AlfalfaGEDB | MsG0180005682.01

M. sativa cultivar ZhongmuNo.1 / MsG0180005682.01

KEGG: -
GO: GO:0004672 GO:0005524 GO:0006468
PFAM: PF01657 PF07714

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0180005682.01.T01	KEH43939.1	64.59	658	137	5	4	568	245	899	0	838
MsG0180005682.01.T01	KEH43939.1	32.52	246	134	11	57	282	43	276	7.69E-12	81.3

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0180005682.01.T01	Q8GYA4	37.231	650	287	16	46	588	34	669	3.07E-127	391

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0180005682.01.T01	A0A072VPL3	64.590	658	137	5	4	568	245	899	0.0	838

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
MsG0080049076.01	MsG0180005682.01	-0.805923	1.055907e-49	5.656393e-47
MsG0180005682.01	MsG0280010780.01	-0.805994	1.020169e-49	5.475092e-47
MsG0180005682.01	MsG0380014006.01	-0.802571	5.266691e-49	2.588556e-46
MsG0180005682.01	MsG0380014032.01	-0.808850	2.529025e-50	1.461690e-47
MsG0180005682.01	MsG0480022736.01	0.804874	1.751805e-49	9.135528e-47
MsG0180005682.01	MsG0580026162.01	0.813322	2.714123e-51	1.766887e-48

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0180005682.01.T01	MTR_1g105600	64.590	658	137	5	4	568	245	899	0.0	838
MsG0180005682.01.T01	MTR_1g105600	32.520	246	134	11	57	282	43	276	9.31e-16	81.3
MsG0180005682.01.T01	MTR_8g028065	45.562	676	260	18	12	588	231	897	3.35e-173	514
MsG0180005682.01.T01	MTR_8g028065	34.677	248	133	9	34	273	19	245	1.43e-27	118
MsG0180005682.01.T01	MTR_6g057750	46.719	640	232	13	12	551	241	871	1.17e-171	511
MsG0180005682.01.T01	MTR_6g057750	32.768	177	110	4	94	270	85	252	6.65e-26	113
MsG0180005682.01.T01	MTR_1g105595	48.173	602	226	17	54	588	38	620	8.90e-171	499
MsG0180005682.01.T01	MTR_1g105595	44.684	649	226	17	54	588	38	667	6.31e-163	480
MsG0180005682.01.T01	MTR_6g057770	42.160	676	276	15	12	587	240	900	3.68e-162	486
MsG0180005682.01.T01	MTR_6g057770	41.296	247	122	11	49	282	27	263	1.16e-34	140

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0180005682.01.T01	AT4G23180	37.231	650	287	16	46	588	34	669	3.13e-128	391
MsG0180005682.01.T01	AT4G23270	37.066	634	290	11	51	588	25	645	4.63e-120	369
MsG0180005682.01.T01	AT4G23270	37.066	634	290	11	51	588	25	645	4.63e-120	369
MsG0180005682.01.T01	AT4G23270	37.562	607	272	10	51	561	25	620	1.31e-118	366
MsG0180005682.01.T01	AT4G23160	34.750	659	298	15	46	588	40	682	1.39e-116	362
MsG0180005682.01.T01	AT4G23130	36.167	647	294	14	47	588	27	659	3.74e-113	352
MsG0180005682.01.T01	AT4G23130	35.945	651	294	14	47	588	27	663	2.02e-112	350
MsG0180005682.01.T01	AT3G45860	36.128	656	291	15	51	588	31	676	3.34e-112	350
MsG0180005682.01.T01	AT4G38830	34.551	657	300	18	48	588	23	665	9.94e-107	335
MsG0180005682.01.T01	AT4G05200	35.188	611	277	17	49	549	27	628	3.28e-106	334

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Find 122 sgRNAs with CRISPR-Local

