AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0180005826.01

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0180005826.01.T01 MTR_1g107510 95.217 230 10 1 1 230 1 229 4.38e-152 425
MsG0180005826.01.T01 MTR_1g107510 94.686 207 10 1 1 207 1 206 3.79e-135 380
MsG0180005826.01.T01 MTR_1g107525 71.429 196 55 1 35 230 18 212 5.46e-103 300
MsG0180005826.01.T01 MTR_1g107525 73.410 173 45 1 35 207 18 189 5.69e-94 275
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0180005826.01.T01 AT4G35220 73.239 213 54 2 18 230 22 231 1.62e-111 323
MsG0180005826.01.T01 AT1G44542 62.821 234 78 4 2 230 1 230 8.98e-96 283
MsG0180005826.01.T01 AT4G34180 70.968 186 53 1 46 230 29 214 1.03e-93 277

Find 78 sgRNAs with CRISPR-Local

Find 410 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTGTGAATTTCAAGCCAAAA+TGG 0.187556 1:+96608166 MsG0180005826.01.T01:CDS
GCAAAGTAGTGAACCCATTT+TGG 0.215847 1:-96608180 None:intergenic
GTTCACAGGTCTTACCCTTT+TGG 0.295164 1:+96602707 MsG0180005826.01.T01:intron
AGCACACGGCTTACACCTTT+AGG 0.307337 1:-96603445 None:intergenic
AGCTTTGGCTTCTAACTGTT+TGG 0.346453 1:-96608251 None:intergenic
CCACGGGACACCAACATTAC+TGG 0.346815 1:+96602738 MsG0180005826.01.T01:CDS
CACAAGCTATGTTGGATTCA+TGG 0.353798 1:+96604432 MsG0180005826.01.T01:CDS
GCACACGGCTTACACCTTTA+GGG 0.368911 1:-96603444 None:intergenic
CAGTCGCCGGCGTCAAGGCC+CGG 0.372844 1:-96601986 None:intergenic
GACTCCCAAACCGGCAACTC+GGG 0.389954 1:-96602100 None:intergenic
ATGGGCATTGTAGTTAGCTT+TGG 0.403841 1:-96608266 None:intergenic
AAGAATGGCTCACGCGCTAA+TGG 0.409048 1:+96602166 MsG0180005826.01.T01:CDS
TATGATAATTACTTTGATGC+TGG 0.412727 1:+96602247 MsG0180005826.01.T01:CDS
GCCGGTGAGGCCACAGTCGC+CGG 0.413340 1:-96601999 None:intergenic
CTTGATTTGCGTCTCCTCAA+TGG 0.415869 1:+96602286 MsG0180005826.01.T01:CDS
ACCGCTTATCCTTCCGTCCC+GGG 0.438372 1:+96601968 MsG0180005826.01.T01:CDS
AATGGCTCCGCTATGCAGCT+TGG 0.453227 1:+96602184 MsG0180005826.01.T01:CDS
CACCGCTTATCCTTCCGTCC+CGG 0.455242 1:+96601967 MsG0180005826.01.T01:CDS
GGAGATATCGAATATTCTTC+CGG 0.458439 1:-96602065 None:intergenic
CCGGTTTGGGAGTCGAAGGA+AGG 0.460231 1:+96602109 MsG0180005826.01.T01:CDS
CCCGTGGAACATCAACCAAA+AGG 0.466200 1:-96602722 None:intergenic
TGTGAATTTCAAGCCAAAAT+GGG 0.469318 1:+96608167 MsG0180005826.01.T01:CDS
AACACTGACATCAAACTTGT+TGG 0.472801 1:+96604481 MsG0180005826.01.T01:CDS
CGACTCCCAAACCGGCAACT+CGG 0.474298 1:-96602101 None:intergenic
TCATGGAGGATGGTGCAAAA+TGG 0.478285 1:+96604449 MsG0180005826.01.T01:CDS
TCCGTCCCGGGCCTTGACGC+CGG 0.483600 1:+96601980 MsG0180005826.01.T01:CDS
AGTCGCCGGCGTCAAGGCCC+GGG 0.490607 1:-96601985 None:intergenic
AAATTTGACACAAGCTATGT+TGG 0.493173 1:+96604424 MsG0180005826.01.T01:CDS
AGGATAAGCGGTGGAGGCTG+CGG 0.494461 1:-96601957 None:intergenic
GCCGGCGACTGTGGCCTCAC+CGG 0.495178 1:+96601998 MsG0180005826.01.T01:CDS
CTTGCTGTCAGCATGAAGAA+TGG 0.499558 1:+96602151 MsG0180005826.01.T01:CDS
AGCGGTGGAGGCTGCGGCGA+AGG 0.503162 1:-96601951 None:intergenic
CATTGAGGAGACGCAAATCA+AGG 0.503455 1:-96602285 None:intergenic
GTAATTATCATAGAAATGAC+CGG 0.506288 1:-96602236 None:intergenic
GACGGAAGGATAAGCGGTGG+AGG 0.510312 1:-96601963 None:intergenic
GGCCACAGTCGCCGGCGTCA+AGG 0.514344 1:-96601991 None:intergenic
GGCCTTGACGCCGGCGACTG+TGG 0.514570 1:+96601989 MsG0180005826.01.T01:CDS
TACACCTTTAGGGATATTCA+AGG 0.526764 1:-96603434 None:intergenic
AAGGGTTAGCACACTTCTTG+TGG 0.531080 1:+96602128 MsG0180005826.01.T01:CDS
CCTTCCTTCGACTCCCAAAC+CGG 0.534156 1:-96602109 None:intergenic
GGAGGATGGTGCAAAATGGC+TGG 0.537011 1:+96604453 MsG0180005826.01.T01:CDS
CCGTGGAACATCAACCAAAA+GGG 0.544626 1:-96602721 None:intergenic
TCAGAACATTAAATACTGAC+AGG 0.552482 1:+96603470 MsG0180005826.01.T01:CDS
GCATCGTAGACTTCACGTCT+TGG 0.553005 1:-96602043 None:intergenic
AAGTCCTTGAATATCCCTAA+AGG 0.553722 1:+96603430 MsG0180005826.01.T01:CDS
GCGTCAAGGCCCGGGACGGA+AGG 0.557277 1:-96601977 None:intergenic
TCGTAGACTTCACGTCTTGG+AGG 0.557597 1:-96602040 None:intergenic
ACTCCCAAACCGGCAACTCG+GGG 0.563819 1:-96602099 None:intergenic
ATGCAGCTTGGTGCTCATAC+CGG 0.565219 1:+96602196 MsG0180005826.01.T01:CDS
GCCCGGGACGGAAGGATAAG+CGG 0.577570 1:-96601969 None:intergenic
AACAAGGAGAGTTTCGTCGC+CGG 0.580714 1:-96602017 None:intergenic
CCAGTAATGTTGGTGTCCCG+TGG 0.584532 1:-96602738 None:intergenic
CGGTTTGGGAGTCGAAGGAA+GGG 0.590025 1:+96602110 MsG0180005826.01.T01:CDS
GCCGGCGTCAAGGCCCGGGA+CGG 0.590482 1:-96601981 None:intergenic
ATTGAGGAGACGCAAATCAA+GGG 0.592715 1:-96602284 None:intergenic
GTGAAAAGAATAAAAGCTCG+AGG 0.592921 1:+96601846 MsG0180005826.01.T01:five_prime_UTR
GTTGCACATACCAGTAATGT+TGG 0.593032 1:-96602748 None:intergenic
AGAAGGATGGTATACCATTG+AGG 0.596031 1:-96602300 None:intergenic
AGACGTGAAGTCTACGATGC+CGG 0.601420 1:+96602046 MsG0180005826.01.T01:CDS
GGGTGCATCAACATGAGTAC+CGG 0.613968 1:-96602215 None:intergenic
TTAATGTTCTGAAGAGCACA+CGG 0.616948 1:-96603459 None:intergenic
GTTGCCGGTTTGGGAGTCGA+AGG 0.619010 1:+96602105 MsG0180005826.01.T01:CDS
GGATGGTGCAAAATGGCTGG+TGG 0.627941 1:+96604456 MsG0180005826.01.T01:CDS
TGCCGCGGCTTATGTTAACT+CGG 0.628421 1:+96606205 MsG0180005826.01.T01:CDS
CTTCACGTCTTGGAGGAACA+AGG 0.629716 1:-96602033 None:intergenic
GGTACTCATGTTGATGCACC+CGG 0.650752 1:+96602217 MsG0180005826.01.T01:CDS
