AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0480023936.01


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0480023936.01.T01 MTR_8g105250 100.000 319 0 0 4 322 2 320 0.0 661
MsG0480023936.01.T01 MTR_4g064260 56.550 313 122 3 11 321 89 389 1.87e-121 354
MsG0480023936.01.T01 MTR_4g064330 55.238 315 127 2 9 321 84 386 7.40e-118 345
MsG0480023936.01.T01 MTR_4g064300 54.839 310 126 3 14 321 122 419 9.32e-115 338
MsG0480023936.01.T01 MTR_5g086350 38.122 181 85 4 34 191 90 266 1.56e-28 115
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0480023936.01.T01 AT2G21270 76.308 325 70 5 1 322 20 340 1.09e-174 488
MsG0480023936.01.T01 AT2G21270 76.708 322 68 5 4 322 2 319 5.57e-174 485
MsG0480023936.01.T01 AT2G21270 76.708 322 68 5 4 322 2 319 5.57e-174 485
MsG0480023936.01.T01 AT2G21270 76.708 322 68 5 4 322 2 319 5.57e-174 485
MsG0480023936.01.T01 AT2G21270 76.708 322 68 5 4 322 2 319 5.57e-174 485
MsG0480023936.01.T01 AT4G38930 70.000 320 89 2 4 322 2 315 3.61e-164 460
MsG0480023936.01.T01 AT4G38930 70.000 320 89 2 4 322 2 315 3.61e-164 460
MsG0480023936.01.T01 AT4G38930 70.938 320 82 4 4 322 2 311 5.96e-164 459
MsG0480023936.01.T01 AT4G38930 70.938 320 82 4 4 322 2 311 5.96e-164 459
MsG0480023936.01.T01 AT2G29070 60.635 315 113 5 12 322 5 312 1.13e-135 387
MsG0480023936.01.T01 AT2G29070 59.582 287 105 5 40 322 1 280 2.53e-118 342
MsG0480023936.01.T01 AT2G29070 51.813 193 82 5 134 322 11 196 3.13e-53 173
MsG0480023936.01.T01 AT4G15420 40.123 162 88 4 34 186 90 251 5.76e-27 111
MsG0480023936.01.T01 AT4G15420 40.123 162 88 4 34 186 213 374 6.83e-27 111

Find 106 sgRNAs with CRISPR-Local

Find 376 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTTATCTTCTTCTTTCTCTT+TGG 0.145615 4:-91442831 None:intergenic
CACAAAGTAATAATAATTTA+AGG 0.192642 4:-91443053 None:intergenic
CTCCACCAGTTTCTTCTTCC+GGG 0.205032 4:+91442523 MsG0480023936.01.T01:CDS
GATGCAACCCTTTACTTTAA+AGG 0.205872 4:+91443107 MsG0480023936.01.T01:three_prime_UTR
CGTGGAGCAACGGGCCTTTC+AGG 0.207292 4:-91441632 None:intergenic
AAGAAGTGGTATTACCTTTC+CGG 0.212674 4:-91442676 None:intergenic
CCGGGAAGAAGTATTCTTTA+AGG 0.227291 4:+91442867 MsG0480023936.01.T01:CDS
CGTCTCCCAGATCCAGTAAA+TGG 0.228162 4:-91442471 None:intergenic
CCTCCACCAGTTTCTTCTTC+CGG 0.229434 4:+91442522 MsG0480023936.01.T01:CDS
CCAAAGTTCAACCCATTTAC+TGG 0.248848 4:+91442459 MsG0480023936.01.T01:CDS
TTATCTTCTTCTTTCTCTTT+GGG 0.250840 4:-91442830 None:intergenic
GGCAAACCATTACCAGCTTC+TGG 0.251775 4:-91441671 None:intergenic
ACCAGCTTCTGGGGCCTTTC+CGG 0.257803 4:-91441660 None:intergenic
TTCAGGTTCCTTGTAATCTA+AGG 0.276898 4:-91441615 None:intergenic
GCCTCACACAAAAGACTTCT+TGG 0.277768 4:+91439469 MsG0480023936.01.T01:CDS
TTCAACCCATTTACTGGATC+TGG 0.281619 4:+91442465 MsG0480023936.01.T01:CDS
GGTTTCTCATTGTGGTGTTC+TGG 0.292912 4:+91439206 MsG0480023936.01.T01:CDS
CCGGTCTCTTTACCGCGGTT+TGG 0.328464 4:-91442657 None:intergenic
ATGCAACCCTTTACTTTAAA+GGG 0.338587 4:+91443108 MsG0480023936.01.T01:three_prime_UTR
ACTCAGGGCAAGCTTGTGTT+TGG 0.343149 4:+91442627 MsG0480023936.01.T01:CDS
GCATGATATACATGCCATAC+TGG 0.346272 4:+91439247 MsG0480023936.01.T01:CDS
TTTGTCACCACTTTCAAGTT+GGG 0.347179 4:-91438901 None:intergenic
CGGGAAGAAGTATTCTTTAA+GGG 0.362589 4:+91442868 MsG0480023936.01.T01:CDS
AAAAGGCCCTTTAAAGTAAA+GGG 0.371200 4:-91443114 None:intergenic
ACAAGCTTGCCCTGAGTTTG+AGG 0.372265 4:-91442621 None:intergenic
AACTTTGGTTCAGTTTCAGC+AGG 0.376076 4:-91442444 None:intergenic
AGCAGCAGGATTCTTGTCCT+TGG 0.380093 4:-91442547 None:intergenic
AACTTAACATATGTTCCCTT+TGG 0.397023 4:-91439443 None:intergenic
CCTTAAAGAATACTTCTTCC+CGG 0.399493 4:-91442867 None:intergenic
TAAAAGGCCCTTTAAAGTAA+AGG 0.401473 4:-91443115 None:intergenic
GCAAACCATTACCAGCTTCT+GGG 0.410537 4:-91441670 None:intergenic
CCGGCAGAACGTGGAGCAAC+GGG 0.425151 4:-91441641 None:intergenic
GACTACTGGAGATAGCATTA+TGG 0.427680 4:+91441490 MsG0480023936.01.T01:CDS
CCAGTAAATGGGTTGAACTT+TGG 0.434917 4:-91442459 None:intergenic
CGCCCCGCCCTTAGATTACA+AGG 0.435875 4:+91441607 MsG0480023936.01.T01:CDS
CTTGGATATTTCCAATCCTA+AGG 0.447761 4:+91439487 MsG0480023936.01.T01:CDS
AATGAACACGTATTCTTCTC+TGG 0.449226 4:+91443076 MsG0480023936.01.T01:three_prime_UTR
CTCAGGGCAAGCTTGTGTTT+GGG 0.462423 4:+91442628 MsG0480023936.01.T01:CDS
GACTCACATGGCCTTAGGAT+TGG 0.462854 4:-91439498 None:intergenic
AAGTAATGCTCCTCAAACTC+AGG 0.463360 4:+91442611 MsG0480023936.01.T01:CDS
TCGTAATGCTGCTGCTGAGC+GGG 0.469762 4:+91439185 MsG0480023936.01.T01:CDS
GATAAGTTTCAGCCTTTCAC+CGG 0.469983 4:+91442848 MsG0480023936.01.T01:CDS
GCCGGAAAGGCCCCAGAAGC+TGG 0.470690 4:+91441659 MsG0480023936.01.T01:CDS
ACATCGACTCACATGGCCTT+AGG 0.479482 4:-91439503 None:intergenic
CTCAATGATGCTTATAGCAT+TGG 0.484222 4:-91441564 None:intergenic
GTTCCTTGTAATCTAAGGGC+GGG 0.489115 4:-91441610 None:intergenic
AGGATTCTTGTCCTTGGACC+CGG 0.493138 4:-91442541 None:intergenic
GTCTCCCAGATCCAGTAAAT+GGG 0.494698 4:-91442470 None:intergenic
TACTGGATCTGGGAGACGCT+TGG 0.495783 4:+91442476 MsG0480023936.01.T01:CDS
TTGTCACCACTTTCAAGTTG+GGG 0.497338 4:-91438900 None:intergenic
TCTTCTTCTTTCTCTTTGGG+TGG 0.497605 4:-91442827 None:intergenic
TCAGGTTCCTTGTAATCTAA+GGG 0.497668 4:-91441614 None:intergenic
TGCTCCACGTTCTGCCGGAA+AGG 0.501088 4:+91441646 MsG0480023936.01.T01:CDS
CCCGTTGCTCCACGTTCTGC+CGG 0.501489 4:+91441641 MsG0480023936.01.T01:CDS