Find 296 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAATATGGTGGTTCAAGAG+GGG	0.653993	1:-94869644	None:intergenic
AAAATTTCATCAATTCTATA+TGG	0.357200	1:+94865118	MsG0180005682.01.T01:CDS
AAATTGCAAACACTCCAAAG+TGG	0.633403	1:-94866333	None:intergenic
AACAAGGAATTGAACAATAT+CGG	0.384363	1:+94869700	MsG0180005682.01.T01:CDS
AACGTTACAAAATTATAAGA+GGG	0.601709	1:+94866885	MsG0180005682.01.T01:CDS
AACTCCAAGGAATTTCATTT+TGG	0.174269	1:-94865358	None:intergenic
AAGATTGGTGAAGGTGGATT+TGG	0.287396	1:+94866404	MsG0180005682.01.T01:CDS
AAGATTTCTTTGCTGTAACT+TGG	0.427482	1:-94866614	None:intergenic
AAGTGGAGAAGCTTTGCAGC+AGG	0.516464	1:-94865160	None:intergenic
AAGTGGAGTCTATCCAGACA+GGG	0.636828	1:+94865207	MsG0180005682.01.T01:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAACCTGATGCATAGTATAT+AGG	+	Chr1:94868281-94868300	MsG0180005682.01.T01:intron	30.0%
AACTTGGGATTTAAATAAGC+TGG	-	Chr1:94868792-94868811	None:intergenic	30.0%
ACTATTGAGAAGATCAACTT+GGG	-	Chr1:94868807-94868826	None:intergenic	30.0%
ACTTATAAAAGAGGTTGAGT+TGG	-	Chr1:94866741-94866760	None:intergenic	30.0%
AGAAATCTTGTGGCATTAAT+AGG	+	Chr1:94866628-94866647	MsG0180005682.01.T01:CDS	30.0%
ATCTGAAAGGATAGAATGAA+AGG	-	Chr1:94865081-94865100	None:intergenic	30.0%
CACATACAGATGTTAGTATT+GGG	+	Chr1:94868361-94868380	MsG0180005682.01.T01:intron	30.0%
CATGTGCATGTAATAATGAA+AGG	-	Chr1:94867127-94867146	None:intergenic	30.0%
CATTAGACAGTTAGTTAGTT+AGG	-	Chr1:94869317-94869336	None:intergenic	30.0%
CTTGTAGTATGGCATTTATA+CGG	+	Chr1:94865979-94865998	MsG0180005682.01.T01:intron	30.0%

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Chromosome	Type	Strat	End	Strand	Name
Chr1	gene	94864642	94869768	94864642	ID=MsG0180005682.01;Name=MsG0180005682.01
Chr1	mRNA	94864642	94869768	94864642	ID=MsG0180005682.01.T01;Parent=MsG0180005682.01;Name=MsG0180005682.01.T01;_AED=0.46;_eAED=0.46;_QI=0\|0\|0\|1\|1\|1\|6\|0\|588
Chr1	exon	94864642	94865509	94864642	ID=MsG0180005682.01.T01:exon:19235;Parent=MsG0180005682.01.T01
Chr1	exon	94866318	94866439	94866318	ID=MsG0180005682.01.T01:exon:19236;Parent=MsG0180005682.01.T01
Chr1	exon	94866517	94866727	94866517	ID=MsG0180005682.01.T01:exon:19237;Parent=MsG0180005682.01.T01
Chr1	exon	94866855	94866951	94866855	ID=MsG0180005682.01.T01:exon:19238;Parent=MsG0180005682.01.T01
Chr1	exon	94867187	94867340	94867187	ID=MsG0180005682.01.T01:exon:19239;Parent=MsG0180005682.01.T01
Chr1	exon	94869454	94869768	94869454	ID=MsG0180005682.01.T01:exon:19240;Parent=MsG0180005682.01.T01
Chr1	CDS	94864642	94865509	94864642	ID=MsG0180005682.01.T01:cds;Parent=MsG0180005682.01.T01
Chr1	CDS	94866318	94866439	94866318	ID=MsG0180005682.01.T01:cds;Parent=MsG0180005682.01.T01
Chr1	CDS	94866517	94866727	94866517	ID=MsG0180005682.01.T01:cds;Parent=MsG0180005682.01.T01
Chr1	CDS	94866855	94866951	94866855	ID=MsG0180005682.01.T01:cds;Parent=MsG0180005682.01.T01
Chr1	CDS	94867187	94867340	94867187	ID=MsG0180005682.01.T01:cds;Parent=MsG0180005682.01.T01
Chr1	CDS	94869454	94869768	94869454	ID=MsG0180005682.01.T01:cds;Parent=MsG0180005682.01.T01