AGTTGATTACTTATCTGCCG+CGG 0.652105 1:+96606190 MsG0180005826.01.T01:CDS
CGGGACGGAAGGATAAGCGG+TGG 0.658701 1:-96601966 None:intergenic
TATGTTGGATTCATGGAGGA+TGG 0.658773 1:+96604439 MsG0180005826.01.T01:CDS
TAGAAGTAGAGACTTCATCA+TGG 0.660610 1:-96601903 None:intergenic
TGAAAAGAATAAAAGCTCGA+GGG 0.661441 1:+96601847 MsG0180005826.01.T01:five_prime_UTR
GGAGAGTTTCGTCGCCGGTG+AGG 0.662074 1:-96602012 None:intergenic
TAATTATCATAGAAATGACC+GGG 0.665351 1:-96602235 None:intergenic
CTCCCAAACCGGCAACTCGG+GGG 0.669929 1:-96602098 None:intergenic
AAAGAATAAAAGCTCGAGGG+AGG 0.688450 1:+96601850 MsG0180005826.01.T01:five_prime_UTR
ATGAGCACCAAGCTGCATAG+CGG 0.703513 1:-96602191 None:intergenic
TACCGAGTTAACATAAGCCG+CGG 0.703746 1:-96606207 None:intergenic
AAGCTATGTTGGATTCATGG+AGG 0.740720 1:+96604435 MsG0180005826.01.T01:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AATAATTAAAATTATTGTTG+AGG - Chr1:96602574-96602593 None:intergenic 10.0%
!! CAAATAATATATAGTTTATT+TGG + Chr1:96606913-96606932 MsG0180005826.01.T01:intron 10.0%
!!! TATTTTCATTCTATTTTTTA+AGG + Chr1:96605898-96605917 MsG0180005826.01.T01:intron 10.0%
!!! TCTTTATTTATTCAAATAAT+TGG + Chr1:96604560-96604579 MsG0180005826.01.T01:intron 10.0%
!!! TTAAAACGTAAATTTTAAAT+AGG - Chr1:96606055-96606074 None:intergenic 10.0%
!! AAAAATGTACATAGAATTAA+AGG - Chr1:96607925-96607944 None:intergenic 15.0%
!! AAAATGTACATAGAATTAAA+GGG - Chr1:96607924-96607943 None:intergenic 15.0%
!! AAACATTTATACTGTATATA+AGG + Chr1:96607555-96607574 MsG0180005826.01.T01:intron 15.0%
!! AAATGAAATTTATTACCATA+AGG - Chr1:96606529-96606548 None:intergenic 15.0%
!! AACATTTATACTGTATATAA+GGG + Chr1:96607556-96607575 MsG0180005826.01.T01:intron 15.0%
!! ACTTGAAAATAATATATCAT+TGG - Chr1:96603863-96603882 None:intergenic 15.0%
!! AGTATTATTTGTTTATGATA+AGG - Chr1:96602393-96602412 None:intergenic 15.0%
!! ATAAAATAGAATATGCAAAT+AGG + Chr1:96606358-96606377 MsG0180005826.01.T01:intron 15.0%
!! TAAATTTAGAAGCAAAAAAT+AGG + Chr1:96604051-96604070 MsG0180005826.01.T01:intron 15.0%
!! TATTAATTAAATATAACCAC+CGG - Chr1:96603374-96603393 None:intergenic 15.0%
!! TCTCTACAAAATTAAAAATT+AGG + Chr1:96604788-96604807 MsG0180005826.01.T01:intron 15.0%
!! TTATGGTAATAAATTTCATT+TGG + Chr1:96606528-96606547 MsG0180005826.01.T01:intron 15.0%
!!! AATGATATATTATTTTCAAG+TGG + Chr1:96603862-96603881 MsG0180005826.01.T01:intron 15.0%
!!! AATTTTTTTGTTGAAATGTT+AGG + Chr1:96604383-96604402 MsG0180005826.01.T01:intron 15.0%
!!! ACTTTTAATATTATTGATGA+TGG + Chr1:96606470-96606489 MsG0180005826.01.T01:intron 15.0%
!! AATTCATAAAAGAGAAAGAA+AGG + Chr1:96603965-96603984 MsG0180005826.01.T01:intron 20.0%
!! ATCATTCAAGATACTAATAT+TGG - Chr1:96607378-96607397 None:intergenic 20.0%
!! ATTTGAATAAATAAAGACAC+AGG - Chr1:96604557-96604576 None:intergenic 20.0%
!! GAAAAAAATTGTTATCAAAC+AGG - Chr1:96602922-96602941 None:intergenic 20.0%
!! GAAAACATTTCTTTATTCTT+TGG - Chr1:96607777-96607796 None:intergenic 20.0%
!! TAGGTTGTAATATTATTGTT+GGG + Chr1:96607425-96607444 MsG0180005826.01.T01:intron 20.0%
!! TTAAAATTATTGTTGAGGAT+CGG - Chr1:96602569-96602588 None:intergenic 20.0%
!! TTCTATCACATTTATTCTTT+GGG - Chr1:96603212-96603231 None:intergenic 20.0%
!! TTTATGTTGTAGTAAAATGA+AGG - Chr1:96604227-96604246 None:intergenic 20.0%
!! TTTCAAACAAGGAAATAAAA+TGG - Chr1:96606987-96607006 None:intergenic 20.0%
!! TTTCTATCACATTTATTCTT+TGG - Chr1:96603213-96603232 None:intergenic 20.0%
!!! AAGAAGAGTATATATAACAA+AGG - Chr1:96607954-96607973 None:intergenic 20.0%
!!! ATATCAGAGTTTCAATTTTT+GGG + Chr1:96603669-96603688 MsG0180005826.01.T01:intron 20.0%
!!! ATTCATATACTTCTATCTTT+TGG + Chr1:96603639-96603658 MsG0180005826.01.T01:intron 20.0%
!!! TATATCAGAGTTTCAATTTT+TGG + Chr1:96603668-96603687 MsG0180005826.01.T01:intron 20.0%
!!! TTAATATTATTGATGATGGT+GGG + Chr1:96606474-96606493 MsG0180005826.01.T01:intron 20.0%
!!! TTAGGTTGTAATATTATTGT+TGG + Chr1:96607424-96607443 MsG0180005826.01.T01:intron 20.0%
!!! TTTAATATTATTGATGATGG+TGG + Chr1:96606473-96606492 MsG0180005826.01.T01:intron 20.0%
!!! TTTATCTTTAAGGTTTAAGA+TGG + Chr1:96603764-96603783 MsG0180005826.01.T01:intron 20.0%
!!! TTTGTTATATATACTCTTCT+TGG + Chr1:96607953-96607972 MsG0180005826.01.T01:intron 20.0%
! AAATTGCATTAGCACAAAAA+TGG - Chr1:96606150-96606169 None:intergenic 25.0%
! AAATTTACGAATGCAAACTT+TGG - Chr1:96604593-96604612 None:intergenic 25.0%
! AATACTAACTGCTTATGTAT+AGG + Chr1:96602407-96602426 MsG0180005826.01.T01:intron 25.0%
! ACTAATTAATGTCGAAAGTA+TGG + Chr1:96606400-96606419 MsG0180005826.01.T01:intron 25.0%
! AGAAGTTACATATGACTTAT+AGG + Chr1:96604359-96604378 MsG0180005826.01.T01:intron 25.0%
! ATATGTATGCATTCTATTCT+TGG + Chr1:96606870-96606889 MsG0180005826.01.T01:intron 25.0%
! ATGAAGTCGTAAAGTTTATT+TGG - Chr1:96608033-96608052 None:intergenic 25.0%
! ATGCAATTTACCAAACTTTA+AGG + Chr1:96604113-96604132 MsG0180005826.01.T01:intron 25.0%
! ATTTCAGTGAAAAGGTTTAT+AGG + Chr1:96604191-96604210 MsG0180005826.01.T01:intron 25.0%
! CAACAATCATAGTAGTATTA+TGG + Chr1:96602346-96602365 MsG0180005826.01.T01:intron 25.0%
! CATATAGCTTATAAGCAAAA+TGG + Chr1:96602895-96602914 MsG0180005826.01.T01:intron 25.0%
! CCAAATATGATAAATGAAAC+AGG - Chr1:96602626-96602645 None:intergenic 25.0%