TTGGACCCGGAAGAAGAAAC+TGG 0.507831 4:-91442528 None:intergenic
ATAACTAACCTAGACGATCA+AGG 0.507878 4:-91439030 None:intergenic
GTATTCTTCTCTGGAGCAAA+GGG 0.508926 4:+91443085 MsG0480023936.01.T01:three_prime_UTR
TTCGATGGATATGGATATCA+CGG 0.509344 4:+91438539 MsG0480023936.01.T01:CDS
TTACTTCGTTGGCCTGTGCA+TGG 0.513408 4:+91442937 MsG0480023936.01.T01:three_prime_UTR
GAATACTTCTTCCCGGTGAA+AGG 0.517126 4:-91442860 None:intergenic
TCCGGCAGAACGTGGAGCAA+CGG 0.519164 4:-91441642 None:intergenic
CCTAGACGATCAAGGGCTGA+TGG 0.520566 4:-91439022 None:intergenic
TCAACCCATTTACTGGATCT+GGG 0.520842 4:+91442466 MsG0480023936.01.T01:CDS
CTGGAGTTCATTGCTGAGGA+AGG 0.523879 4:+91439225 MsG0480023936.01.T01:CDS
AGTTTCTTCTTCCGGGTCCA+AGG 0.526442 4:+91442530 MsG0480023936.01.T01:CDS
TTTATTACAAGTTACTTCGT+TGG 0.528532 4:+91442926 MsG0480023936.01.T01:three_prime_UTR
CCATCAGCCCTTGATCGTCT+AGG 0.532282 4:+91439022 MsG0480023936.01.T01:CDS
GCTATCTCCAGTAGTCAAGC+AGG 0.533210 4:-91441483 None:intergenic
CGTATTCTTCTCTGGAGCAA+AGG 0.541055 4:+91443084 MsG0480023936.01.T01:three_prime_UTR
ATGATGCTTATAGCATTGGC+AGG 0.543569 4:-91441560 None:intergenic
CTGCAGCCCCAACTTGAAAG+TGG 0.545884 4:+91438894 MsG0480023936.01.T01:intron
CATGATATACATGCCATACT+GGG 0.549712 4:+91439248 MsG0480023936.01.T01:CDS
GGGGCCTTTCCGGCAGAACG+TGG 0.552419 4:-91441650 None:intergenic
GCTGAGCGGGTTTCTCATTG+TGG 0.560946 4:+91439198 MsG0480023936.01.T01:CDS
TTCCTTGTAATCTAAGGGCG+GGG 0.562049 4:-91441609 None:intergenic
CCAAACCGCGGTAAAGAGAC+CGG 0.562944 4:+91442657 MsG0480023936.01.T01:CDS
TCGATGGATATGGATATCAC+GGG 0.569332 4:+91438540 MsG0480023936.01.T01:CDS
CATTGAGACCGACTGTGAAG+TGG 0.571055 4:+91441580 MsG0480023936.01.T01:CDS
ACTTTGGTTCAGTTTCAGCA+GGG 0.574254 4:-91442443 None:intergenic
GGATCTGGGAGACGCTTGGA+CGG 0.577239 4:+91442480 MsG0480023936.01.T01:CDS
GGGAAGAAGTATTCTTTAAG+GGG 0.578462 4:+91442869 MsG0480023936.01.T01:CDS
CTTTGGTTCAGTTTCAGCAG+GGG 0.579771 4:-91442442 None:intergenic
ATAGACTTGGATCCATGCAC+AGG 0.580648 4:-91442949 None:intergenic
ATTATAAGCAAAAGACTGAC+CGG 0.589350 4:+91443003 MsG0480023936.01.T01:three_prime_UTR
TTCGTAATGCTGCTGCTGAG+CGG 0.597157 4:+91439184 MsG0480023936.01.T01:CDS
GGTTCCTTGTAATCTAAGGG+CGG 0.597744 4:-91441611 None:intergenic
TCTCTCTTTGTAGGCAACCG+AGG 0.598775 4:+91442787 MsG0480023936.01.T01:intron
GGCGAAGTCCACTTCACAGT+CGG 0.599655 4:-91441588 None:intergenic
TAACTAACCTAGACGATCAA+GGG 0.601848 4:-91439029 None:intergenic
CAAACCATTACCAGCTTCTG+GGG 0.606173 4:-91441669 None:intergenic
GGTGGAGGCTGATAATTCAA+AGG 0.609376 4:-91442507 None:intergenic
ATAAGTTTCAGCCTTTCACC+GGG 0.612687 4:+91442849 MsG0480023936.01.T01:CDS
ACTTTGTGAACTAGAAGCTG+TGG 0.614635 4:-91442592 None:intergenic
CCGGAAGAAGAAACTGGTGG+AGG 0.618481 4:-91442522 None:intergenic
TGTTCTGGAGTTCATTGCTG+AGG 0.630474 4:+91439221 MsG0480023936.01.T01:CDS
TAGATTACAAGGAACCTGAA+AGG 0.641772 4:+91441618 MsG0480023936.01.T01:CDS
GACCCGGAAGAAGAAACTGG+TGG 0.649986 4:-91442525 None:intergenic
TACTGGAGATAGCATTATGG+TGG 0.650470 4:+91441493 MsG0480023936.01.T01:CDS
AGTAATGCTCCTCAAACTCA+GGG 0.668072 4:+91442612 MsG0480023936.01.T01:CDS
TGTGAACTAGAAGCTGTGGA+AGG 0.673745 4:-91442588 None:intergenic
GCAGCTTGGAAACTACATTG+AGG 0.674859 4:+91441453 MsG0480023936.01.T01:intron
AGACGATCAAGGGCTGATGG+AGG 0.677129 4:-91439019 None:intergenic
TTACGAAGTTCAAACAACAT+CGG 0.689875 4:-91439168 None:intergenic
CCGCGGTAAAGAGACCGGAA+AGG 0.690679 4:+91442662 MsG0480023936.01.T01:CDS
CCTTTCCGGTCTCTTTACCG+CGG 0.712916 4:-91442662 None:intergenic
TTTGGGTCAAATCCAAACCG+CGG 0.728144 4:+91442645 MsG0480023936.01.T01:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AATTGTTTCTTAAATAATAA+TGG - Chr4:91438837-91438856 None:intergenic 10.0%
!!! TTGACTTTTTATTTTAATTA+AGG + Chr4:91441970-91441989 MsG0480023936.01.T01:intron 10.0%
!! AAAATATGAACAAATAAATG+GGG - Chr4:91440064-91440083 None:intergenic 15.0%
!! ATATTGCATAAAACATATTA+AGG - Chr4:91440534-91440553 None:intergenic 15.0%
!! ATCAATAAATCACATTAAAT+TGG + Chr4:91440176-91440195 MsG0480023936.01.T01:intron 15.0%
!! CAACTAAAAATATAAAAAAG+TGG - Chr4:91441953-91441972 None:intergenic 15.0%
!! CACAAAGTAATAATAATTTA+AGG - Chr4:91443056-91443075 None:intergenic 15.0%
!! GAAAATATGAACAAATAAAT+GGG - Chr4:91440065-91440084 None:intergenic 15.0%
!! TATGTACATAATATTAGAAA+CGG - Chr4:91438638-91438657 None:intergenic 15.0%
!! TCAATAAATCACATTAAATT+GGG + Chr4:91440177-91440196 MsG0480023936.01.T01:intron 15.0%
!! TGAAAATATGAACAAATAAA+TGG - Chr4:91440066-91440085 None:intergenic 15.0%
!! TGTAAGAACTATATTTAATA+TGG + Chr4:91440561-91440580 MsG0480023936.01.T01:intron 15.0%
!!! AATAAATATTTTTGAGACTT+CGG + Chr4:91442237-91442256 MsG0480023936.01.T01:intron 15.0%
!! ACTTAAATGTTAAAAAGAAG+TGG - Chr4:91442693-91442712 None:intergenic 20.0%
!! CAATAAATCACATTAAATTG+GGG + Chr4:91440178-91440197 MsG0480023936.01.T01:intron 20.0%
!! GAATGTGAAAAATGTAATTA+TGG + Chr4:91442263-91442282 MsG0480023936.01.T01:intron 20.0%
!! TAATTATGGAAAATATCATC+TGG + Chr4:91442277-91442296 MsG0480023936.01.T01:intron 20.0%
!!! ACGGCATTTTTTTTTTTTTT+TGG - Chr4:91439889-91439908 None:intergenic 20.0%
!!! AGAGATTAATTGGATATTTT+TGG - Chr4:91438769-91438788 None:intergenic 20.0%
!!! ATCCATTGAGAATATATTTT+AGG + Chr4:91439944-91439963 MsG0480023936.01.T01:intron 20.0%
!!! GTATTTTTAAATCTCAGTAA+AGG - Chr4:91442310-91442329 None:intergenic 20.0%
