AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0380014032.01


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0380014032.01.T01 MTR_0002s0420 95.548 292 13 0 1 292 1 292 0.0 570
MsG0380014032.01.T01 MTR_4g073360 95.255 274 13 0 19 292 1 274 0.0 531
MsG0380014032.01.T01 MTR_5g094930 97.015 67 2 0 183 249 30 96 1.99e-41 140
MsG0380014032.01.T01 MTR_7g021750 30.769 286 187 6 10 287 8 290 3.90e-41 146
MsG0380014032.01.T01 MTR_4g051290 30.847 295 191 7 1 287 1 290 4.24e-41 146
MsG0380014032.01.T01 MTR_0002s0380 30.420 286 188 6 10 287 8 290 6.17e-40 143
MsG0380014032.01.T01 MTR_6g033745 46.528 144 35 4 1 110 1 136 5.08e-31 116
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0380014032.01.T01 ATCG00270 97.260 292 8 0 1 292 1 292 0.0 578
MsG0380014032.01.T01 ATCG00020 30.420 286 188 6 10 287 8 290 6.13e-40 143

Find 70 sgRNAs with CRISPR-Local

Find 126 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GAAATGTAACCAACGTTTAT+TGG 0.152838 3:+48693827 None:intergenic
TTGTACCAGTAACTGGTTTA+TGG 0.157376 3:-48693794 MsG0380014032.01.T01:CDS
AAATGATTTATTTGATATTA+TGG 0.174845 3:-48694579 MsG0380014032.01.T01:CDS
CACACTCTTTGTTGTTACTA+TGG 0.219979 3:-48694355 MsG0380014032.01.T01:CDS
TGGATTGGCAAGTTCCTATT+TGG 0.235738 3:-48694429 MsG0380014032.01.T01:CDS
GTAAAATCTCCCTGTGCTTC+AGG 0.300213 3:+48694329 None:intergenic
GAGAATGCGATTGCATTATA+AGG 0.300314 3:+48694194 None:intergenic
ATGTTATTTGTACCAGTAAC+TGG 0.301254 3:-48693801 MsG0380014032.01.T01:CDS
GAAGTTACAACCTTCCAAAT+AGG 0.303615 3:+48694415 None:intergenic
GTTGCTCTCCACGGTGCTTT+CGG 0.314958 3:-48694272 MsG0380014032.01.T01:CDS
CACGGTGCTTTCGGATTAAT+CGG 0.315441 3:-48694263 MsG0380014032.01.T01:CDS
TGGTCACCGCTAACCACTTT+TGG 0.362836 3:-48693875 MsG0380014032.01.T01:CDS
ATGGGAGTTGCTGGTGTATT+GGG 0.376096 3:-48694017 MsG0380014032.01.T01:CDS
ACACTCTTTGTTGTTACTAT+GGG 0.376237 3:-48694354 MsG0380014032.01.T01:CDS
GCAACTCCCATCATATGAAA+TGG 0.378299 3:+48694029 None:intergenic
AAAAGCAACCCCAAAGATTT+GGG 0.380424 3:+48693851 None:intergenic
AATAGGTATTGGTATTTATC+CGG 0.384488 3:-48693380 MsG0380014032.01.T01:intron
GTACCACCTTTGTAACTTCA+TGG 0.390224 3:-48694460 MsG0380014032.01.T01:CDS
GCCCTACTATGCGCTATTCA+TGG 0.397868 3:-48693990 MsG0380014032.01.T01:CDS
TGGTTCTTTGCGCCTAGTTT+TGG 0.399423 3:-48694113 MsG0380014032.01.T01:CDS
TTTCATATGATGGGAGTTGC+TGG 0.401398 3:-48694026 MsG0380014032.01.T01:CDS
CTCATCCATAAACCAGTTAC+TGG 0.402670 3:+48693789 None:intergenic
ATTAAACCCATTTCATATGA+TGG 0.404659 3:-48694036 MsG0380014032.01.T01:CDS