! CCTGTTTCATTTATCATATT+TGG + Chr1:96602623-96602642 MsG0180005826.01.T01:intron 25.0%
! GAACAGAAATTCAAAACAAA+CGG - Chr1:96603326-96603345 None:intergenic 25.0%
! GTAATTATCATAGAAATGAC+CGG - Chr1:96602239-96602258 None:intergenic 25.0%
! GTATTGAAATGAAGAAAAGA+AGG - Chr1:96602320-96602339 None:intergenic 25.0%
! TAATTATCATAGAAATGACC+GGG - Chr1:96602238-96602257 None:intergenic 25.0%
! TATGATAATTACTTTGATGC+TGG + Chr1:96602247-96602266 MsG0180005826.01.T01:CDS 25.0%
! TATTATTCATAAGCTTGTCA+AGG + Chr1:96605011-96605030 MsG0180005826.01.T01:intron 25.0%
! TCAGAAAACAGTTTGTAAAT+GGG - Chr1:96603302-96603321 None:intergenic 25.0%
! TCATAAATTATCATGACACT+AGG - Chr1:96606704-96606723 None:intergenic 25.0%
! TTTACGACTTCATATAAAGT+TGG + Chr1:96608040-96608059 MsG0180005826.01.T01:intron 25.0%
! TTTACTACAACATAAACTTG+AGG + Chr1:96604231-96604250 MsG0180005826.01.T01:intron 25.0%
!! AAGAAATGTTTTCAACAGAT+TGG + Chr1:96607784-96607803 MsG0180005826.01.T01:intron 25.0%
!! CAATTATTCTTCTTTTTGCT+AGG - Chr1:96605310-96605329 None:intergenic 25.0%
!! CTAATTAATGTCGAAAGTAT+GGG + Chr1:96606401-96606420 MsG0180005826.01.T01:intron 25.0%
!! CTACAAAATTTTATACACCA+AGG + Chr1:96607675-96607694 MsG0180005826.01.T01:intron 25.0%
!! CTAGAATTTTATAGCTGATA+AGG + Chr1:96606782-96606801 MsG0180005826.01.T01:intron 25.0%
!! GCTTCTTCATTTTATCTTTA+AGG + Chr1:96603754-96603773 MsG0180005826.01.T01:intron 25.0%
!! TCAAGATACTAATATTGGTT+TGG - Chr1:96607373-96607392 None:intergenic 25.0%
!! TTTATTCTTTGGGAAGATTT+AGG - Chr1:96603202-96603221 None:intergenic 25.0%
!!! AACTGTTTACATGCTTTTTT+AGG - Chr1:96605613-96605632 None:intergenic 25.0%
!!! ACTGTTTACATGCTTTTTTA+GGG - Chr1:96605612-96605631 None:intergenic 25.0%
!!! AGTGTTAAGATGTTTTTTCA+AGG + Chr1:96603571-96603590 MsG0180005826.01.T01:intron 25.0%
!!! ATTTTTTTGGATGAAAAGGA+AGG + Chr1:96604755-96604774 MsG0180005826.01.T01:intron 25.0%
!!! CATGTATTTTGCTGTTATTT+TGG - Chr1:96605450-96605469 None:intergenic 25.0%
!!! GTCTATCTTGTAATTTTTTC+CGG + Chr1:96604729-96604748 MsG0180005826.01.T01:intron 25.0%
!!! TCCATTTTAATTTTACTCAC+CGG + Chr1:96608063-96608082 MsG0180005826.01.T01:intron 25.0%
!!! TTTAAATAGGTATTGACAAG+TGG - Chr1:96606042-96606061 None:intergenic 25.0%
!!! TTTTTTGTTGAAATGTTAGG+CGG + Chr1:96604386-96604405 MsG0180005826.01.T01:intron 25.0%
!!! TTTTTTTGGATGAAAAGGAA+GGG + Chr1:96604756-96604775 MsG0180005826.01.T01:intron 25.0%
AAAAAAGAAGCCAATCCAAA+CGG + Chr1:96605137-96605156 MsG0180005826.01.T01:intron 30.0%
AAAGGATTAGAAAAGATCCA+TGG + Chr1:96603983-96604002 MsG0180005826.01.T01:intron 30.0%
AAATTTGACACAAGCTATGT+TGG + Chr1:96604424-96604443 MsG0180005826.01.T01:CDS 30.0%
AACAAAGGAAATAACCAAGT+AGG - Chr1:96605273-96605292 None:intergenic 30.0%
AACAATCAGAGACTAAAAGT+TGG - Chr1:96607225-96607244 None:intergenic 30.0%
AATATCTAATCGAGGATACT+AGG - Chr1:96605349-96605368 None:intergenic 30.0%
ACAAGTTTATCTCTTTACCT+TGG - Chr1:96607695-96607714 None:intergenic 30.0%
ACCGGTGAGTAAAATTAAAA+TGG - Chr1:96608067-96608086 None:intergenic 30.0%
AGAAATCACTGTGTATGATT+CGG + Chr1:96604510-96604529 MsG0180005826.01.T01:intron 30.0%
AGAATTAAAGGGATGAATCA+TGG - Chr1:96607913-96607932 None:intergenic 30.0%
AGCTAAAGGTTGAAATTACA+AGG - Chr1:96604319-96604338 None:intergenic 30.0%
AGTATCCTCGATTAGATATT+GGG + Chr1:96605349-96605368 MsG0180005826.01.T01:intron 30.0%
ATAGAGCCTTAACATTTACA+CGG - Chr1:96602840-96602859 None:intergenic 30.0%
ATATGCAAATAGGATCTTGT+TGG + Chr1:96606368-96606387 MsG0180005826.01.T01:intron 30.0%
ATGCCATTCACTTCAATTAT+GGG - Chr1:96605164-96605183 None:intergenic 30.0%
ATGTTTGAAAGTGAACTACA+TGG - Chr1:96607733-96607752 None:intergenic 30.0%
ATTATTGCGTCAATAGCTTA+AGG - Chr1:96607514-96607533 None:intergenic 30.0%
ATTCCATAGCGAAAAGAAAA+AGG - Chr1:96607989-96608008 None:intergenic 30.0%
ATTGAGTGAATATAATCTGC+TGG - Chr1:96607091-96607110 None:intergenic 30.0%
ATTTCCTTTGTTGACCTTTA+AGG + Chr1:96605281-96605300 MsG0180005826.01.T01:intron 30.0%
CAAAAATAAGCCAATCCAAA+CGG - Chr1:96604963-96604982 None:intergenic 30.0%
CAAACATATCACTAAGCTAA+AGG - Chr1:96604333-96604352 None:intergenic 30.0%
CATCTAATGTAGTCTTCATT+TGG + Chr1:96605242-96605261 MsG0180005826.01.T01:intron 30.0%
CATTGTTCCATTCATGAAAA+TGG - Chr1:96607852-96607871 None:intergenic 30.0%
CTCAGAAAACAGTTTGTAAA+TGG - Chr1:96603303-96603322 None:intergenic 30.0%
GTTTCAACATTTGATATGAC+AGG - Chr1:96607266-96607285 None:intergenic 30.0%
TAAATATAACCACCGGTAAT+GGG - Chr1:96603367-96603386 None:intergenic 30.0%
TAGTATCCTCGATTAGATAT+TGG + Chr1:96605348-96605367 MsG0180005826.01.T01:intron 30.0%
TATGCAATGTCTTCTTTGTT+TGG - Chr1:96604858-96604877 None:intergenic 30.0%
TCAGAACATTAAATACTGAC+AGG + Chr1:96603470-96603489 MsG0180005826.01.T01:CDS 30.0%
TCCAAACATACCTTAAAGTT+TGG - Chr1:96604126-96604145 None:intergenic 30.0%
TCTTCATGACAAATTCAACT+AGG - Chr1:96605693-96605712 None:intergenic 30.0%
TGAAAAGAATAAAAGCTCGA+GGG + Chr1:96601847-96601866 MsG0180005826.01.T01:five_prime_UTR 30.0%
TGAAATGAAGAAAAGAAGGA+TGG - Chr1:96602316-96602335 None:intergenic 30.0%
TGTGAATTTCAAGCCAAAAT+GGG + Chr1:96608167-96608186 MsG0180005826.01.T01:CDS 30.0%
TTAAATATAACCACCGGTAA+TGG - Chr1:96603368-96603387 None:intergenic 30.0%
TTATTGCGTCAATAGCTTAA+GGG - Chr1:96607513-96607532 None:intergenic 30.0%
