATGGAGGAGGTTTTCGTGGACGTGGTGGTGGTCGATTCGGCGGTGGACGTGGTGGTGGAGGTGGATTTCGTGATGAAGGACCTCCCTCCGAAGTTGTAGAGGTTTCAACGTTTATCCATGCCTGTGAAGGAGATGCTGTTACAAAGCTGACCAATGAGAAAATTCCATTTTTTAATGCTCCTATTTATCTGCAAAACATGACTCAGATTGGGAAAGTCGATGAAATATTTGGTCCCATCAATGAATCTTACTTTTCTATTAAAATGATGGAAGGGATTGTTGCTACTTCATATGCATCTGGTGACAAGTTTTACATTGACCCTAGGAAGCTCTTGCCTCTAGCAAGATTTCTTCCTCAGCCGAAGTATGTTCTCACTGCCTTAAAATTAACCTGTCTAAGTATTGTACAGTTGATGTTAAATGGGGGACAAGCATCAGGTGGTAGAGGTGGAGGCCGTGGAGGTGGTGGTTTCAGTAGAGGTGGTGGCCGTGGAGGTGGTGGTTTTCGTGGAAGGGGTCCTCCAAGGGGTGGAAGAGGTCCTCCTAGAGGTGGACGTGGTGGTGGTTTCAGGGGAAGGGGCAGATTCTAG

Protein sequence

>MsG0780040174.01.T01

MRPPARGGGRGGGFRGGRDGGFRGGRDGGGFRGRGGGRFGGGRGGGGGFRDEGPPSEVVEVSTFIHACEGDAVTKLTNEKIPFFNAPIYLQNMTQIGKVDEIFGPINESYFSIKMMEGIVATSYASGDKFYIDPRKLLPLARFLPQPKYVLTALKLTCLSIVQLMLNGGQASGGRGGGRGGGGFSRGGGRGGGGFRGRGPPRGGRGPPRGGRGGGFRGRGRF*