!!! GTTTCTTCTTATTTCTTTTA+TGG + Chr4:91441322-91441341 MsG0480023936.01.T01:intron 20.0%
!!! TCTTATTTCTTTTATGGTTT+TGG + Chr4:91441328-91441347 MsG0480023936.01.T01:intron 20.0%
! AAAAAAAAAAAAATGCCGTC+CGG + Chr4:91439890-91439909 MsG0480023936.01.T01:intron 25.0%
! AAAAAATTACAAGGGGAAAT+CGG - Chr4:91441220-91441239 None:intergenic 25.0%
! AAACTCTACATCATTATGTA+TGG - Chr4:91440479-91440498 None:intergenic 25.0%
! AAATTCTAACTTAAGTGTGT+AGG + Chr4:91439702-91439721 MsG0480023936.01.T01:intron 25.0%
! AACAATATAGTAGAACAAAG+GGG - Chr4:91442209-91442228 None:intergenic 25.0%
! AACTCTACATCATTATGTAT+GGG - Chr4:91440478-91440497 None:intergenic 25.0%
! ATACATAATGATGTAGAGTT+TGG + Chr4:91440478-91440497 MsG0480023936.01.T01:intron 25.0%
! ATACTTCTGCATCATTATTT+GGG + Chr4:91441127-91441146 MsG0480023936.01.T01:intron 25.0%
! ATGGTCGATTAAAAGTTATT+GGG - Chr4:91440373-91440392 None:intergenic 25.0%
! ATTGTTAGGAATTGTTTAAC+CGG + Chr4:91439771-91439790 MsG0480023936.01.T01:intron 25.0%
! CAACAATATAGTAGAACAAA+GGG - Chr4:91442210-91442229 None:intergenic 25.0%
! CCAAAATGACAAAATTAAGT+TGG - Chr4:91441695-91441714 None:intergenic 25.0%
! GCGATTAAACATAGTTATAT+TGG + Chr4:91440324-91440343 MsG0480023936.01.T01:intron 25.0%
! TAAAAATACTGCTGAGTTAA+AGG + Chr4:91442321-91442340 MsG0480023936.01.T01:intron 25.0%
! TATACTTCTGCATCATTATT+TGG + Chr4:91441126-91441145 MsG0480023936.01.T01:intron 25.0%
! TATTGGAAGCTTATTATAAG+AGG + Chr4:91441786-91441805 MsG0480023936.01.T01:intron 25.0%
! TGCCTAAAATATATTCTCAA+TGG - Chr4:91439949-91439968 None:intergenic 25.0%
! TTAATTGAAATGCTCTTCAT+GGG + Chr4:91439349-91439368 MsG0480023936.01.T01:intron 25.0%
! TTATCTTCTTCTTTCTCTTT+GGG - Chr4:91442833-91442852 None:intergenic 25.0%
! TTCAAAAAACTCAAAAAGCA+TGG - Chr4:91438942-91438961 None:intergenic 25.0%
! TTTATTACAAGTTACTTCGT+TGG + Chr4:91442926-91442945 MsG0480023936.01.T01:three_prime_UTR 25.0%
!! ACACACTTAAGTTAGAATTT+TGG - Chr4:91439702-91439721 None:intergenic 25.0%
!! ACATGTCGATTATTTATTGA+GGG + Chr4:91438689-91438708 MsG0480023936.01.T01:intron 25.0%
!! CACACTTAAGTTAGAATTTT+GGG - Chr4:91439701-91439720 None:intergenic 25.0%
!! TACATGTCGATTATTTATTG+AGG + Chr4:91438688-91438707 MsG0480023936.01.T01:intron 25.0%
!! TGTTCAGAAACAAAAACTTT+TGG - Chr4:91439281-91439300 None:intergenic 25.0%
!!! ATTTTGCCGTTTCAAAAAAA+AGG + Chr4:91441290-91441309 MsG0480023936.01.T01:intron 25.0%
!!! CCAACTTAATTTTGTCATTT+TGG + Chr4:91441692-91441711 MsG0480023936.01.T01:intron 25.0%
!!! GGTAAACATGTTATTTTTTG+TGG - Chr4:91443035-91443054 None:intergenic 25.0%
!!! TAGTATTTTAGTTGTTCTGT+TGG + Chr4:91442095-91442114 MsG0480023936.01.T01:intron 25.0%
!!! TTTTGCCGTTTCAAAAAAAA+GGG + Chr4:91441291-91441310 MsG0480023936.01.T01:intron 25.0%
AAAAATGTGACACTTCCAAA+GGG + Chr4:91439428-91439447 MsG0480023936.01.T01:CDS 30.0%
AAACCAATATGAGGAGTTAA+AGG - Chr4:91442153-91442172 None:intergenic 30.0%
AACCAAGCCTATTGTAAATA+AGG - Chr4:91439978-91439997 None:intergenic 30.0%
AACTTAACATATGTTCCCTT+TGG - Chr4:91439446-91439465 None:intergenic 30.0%
AAGTAGCATGATGTTTATGT+TGG + Chr4:91442008-91442027 MsG0480023936.01.T01:intron 30.0%
ACATTCACGGTTAAATCAAA+TGG - Chr4:91440302-91440321 None:intergenic 30.0%
AGCCTATTGTAAATAAGGTA+AGG - Chr4:91439973-91439992 None:intergenic 30.0%
AGGTGGGAAAAAAATTACAA+GGG - Chr4:91441228-91441247 None:intergenic 30.0%
ATGCAACCCTTTACTTTAAA+GGG + Chr4:91443108-91443127 MsG0480023936.01.T01:three_prime_UTR 30.0%
ATTATAAGCAAAAGACTGAC+CGG + Chr4:91443003-91443022 MsG0480023936.01.T01:three_prime_UTR 30.0%
CAATTAACGTCAAAACTCAA+AGG - Chr4:91439336-91439355 None:intergenic 30.0%
CTAAGGTTTAAACCAATATG+AGG - Chr4:91442162-91442181 None:intergenic 30.0%
CTTATCTTCTTCTTTCTCTT+TGG - Chr4:91442834-91442853 None:intergenic 30.0%
GATGGTCGATTAAAAGTTAT+TGG - Chr4:91440374-91440393 None:intergenic 30.0%
GCAACAATATAGTAGAACAA+AGG - Chr4:91442211-91442230 None:intergenic 30.0%
GTTAAGTACGAGAGATTAAT+TGG - Chr4:91438779-91438798 None:intergenic 30.0%
GTTAATTGAAATGCTCTTCA+TGG + Chr4:91439348-91439367 MsG0480023936.01.T01:intron 30.0%
TAAATAAGACGCATATTCAC+CGG - Chr4:91439093-91439112 None:intergenic 30.0%
TACTTCTGCATCATTATTTG+GGG + Chr4:91441128-91441147 MsG0480023936.01.T01:intron 30.0%
TGATCTAGTGATTGATATTG+TGG + Chr4:91439665-91439684 MsG0480023936.01.T01:intron 30.0%
TTAAGTAAGAGCTGGTAATA+TGG + Chr4:91442036-91442055 MsG0480023936.01.T01:intron 30.0%
TTACGAAGTTCAAACAACAT+CGG - Chr4:91439171-91439190 None:intergenic 30.0%
! AAATAACCAAAAGTACATGC+TGG - Chr4:91439744-91439763 None:intergenic 30.0%
! ACATCATGCTACTTAAAGAT+TGG - Chr4:91442002-91442021 None:intergenic 30.0%
! AGCCTTACCTTATTTACAAT+AGG + Chr4:91439968-91439987 MsG0480023936.01.T01:intron 30.0%
! CAACATTTTTCACATTAGAC+AGG - Chr4:91438983-91439002 None:intergenic 30.0%
! GGTTTATATATTTCTGTGTG+TGG + Chr4:91440239-91440258 MsG0480023936.01.T01:intron 30.0%
! GTTATTTCGTAGGAATTGTT+AGG + Chr4:91439757-91439776 MsG0480023936.01.T01:intron 30.0%
! TACAAAATATAGCACTGAAC+CGG - Chr4:91439793-91439812 None:intergenic 30.0%
! TACAAGTTTTGCAATAGACT+TGG - Chr4:91442965-91442984 None:intergenic 30.0%
! TACCTTATTTACAATAGGCT+TGG + Chr4:91439973-91439992 MsG0480023936.01.T01:intron 30.0%
! TGTATTTTGCATTCTTTTCC+CGG + Chr4:91439071-91439090 MsG0480023936.01.T01:intron 30.0%
!! AGCTTGATTTGTTATCACAT+TGG + Chr4:91440218-91440237 MsG0480023936.01.T01:intron 30.0%