TTCATGAAAATGGAAACTCA+TGG - Chr1:96607842-96607861 None:intergenic 30.0%
TTGAGTGAATATAATCTGCT+GGG - Chr1:96607090-96607109 None:intergenic 30.0%
TTGTATAATGTTGATCCAAC+CGG - Chr1:96608085-96608104 None:intergenic 30.0%
TTTCATCCAAAAAAATGAGC+CGG - Chr1:96604751-96604770 None:intergenic 30.0%
! ACTTTCATTTTCACCCATAA+AGG - Chr1:96604022-96604041 None:intergenic 30.0%
! ATCATTTGATGTCTTGTTCA+GGG + Chr1:96606599-96606618 MsG0180005826.01.T01:intron 30.0%
! CATATTTTACTCCTTCGTTA+TGG + Chr1:96606294-96606313 MsG0180005826.01.T01:intron 30.0%
! CATTTTCATGAATGGAACAA+TGG + Chr1:96607850-96607869 MsG0180005826.01.T01:intron 30.0%
! GATTATTTTCTACTTGCCTT+TGG - Chr1:96607891-96607910 None:intergenic 30.0%
! GTCTTTAACTCTCTCTTTTA+CGG + Chr1:96607399-96607418 MsG0180005826.01.T01:intron 30.0%
! GTTTAAGATGGATAAACCAT+TGG + Chr1:96603776-96603795 MsG0180005826.01.T01:intron 30.0%
! TAATTTTGTAGAGAGAGCTT+TGG - Chr1:96604782-96604801 None:intergenic 30.0%
! TATCATTTGATGTCTTGTTC+AGG + Chr1:96606598-96606617 MsG0180005826.01.T01:intron 30.0%
! TCTTTAACTCTCTCTTTTAC+GGG + Chr1:96607400-96607419 MsG0180005826.01.T01:intron 30.0%
! TGAGTTTCCATTTTCATGAA+TGG + Chr1:96607842-96607861 MsG0180005826.01.T01:intron 30.0%
! TTTTGTGCTAATGCAATTTC+TGG + Chr1:96606151-96606170 MsG0180005826.01.T01:intron 30.0%
!! AACTTTAAGGTATGTTTGGA+TGG + Chr1:96604126-96604145 MsG0180005826.01.T01:intron 30.0%
!! ACCAAACTTTAAGGTATGTT+TGG + Chr1:96604122-96604141 MsG0180005826.01.T01:intron 30.0%
!! ACTTTAAGGTATGTTTGGAT+GGG + Chr1:96604127-96604146 MsG0180005826.01.T01:intron 30.0%
!! CGTTTTAATATCTTGTGCAA+TGG + Chr1:96606067-96606086 MsG0180005826.01.T01:intron 30.0%
!! GAATTGCTATTTCAGTGAAA+AGG + Chr1:96604183-96604202 MsG0180005826.01.T01:intron 30.0%
!! GATATTGATTCAAACCTCAT+TGG - Chr1:96605545-96605564 None:intergenic 30.0%
!!! AGAGTCTCATCTTGTTTTTT+TGG + Chr1:96606229-96606248 MsG0180005826.01.T01:CDS 30.0%
!!! ATCTTGTTTTTTTGGAAAGC+AGG + Chr1:96606237-96606256 MsG0180005826.01.T01:CDS 30.0%
!!! ATTCTAGTTTTTCTAGTAGC+TGG - Chr1:96605475-96605494 None:intergenic 30.0%
!!! CAAATATTTTTTTCCGCTTG+TGG + Chr1:96605816-96605835 MsG0180005826.01.T01:intron 30.0%
!!! CAGTTTTAGAAAAAAGAGAG+AGG + Chr1:96606947-96606966 MsG0180005826.01.T01:intron 30.0%
!!! CTGTTATTTTGGACAAGTTT+TGG - Chr1:96605439-96605458 None:intergenic 30.0%
!!! CTTAACACTAGCTTTTTTTC+TGG - Chr1:96603560-96603579 None:intergenic 30.0%
!!! GCTCATTTTTTTGGATGAAA+AGG + Chr1:96604751-96604770 MsG0180005826.01.T01:intron 30.0%
!!! TATTATTTTCAAGTGGAGCT+TGG + Chr1:96603869-96603888 MsG0180005826.01.T01:intron 30.0%
!!! TCTTGTTTTTTTGGAAAGCA+GGG + Chr1:96606238-96606257 MsG0180005826.01.T01:CDS 30.0%
!!! TTTTAATTTTACTCACCGGT+TGG + Chr1:96608067-96608086 MsG0180005826.01.T01:intron 30.0%
!!! TTTTTTCCGGCTCATTTTTT+TGG + Chr1:96604742-96604761 MsG0180005826.01.T01:intron 30.0%
AAAAAGAAGCCAATCCAAAC+GGG + Chr1:96605138-96605157 MsG0180005826.01.T01:intron 35.0%
AACACTGACATCAAACTTGT+TGG + Chr1:96604481-96604500 MsG0180005826.01.T01:CDS 35.0%
AAGTCCTTGAATATCCCTAA+AGG + Chr1:96603430-96603449 MsG0180005826.01.T01:CDS 35.0%
AATCAGAGACTAAAAGTTGG+AGG - Chr1:96607222-96607241 None:intergenic 35.0%
AATGAGGGGCTAAATAGTTA+AGG - Chr1:96606001-96606020 None:intergenic 35.0%
ACAAGTTCAAATAGTGCACA+AGG - Chr1:96607471-96607490 None:intergenic 35.0%
ACATTTGATATGACAGGATC+AGG - Chr1:96607260-96607279 None:intergenic 35.0%
AGACACAGGAGAAAAGAAAT+AGG - Chr1:96604543-96604562 None:intergenic 35.0%
AGGAAGTTGTTTATCCAAAC+AGG - Chr1:96602373-96602392 None:intergenic 35.0%
AGGTGTTTGGTAAAAAGTAG+CGG - Chr1:96603182-96603201 None:intergenic 35.0%
AGTAGTATTATGGTCCTGTT+TGG + Chr1:96602356-96602375 MsG0180005826.01.T01:intron 35.0%
ATGTTGAAACAGCAGTAGAA+AGG + Chr1:96607276-96607295 MsG0180005826.01.T01:intron 35.0%
ATTGGGTCTGAATCATGATT+TGG + Chr1:96605366-96605385 MsG0180005826.01.T01:intron 35.0%
CAGTTAACTTACCATAACGA+AGG - Chr1:96606308-96606327 None:intergenic 35.0%
CAGTTAAGTAATACCAACTG+TGG - Chr1:96605765-96605784 None:intergenic 35.0%
CCAATACGATGTATTCTGAT+CGG + Chr1:96607147-96607166 MsG0180005826.01.T01:intron 35.0%
CTGTGAATTTCAAGCCAAAA+TGG + Chr1:96608166-96608185 MsG0180005826.01.T01:CDS 35.0%
GAAATCACTGTGTATGATTC+GGG + Chr1:96604511-96604530 MsG0180005826.01.T01:intron 35.0%
GAGTCATGGTAATTTGAACA+TGG + Chr1:96603703-96603722 MsG0180005826.01.T01:intron 35.0%
GATGCCATTCACTTCAATTA+TGG - Chr1:96605165-96605184 None:intergenic 35.0%
GGAGATATCGAATATTCTTC+CGG - Chr1:96602068-96602087 None:intergenic 35.0%
GTGAAAAGAATAAAAGCTCG+AGG + Chr1:96601846-96601865 MsG0180005826.01.T01:five_prime_UTR 35.0%
GTGAATGGCATCTATATTCT+TGG + Chr1:96605173-96605192 MsG0180005826.01.T01:intron 35.0%
TACATCAGTTTAATGACTCG+AGG - Chr1:96606653-96606672 None:intergenic 35.0%
TAGAAGTAGAGACTTCATCA+TGG - Chr1:96601906-96601925 None:intergenic 35.0%
TATGCATAAACTACCAACAG+AGG - Chr1:96606278-96606297 None:intergenic 35.0%
TCAAATTACCATGACTCAGA+AGG - Chr1:96603700-96603719 None:intergenic 35.0%
TCATAGTTCTTGCATATGCA+CGG + Chr1:96603599-96603618 MsG0180005826.01.T01:intron 35.0%
TCATCGATGAGTTTCAAACA+AGG - Chr1:96606998-96607017 None:intergenic 35.0%
TCTTCTTCACCTAATAACGT+GGG + Chr1:96604641-96604660 MsG0180005826.01.T01:intron 35.0%