ATTTATCCACTAGGTCAGTC+TGG 0.438674 3:-48694137 MsG0380014032.01.T01:CDS
GATGGGAGTTGCTGGTGTAT+TGG 0.444635 3:-48694018 MsG0380014032.01.T01:CDS
ACCACCCAATTGACACCAAC+GGG 0.447715 3:+48694307 None:intergenic
CACCATGAATAGCGCATAGT+AGG 0.451041 3:+48693988 None:intergenic
TTTACCCGTTGGTGTCAATT+GGG 0.451297 3:-48694311 MsG0380014032.01.T01:CDS
GAAAATACGTTATTTGAAGA+TGG 0.467422 3:-48693957 MsG0380014032.01.T01:CDS
ATATTATGGATGACTGGTTA+CGG 0.469228 3:-48694565 MsG0380014032.01.T01:CDS
TAAGTTTCTTCCGCTTGAGT+TGG 0.470351 3:+48693903 None:intergenic
CAAAGATTTGGGACCAAAAG+TGG 0.470373 3:+48693862 None:intergenic
AAGTTTCTTCCGCTTGAGTT+GGG 0.471818 3:+48693904 None:intergenic
AGAATGCGATTGCATTATAA+GGG 0.476455 3:+48694195 None:intergenic
ATGTCCAATTATGAAACCCT+TGG 0.480474 3:+48694057 None:intergenic
GTAACTTCATGGTATACTCA+TGG 0.485071 3:-48694449 MsG0380014032.01.T01:CDS
ACTGACCTAGTGGATAAATC+AGG 0.486322 3:+48694141 None:intergenic
TATTTGATATTATGGATGAC+TGG 0.486484 3:-48694571 MsG0380014032.01.T01:CDS
GGTTTATGGATGAGTGCTCT+TGG 0.487258 3:-48693780 MsG0380014032.01.T01:CDS
ATCCACTAGGTCAGTCTGGT+TGG 0.491601 3:-48694133 MsG0380014032.01.T01:CDS
TATAATGCAATCGCATTCTC+CGG 0.499878 3:-48694191 MsG0380014032.01.T01:CDS
CAACTCCCATCATATGAAAT+GGG 0.501015 3:+48694030 None:intergenic
AGCGGAAGAAACTTATTCAA+TGG 0.507359 3:-48693895 MsG0380014032.01.T01:CDS
TTAAACCCATTTCATATGAT+GGG 0.515998 3:-48694035 MsG0380014032.01.T01:CDS
ACTATGGGGTCCTGAAGCAC+AGG 0.517502 3:-48694339 MsG0380014032.01.T01:CDS
GAGTGTGCTAAACTATTAGC+AGG 0.518169 3:+48694371 None:intergenic
ATCACTATGACTATAGCTCT+TGG 0.530083 3:-48694620 None:intergenic
TTGGCAAGTTCCTATTTGGA+AGG 0.551100 3:-48694425 MsG0380014032.01.T01:CDS
CACTCTTTGTTGTTACTATG+GGG 0.552525 3:-48694353 MsG0380014032.01.T01:CDS
ACCATGAATAGCGCATAGTA+GGG 0.553237 3:+48693989 None:intergenic
ACCCGTTGGTGTCAATTGGG+TGG 0.554774 3:-48694308 MsG0380014032.01.T01:CDS
TTCATGGTATACTCATGGAT+TGG 0.559848 3:-48694444 MsG0380014032.01.T01:CDS
ATAGCTGCTACACCAAAACT+AGG 0.575741 3:+48694101 None:intergenic
GTATTCCTGATTTATCCACT+AGG 0.576834 3:-48694146 MsG0380014032.01.T01:CDS
CTTGAGTTGGGTTAAAAGCA+CGG 0.578060 3:+48693916 None:intergenic
ACGTTATTTGAAGATGGTGA+TGG 0.581496 3:-48693951 MsG0380014032.01.T01:CDS
CCCACGGCAAAATAGGCGCA+AGG 0.582421 3:+48694497 None:intergenic
GCAAGGAAAGAGCAATAGAC+CGG 0.584469 3:+48694514 None:intergenic
GACCACCCAATTGACACCAA+CGG 0.589862 3:+48694306 None:intergenic
TTGGGACCAAAAGTGGTTAG+CGG 0.592833 3:+48693869 None:intergenic
ATGAGTGCTCTTGGAGTAGT+CGG 0.592915 3:-48693771 MsG0380014032.01.T01:intron