!! GTGAATATGCGTCTTATTTA+TGG + Chr4:91439093-91439112 MsG0480023936.01.T01:intron 30.0%
!! TGTACTTTTGGTTATTTCGT+AGG + Chr4:91439747-91439766 MsG0480023936.01.T01:intron 30.0%
!! TTAGAATTTTGGGTGAAAGT+GGG - Chr4:91439691-91439710 None:intergenic 30.0%
!!! AATATTTTTGAGACTTCGGT+CGG + Chr4:91442241-91442260 MsG0480023936.01.T01:intron 30.0%
!!! ATCCTTTTTTGTGTATGTGT+GGG + Chr4:91441837-91441856 MsG0480023936.01.T01:intron 30.0%
!!! TCTTTTTGGGTGGTTTTTAA+GGG + Chr4:91441163-91441182 MsG0480023936.01.T01:intron 30.0%
!!! TGCTTCCCTTTTTTTTGAAA+CGG - Chr4:91441299-91441318 None:intergenic 30.0%
!!! TGGTTTTTTTAAGTAAGAGC+TGG + Chr4:91442028-91442047 MsG0480023936.01.T01:intron 30.0%
!!! TTATTTTTTGTGGCTTCTAC+CGG - Chr4:91443025-91443044 None:intergenic 30.0%
!!! TTCTTTTTGGGTGGTTTTTA+AGG + Chr4:91441162-91441181 MsG0480023936.01.T01:intron 30.0%
AAATAAGACGCATATTCACC+GGG - Chr4:91439092-91439111 None:intergenic 35.0%
AACCCACACATACACAAAAA+AGG - Chr4:91441842-91441861 None:intergenic 35.0%
AAGAAGTGGTATTACCTTTC+CGG - Chr4:91442679-91442698 None:intergenic 35.0%
AATGAACACGTATTCTTCTC+TGG + Chr4:91443076-91443095 MsG0480023936.01.T01:three_prime_UTR 35.0%
ACTTATGAATACCTCTTGCA+AGG + Chr4:91439564-91439583 MsG0480023936.01.T01:intron 35.0%
ATAACTAACCTAGACGATCA+AGG - Chr4:91439033-91439052 None:intergenic 35.0%
ATATAGTAGAACAAAGGGGT+TGG - Chr4:91442205-91442224 None:intergenic 35.0%
ATGGGTTCTTATACAGATGA+TGG + Chr4:91439367-91439386 MsG0480023936.01.T01:intron 35.0%
ATGTATGTGTACTTAGCCTA+CGG + Chr4:91440395-91440414 MsG0480023936.01.T01:intron 35.0%
ATTTACTTGCAAACACTGAC+TGG + Chr4:91441390-91441409 MsG0480023936.01.T01:intron 35.0%
CACTGAAAGACAATGTGAAT+TGG - Chr4:91439620-91439639 None:intergenic 35.0%
CAGGTGGGAAAAAAATTACA+AGG - Chr4:91441229-91441248 None:intergenic 35.0%
CATGATATACATGCCATACT+GGG + Chr4:91439248-91439267 MsG0480023936.01.T01:CDS 35.0%
CATGCTGCTATAATTGGTAT+TGG + Chr4:91441769-91441788 MsG0480023936.01.T01:intron 35.0%
CCTTAAAGAATACTTCTTCC+CGG - Chr4:91442870-91442889 None:intergenic 35.0%
CTATGTATAACGTAGTGAGA+TGG - Chr4:91440452-91440471 None:intergenic 35.0%
CTCAATGATGCTTATAGCAT+TGG - Chr4:91441567-91441586 None:intergenic 35.0%
CTTGGATATTTCCAATCCTA+AGG + Chr4:91439487-91439506 MsG0480023936.01.T01:CDS 35.0%
GAAAAATGTGACACTTCCAA+AGG + Chr4:91439427-91439446 MsG0480023936.01.T01:CDS 35.0%
GATGCAACCCTTTACTTTAA+AGG + Chr4:91443107-91443126 MsG0480023936.01.T01:three_prime_UTR 35.0%
GGTGGGAAAAAAATTACAAG+GGG - Chr4:91441227-91441246 None:intergenic 35.0%
GTCGATTAAAAGTTATTGGG+TGG - Chr4:91440370-91440389 None:intergenic 35.0%
GTTCTTCTTCATCTCTCTAA+GGG + Chr4:91440715-91440734 MsG0480023936.01.T01:intron 35.0%
TAAATCAAACCATTGTGCCA+AGG + Chr4:91440036-91440055 MsG0480023936.01.T01:intron 35.0%
TAACTAACCTAGACGATCAA+GGG - Chr4:91439032-91439051 None:intergenic 35.0%
TACACCAGTATACTAGTGTT+TGG - Chr4:91439846-91439865 None:intergenic 35.0%
TAGATTACAAGGAACCTGAA+AGG + Chr4:91441618-91441637 MsG0480023936.01.T01:CDS 35.0%
TATAGTAGAACAAAGGGGTT+GGG - Chr4:91442204-91442223 None:intergenic 35.0%
TCACATTAAATTGGGGAATG+TGG + Chr4:91440185-91440204 MsG0480023936.01.T01:intron 35.0%
TCAGGTTCCTTGTAATCTAA+GGG - Chr4:91441617-91441636 None:intergenic 35.0%
TGGTTAATTTAATGAGCGAG+AGG - Chr4:91440432-91440451 None:intergenic 35.0%
TGTTTAATCGCGAACATTCA+CGG - Chr4:91440315-91440334 None:intergenic 35.0%
TTAAATTGGGGAATGTGGTT+TGG + Chr4:91440190-91440209 MsG0480023936.01.T01:intron 35.0%
TTCGATGGATATGGATATCA+CGG + Chr4:91438539-91438558 MsG0480023936.01.T01:CDS 35.0%
TTCTTCAGAGATGAGAGAAA+TGG - Chr4:91440117-91440136 None:intergenic 35.0%
TTGCCTACAAAGAGAGAAAA+TGG - Chr4:91442784-91442803 None:intergenic 35.0%
TTGGGGAAGCTTATTATAAG+AGG + Chr4:91441876-91441895 MsG0480023936.01.T01:intron 35.0%
! AATTTTTCCTGCTTGACTAC+TGG + Chr4:91441476-91441495 MsG0480023936.01.T01:CDS 35.0%
! ACCTTTTCGATAAAAGAAGC+AGG - Chr4:91438596-91438615 None:intergenic 35.0%
! ATCTCTGAAGAACATTCACA+TGG + Chr4:91440125-91440144 MsG0480023936.01.T01:intron 35.0%
! CCTTTTCGATAAAAGAAGCA+GGG - Chr4:91438595-91438614 None:intergenic 35.0%
! GAGAACATGCTTTTACAAGA+GGG + Chr4:91439389-91439408 MsG0480023936.01.T01:CDS 35.0%
! GTAAGCTTGTTTCACGAATA+TGG + Chr4:91439306-91439325 MsG0480023936.01.T01:intron 35.0%
! TCTCCATTTTCTCTCTTTGT+AGG + Chr4:91442778-91442797 MsG0480023936.01.T01:intron 35.0%
! TTCAGGTTCCTTGTAATCTA+AGG - Chr4:91441618-91441637 None:intergenic 35.0%
! TTGTAACCAGCATGTACTTT+TGG + Chr4:91439735-91439754 MsG0480023936.01.T01:intron 35.0%
!! ACACAGTTTTTCGATGGATA+TGG + Chr4:91438530-91438549 MsG0480023936.01.T01:CDS 35.0%
!! CGGGAAGAAGTATTCTTTAA+GGG + Chr4:91442868-91442887 MsG0480023936.01.T01:CDS 35.0%
!! GCAAGAGGTATTCATAAGTT+GGG - Chr4:91439563-91439582 None:intergenic 35.0%
!! GGGAAGAAGTATTCTTTAAG+GGG + Chr4:91442869-91442888 MsG0480023936.01.T01:CDS 35.0%
!! GTTAGAATTTTGGGTGAAAG+TGG - Chr4:91439692-91439711 None:intergenic 35.0%
!! TAACATAACATCGACTCACA+TGG - Chr4:91439513-91439532 None:intergenic 35.0%
!! TGCAAGAGGTATTCATAAGT+TGG - Chr4:91439564-91439583 None:intergenic 35.0%
!! TTTGTCACCACTTTCAAGTT+GGG - Chr4:91438904-91438923 None:intergenic 35.0%
!! TTTTGTCACCACTTTCAAGT+TGG - Chr4:91438905-91438924 None:intergenic 35.0%
!!! CATCCTTTTTTGTGTATGTG+TGG + Chr4:91441836-91441855 MsG0480023936.01.T01:intron 35.0%