TGCTAACTTATTCCCATTAC+CGG + Chr1:96603352-96603371 MsG0180005826.01.T01:intron 35.0%
TGGCAATGCATGATTATCAT+AGG + Chr1:96605836-96605855 MsG0180005826.01.T01:intron 35.0%
TGTATGCATTCTATTCTTGG+AGG + Chr1:96606873-96606892 MsG0180005826.01.T01:intron 35.0%
TTACGAATGCAAACTTTGGA+TGG - Chr1:96604589-96604608 None:intergenic 35.0%
TTTGGGAAGATTTAGGTGTT+TGG - Chr1:96603195-96603214 None:intergenic 35.0%
! AAATATTTTGCACACAACGC+AGG - Chr1:96605958-96605977 None:intergenic 35.0%
! AACAGATAGTTGATACGCTA+GGG - Chr1:96603133-96603152 None:intergenic 35.0%
! ATCAGTTTTTGCGCTTATAG+TGG + Chr1:96602868-96602887 MsG0180005826.01.T01:intron 35.0%
! GCAGATTTTGTTACTCCTTA+TGG + Chr1:96606511-96606530 MsG0180005826.01.T01:intron 35.0%
! GCTCAAATGTTACTTGAAGT+AGG - Chr1:96602972-96602991 None:intergenic 35.0%
! TAACAGATAGTTGATACGCT+AGG - Chr1:96603134-96603153 None:intergenic 35.0%
! TACACCTTTAGGGATATTCA+AGG - Chr1:96603437-96603456 None:intergenic 35.0%
! TCTCCTTTTTCTTTTCGCTA+TGG + Chr1:96607983-96608002 MsG0180005826.01.T01:intron 35.0%
! TTTTTGCTAGGAAGCCTTAA+AGG - Chr1:96605298-96605317 None:intergenic 35.0%
!! AAGAAAGTTTTGTCCTCTGT+TGG + Chr1:96606262-96606281 MsG0180005826.01.T01:intron 35.0%
!! CTTTAAGGTATGTTTGGATG+GGG + Chr1:96604128-96604147 MsG0180005826.01.T01:intron 35.0%
!! GCAATTTCTGGTGTTGTAAT+TGG + Chr1:96606163-96606182 MsG0180005826.01.T01:intron 35.0%
!! TTAATGTTCTGAAGAGCACA+CGG - Chr1:96603462-96603481 None:intergenic 35.0%
!! TTTCTGGTGTTGTAATTGGT+AGG + Chr1:96606167-96606186 MsG0180005826.01.T01:intron 35.0%
!!! TTTTGGCTTGAAATTCACAG+TGG - Chr1:96608166-96608185 None:intergenic 35.0%
AAAGAATAAAAGCTCGAGGG+AGG + Chr1:96601850-96601869 MsG0180005826.01.T01:five_prime_UTR 40.0%
AAGCTATGTTGGATTCATGG+AGG + Chr1:96604435-96604454 MsG0180005826.01.T01:CDS 40.0%
ACAAGTCAAAGAGTCTCACA+AGG + Chr1:96602514-96602533 MsG0180005826.01.T01:intron 40.0%
ACACCAATTGTTCTGTTCAC+AGG + Chr1:96602693-96602712 MsG0180005826.01.T01:intron 40.0%
ACAGCAGTAGAAAGGTGAAA+TGG + Chr1:96607284-96607303 MsG0180005826.01.T01:intron 40.0%
AGAAGCAATGTGATTCTCTC+TGG + Chr1:96605733-96605752 MsG0180005826.01.T01:intron 40.0%
AGAAGGATGGTATACCATTG+AGG - Chr1:96602303-96602322 None:intergenic 40.0%
AGACCTGTGAACAGAACAAT+TGG - Chr1:96602699-96602718 None:intergenic 40.0%
AGAGAATCACATTGCTTCTG+TGG - Chr1:96605732-96605751 None:intergenic 40.0%
AGCTTGGCTGATCTTAATGA+GGG - Chr1:96606016-96606035 None:intergenic 40.0%
AGTTGATTACTTATCTGCCG+CGG + Chr1:96606190-96606209 MsG0180005826.01.T01:CDS 40.0%
ATGGATAAACCATTGGACGA+TGG + Chr1:96603783-96603802 MsG0180005826.01.T01:intron 40.0%
ATTGAGGAGACGCAAATCAA+GGG - Chr1:96602287-96602306 None:intergenic 40.0%
CACAAGCTATGTTGGATTCA+TGG + Chr1:96604432-96604451 MsG0180005826.01.T01:CDS 40.0%
CAGAAGCAGCAATATGACTA+AGG - Chr1:96606110-96606129 None:intergenic 40.0%
CAGCCTTAATTCGCTCATTT+GGG + Chr1:96606811-96606830 MsG0180005826.01.T01:intron 40.0%
CAGGAAATCATTCTTGTGGA+AGG + Chr1:96607046-96607065 MsG0180005826.01.T01:intron 40.0%
CCAAGTCAAGACAGAAGAAA+TGG - Chr1:96604710-96604729 None:intergenic 40.0%
CCATTTCTTCTGTCTTGACT+TGG + Chr1:96604707-96604726 MsG0180005826.01.T01:intron 40.0%
CCGATCAGAATACATCGTAT+TGG - Chr1:96607150-96607169 None:intergenic 40.0%
CTCTAACGAGTGACCTTTAT+GGG + Chr1:96604006-96604025 MsG0180005826.01.T01:intron 40.0%
CTCTTGCTACCAAAACAGAA+CGG + Chr1:96605206-96605225 MsG0180005826.01.T01:intron 40.0%
CTGCTCTCAAGCATGAAATT+TGG + Chr1:96603261-96603280 MsG0180005826.01.T01:intron 40.0%
CTTCTTCACCTAATAACGTG+GGG + Chr1:96604642-96604661 MsG0180005826.01.T01:intron 40.0%
GAACCCAAATGAGCGAATTA+AGG - Chr1:96606817-96606836 None:intergenic 40.0%
GAAGCAATGTGATTCTCTCT+GGG + Chr1:96605734-96605753 MsG0180005826.01.T01:intron 40.0%
GAAGCCTTAAAGGTCAACAA+AGG - Chr1:96605288-96605307 None:intergenic 40.0%
GATGAACCAATCGATAGTAG+TGG + Chr1:96606844-96606863 MsG0180005826.01.T01:intron 40.0%
GATGATCAATGCACTAACGA+AGG + Chr1:96607013-96607032 MsG0180005826.01.T01:intron 40.0%
GATTGAGAATCAAGCTCCAA+AGG + Chr1:96607872-96607891 MsG0180005826.01.T01:intron 40.0%
GCATCAGGAAATCATTCTTG+TGG + Chr1:96607042-96607061 MsG0180005826.01.T01:intron 40.0%
GTCTTCTTCACCTAATAACG+TGG + Chr1:96604640-96604659 MsG0180005826.01.T01:intron 40.0%
GTTAATGACCCCACGTTATT+AGG - Chr1:96604653-96604672 None:intergenic 40.0%
GTTGCACATACCAGTAATGT+TGG - Chr1:96602751-96602770 None:intergenic 40.0%
GTTTAATGACTCGAGGTATG+AGG - Chr1:96606646-96606665 None:intergenic 40.0%
TAACGAAGGTCAAATGCATC+AGG + Chr1:96607027-96607046 MsG0180005826.01.T01:intron 40.0%
TAACTTATTCCCATTACCGG+TGG + Chr1:96603355-96603374 MsG0180005826.01.T01:intron 40.0%
TAATCATGCATTGCCACAAG+CGG - Chr1:96605832-96605851 None:intergenic 40.0%
TATGCACCACTACTATCGAT+TGG - Chr1:96606853-96606872 None:intergenic 40.0%
TATGTTGGATTCATGGAGGA+TGG + Chr1:96604439-96604458 MsG0180005826.01.T01:CDS 40.0%
TATGTTTGGATGGGGAAGAT+TGG + Chr1:96604136-96604155 MsG0180005826.01.T01:intron 40.0%
TCAAATAGTGCACAAGGACT+TGG - Chr1:96607465-96607484 None:intergenic 40.0%
TCAGACCCAATATCTAATCG+AGG - Chr1:96605357-96605376 None:intergenic 40.0%
TCTCAGCCGTGTAAATGTTA+AGG + Chr1:96602831-96602850 MsG0180005826.01.T01:intron 40.0%
TCTTGCTACCAAAACAGAAC+GGG + Chr1:96605207-96605226 MsG0180005826.01.T01:intron 40.0%