AGTATACCATGAAGTTACAA+AGG 0.625491 3:+48694454 None:intergenic
AACCAACCAGACTGACCTAG+TGG 0.633960 3:+48694131 None:intergenic
GGTGTCAATTGGGTGGTCTG+TGG 0.641395 3:-48694301 MsG0380014032.01.T01:CDS
TATGGATGACTGGTTACGGA+GGG 0.661750 3:-48694561 MsG0380014032.01.T01:CDS
CGATTAATCCGAAAGCACCG+TGG 0.662103 3:+48694264 None:intergenic
TTATGGATGACTGGTTACGG+AGG 0.682555 3:-48694562 MsG0380014032.01.T01:CDS
ATACCATGAAGTTACAAAGG+TGG 0.691961 3:+48694457 None:intergenic
CTATGGGGTCCTGAAGCACA+GGG 0.692896 3:-48694338 MsG0380014032.01.T01:CDS
AGGTTGTAACTTCTTAACTG+CGG 0.695920 3:-48694405 MsG0380014032.01.T01:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAATGATTTATTTGATATTA+TGG - Chr3:48693359-48693378 MsG0380014032.01.T01:CDS 10.0%
!! AAGATAGATAATAAATAAAT+AGG + Chr3:48694433-48694452 None:intergenic 10.0%
!! TTTATTTATTATCTATCTTA+CGG - Chr3:48694434-48694453 MsG0380014032.01.T01:CDS 10.0%
!!! AAATAAATCATTTTCATCTT+TGG + Chr3:48693352-48693371 None:intergenic 15.0%
!! AATTATGTGAACTATCAAAA+AGG - Chr3:48694219-48694238 MsG0380014032.01.T01:CDS 20.0%
!! ATAAATACCAATACCTATTA+CGG + Chr3:48694557-48694576 None:intergenic 20.0%
!! ATCGAAATAAATAATTCTCT+CGG + Chr3:48694520-48694539 None:intergenic 20.0%
!! ATTATGTGAACTATCAAAAA+GGG - Chr3:48694220-48694239 MsG0380014032.01.T01:CDS 20.0%
!! GAATCAAAAAAATAAGAGTT+TGG + Chr3:48694493-48694512 None:intergenic 20.0%
!! TTCCAAAAAAACTATCAATT+CGG + Chr3:48694333-48694352 None:intergenic 20.0%
!!! AACTCTTATTTTTTTGATTC+TGG - Chr3:48694493-48694512 MsG0380014032.01.T01:CDS 20.0%
!!! ACTCTTATTTTTTTGATTCT+GGG - Chr3:48694494-48694513 MsG0380014032.01.T01:CDS 20.0%
!!! TTCAAATAACGTATTTTCTA+CGG + Chr3:48693979-48693998 None:intergenic 20.0%
! AGTTAATATCATTCCAATTG+CGG + Chr3:48694410-48694429 None:intergenic 25.0%
! ATTAAACCCATTTCATATGA+TGG - Chr3:48693902-48693921 MsG0380014032.01.T01:CDS 25.0%
! GAAAATACGTTATTTGAAGA+TGG - Chr3:48693981-48694000 MsG0380014032.01.T01:CDS 25.0%
! GAGAATGAAAAAATGAAATC+CGG + Chr3:48694580-48694599 None:intergenic 25.0%
! TAAATACCAATACCTATTAC+GGG + Chr3:48694556-48694575 None:intergenic 25.0%
! TATTTGATATTATGGATGAC+TGG - Chr3:48693367-48693386 MsG0380014032.01.T01:CDS 25.0%
! TTAAACCCATTTCATATGAT+GGG - Chr3:48693903-48693922 MsG0380014032.01.T01:CDS 25.0%
!!! AATAGGTATTGGTATTTATC+CGG - Chr3:48694558-48694577 MsG0380014032.01.T01:CDS 25.0%
!!! CATGAAAAGATATTTTTGAC+TGG + Chr3:48694362-48694381 None:intergenic 25.0%
!!! GATTCATTCTATTTTTCCAA+GGG - Chr3:48693865-48693884 MsG0380014032.01.T01:CDS 25.0%
!!! GGATTTCATTTTTTCATTCT+CGG - Chr3:48694579-48694598 MsG0380014032.01.T01:CDS 25.0%