Gene Sequence

>MsG0180005682.01.T01

ATGCCAATGATAGTAAGGAACTCTGAAACTTCAAGCTGTTACATCAAATATGATGTGTACCCTTTCTATCGCCCTAGTAACGCTCCCATACCATCAGAAATTATTCCAGCTTCCAATACACTTGATTCAAAATACTCACATCATCCTGCTTATCTTTCCCACAACTGTTCAACTGTAAGCAATAAAACCATAAACAGTGATTTTCTATCAAATCTCAAAACAATCTTCTCTGCTTTGTCATCAAATGCCATCAGAACCAGTTTCTTTAAGAGGACTGTGGACACGGTCAATGGCCTCTACATGTGTCGTGGTGACATCTCACTCTCCCCTACCCTCTGTCAGCAATGTGTCCAAGATGCAACCAAAAAAATATCTTCGGAGTGCCCTATCTCTAAAGAGGCTATAATTTGGTATGATAAATACTTACTCCGCTATTCCTTTCATTCTATCCTTTCAGATATCGATACAAGTGGTCCAAAATTTCATCAATTCTATATGGCCAATACATTTAACCCAAACCTGCTGCAAAGCTTCTCCACTTGGAAACTAGCAGATACTTTACATGAAGTGGAGTCTATCCAGACAGGGGAGAGTACTATCAAGAATTATGAAACAAGATCGGTAAAATTGAATGAGCATCAAACCCTTTACACTCTTGTTCAATGTACACCAGATTTGTCTGATGGAGACTGCAGCACCTGCCTGAAAAACATTTTCCAAAATGAAATTCCTTGGAGTTGTTTAGCAAGTCCAGAGGGAAAAATTCTATATCCTAGCTGCTATATGATGTTTGGATTGTCCCAATTCTACAACAATAATGATGAACCAGAGGCGTTAGAGCAAGTTAATCCTCCTCCAAAAGCTAAAGTTGGTCATGAAAGTACCACTTTGGAGTGTTTGCAATTTGAAATGGCCGTAATTAAAACAGCAACAAACAACTTTTCACATGAAAACAAGATTGGTGAAGGTGGATTTGGAGAAGTTTACAAGGGCATTCTTTCTGATGGACGGCACATAGCTGTTAAGAGGCTTTCATCAAATTCCAACCAAGGCATAGTCGAGTTCAAGAATGAAATTTTATTGATGGCCAAGTTACAGCAAAGAAATCTTGTGGCATTAATAGGTTTTTGCCTAGAAGAGCAAGAGAAAATTCTTATCTATGAATATGTGTCAAACGGGAGTCTTGATTCCTATTTATTTGATACTCAAGAACAAAAGTTAAGCTGGGCTGAACGTTACAAAATTATAAGAGGGACTGCTCTAGGAATTCTTTATTGCATGAATATTCTCGTCTCAAAGGGTTACATGTCCCCAGAGTATGTAATGCTTGGACAATTTTCGGAGAAGTCGGATGTTTTTAGTTTTGGTGTCATTGTTTTAGAGATTATTACTGGAAAAAGAAATTTAAATCATTATGAATCACATCATGTTATCGAAGGCCTCATAACTTATGCTTGGACAAAATGGGAAGAGAAAAAACCACTTCAACTAATGGATCCTAGCATAGAAGGAACTTATTCACATGAAGAAGTCATCAAATACATCCACATTGGTTTGTTATGTGTTCAAGAAAATCCAGATGACAGACCTACAATGGCAACAATAGCATTCTACCTCAACAGCCTTTCAATCAACCTGCCATCCCCTCTTGAACCACCATATTTTAAGTGTAGCGGAAATGAAGATAACGTGACCTCCAACAAGGAATTGAACAATATCGGTGATTCAACCAACGAAATCAGTGTCACTCAATTCTTTCCTCGTTAG

Protein sequence

>MsG0180005682.01.T01

MPMIVRNSETSSCYIKYDVYPFYRPSNAPIPSEIIPASNTLDSKYSHHPAYLSHNCSTVSNKTINSDFLSNLKTIFSALSSNAIRTSFFKRTVDTVNGLYMCRGDISLSPTLCQQCVQDATKKISSECPISKEAIIWYDKYLLRYSFHSILSDIDTSGPKFHQFYMANTFNPNLLQSFSTWKLADTLHEVESIQTGESTIKNYETRSVKLNEHQTLYTLVQCTPDLSDGDCSTCLKNIFQNEIPWSCLASPEGKILYPSCYMMFGLSQFYNNNDEPEALEQVNPPPKAKVGHESTTLECLQFEMAVIKTATNNFSHENKIGEGGFGEVYKGILSDGRHIAVKRLSSNSNQGIVEFKNEILLMAKLQQRNLVALIGFCLEEQEKILIYEYVSNGSLDSYLFDTQEQKLSWAERYKIIRGTALGILYCMNILVSKGYMSPEYVMLGQFSEKSDVFSFGVIVLEIITGKRNLNHYESHHVIEGLITYAWTKWEEKKPLQLMDPSIEGTYSHEEVIKYIHIGLLCVQENPDDRPTMATIAFYLNSLSINLPSPLEPPYFKCSGNEDNVTSNKELNNIGDSTNEISVTQFFPR*