TGAGCATATCTCCCAGAATA+AGG - Chr1:96602540-96602559 None:intergenic 40.0%
TGATTCAAACCCATATCCAC+TGG + Chr1:96605923-96605942 MsG0180005826.01.T01:intron 40.0%
TTAAGGGAATTTATGCGCAC+AGG - Chr1:96607497-96607516 None:intergenic 40.0%
TTATCATGACACTAGGTCTG+TGG - Chr1:96606697-96606716 None:intergenic 40.0%
TTCGCTATGGAATCTCTTTG+CGG + Chr1:96607996-96608015 MsG0180005826.01.T01:intron 40.0%
! AATGGTTTGCCAGTGGATAT+GGG - Chr1:96605935-96605954 None:intergenic 40.0%
! AGAATTTGAAGTGCGCAATG+AGG - Chr1:96604685-96604704 None:intergenic 40.0%
! AGCTTTGGCTTCTAACTGTT+TGG - Chr1:96608254-96608273 None:intergenic 40.0%
! CATGATTTGGAGGAGATTGT+GGG + Chr1:96605379-96605398 MsG0180005826.01.T01:intron 40.0%
! CTGCACTGCAAAATTGGTTT+CGG - Chr1:96605637-96605656 None:intergenic 40.0%
! GCAAAGTAGTGAACCCATTT+TGG - Chr1:96608183-96608202 None:intergenic 40.0%
! GGTGTTTTCAAAAGCAGTGA+TGG + Chr1:96606549-96606568 MsG0180005826.01.T01:intron 40.0%
! GTACTCGGTTTAGTCTTTCA+TGG - Chr1:96604815-96604834 None:intergenic 40.0%
! TCATGATTTGGAGGAGATTG+TGG + Chr1:96605378-96605397 MsG0180005826.01.T01:intron 40.0%
! TTCATTTGGCTTAGCCTACT+TGG + Chr1:96605256-96605275 MsG0180005826.01.T01:intron 40.0%
AAACAGAACGGGTGAAACAC+AGG + Chr1:96605218-96605237 MsG0180005826.01.T01:intron 45.0%
AAACCATTGGACGATGGAGA+AGG + Chr1:96603789-96603808 MsG0180005826.01.T01:intron 45.0%
AAACCGAGTACACATCTTCC+AGG + Chr1:96604824-96604843 MsG0180005826.01.T01:intron 45.0%
AACCATTGGACGATGGAGAA+GGG + Chr1:96603790-96603809 MsG0180005826.01.T01:intron 45.0%
AAGGACTTGGCAAACAAACG+TGG - Chr1:96607452-96607471 None:intergenic 45.0%
AATTATGGGCCCGTTTGGAT+TGG - Chr1:96605150-96605169 None:intergenic 45.0%
ACTTCAATTATGGGCCCGTT+TGG - Chr1:96605155-96605174 None:intergenic 45.0%
ATGAAGTCCACTGAGTTGCA+CGG + Chr1:96607173-96607192 MsG0180005826.01.T01:intron 45.0%
CATTGAGGAGACGCAAATCA+AGG - Chr1:96602288-96602307 None:intergenic 45.0%
CCAAATGAGCGAATTAAGGC+TGG - Chr1:96606813-96606832 None:intergenic 45.0%
CCAGCCTTAATTCGCTCATT+TGG + Chr1:96606810-96606829 MsG0180005826.01.T01:intron 45.0%
CCATTTGCTCATGGGACATA+GGG + Chr1:96604936-96604955 MsG0180005826.01.T01:intron 45.0%
CCGTGGAACATCAACCAAAA+GGG - Chr1:96602724-96602743 None:intergenic 45.0%
CCTATGTCCCATGAGCAAAT+GGG - Chr1:96604938-96604957 None:intergenic 45.0%
CTATGTCCCATGAGCAAATG+GGG - Chr1:96604937-96604956 None:intergenic 45.0%
CTTCTGTGGAAGATCTGTAG+AGG - Chr1:96605718-96605737 None:intergenic 45.0%
CTTTGCCTGCACTGCAAAAT+TGG - Chr1:96605643-96605662 None:intergenic 45.0%
GAGCTTGGCTGATCTTAATG+AGG - Chr1:96606017-96606036 None:intergenic 45.0%
GCACAAAAATGGCTTCCACT+AGG - Chr1:96606139-96606158 None:intergenic 45.0%
GCCTCCAAATCTGCAAAACT+TGG + Chr1:96605579-96605598 MsG0180005826.01.T01:intron 45.0%
GCTCTAACGAGTGACCTTTA+TGG + Chr1:96604005-96604024 MsG0180005826.01.T01:intron 45.0%
GCTTGGCTGATCTTAATGAG+GGG - Chr1:96606015-96606034 None:intergenic 45.0%
GGGCCCATAATTGAAGTGAA+TGG + Chr1:96605158-96605177 MsG0180005826.01.T01:intron 45.0%
GTGCAATGGAACAACTTCAG+CGG + Chr1:96606081-96606100 MsG0180005826.01.T01:intron 45.0%
TACCGAGTTAACATAAGCCG+CGG - Chr1:96606210-96606229 None:intergenic 45.0%
TATTGACAAGTGGCAGAGCT+TGG - Chr1:96606032-96606051 None:intergenic 45.0%
TCATGGAGGATGGTGCAAAA+TGG + Chr1:96604449-96604468 MsG0180005826.01.T01:CDS 45.0%
TGACACTAGGTCTGTGGTTA+CGG - Chr1:96606691-96606710 None:intergenic 45.0%
TGGCAGAGCAACACTGTAAT+TGG - Chr1:96608146-96608165 None:intergenic 45.0%
! AAGGGTTAGCACACTTCTTG+TGG + Chr1:96602128-96602147 MsG0180005826.01.T01:CDS 45.0%
! ACTCTCTCTTTTACGGGCTT+AGG + Chr1:96607406-96607425 MsG0180005826.01.T01:intron 45.0%
! CGAAACCAATTTTGCAGTGC+AGG + Chr1:96605635-96605654 MsG0180005826.01.T01:intron 45.0%
! CTGCTTCTGTCTTTTCCTAG+TGG + Chr1:96606121-96606140 MsG0180005826.01.T01:intron 45.0%
! CTTGCTGTCAGCATGAAGAA+TGG + Chr1:96602151-96602170 MsG0180005826.01.T01:CDS 45.0%
! CTTTGTTTGGAACTTCCACC+TGG - Chr1:96604845-96604864 None:intergenic 45.0%
! GAATGGTTTGCCAGTGGATA+TGG - Chr1:96605936-96605955 None:intergenic 45.0%
! GCAGCCAAGTTTTGCAGATT+TGG - Chr1:96605586-96605605 None:intergenic 45.0%
! GCCAAGTTTTGCAGATTTGG+AGG - Chr1:96605583-96605602 None:intergenic 45.0%
! GGGTCTGAATCATGATTTGG+AGG + Chr1:96605369-96605388 MsG0180005826.01.T01:intron 45.0%
! GTAGCGGAGATAGCTAATAG+TGG - Chr1:96603166-96603185 None:intergenic 45.0%
! GTGTTTCACCCGTTCTGTTT+TGG - Chr1:96605218-96605237 None:intergenic 45.0%
! GTTCACAGGTCTTACCCTTT+TGG + Chr1:96602707-96602726 MsG0180005826.01.T01:intron 45.0%
! TGCAGATTTGGAGGCTTTTC+AGG - Chr1:96605574-96605593 None:intergenic 45.0%
! TTTTGCACACAACGCAGGAA+TGG - Chr1:96605953-96605972 None:intergenic 45.0%
!! AGTCTCACAAGGCCTTATTC+TGG + Chr1:96602525-96602544 MsG0180005826.01.T01:intron 45.0%
!! CCCTTTTGGTTGATGTTCCA+CGG + Chr1:96602721-96602740 MsG0180005826.01.T01:CDS 45.0%
!! CCTTTTGGTTGATGTTCCAC+GGG + Chr1:96602722-96602741 MsG0180005826.01.T01:CDS 45.0%
!! CTTGATTTGCGTCTCCTCAA+TGG + Chr1:96602286-96602305 MsG0180005826.01.T01:CDS 45.0%
!! GTCTCACAAGGCCTTATTCT+GGG + Chr1:96602526-96602545 MsG0180005826.01.T01:intron 45.0%
!! TGGACAAGTTTTGGTGTGCT+AGG - Chr1:96605430-96605449 None:intergenic 45.0%
AACAAGGAGAGTTTCGTCGC+CGG - Chr1:96602020-96602039 None:intergenic 50.0%