!!! CTTTTTGGGTGGTTTTTAAG+GGG + Chr4:91441164-91441183 MsG0480023936.01.T01:intron 35.0%
!!! GTGTCGGTTTTGTTCTTTTT+GGG + Chr4:91441150-91441169 MsG0480023936.01.T01:intron 35.0%
!!! TGGGAGTTGTTTTTCTATAC+TGG + Chr4:91441052-91441071 MsG0480023936.01.T01:intron 35.0%
AACAAATAAATGGGGAGCCT+TGG - Chr4:91440056-91440075 None:intergenic 40.0%
AAGTAATGCTCCTCAAACTC+AGG + Chr4:91442611-91442630 MsG0480023936.01.T01:CDS 40.0%
ACTTTGTGAACTAGAAGCTG+TGG - Chr4:91442595-91442614 None:intergenic 40.0%
AGAGGTTGAATTCATGTCGT+TGG + Chr4:91441804-91441823 MsG0480023936.01.T01:intron 40.0%
AGTAATGCTCCTCAAACTCA+GGG + Chr4:91442612-91442631 MsG0480023936.01.T01:CDS 40.0%
AGTATACTAGTGTTTGGCTG+GGG - Chr4:91439840-91439859 None:intergenic 40.0%
ATAAGTTTCAGCCTTTCACC+GGG + Chr4:91442849-91442868 MsG0480023936.01.T01:CDS 40.0%
ATAGTAGAACAAAGGGGTTG+GGG - Chr4:91442203-91442222 None:intergenic 40.0%
ATTACCACTGAAAGGAGGAT+AGG - Chr4:91442742-91442761 None:intergenic 40.0%
ATTGTCTCCTTTACCAGAGT+TGG + Chr4:91442119-91442138 MsG0480023936.01.T01:intron 40.0%
CAACATGACATCAAACAGCA+TGG - Chr4:91439647-91439666 None:intergenic 40.0%
CAGTATACTAGTGTTTGGCT+GGG - Chr4:91439841-91439860 None:intergenic 40.0%
CATCAATTACCACTGAAAGG+AGG - Chr4:91442747-91442766 None:intergenic 40.0%
CCAAAGTTCAACCCATTTAC+TGG + Chr4:91442459-91442478 MsG0480023936.01.T01:CDS 40.0%
CTATGAATTCCTGTCCACTA+TGG + Chr4:91440609-91440628 MsG0480023936.01.T01:intron 40.0%
CTCCTTTCAGTGGTAATTGA+TGG + Chr4:91442745-91442764 MsG0480023936.01.T01:intron 40.0%
CTTGTCTCTATTGTTGGGAT+GGG + Chr4:91441718-91441737 MsG0480023936.01.T01:intron 40.0%
GACATTATCAAGTGAGTGTC+AGG + Chr4:91440263-91440282 MsG0480023936.01.T01:intron 40.0%
GACTACTGGAGATAGCATTA+TGG + Chr4:91441490-91441509 MsG0480023936.01.T01:CDS 40.0%
GAGGTTGAATTCATGTCGTT+GGG + Chr4:91441805-91441824 MsG0480023936.01.T01:intron 40.0%
GATAAGTTTCAGCCTTTCAC+CGG + Chr4:91442848-91442867 MsG0480023936.01.T01:CDS 40.0%
GCAACACACATACACACATA+AGG - Chr4:91441750-91441769 None:intergenic 40.0%
GCATGATATACATGCCATAC+TGG + Chr4:91439247-91439266 MsG0480023936.01.T01:CDS 40.0%
GCTAAGTACACATACATGGA+TGG - Chr4:91440392-91440411 None:intergenic 40.0%
GGTCCTTTAACTCCTCATAT+TGG + Chr4:91442147-91442166 MsG0480023936.01.T01:intron 40.0%
GGTCTCTTGTCTCTATTGTT+GGG + Chr4:91441713-91441732 MsG0480023936.01.T01:intron 40.0%
GGTTCTTCTTCATCTCTCTA+AGG + Chr4:91440714-91440733 MsG0480023936.01.T01:intron 40.0%
GGTTGCATGCTGCTATAATT+GGG + Chr4:91441858-91441877 MsG0480023936.01.T01:intron 40.0%
GTAGGCTAAGTACACATACA+TGG - Chr4:91440396-91440415 None:intergenic 40.0%
GTCCATCAATTACCACTGAA+AGG - Chr4:91442750-91442769 None:intergenic 40.0%
GTGTTGCATGCTGCTATAAT+TGG + Chr4:91441763-91441782 MsG0480023936.01.T01:intron 40.0%
GTTGCATGCTGCTATAATTG+GGG + Chr4:91441765-91441784 MsG0480023936.01.T01:intron 40.0%
TACTGGAGATAGCATTATGG+TGG + Chr4:91441493-91441512 MsG0480023936.01.T01:CDS 40.0%
TAGACAGGAACACATAGAAC+AGG - Chr4:91438968-91438987 None:intergenic 40.0%
TATGGATTCAGGGAAGCAAT+TGG + Chr4:91440627-91440646 MsG0480023936.01.T01:intron 40.0%
TCAACCCATTTACTGGATCT+GGG + Chr4:91442466-91442485 MsG0480023936.01.T01:CDS 40.0%
TCGATGGATATGGATATCAC+GGG + Chr4:91438540-91438559 MsG0480023936.01.T01:CDS 40.0%
TCTTCTTCTTTCTCTTTGGG+TGG - Chr4:91442830-91442849 None:intergenic 40.0%
TCTTGTCTCTATTGTTGGGA+TGG + Chr4:91441717-91441736 MsG0480023936.01.T01:intron 40.0%
TGGTCTCTTGTCTCTATTGT+TGG + Chr4:91441712-91441731 MsG0480023936.01.T01:intron 40.0%
TTACCACTGAAAGGAGGATA+GGG - Chr4:91442741-91442760 None:intergenic 40.0%
TTCAACCCATTTACTGGATC+TGG + Chr4:91442465-91442484 MsG0480023936.01.T01:CDS 40.0%
TTGAATTCATGTCGTTGGGA+TGG + Chr4:91441809-91441828 MsG0480023936.01.T01:intron 40.0%
TTTACCACTGCATGACTAGA+AGG - Chr4:91440020-91440039 None:intergenic 40.0%
! AAAAGGTTAGCGTGCTTTTC+AGG + Chr4:91438609-91438628 MsG0480023936.01.T01:intron 40.0%
! AACTTTGGTTCAGTTTCAGC+AGG - Chr4:91442447-91442466 None:intergenic 40.0%
! ACTTTGGTTCAGTTTCAGCA+GGG - Chr4:91442446-91442465 None:intergenic 40.0%
! AGCTCAACTTGTTTGAGCTA+AGG - Chr4:91442179-91442198 None:intergenic 40.0%
! CAGAAGTATACAAGCAACAG+CGG - Chr4:91441116-91441135 None:intergenic 40.0%
! CCCTGCTTCTTTTATCGAAA+AGG + Chr4:91438592-91438611 MsG0480023936.01.T01:CDS 40.0%
! CTTCTGTGCTTTGTGCTTTT+GGG + Chr4:91440763-91440782 MsG0480023936.01.T01:intron 40.0%
! GAATTGACATTTTGAGCAGC+AGG - Chr4:91442564-91442583 None:intergenic 40.0%
! GGAGAACATGCTTTTACAAG+AGG + Chr4:91439388-91439407 MsG0480023936.01.T01:CDS 40.0%
! TCCAAGAAGTCTTTTGTGTG+AGG - Chr4:91439473-91439492 None:intergenic 40.0%
! TCCATGTCGATTGTTCATGA+GGG + Chr4:91438718-91438737 MsG0480023936.01.T01:intron 40.0%
! TGCATCATTATTTGGGGTGT+CGG + Chr4:91441134-91441153 MsG0480023936.01.T01:intron 40.0%
! TTCCATGTCGATTGTTCATG+AGG + Chr4:91438717-91438736 MsG0480023936.01.T01:intron 40.0%
! TTCTGTGCTTTGTGCTTTTG+GGG + Chr4:91440764-91440783 MsG0480023936.01.T01:intron 40.0%
! TTTTGGATGCATACCCAGTA+TGG - Chr4:91439264-91439283 None:intergenic 40.0%
!! ATGATGCTTATAGCATTGGC+AGG - Chr4:91441563-91441582 None:intergenic 40.0%
!! CCAGTAAATGGGTTGAACTT+TGG - Chr4:91442462-91442481 None:intergenic 40.0%
!! CCGGGAAGAAGTATTCTTTA+AGG + Chr4:91442867-91442886 MsG0480023936.01.T01:CDS 40.0%
!! GCAGTTCTTTGTGGTTTGTT+GGG + Chr4:91441033-91441052 MsG0480023936.01.T01:intron 40.0%