ACAGAAACAAAAACAGCAAT+TGG + Chr3:48693774-48693793 None:intergenic 30.0%
AGAATGCGATTGCATTATAA+GGG + Chr3:48693746-48693765 None:intergenic 30.0%
AGTATACCATGAAGTTACAA+AGG + Chr3:48693487-48693506 None:intergenic 30.0%
GAAATGTAACCAACGTTTAT+TGG + Chr3:48694114-48694133 None:intergenic 30.0%
TTGTGAATCCATATTATGAG+CGG - Chr3:48694299-48694318 MsG0380014032.01.T01:CDS 30.0%
! ATATTATGGATGACTGGTTA+CGG - Chr3:48693373-48693392 MsG0380014032.01.T01:CDS 30.0%
! ATGTTATTTGTACCAGTAAC+TGG - Chr3:48694137-48694156 MsG0380014032.01.T01:CDS 30.0%
! TTTTCCAAGGGTTTCATAAT+TGG - Chr3:48693877-48693896 MsG0380014032.01.T01:CDS 30.0%
!! ACACTCTTTGTTGTTACTAT+GGG - Chr3:48693584-48693603 MsG0380014032.01.T01:intron 30.0%
!! ATTACTTTTGTAACCGCAAT+TGG - Chr3:48694394-48694413 MsG0380014032.01.T01:CDS 30.0%
!! CGATTCATTCTATTTTTCCA+AGG - Chr3:48693864-48693883 MsG0380014032.01.T01:CDS 30.0%
!!! TGCCGAATTGATAGTTTTTT+TGG - Chr3:48694328-48694347 MsG0380014032.01.T01:CDS 30.0%
!!! TTGCTTTTTCCAATAAACGT+TGG - Chr3:48694102-48694121 MsG0380014032.01.T01:CDS 30.0%
AAAAAGCAACCCCAAAGATT+TGG + Chr3:48694091-48694110 None:intergenic 35.0%
AAAAGCAACCCCAAAGATTT+GGG + Chr3:48694090-48694109 None:intergenic 35.0%
AACAAAAACAGCAATTGGAC+CGG + Chr3:48693769-48693788 None:intergenic 35.0%
AAGAGTAAATATTGCCTCGA+TGG + Chr3:48694271-48694290 None:intergenic 35.0%
ACCAACCCACAAAAACAAAA+CGG + Chr3:48693404-48693423 None:intergenic 35.0%
ACGTTATTTGAAGATGGTGA+TGG - Chr3:48693987-48694006 MsG0380014032.01.T01:CDS 35.0%
AGCGGAAGAAACTTATTCAA+TGG - Chr3:48694043-48694062 MsG0380014032.01.T01:CDS 35.0%
AGGTTGTAACTTCTTAACTG+CGG - Chr3:48693533-48693552 MsG0380014032.01.T01:intron 35.0%
ATACCATGAAGTTACAAAGG+TGG + Chr3:48693484-48693503 None:intergenic 35.0%
ATGTCCAATTATGAAACCCT+TGG + Chr3:48693884-48693903 None:intergenic 35.0%
CAACAAAACCGCTCATAATA+TGG + Chr3:48694310-48694329 None:intergenic 35.0%
CAACTCCCATCATATGAAAT+GGG + Chr3:48693911-48693930 None:intergenic 35.0%
CAATACCTATTACGGGTATA+AGG + Chr3:48694549-48694568 None:intergenic 35.0%
CTTATACCCGTAATAGGTAT+TGG - Chr3:48694547-48694566 MsG0380014032.01.T01:CDS 35.0%
GAAGTTACAACCTTCCAAAT+AGG + Chr3:48693526-48693545 None:intergenic 35.0%
GAGAATGCGATTGCATTATA+AGG + Chr3:48693747-48693766 None:intergenic 35.0%
GTAACTTCATGGTATACTCA+TGG - Chr3:48693489-48693508 MsG0380014032.01.T01:intron 35.0%
GTATTCCTGATTTATCCACT+AGG - Chr3:48693792-48693811 MsG0380014032.01.T01:CDS 35.0%
GTGAACTATCAAAAAGGGAA+TGG - Chr3:48694225-48694244 MsG0380014032.01.T01:CDS 35.0%
TATAATGCAATCGCATTCTC+CGG - Chr3:48693747-48693766 MsG0380014032.01.T01:intron 35.0%