AAGAATGGCTCACGCGCTAA+TGG + Chr1:96602166-96602185 MsG0180005826.01.T01:CDS 50.0%
AAGGTCACTCGTTAGAGCCA+TGG - Chr1:96604003-96604022 None:intergenic 50.0%
ACCATTGGACGATGGAGAAG+GGG + Chr1:96603791-96603810 MsG0180005826.01.T01:intron 50.0%
AGACGTGAAGTCTACGATGC+CGG + Chr1:96602046-96602065 MsG0180005826.01.T01:CDS 50.0%
AGATGCTGCTACATGAGTCG+TGG - Chr1:96603518-96603537 None:intergenic 50.0%
AGCACACGGCTTACACCTTT+AGG - Chr1:96603448-96603467 None:intergenic 50.0%
ATGAGCACCAAGCTGCATAG+CGG - Chr1:96602194-96602213 None:intergenic 50.0%
CAATTGCTTGCCTCTCAGGT+TGG + Chr1:96607107-96607126 MsG0180005826.01.T01:intron 50.0%
CACTCAATTGCTTGCCTCTC+AGG + Chr1:96607103-96607122 MsG0180005826.01.T01:intron 50.0%
CCACCTGGAAGATGTGTACT+CGG - Chr1:96604830-96604849 None:intergenic 50.0%
CCCATTTGCTCATGGGACAT+AGG + Chr1:96604935-96604954 MsG0180005826.01.T01:intron 50.0%
CCCGTGGAACATCAACCAAA+AGG - Chr1:96602725-96602744 None:intergenic 50.0%
CCCTATGTCCCATGAGCAAA+TGG - Chr1:96604939-96604958 None:intergenic 50.0%
CTTCACGTCTTGGAGGAACA+AGG - Chr1:96602036-96602055 None:intergenic 50.0%
GACACTAGGTCTGTGGTTAC+GGG - Chr1:96606690-96606709 None:intergenic 50.0%
GACATAGGGACCGTTTGGAT+TGG + Chr1:96604950-96604969 MsG0180005826.01.T01:intron 50.0%
GATCATACCGTGCAACTCAG+TGG - Chr1:96607183-96607202 None:intergenic 50.0%
GCACACGGCTTACACCTTTA+GGG - Chr1:96603447-96603466 None:intergenic 50.0%
GCATCGTAGACTTCACGTCT+TGG - Chr1:96602046-96602065 None:intergenic 50.0%
GGGTGCATCAACATGAGTAC+CGG - Chr1:96602218-96602237 None:intergenic 50.0%
GGTACTCATGTTGATGCACC+CGG + Chr1:96602217-96602236 MsG0180005826.01.T01:CDS 50.0%
GTGGAAGGCCTTAAGCTAGA+TGG + Chr1:96607061-96607080 MsG0180005826.01.T01:intron 50.0%
TAGAAAGGTGAAATGGCCGC+AGG + Chr1:96607291-96607310 MsG0180005826.01.T01:intron 50.0%
TCAGAACCAACCAACCTGAG+AGG - Chr1:96607120-96607139 None:intergenic 50.0%
TCGTAGACTTCACGTCTTGG+AGG - Chr1:96602043-96602062 None:intergenic 50.0%
TGCCGCGGCTTATGTTAACT+CGG + Chr1:96606205-96606224 MsG0180005826.01.T01:CDS 50.0%
TGGATGGGGAAGATTGGACA+GGG + Chr1:96604142-96604161 MsG0180005826.01.T01:intron 50.0%
TTGCAGCCCCATTTGCTCAT+GGG + Chr1:96604928-96604947 MsG0180005826.01.T01:intron 50.0%
TTGGATGGGGAAGATTGGAC+AGG + Chr1:96604141-96604160 MsG0180005826.01.T01:intron 50.0%
TTTGCAGCCCCATTTGCTCA+TGG + Chr1:96604927-96604946 MsG0180005826.01.T01:intron 50.0%
! CGATACCGCTGGCTATCTTT+GGG - Chr1:96607328-96607347 None:intergenic 50.0%
! TCGATACCGCTGGCTATCTT+TGG - Chr1:96607329-96607348 None:intergenic 50.0%
! TGGACTGCTAGTCTGCACAT+AGG + Chr1:96603723-96603742 MsG0180005826.01.T01:intron 50.0%
!! ATGCAGCTTGGTGCTCATAC+CGG + Chr1:96602196-96602215 MsG0180005826.01.T01:CDS 50.0%
!! TCTCAGGTTGGTTGGTTCTG+AGG + Chr1:96607119-96607138 MsG0180005826.01.T01:intron 50.0%
AAGCTCCTTGTCGATACCGC+TGG - Chr1:96607339-96607358 None:intergenic 55.0%
AATGGCTCCGCTATGCAGCT+TGG + Chr1:96602184-96602203 MsG0180005826.01.T01:CDS 55.0%
ACCCCTTCTCCATCGTCCAA+TGG - Chr1:96603795-96603814 None:intergenic 55.0%
ACCTCATTGGAACCGACGCT+AGG - Chr1:96605532-96605551 None:intergenic 55.0%
ATTGGACGATGGAGAAGGGG+TGG + Chr1:96603794-96603813 MsG0180005826.01.T01:intron 55.0%
CATGGGACATAGGGACCGTT+TGG + Chr1:96604945-96604964 MsG0180005826.01.T01:intron 55.0%
CCACGGGACACCAACATTAC+TGG + Chr1:96602738-96602757 MsG0180005826.01.T01:CDS 55.0%
CCGAGTACACATCTTCCAGG+TGG + Chr1:96604827-96604846 MsG0180005826.01.T01:intron 55.0%
CCTCATTGGAACCGACGCTA+GGG - Chr1:96605531-96605550 None:intergenic 55.0%
CCTTCCTTCGACTCCCAAAC+CGG - Chr1:96602112-96602131 None:intergenic 55.0%
CGTAGCCCAAAGATAGCCAG+CGG + Chr1:96607320-96607339 MsG0180005826.01.T01:intron 55.0%
CTAGGTCTGTGGTTACGGGT+CGG - Chr1:96606686-96606705 None:intergenic 55.0%
GGAGGATGGTGCAAAATGGC+TGG + Chr1:96604453-96604472 MsG0180005826.01.T01:CDS 55.0%
GGATGGGGAAGATTGGACAG+GGG + Chr1:96604143-96604162 MsG0180005826.01.T01:intron 55.0%
GGATGGTGCAAAATGGCTGG+TGG + Chr1:96604456-96604475 MsG0180005826.01.T01:CDS 55.0%
GGGAAGATTGGACAGGGGAA+GGG + Chr1:96604148-96604167 MsG0180005826.01.T01:intron 55.0%
GGGTTGCACCTTCTGAGTCA+TGG + Chr1:96603689-96603708 MsG0180005826.01.T01:intron 55.0%
TCTCTGGGCTCTTCCACAGT+TGG + Chr1:96605749-96605768 MsG0180005826.01.T01:intron 55.0%
TTGGAACCGACGCTAGGGAA+TGG - Chr1:96605526-96605545 None:intergenic 55.0%
TTGGACGATGGAGAAGGGGT+GGG + Chr1:96603795-96603814 MsG0180005826.01.T01:intron 55.0%
TTGGGCTACGTTGCATCCTG+CGG - Chr1:96607310-96607329 None:intergenic 55.0%
! ACGCAGGAATGGTTTGCCAG+TGG - Chr1:96605942-96605961 None:intergenic 55.0%
! CAACTCGGGGGTGTACTTGT+GGG - Chr1:96602089-96602108 None:intergenic 55.0%
! CCAGTAATGTTGGTGTCCCG+TGG - Chr1:96602741-96602760 None:intergenic 55.0%
! CGGTTTGGGAGTCGAAGGAA+GGG + Chr1:96602110-96602129 MsG0180005826.01.T01:CDS 55.0%
! CTGGGACGCCATCTAGCTTA+AGG - Chr1:96607072-96607091 None:intergenic 55.0%
!! GATAGCCAGCGGTATCGACA+AGG + Chr1:96607331-96607350 MsG0180005826.01.T01:intron 55.0%
!! TGCTTGCCTCTCAGGTTGGT+TGG + Chr1:96607111-96607130 MsG0180005826.01.T01:intron 55.0%
ACCGCTTATCCTTCCGTCCC+GGG + Chr1:96601968-96601987 MsG0180005826.01.T01:CDS 60.0%
ACTCCCAAACCGGCAACTCG+GGG - Chr1:96602102-96602121 None:intergenic 60.0%