!! GTATTCTTCTCTGGAGCAAA+GGG + Chr4:91443085-91443104 MsG0480023936.01.T01:three_prime_UTR 40.0%
!! TTATGAGGGTAGTTGATGGT+AGG + Chr4:91440947-91440966 MsG0480023936.01.T01:intron 40.0%
!! TTGTCACCACTTTCAAGTTG+GGG - Chr4:91438903-91438922 None:intergenic 40.0%
!!! CTATACTGGTTTTGCTGCAT+GGG + Chr4:91441066-91441085 MsG0480023936.01.T01:intron 40.0%
!!! GGTGTCGGTTTTGTTCTTTT+TGG + Chr4:91441149-91441168 MsG0480023936.01.T01:intron 40.0%
!!! TCGGTTTTGTTCTTTTTGGG+TGG + Chr4:91441153-91441172 MsG0480023936.01.T01:intron 40.0%
!!! TCTATACTGGTTTTGCTGCA+TGG + Chr4:91441065-91441084 MsG0480023936.01.T01:intron 40.0%
AAGCACAAAGCACAGAAGGA+CGG - Chr4:91440761-91440780 None:intergenic 45.0%
ACCAAACTCTTGCCATGGAA+GGG + Chr4:91439917-91439936 MsG0480023936.01.T01:intron 45.0%
ACCCTCATGAACAATCGACA+TGG - Chr4:91438722-91438741 None:intergenic 45.0%
AGAGGAGTAAACATAGCCGT+AGG - Chr4:91440414-91440433 None:intergenic 45.0%
ATAGACTTGGATCCATGCAC+AGG - Chr4:91442952-91442971 None:intergenic 45.0%
ATCGGTTGCCACAAAGGAAT+CGG - Chr4:91441202-91441221 None:intergenic 45.0%
ATTCAGGGAAGCAATTGGTG+CGG + Chr4:91440632-91440651 MsG0480023936.01.T01:intron 45.0%
CAAACCATTACCAGCTTCTG+GGG - Chr4:91441672-91441691 None:intergenic 45.0%
CAGGGGCTTCTTTATCTGTA+AGG - Chr4:91442428-91442447 None:intergenic 45.0%
CCAAGCTGCATGAGAAAACA+TGG - Chr4:91441442-91441461 None:intergenic 45.0%
CCAGCCAAACACTAGTATAC+TGG + Chr4:91439839-91439858 MsG0480023936.01.T01:intron 45.0%
CCAGTATACTAGTGTTTGGC+TGG - Chr4:91439842-91439861 None:intergenic 45.0%
GAATACTTCTTCCCGGTGAA+AGG - Chr4:91442863-91442882 None:intergenic 45.0%
GCAAACCATTACCAGCTTCT+GGG - Chr4:91441673-91441692 None:intergenic 45.0%
GCAGCTTGGAAACTACATTG+AGG + Chr4:91441453-91441472 MsG0480023936.01.T01:intron 45.0%
GCCTCACACAAAAGACTTCT+TGG + Chr4:91439469-91439488 MsG0480023936.01.T01:CDS 45.0%
GGGTTGCATGCTGCTATAAT+TGG + Chr4:91441857-91441876 MsG0480023936.01.T01:intron 45.0%
GGTTCCTTGTAATCTAAGGG+CGG - Chr4:91441614-91441633 None:intergenic 45.0%
GGTTTCTCATTGTGGTGTTC+TGG + Chr4:91439206-91439225 MsG0480023936.01.T01:CDS 45.0%
GTATACTAGTGTTTGGCTGG+GGG - Chr4:91439839-91439858 None:intergenic 45.0%
GTCTCCCAGATCCAGTAAAT+GGG - Chr4:91442473-91442492 None:intergenic 45.0%
GTGCACTAATAAGCTCAGGT+GGG - Chr4:91441244-91441263 None:intergenic 45.0%
GTTCCTTGTAATCTAAGGGC+GGG - Chr4:91441613-91441632 None:intergenic 45.0%
TACCAAACTCTTGCCATGGA+AGG + Chr4:91439916-91439935 MsG0480023936.01.T01:intron 45.0%
TCAGAGATGAGAGAAATGGC+AGG - Chr4:91440113-91440132 None:intergenic 45.0%
TCCTGTCCACTATGGATTCA+GGG + Chr4:91440617-91440636 MsG0480023936.01.T01:intron 45.0%
TCGGTTATGAGGGTAGTTGA+TGG + Chr4:91440943-91440962 MsG0480023936.01.T01:intron 45.0%
TGTGAACTAGAAGCTGTGGA+AGG - Chr4:91442591-91442610 None:intergenic 45.0%
TTACCCTATCCTCCTTTCAG+TGG + Chr4:91442735-91442754 MsG0480023936.01.T01:intron 45.0%
TTCCTGTCCACTATGGATTC+AGG + Chr4:91440616-91440635 MsG0480023936.01.T01:intron 45.0%
TTCCTTGTAATCTAAGGGCG+GGG - Chr4:91441612-91441631 None:intergenic 45.0%
TTGCTTCCCTGAATCCATAG+TGG - Chr4:91440626-91440645 None:intergenic 45.0%
TTTGGGTCAAATCCAAACCG+CGG + Chr4:91442645-91442664 MsG0480023936.01.T01:CDS 45.0%
! CCAAAAGCACAAAGCACAGA+AGG - Chr4:91440765-91440784 None:intergenic 45.0%
! CCATGTTTTCTCATGCAGCT+TGG + Chr4:91441439-91441458 MsG0480023936.01.T01:intron 45.0%
! CCTTCTGTGCTTTGTGCTTT+TGG + Chr4:91440762-91440781 MsG0480023936.01.T01:intron 45.0%
! CTTTGGTTCAGTTTCAGCAG+GGG - Chr4:91442445-91442464 None:intergenic 45.0%
! GGCAGTTCTTTGTGGTTTGT+TGG + Chr4:91441032-91441051 MsG0480023936.01.T01:intron 45.0%
! TCTGTGCTTTGTGCTTTTGG+GGG + Chr4:91440765-91440784 MsG0480023936.01.T01:intron 45.0%
! TTGCAAACACTGACTGGAGT+TGG + Chr4:91441396-91441415 MsG0480023936.01.T01:intron 45.0%
!! CGTATTCTTCTCTGGAGCAA+AGG + Chr4:91443084-91443103 MsG0480023936.01.T01:three_prime_UTR 45.0%
!! CTCTTGCTTTGCTTTTGCCT+CGG - Chr4:91442807-91442826 None:intergenic 45.0%
!! GTAGTTGATGGTAGGAAGGT+GGG + Chr4:91440955-91440974 MsG0480023936.01.T01:intron 45.0%
!! TAAGGGTGCAGTTTTTGTCC+TGG + Chr4:91440732-91440751 MsG0480023936.01.T01:intron 45.0%
!! TGTTCTGGAGTTCATTGCTG+AGG + Chr4:91439221-91439240 MsG0480023936.01.T01:CDS 45.0%
!!! CGCTTCTGCTGTTGTTTTTG+GGG + Chr4:91441004-91441023 MsG0480023936.01.T01:intron 45.0%
!!! GCGCTTCTGCTGTTGTTTTT+GGG + Chr4:91441003-91441022 MsG0480023936.01.T01:intron 45.0%
!!! GCTGTTGTTTTTGGGGGTTT+AGG + Chr4:91441011-91441030 MsG0480023936.01.T01:intron 45.0%
!!! GCTTCTGCTGTTGTTTTTGG+GGG + Chr4:91441005-91441024 MsG0480023936.01.T01:intron 45.0%
!!! TGCGCTTCTGCTGTTGTTTT+TGG + Chr4:91441002-91441021 MsG0480023936.01.T01:intron 45.0%
AAAGGACCAGAGTCCAACTC+TGG - Chr4:91442135-91442154 None:intergenic 50.0%
AACTCTTGCCATGGAAGGGT+TGG + Chr4:91439921-91439940 MsG0480023936.01.T01:intron 50.0%
ACAAGCTTGCCCTGAGTTTG+AGG - Chr4:91442624-91442643 None:intergenic 50.0%
ACCCTTCCATGGCAAGAGTT+TGG - Chr4:91439921-91439940 None:intergenic 50.0%
ACTCAGGGCAAGCTTGTGTT+TGG + Chr4:91442627-91442646 MsG0480023936.01.T01:CDS 50.0%
AGCAGCAGGATTCTTGTCCT+TGG - Chr4:91442550-91442569 None:intergenic 50.0%
AGGATTCTTGTCCTTGGACC+CGG - Chr4:91442544-91442563 None:intergenic 50.0%
AGTTTCTTCTTCCGGGTCCA+AGG + Chr4:91442530-91442549 MsG0480023936.01.T01:CDS 50.0%
CAATGGATCCAACCCTTCCA+TGG - Chr4:91439932-91439951 None:intergenic 50.0%
CAGAGTTGCATCCTTGCAAG+AGG - Chr4:91439578-91439597 None:intergenic 50.0%