TCTATCCTTATACCCGTAAT+AGG - Chr3:48694541-48694560 MsG0380014032.01.T01:CDS 35.0%
TTCATGGTATACTCATGGAT+TGG - Chr3:48693494-48693513 MsG0380014032.01.T01:intron 35.0%
! ACTTTTGGTCCCAAATCTTT+GGG - Chr3:48694078-48694097 MsG0380014032.01.T01:CDS 35.0%
! TTGTACCAGTAACTGGTTTA+TGG - Chr3:48694144-48694163 MsG0380014032.01.T01:CDS 35.0%
! TTTTTCATTCTCGGTTGACA+AGG - Chr3:48694588-48694607 MsG0380014032.01.T01:CDS 35.0%
!! CACACTCTTTGTTGTTACTA+TGG - Chr3:48693583-48693602 MsG0380014032.01.T01:intron 35.0%
!! CACTCTTTGTTGTTACTATG+GGG - Chr3:48693585-48693604 MsG0380014032.01.T01:intron 35.0%
AAGTTTCTTCCGCTTGAGTT+GGG + Chr3:48694037-48694056 None:intergenic 40.0%
ACCATGAATAGCGCATAGTA+GGG + Chr3:48693952-48693971 None:intergenic 40.0%
ATAGCTGCTACACCAAAACT+AGG + Chr3:48693840-48693859 None:intergenic 40.0%
ATCTTACGGCAGATGTTCTA+TGG - Chr3:48694448-48694467 MsG0380014032.01.T01:CDS 40.0%
ATTTATCCACTAGGTCAGTC+TGG - Chr3:48693801-48693820 MsG0380014032.01.T01:CDS 40.0%
CTCATCCATAAACCAGTTAC+TGG + Chr3:48694152-48694171 None:intergenic 40.0%
GAGTGTGCTAAACTATTAGC+AGG + Chr3:48693570-48693589 None:intergenic 40.0%
GCAACTCCCATCATATGAAA+TGG + Chr3:48693912-48693931 None:intergenic 40.0%
GTACCACCTTTGTAACTTCA+TGG - Chr3:48693478-48693497 MsG0380014032.01.T01:intron 40.0%
TAAGTTTCTTCCGCTTGAGT+TGG + Chr3:48694038-48694057 None:intergenic 40.0%
TTGGCAAGTTCCTATTTGGA+AGG - Chr3:48693513-48693532 MsG0380014032.01.T01:intron 40.0%
! ACTGACCTAGTGGATAAATC+AGG + Chr3:48693800-48693819 None:intergenic 40.0%
! CAAAGATTTGGGACCAAAAG+TGG + Chr3:48694079-48694098 None:intergenic 40.0%
! CACTTTTGGTCCCAAATCTT+TGG - Chr3:48694077-48694096 MsG0380014032.01.T01:CDS 40.0%
! CTTTTGGTCCCAAATCTTTG+GGG - Chr3:48694079-48694098 MsG0380014032.01.T01:CDS 40.0%
! TGCTTTTAACCCAACTCAAG+CGG - Chr3:48694025-48694044 MsG0380014032.01.T01:CDS 40.0%
! TTTCATATGATGGGAGTTGC+TGG - Chr3:48693912-48693931 MsG0380014032.01.T01:CDS 40.0%
!! CTTGAGTTGGGTTAAAAGCA+CGG + Chr3:48694025-48694044 None:intergenic 40.0%
!! TGGATTGGCAAGTTCCTATT+TGG - Chr3:48693509-48693528 MsG0380014032.01.T01:intron 40.0%
!! TTTACCCGTTGGTGTCAATT+GGG - Chr3:48693627-48693646 MsG0380014032.01.T01:intron 40.0%
!!! ACCGTTTTGTTTTTGTGGGT+TGG - Chr3:48693400-48693419 MsG0380014032.01.T01:intron 40.0%
!!! AGGGACCGTTTTGTTTTTGT+GGG - Chr3:48693396-48693415 MsG0380014032.01.T01:intron 40.0%
!!! TTTGTTTTTGTGGGTTGGTC+CGG - Chr3:48693405-48693424 MsG0380014032.01.T01:intron 40.0%
!!! TTTTACCCGTTGGTGTCAAT+TGG - Chr3:48693626-48693645 MsG0380014032.01.T01:intron 40.0%