AGGATAAGCGGTGGAGGCTG+CGG - Chr1:96601960-96601979 None:intergenic 60.0%
CAAGTACACCCCCGAGTTGC+CGG + Chr1:96602090-96602109 MsG0180005826.01.T01:CDS 60.0%
CACCGCTTATCCTTCCGTCC+CGG + Chr1:96601967-96601986 MsG0180005826.01.T01:CDS 60.0%
CCTGAGCCATTCCCTAGCGT+CGG + Chr1:96605517-96605536 MsG0180005826.01.T01:intron 60.0%
CGACTCCCAAACCGGCAACT+CGG - Chr1:96602104-96602123 None:intergenic 60.0%
GACGGAAGGATAAGCGGTGG+AGG - Chr1:96601966-96601985 None:intergenic 60.0%
GACTCCCAAACCGGCAACTC+GGG - Chr1:96602103-96602122 None:intergenic 60.0%
GGGGAAGATTGGACAGGGGA+AGG + Chr1:96604147-96604166 MsG0180005826.01.T01:intron 60.0%
! GCAACTCGGGGGTGTACTTG+TGG - Chr1:96602090-96602109 None:intergenic 60.0%
!! CCCTAGCGTCGGTTCCAATG+AGG + Chr1:96605528-96605547 MsG0180005826.01.T01:intron 60.0%
!! CCGGTTTGGGAGTCGAAGGA+AGG + Chr1:96602109-96602128 MsG0180005826.01.T01:CDS 60.0%
!! GTTGCCGGTTTGGGAGTCGA+AGG + Chr1:96602105-96602124 MsG0180005826.01.T01:CDS 60.0%
ATGGAGAAGGGGTGGGCGGT+AGG + Chr1:96603802-96603821 MsG0180005826.01.T01:intron 65.0%
CCGACGCTAGGGAATGGCTC+AGG - Chr1:96605520-96605539 None:intergenic 65.0%
CGGGACGGAAGGATAAGCGG+TGG - Chr1:96601969-96601988 None:intergenic 65.0%
CTCCCAAACCGGCAACTCGG+GGG - Chr1:96602101-96602120 None:intergenic 65.0%
GACGATGGAGAAGGGGTGGG+CGG + Chr1:96603798-96603817 MsG0180005826.01.T01:intron 65.0%
GCCCGGGACGGAAGGATAAG+CGG - Chr1:96601972-96601991 None:intergenic 65.0%
GGAGAGTTTCGTCGCCGGTG+AGG - Chr1:96602015-96602034 None:intergenic 65.0%
! ACACCCCCGAGTTGCCGGTT+TGG + Chr1:96602095-96602114 MsG0180005826.01.T01:CDS 65.0%
!! CACCCCCGAGTTGCCGGTTT+GGG + Chr1:96602096-96602115 MsG0180005826.01.T01:CDS 65.0%
AAGGGGTGGGCGGTAGGCAG+AGG + Chr1:96603808-96603827 MsG0180005826.01.T01:intron 70.0%
AGCGGTGGAGGCTGCGGCGA+AGG - Chr1:96601954-96601973 None:intergenic 75.0%
AGTCGCCGGCGTCAAGGCCC+GGG - Chr1:96601988-96602007 None:intergenic 75.0%
CAGTCGCCGGCGTCAAGGCC+CGG - Chr1:96601989-96602008 None:intergenic 75.0%
GCCGGCGACTGTGGCCTCAC+CGG + Chr1:96601998-96602017 MsG0180005826.01.T01:CDS 75.0%
GCCGGTGAGGCCACAGTCGC+CGG - Chr1:96602002-96602021 None:intergenic 75.0%
GCGTCAAGGCCCGGGACGGA+AGG - Chr1:96601980-96601999 None:intergenic 75.0%
GGCCACAGTCGCCGGCGTCA+AGG - Chr1:96601994-96602013 None:intergenic 75.0%
GGCCTTGACGCCGGCGACTG+TGG + Chr1:96601989-96602008 MsG0180005826.01.T01:CDS 75.0%
TCCGTCCCGGGCCTTGACGC+CGG + Chr1:96601980-96601999 MsG0180005826.01.T01:CDS 75.0%
! GCCGGCGTCAAGGCCCGGGA+CGG - Chr1:96601984-96602003 None:intergenic 80.0%
Chromosome Type Strat End Strand Name
Chr1 gene 96601813 96608275 96601813 ID=MsG0180005826.01;Name=MsG0180005826.01
Chr1 mRNA 96601813 96608275 96601813 ID=MsG0180005826.01.T01;Parent=MsG0180005826.01;Name=MsG0180005826.01.T01;_AED=0.50;_eAED=0.56;_QI=92|0.8|0.83|1|1|1|6|0|270
Chr1 exon 96601813 96602307 96601813 ID=MsG0180005826.01.T01:exon:19498;Parent=MsG0180005826.01.T01
Chr1 exon 96602715 96602759 96602715 ID=MsG0180005826.01.T01:exon:19499;Parent=MsG0180005826.01.T01
Chr1 exon 96603419 96603491 96603419 ID=MsG0180005826.01.T01:exon:19500;Parent=MsG0180005826.01.T01
Chr1 exon 96604405 96604502 96604405 ID=MsG0180005826.01.T01:exon:19501;Parent=MsG0180005826.01.T01
Chr1 exon 96606189 96606259 96606189 ID=MsG0180005826.01.T01:exon:19502;Parent=MsG0180005826.01.T01
Chr1 exon 96608153 96608275 96608153 ID=MsG0180005826.01.T01:exon:19503;Parent=MsG0180005826.01.T01
Chr1 five_prime_UTR 96601813 96601904 96601813 ID=MsG0180005826.01.T01:five_prime_utr;Parent=MsG0180005826.01.T01
Chr1 CDS 96601905 96602307 96601905 ID=MsG0180005826.01.T01:cds;Parent=MsG0180005826.01.T01
Chr1 CDS 96602715 96602759 96602715 ID=MsG0180005826.01.T01:cds;Parent=MsG0180005826.01.T01
Chr1 CDS 96603419 96603491 96603419 ID=MsG0180005826.01.T01:cds;Parent=MsG0180005826.01.T01
Chr1 CDS 96604405 96604502 96604405 ID=MsG0180005826.01.T01:cds;Parent=MsG0180005826.01.T01
Chr1 CDS 96606189 96606259 96606189 ID=MsG0180005826.01.T01:cds;Parent=MsG0180005826.01.T01
Chr1 CDS 96608153 96608275 96608153 ID=MsG0180005826.01.T01:cds;Parent=MsG0180005826.01.T01
Gene Sequence

>MsG0180005826.01.T01

ATGATGAAGTCTCTACTTCTATTTGCTGCGTTTCTCTCTGCGATTTCCTTCGCCGCAGCCTCCACCGCTTATCCTTCCGTCCCGGGCCTTGACGCCGGCGACTGTGGCCTCACCGGCGACGAAACTCTCCTTGTTCCTCCAAGACGTGAAGTCTACGATGCCGGAAGAATATTCGATATCTCCCACAAGTACACCCCCGAGTTGCCGGTTTGGGAGTCGAAGGAAGGGTTAGCACACTTCTTGTGGCTTGCTGTCAGCATGAAGAATGGCTCACGCGCTAATGGCTCCGCTATGCAGCTTGGTGCTCATACCGGTACTCATGTTGATGCACCCGGTCATTTCTATGATAATTACTTTGATGCTGGATTCGATGTTGATTCCCTTGATTTGCGTCTCCTCAATGGTCTTACCCTTTTGGTTGATGTTCCACGGGACACCAACATTACTGCTGAAGTTATGAAGTCCTTGAATATCCCTAAAGGTGTAAGCCGTGTGCTCTTCAGAACATTAAATACTGACAGGCGGCTTATGTTTAAGAAGAAATTTGACACAAGCTATGTTGGATTCATGGAGGATGGTGCAAAATGGCTGGTGGAGAACACTGACATCAAACTTGTTGGAGTTGATTACTTATCTGCCGCGGCTTATGTTAACTCGGTAGAGTCTCATCTTGTTTTTTTGGAAAGCAGGTGTTGCTCTGCCACTGTGAATTTCAAGCCAAAATGGGTTCACTACTTTGCTAACAAAGTAGTGAACTATTGCGAACTCTTGCGAACTATTTTGAAACACCAAACAGTTAGAAGCCAAAGCTAA
Protein sequence

>MsG0180005826.01.T01

MMKSLLLFAAFLSAISFAAASTAYPSVPGLDAGDCGLTGDETLLVPPRREVYDAGRIFDISHKYTPELPVWESKEGLAHFLWLAVSMKNGSRANGSAMQLGAHTGTHVDAPGHFYDNYFDAGFDVDSLDLRLLNGLTLLVDVPRDTNITAEVMKSLNIPKGVSRVLFRTLNTDRRLMFKKKFDTSYVGFMEDGAKWLVENTDIKLVGVDYLSAAAYVNSVESHLVFLESRCCSATVNFKPKWVHYFANKVVNYCELLRTILKHQTVRSQS*