CATTGAGACCGACTGTGAAG+TGG + Chr4:91441580-91441599 MsG0480023936.01.T01:CDS 50.0%
CCAGAGTCCAACTCTGGTAA+AGG - Chr4:91442129-91442148 None:intergenic 50.0%
CCTTTACCAGAGTTGGACTC+TGG + Chr4:91442126-91442145 MsG0480023936.01.T01:intron 50.0%
CGAGGTGCACTAATAAGCTC+AGG - Chr4:91441248-91441267 None:intergenic 50.0%
CGTCTCCCAGATCCAGTAAA+TGG - Chr4:91442474-91442493 None:intergenic 50.0%
CTCAGGGCAAGCTTGTGTTT+GGG + Chr4:91442628-91442647 MsG0480023936.01.T01:CDS 50.0%
CTGCATGACTAGAAGGTCAC+AGG - Chr4:91440013-91440032 None:intergenic 50.0%
CTGGAGTTCATTGCTGAGGA+AGG + Chr4:91439225-91439244 MsG0480023936.01.T01:CDS 50.0%
CTTATTAGTGCACCTCGCAC+GGG + Chr4:91441251-91441270 MsG0480023936.01.T01:intron 50.0%
GCTATCTCCAGTAGTCAAGC+AGG - Chr4:91441486-91441505 None:intergenic 50.0%
GCTTATTAGTGCACCTCGCA+CGG + Chr4:91441250-91441269 MsG0480023936.01.T01:intron 50.0%
GGCAAACCATTACCAGCTTC+TGG - Chr4:91441674-91441693 None:intergenic 50.0%
GGGGTTTAGGCAGTTCTTTG+TGG + Chr4:91441024-91441043 MsG0480023936.01.T01:intron 50.0%
GGTGCACTAATAAGCTCAGG+TGG - Chr4:91441245-91441264 None:intergenic 50.0%
GTCAGCTGGTTGTGTTCTTG+TGG + Chr4:91440977-91440996 MsG0480023936.01.T01:intron 50.0%
GTGACCTTCTAGTCATGCAG+TGG + Chr4:91440013-91440032 MsG0480023936.01.T01:intron 50.0%
GTGCTACCAAACTCTTGCCA+TGG + Chr4:91439912-91439931 MsG0480023936.01.T01:intron 50.0%
TCTCTCTTTGTAGGCAACCG+AGG + Chr4:91442787-91442806 MsG0480023936.01.T01:intron 50.0%
TTCAGGGAAGCAATTGGTGC+GGG + Chr4:91440633-91440652 MsG0480023936.01.T01:intron 50.0%
TTCGTAATGCTGCTGCTGAG+CGG + Chr4:91439184-91439203 MsG0480023936.01.T01:CDS 50.0%
TTGGACCCGGAAGAAGAAAC+TGG - Chr4:91442531-91442550 None:intergenic 50.0%
! AAGAGTTTGGTAGCACCGGA+CGG - Chr4:91439908-91439927 None:intergenic 50.0%
! GACTCACATGGCCTTAGGAT+TGG - Chr4:91439501-91439520 None:intergenic 50.0%
! GGTGCTGTGTTCGGTTATGA+GGG + Chr4:91440933-91440952 MsG0480023936.01.T01:intron 50.0%
! GTTTTGCTGCATGGGTAGTG+AGG + Chr4:91441074-91441093 MsG0480023936.01.T01:intron 50.0%
! TGGCAAGAGTTTGGTAGCAC+CGG - Chr4:91439912-91439931 None:intergenic 50.0%
! TGTTCGAGCCGATTCCTTTG+TGG + Chr4:91441191-91441210 MsG0480023936.01.T01:intron 50.0%
! TTACTTCGTTGGCCTGTGCA+TGG + Chr4:91442937-91442956 MsG0480023936.01.T01:three_prime_UTR 50.0%
!! ACATCGACTCACATGGCCTT+AGG - Chr4:91439506-91439525 None:intergenic 50.0%
!! GAGGGTAGTTGATGGTAGGA+AGG + Chr4:91440951-91440970 MsG0480023936.01.T01:intron 50.0%
!! GGTAGTTGATGGTAGGAAGG+TGG + Chr4:91440954-91440973 MsG0480023936.01.T01:intron 50.0%
!! TCCCTGAATCCATAGTGGAC+AGG - Chr4:91440621-91440640 None:intergenic 50.0%
AAGGCCCCAGAAGCTGGTAA+TGG + Chr4:91441665-91441684 MsG0480023936.01.T01:intron 55.0%
AATGGGGAGCCTTGGCACAA+TGG - Chr4:91440048-91440067 None:intergenic 55.0%
AGACGATCAAGGGCTGATGG+AGG - Chr4:91439022-91439041 None:intergenic 55.0%
AGGCTGCCTGTTTGTGTTGG+TGG + Chr4:91440671-91440690 MsG0480023936.01.T01:intron 55.0%
ATCCCTAAGAGCCGCAAGCA+CGG - Chr4:91440812-91440831 None:intergenic 55.0%
CACCAGCCACCAACACAAAC+AGG - Chr4:91440680-91440699 None:intergenic 55.0%
CCAAACCGCGGTAAAGAGAC+CGG + Chr4:91442657-91442676 MsG0480023936.01.T01:CDS 55.0%
CCATCAGCCCTTGATCGTCT+AGG + Chr4:91439022-91439041 MsG0480023936.01.T01:CDS 55.0%
CCTAGACGATCAAGGGCTGA+TGG - Chr4:91439025-91439044 None:intergenic 55.0%
CCTTTCCGGTCTCTTTACCG+CGG - Chr4:91442665-91442684 None:intergenic 55.0%
CTGCAGCCCCAACTTGAAAG+TGG + Chr4:91438894-91438913 MsG0480023936.01.T01:intron 55.0%
GATGCTGTTGTGCGACACAC+TGG + Chr4:91440829-91440848 MsG0480023936.01.T01:intron 55.0%
GGCGAAGTCCACTTCACAGT+CGG - Chr4:91441591-91441610 None:intergenic 55.0%
GGGGAAATCGGTTGCCACAA+AGG - Chr4:91441208-91441227 None:intergenic 55.0%
GTGAGGCTGCCTGTTTGTGT+TGG + Chr4:91440668-91440687 MsG0480023936.01.T01:intron 55.0%
TACTGGATCTGGGAGACGCT+TGG + Chr4:91442476-91442495 MsG0480023936.01.T01:CDS 55.0%
TCAGGGAAGCAATTGGTGCG+GGG + Chr4:91440634-91440653 MsG0480023936.01.T01:intron 55.0%
TCGTAATGCTGCTGCTGAGC+GGG + Chr4:91439185-91439204 MsG0480023936.01.T01:CDS 55.0%
! GCGGGGGTAGTTCTTTTGTG+AGG + Chr4:91440651-91440670 MsG0480023936.01.T01:intron 55.0%
! GCTGAGCGGGTTTCTCATTG+TGG + Chr4:91439198-91439217 MsG0480023936.01.T01:CDS 55.0%
! GGGTGCTGTGTTCGGTTATG+AGG + Chr4:91440932-91440951 MsG0480023936.01.T01:intron 55.0%
!! CACTTTCAAGTTGGGGCTGC+AGG - Chr4:91438896-91438915 None:intergenic 55.0%
!! CTGTTGCAGGGTGCTGTGTT+CGG + Chr4:91440924-91440943 MsG0480023936.01.T01:intron 55.0%
!! TGCCTGTTTGTGTTGGTGGC+TGG + Chr4:91440675-91440694 MsG0480023936.01.T01:intron 55.0%
CAGGGAAGCAATTGGTGCGG+GGG + Chr4:91440635-91440654 MsG0480023936.01.T01:intron 60.0%
CCGCGGTAAAGAGACCGGAA+AGG + Chr4:91442662-91442681 MsG0480023936.01.T01:CDS 60.0%
CCGGTCTCTTTACCGCGGTT+TGG - Chr4:91442660-91442679 None:intergenic 60.0%
CGAACACAGCACCCTGCAAC+AGG - Chr4:91440926-91440945 None:intergenic 60.0%
CGCCCCGCCCTTAGATTACA+AGG + Chr4:91441607-91441626 MsG0480023936.01.T01:CDS 60.0%
CTGCATGGGTAGTGAGGCTG+TGG + Chr4:91441080-91441099 MsG0480023936.01.T01:intron 60.0%
GGATCTGGGAGACGCTTGGA+CGG + Chr4:91442480-91442499 MsG0480023936.01.T01:CDS 60.0%
TCCGGCAGAACGTGGAGCAA+CGG - Chr4:91441645-91441664 None:intergenic 60.0%
TGCTCCACGTTCTGCCGGAA+AGG + Chr4:91441646-91441665 MsG0480023936.01.T01:CDS 60.0%
TGGTAGGAAGGTGGGTCAGC+TGG + Chr4:91440963-91440982 MsG0480023936.01.T01:intron 60.0%