ATGAGTGCTCTTGGAGTAGT+CGG - Chr3:48694167-48694186 MsG0380014032.01.T01:CDS 45.0%
ATGGGAGTTGCTGGTGTATT+GGG - Chr3:48693921-48693940 MsG0380014032.01.T01:CDS 45.0%
CACCATGAATAGCGCATAGT+AGG + Chr3:48693953-48693972 None:intergenic 45.0%
CACGGTGCTTTCGGATTAAT+CGG - Chr3:48693675-48693694 MsG0380014032.01.T01:intron 45.0%
CGATCAATGAGATTCCATCG+AGG - Chr3:48694254-48694273 MsG0380014032.01.T01:CDS 45.0%
GCAAGGAAAGAGCAATAGAC+CGG + Chr3:48693427-48693446 None:intergenic 45.0%
GGTTTATGGATGAGTGCTCT+TGG - Chr3:48694158-48694177 MsG0380014032.01.T01:CDS 45.0%
GTAAAATCTCCCTGTGCTTC+AGG + Chr3:48693612-48693631 None:intergenic 45.0%
TTGGGACCAAAAGTGGTTAG+CGG + Chr3:48694072-48694091 None:intergenic 45.0%
! TATGGATGACTGGTTACGGA+GGG - Chr3:48693377-48693396 MsG0380014032.01.T01:CDS 45.0%
! TGGACTTTTGTTGCTCTCCA+CGG - Chr3:48693657-48693676 MsG0380014032.01.T01:intron 45.0%
! TGGTTCTTTGCGCCTAGTTT+TGG - Chr3:48693825-48693844 MsG0380014032.01.T01:CDS 45.0%
! TTATGGATGACTGGTTACGG+AGG - Chr3:48693376-48693395 MsG0380014032.01.T01:CDS 45.0%
!!! GAGGGACCGTTTTGTTTTTG+TGG - Chr3:48693395-48693414 MsG0380014032.01.T01:intron 45.0%
AACCAACCAGACTGACCTAG+TGG + Chr3:48693810-48693829 None:intergenic 50.0%
ACCACCCAATTGACACCAAC+GGG + Chr3:48693634-48693653 None:intergenic 50.0%
ATCCACTAGGTCAGTCTGGT+TGG - Chr3:48693805-48693824 MsG0380014032.01.T01:CDS 50.0%
GACCACCCAATTGACACCAA+CGG + Chr3:48693635-48693654 None:intergenic 50.0%
GATGGGAGTTGCTGGTGTAT+TGG - Chr3:48693920-48693939 MsG0380014032.01.T01:CDS 50.0%
GCCCTACTATGCGCTATTCA+TGG - Chr3:48693948-48693967 MsG0380014032.01.T01:CDS 50.0%
! CACAGGGAGATTTTACCCGT+TGG - Chr3:48693616-48693635 MsG0380014032.01.T01:intron 50.0%
! TGGTCACCGCTAACCACTTT+TGG - Chr3:48694063-48694082 MsG0380014032.01.T01:CDS 50.0%
!! CGATTAATCCGAAAGCACCG+TGG + Chr3:48693677-48693696 None:intergenic 50.0%
ACTATGGGGTCCTGAAGCAC+AGG - Chr3:48693599-48693618 MsG0380014032.01.T01:intron 55.0%
CTATGGGGTCCTGAAGCACA+GGG - Chr3:48693600-48693619 MsG0380014032.01.T01:intron 55.0%
GGTGTCAATTGGGTGGTCTG+TGG - Chr3:48693637-48693656 MsG0380014032.01.T01:intron 55.0%
GTTGCTCTCCACGGTGCTTT+CGG - Chr3:48693666-48693685 MsG0380014032.01.T01:intron 55.0%
! CCTTGCGCCTATTTTGCCGT+GGG - Chr3:48693441-48693460 MsG0380014032.01.T01:intron 55.0%
! CTTGCGCCTATTTTGCCGTG+GGG - Chr3:48693442-48693461 MsG0380014032.01.T01:intron 55.0%
! TCCTTGCGCCTATTTTGCCG+TGG - Chr3:48693440-48693459 MsG0380014032.01.T01:intron 55.0%
! TTGCGCCTATTTTGCCGTGG+GGG - Chr3:48693443-48693462 MsG0380014032.01.T01:intron 55.0%