TTAACCAACGAGCCCGTGCG+AGG - Chr4:91441266-91441285 None:intergenic 60.0%
! ACACACTGGCTGCCTGTTGC+AGG + Chr4:91440843-91440862 MsG0480023936.01.T01:intron 60.0%
! AGCACAGAAGGACGGACTCC+AGG - Chr4:91440753-91440772 None:intergenic 60.0%
! CACACTGGCTGCCTGTTGCA+GGG + Chr4:91440844-91440863 MsG0480023936.01.T01:intron 60.0%
!! ACCAGCTTCTGGGGCCTTTC+CGG - Chr4:91441663-91441682 None:intergenic 60.0%
!! GCTTTGTGCTTTTGGGGGCG+TGG + Chr4:91440770-91440789 MsG0480023936.01.T01:intron 60.0%
!! TGTTGGTGGCTGGTGTGTGC+TGG + Chr4:91440685-91440704 MsG0480023936.01.T01:intron 60.0%
CAGTGTGGTGGCCGTGCTTG+CGG + Chr4:91440798-91440817 MsG0480023936.01.T01:intron 65.0%
CCCGTTGCTCCACGTTCTGC+CGG + Chr4:91441641-91441660 MsG0480023936.01.T01:CDS 65.0%
CCGGCAGAACGTGGAGCAAC+GGG - Chr4:91441644-91441663 None:intergenic 65.0%
CGTGGAGCAACGGGCCTTTC+AGG - Chr4:91441635-91441654 None:intergenic 65.0%
GCCACACAGCACCCTGCAAC+AGG - Chr4:91440858-91440877 None:intergenic 65.0%
GGCCGTGCTTGCGGCTCTTA+GGG + Chr4:91440807-91440826 MsG0480023936.01.T01:intron 65.0%
GGCGTGGTTCAGCAGTGTGG+TGG + Chr4:91440786-91440805 MsG0480023936.01.T01:intron 65.0%
GTGCTGTGTGGCCGTGCTTG+CGG + Chr4:91440866-91440885 MsG0480023936.01.T01:intron 65.0%
TGGCCGTGCTTGCGGCTCTT+AGG + Chr4:91440806-91440825 MsG0480023936.01.T01:intron 65.0%
!! GCCTGTTGCAGGGTGCTGTG+TGG + Chr4:91440854-91440873 MsG0480023936.01.T01:intron 65.0%
!! GTGGCTGGTGTGTGCTGGCT+GGG + Chr4:91440690-91440709 MsG0480023936.01.T01:intron 65.0%
GCCGGAAAGGCCCCAGAAGC+TGG + Chr4:91441659-91441678 MsG0480023936.01.T01:CDS 70.0%
GGGGCCTTTCCGGCAGAACG+TGG - Chr4:91441653-91441672 None:intergenic 70.0%
TGCACCTCGCACGGGCTCGT+TGG + Chr4:91441259-91441278 MsG0480023936.01.T01:intron 70.0%
! GGGGGCGTGGTTCAGCAGTG+TGG + Chr4:91440783-91440802 MsG0480023936.01.T01:intron 70.0%
! GGTGGCTGGTGTGTGCTGGC+TGG + Chr4:91440689-91440708 MsG0480023936.01.T01:intron 70.0%
!! GCTGGTGTGTGCTGGCTGGG+CGG + Chr4:91440693-91440712 MsG0480023936.01.T01:intron 70.0%
Chromosome Type Strat End Strand Name
Chr4 gene 91438527 91443135 91438527 ID=MsG0480023936.01;Name=MsG0480023936.01
Chr4 mRNA 91438527 91443135 91438527 ID=MsG0480023936.01.T01;Parent=MsG0480023936.01;Name=MsG0480023936.01.T01;_AED=0.44;_eAED=0.44;_QI=0|1|0.87|1|1|1|8|240|322
Chr4 exon 91438527 91438613 91438527 ID=MsG0480023936.01.T01:exon:33939;Parent=MsG0480023936.01.T01
Chr4 exon 91438900 91438924 91438900 ID=MsG0480023936.01.T01:exon:33940;Parent=MsG0480023936.01.T01
Chr4 exon 91439011 91439043 91439011 ID=MsG0480023936.01.T01:exon:33941;Parent=MsG0480023936.01.T01
Chr4 exon 91439148 91439269 91439148 ID=MsG0480023936.01.T01:exon:33942;Parent=MsG0480023936.01.T01
Chr4 exon 91439383 91439513 91439383 ID=MsG0480023936.01.T01:exon:33943;Parent=MsG0480023936.01.T01
Chr4 exon 91441457 91441680 91441457 ID=MsG0480023936.01.T01:exon:33944;Parent=MsG0480023936.01.T01
Chr4 exon 91442433 91442683 91442433 ID=MsG0480023936.01.T01:exon:33945;Parent=MsG0480023936.01.T01
Chr4 exon 91442800 91443135 91442800 ID=MsG0480023936.01.T01:exon:33946;Parent=MsG0480023936.01.T01
Chr4 CDS 91438527 91438613 91438527 ID=MsG0480023936.01.T01:cds;Parent=MsG0480023936.01.T01
Chr4 CDS 91438900 91438924 91438900 ID=MsG0480023936.01.T01:cds;Parent=MsG0480023936.01.T01
Chr4 CDS 91439011 91439043 91439011 ID=MsG0480023936.01.T01:cds;Parent=MsG0480023936.01.T01
Chr4 CDS 91439148 91439269 91439148 ID=MsG0480023936.01.T01:cds;Parent=MsG0480023936.01.T01
Chr4 CDS 91439383 91439513 91439383 ID=MsG0480023936.01.T01:cds;Parent=MsG0480023936.01.T01
Chr4 CDS 91441457 91441680 91441457 ID=MsG0480023936.01.T01:cds;Parent=MsG0480023936.01.T01
Chr4 CDS 91442433 91442683 91442433 ID=MsG0480023936.01.T01:cds;Parent=MsG0480023936.01.T01
Chr4 CDS 91442800 91442895 91442800 ID=MsG0480023936.01.T01:cds;Parent=MsG0480023936.01.T01
Chr4 three_prime_UTR 91442896 91443135 91442896 ID=MsG0480023936.01.T01:three_prime_utr;Parent=MsG0480023936.01.T01
Gene Sequence

>MsG0480023936.01.T01

TTGACACAGTTTTTCGATGGATATGGATATCACGGGACATCGTTTGAGCAGACGTATCGATGTTACCCTGCTTCTTTTATCGAAAAGCCCCAACTTGAAAGTGGTGACAAAATTATAATGCCTCCATCAGCCCTTGATCGTCTAGCATCTCTGCATATTGATTATCCGATGTTGTTTGAACTTCGTAATGCTGCTGCTGAGCGGGTTTCTCATTGTGGTGTTCTGGAGTTCATTGCTGAGGAAGGCATGATATACATGCCATACTGGATGATGGAGAACATGCTTTTACAAGAGGGCGATGTTGTAAGAGTGAAAAATGTGACACTTCCAAAGGGAACATATGTTAAGTTACAGCCTCACACAAAAGACTTCTTGGATATTTCCAATCCTAAGGCCATCTTGGAAACTACATTGAGGAATTTTTCCTGCTTGACTACTGGAGATAGCATTATGGTGGCTTACAATAACAAGAAATATTATATTGATATTGTAGAAAGCAAGCCTGCCAATGCTATAAGCATCATTGAGACCGACTGTGAAGTGGACTTCGCCCCGCCCTTAGATTACAAGGAACCTGAAAGGCCCGTTGCTCCACGTTCTGCCGGAAAGGCCCCAGAAGCTGATAAAGAAGCCCCTGCTGAAACTGAACCAAAGTTCAACCCATTTACTGGATCTGGGAGACGCTTGGACGGAAAGCCTTTGAATTATCAGCCTCCACCAGTTTCTTCTTCCGGGTCCAAGGACAAGAATCCTGCTGCTCAAAATGTCAATTCACAGCCTTCCACAGCTTCTAGTTCACAAAGTAATGCTCCTCAAACTCAGGGCAAGCTTGTGTTTGGGTCAAATCCAAACCGCGGTAAAGAGACCGGAAAGGCAACCGAGGCAAAAGCAAAGCAAGAGCCACCCAAAGAGAAAGAAGAAGATAAGTTTCAGCCTTTCACCGGGAAGAAGTATTCTTTAAGGGGTTGA

Protein sequence

>MsG0480023936.01.T01

LTQFFDGYGYHGTSFEQTYRCYPASFIEKPQLESGDKIIMPPSALDRLASLHIDYPMLFELRNAAAERVSHCGVLEFIAEEGMIYMPYWMMENMLLQEGDVVRVKNVTLPKGTYVKLQPHTKDFLDISNPKAILETTLRNFSCLTTGDSIMVAYNNKKYYIDIVESKPANAISIIETDCEVDFAPPLDYKEPERPVAPRSAGKAPEADKEAPAETEPKFNPFTGSGRRLDGKPLNYQPPPVSSSGSKDKNPAAQNVNSQPSTASSSQSNAPQTQGKLVFGSNPNRGKETGKATEAKAKQEPPKEKEEDKFQPFTGKKYSLRG*