!! ACCCGTTGGTGTCAATTGGG+TGG - Chr3:48693630-48693649 MsG0380014032.01.T01:intron 55.0%
ACCTGTGAACCAACCCCCCA+CGG + Chr3:48693460-48693479 None:intergenic 60.0%
CCAACCCCCCACGGCAAAAT+AGG + Chr3:48693451-48693470 None:intergenic 60.0%
CCCACGGCAAAATAGGCGCA+AGG + Chr3:48693444-48693463 None:intergenic 60.0%
! CCTATTTTGCCGTGGGGGGT+TGG - Chr3:48693448-48693467 MsG0380014032.01.T01:intron 60.0%
! TGCGCCTATTTTGCCGTGGG+GGG - Chr3:48693444-48693463 MsG0380014032.01.T01:intron 60.0%
!! GCCGTGGGGGGTTGGTTCAC+AGG - Chr3:48693456-48693475 MsG0380014032.01.T01:intron 70.0%
Chromosome Type Strat End Strand Name
Chr3 gene 48693324 48694636 48693324 ID=MsG0380014032.01;Name=MsG0380014032.01
Chr3 mRNA 48693324 48694636 48693324 ID=MsG0380014032.01.T01;Parent=MsG0380014032.01;Name=MsG0380014032.01.T01;_AED=0.50;_eAED=0.96;_QI=0|0|0|1|1|1|2|0|312
Chr3 exon 48693772 48694636 48693772 ID=MsG0380014032.01.T01:exon:56983;Parent=MsG0380014032.01.T01
Chr3 exon 48693324 48693397 48693324 ID=MsG0380014032.01.T01:exon:56982;Parent=MsG0380014032.01.T01
Chr3 CDS 48693772 48694636 48693772 ID=MsG0380014032.01.T01:cds;Parent=MsG0380014032.01.T01
Chr3 CDS 48693324 48693397 48693324 ID=MsG0380014032.01.T01:cds;Parent=MsG0380014032.01.T01
Gene Sequence

>MsG0380014032.01.T01

ATGACTATAGCTCTTGGTAAATTTACCAAAGATGAAAATGATTTATTTGATATTATGGATGACTGGTTACGGAGGGACCGTTTTGTTTTTGTGGGTTGGTCCGGTCTATTGCTCTTTCCTTGCGCCTATTTTGCCGTGGGGGGTTGGTTCACAGGTACCACCTTTGTAACTTCATGGTATACTCATGGATTGGCAAGTTCCTATTTGGAAGGTTGTAACTTCTTAACTGCGGCAGTCTCTACTCCTGCTAATAGTTTAGCACACTCTTTGTTGTTACTATGGGGTCCTGAAGCACAGGGAGATTTTACCCGTTGGTGTCAATTGGGTGGTCTGTGGACTTTTGTTGCTCTCCACGGTGCTTTCGGATTAATCGGTTTTATGTTACGTCAATTTGAACTTGCTCGATCTGTTCAATTGCGCCCTTATAATGCAATCGCATTCTCCGGTCCAATTGCTGTTTTTGTTTCTGTATTCCTGATTTATCCACTAGGTCAGTCTGGTTGGTTCTTTGCGCCTAGTTTTGGTGTAGCAGCTATATTTCGATTCATTCTATTTTTCCAAGGGTTTCATAATTGGACATTAAACCCATTTCATATGATGGGAGTTGCTGGTGTATTGGGCGCTGCCCTACTATGCGCTATTCATGGTGCTACCGTAGAAAATACGTTATTTGAAGATGGTGATGGCGCAAATACATTCCGTGCTTTTAACCCAACTCAAGCGGAAGAAACTTATTCAATGGTCACCGCTAACCACTTTTGGTCCCAAATCTTTGGGGTTGCTTTTTCCAATAAACGTTGGTTACATTTCTTTATGTTATTTGTACCAGTAACTGGTTTATGGATGAGTGCTCTTGGAGTAGTCGGTATTGGTATTTATCCGGATTTCATTTTTTCATTCTCGGTTGACAAGGTTGAAGCTATTCTAGCTAATTTTTGA

Protein sequence

>MsG0380014032.01.T01

MTIALGKFTKDENDLFDIMDDWLRRDRFVFVGWSGLLLFPCAYFAVGGWFTGTTFVTSWYTHGLASSYLEGCNFLTAAVSTPANSLAHSLLLLWGPEAQGDFTRWCQLGGLWTFVALHGAFGLIGFMLRQFELARSVQLRPYNAIAFSGPIAVFVSVFLIYPLGQSGWFFAPSFGVAAIFRFILFFQGFHNWTLNPFHMMGVAGVLGAALLCAIHGATVENTLFEDGDGANTFRAFNPTQAEETYSMVTANHFWSQIFGVAFSNKRWLHFFMLFVPVTGLWMSALGVVGIGIYPDFIFSFSVDKVEAILANF*