Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0180005859.01.T01 | XP_003592556.1 | 98.758 | 161 | 2 | 0 | 11 | 171 | 106 | 266 | 7.25E-113 | 331 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0180005859.01.T01 | G7IAT6 | 98.758 | 161 | 2 | 0 | 11 | 171 | 106 | 266 | 3.46e-113 | 331 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MsG0180005859.01 | MsG0380015384.01 | 0.824818 | 6.566940e-54 | 5.881219e-51 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0180005859.01.T01 | MTR_1g108490 | 98.758 | 161 | 2 | 0 | 11 | 171 | 106 | 266 | 8.78e-117 | 331 |
| MsG0180005859.01.T01 | MTR_1g108490 | 98.039 | 102 | 2 | 0 | 11 | 112 | 106 | 207 | 1.42e-71 | 215 |
| MsG0180005859.01.T01 | MTR_7g082950 | 37.748 | 151 | 82 | 4 | 17 | 163 | 68 | 210 | 9.31e-30 | 108 |
| MsG0180005859.01.T01 | MTR_7g109460 | 28.571 | 161 | 104 | 3 | 10 | 169 | 68 | 218 | 1.01e-19 | 82.8 |
| MsG0180005859.01.T01 | MTR_8g467220 | 35.338 | 133 | 83 | 2 | 13 | 143 | 116 | 247 | 1.09e-16 | 75.9 |
| MsG0180005859.01.T01 | MTR_7g082950 | 43.000 | 100 | 45 | 4 | 17 | 112 | 68 | 159 | 1.57e-16 | 72.8 |
| MsG0180005859.01.T01 | MTR_5g040650 | 35.294 | 136 | 84 | 3 | 11 | 143 | 117 | 251 | 2.51e-14 | 69.3 |
| MsG0180005859.01.T01 | MTR_5g040650 | 33.582 | 134 | 86 | 2 | 11 | 141 | 117 | 250 | 4.63e-14 | 68.2 |
| MsG0180005859.01.T01 | MTR_7g109460 | 32.692 | 104 | 62 | 2 | 10 | 112 | 68 | 164 | 5.32e-12 | 61.2 |
| MsG0180005859.01.T01 | MTR_1g087150 | 32.727 | 165 | 98 | 4 | 10 | 167 | 68 | 226 | 1.49e-11 | 60.8 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0180005859.01.T01 | AT2G01275 | 51.163 | 129 | 57 | 2 | 11 | 139 | 106 | 228 | 1.50e-40 | 137 |
| MsG0180005859.01.T01 | AT2G01275 | 51.163 | 129 | 57 | 2 | 11 | 139 | 106 | 228 | 1.50e-40 | 137 |
| MsG0180005859.01.T01 | AT2G01275 | 51.163 | 129 | 57 | 2 | 11 | 139 | 106 | 228 | 1.50e-40 | 137 |
| MsG0180005859.01.T01 | AT2G01275 | 51.163 | 129 | 57 | 2 | 11 | 139 | 132 | 254 | 1.87e-40 | 138 |
| MsG0180005859.01.T01 | AT2G01275 | 51.163 | 129 | 57 | 2 | 11 | 139 | 132 | 254 | 1.87e-40 | 138 |
| MsG0180005859.01.T01 | AT5G38070 | 37.931 | 145 | 83 | 2 | 11 | 155 | 101 | 238 | 6.49e-21 | 86.7 |
| MsG0180005859.01.T01 | AT2G02960 | 36.296 | 135 | 83 | 2 | 11 | 143 | 90 | 223 | 1.72e-18 | 80.5 |
| MsG0180005859.01.T01 | AT2G02960 | 36.296 | 135 | 83 | 2 | 11 | 143 | 90 | 223 | 1.72e-18 | 80.5 |
| MsG0180005859.01.T01 | AT2G02960 | 36.296 | 135 | 83 | 2 | 11 | 143 | 90 | 223 | 1.72e-18 | 80.5 |
| MsG0180005859.01.T01 | AT2G02960 | 36.296 | 135 | 83 | 2 | 11 | 143 | 90 | 223 | 1.72e-18 | 80.5 |
| MsG0180005859.01.T01 | AT2G02960 | 36.296 | 135 | 83 | 2 | 11 | 143 | 90 | 223 | 1.72e-18 | 80.5 |
| MsG0180005859.01.T01 | AT1G14260 | 32.394 | 142 | 92 | 2 | 11 | 150 | 104 | 243 | 8.85e-13 | 64.7 |
| MsG0180005859.01.T01 | AT1G14260 | 32.394 | 142 | 92 | 2 | 11 | 150 | 104 | 243 | 8.85e-13 | 64.7 |
| MsG0180005859.01.T01 | AT1G14260 | 32.394 | 142 | 92 | 2 | 11 | 150 | 104 | 243 | 8.85e-13 | 64.7 |
| MsG0180005859.01.T01 | AT1G02610 | 26.415 | 159 | 112 | 3 | 10 | 167 | 66 | 220 | 4.93e-11 | 59.3 |
| MsG0180005859.01.T01 | AT4G02075 | 29.710 | 138 | 86 | 3 | 10 | 147 | 66 | 192 | 6.73e-11 | 58.9 |
Find 55 sgRNAs with CRISPR-Local
Find 95 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GACGTATTCCAATGAGTTTC+AGG | 0.200352 | 1:+96952398 | MsG0180005859.01.T01:CDS |
| GGTTCTGATTTGATGGAAAT+TGG | 0.248365 | 1:+96953299 | MsG0180005859.01.T01:three_prime_UTR |
| TTTGATAGGTGTTATTATTT+CGG | 0.280078 | 1:+96952925 | MsG0180005859.01.T01:intron |
| TACTCATCAGCAAGTCTTGC+AGG | 0.281475 | 1:+96953474 | MsG0180005859.01.T01:three_prime_UTR |
| TATGGCTAGATAATTATAAA+AGG | 0.294024 | 1:+96953576 | MsG0180005859.01.T01:three_prime_UTR |
| CAGTTCTAGCTGCTGCAATT+TGG | 0.317403 | 1:+96953278 | MsG0180005859.01.T01:three_prime_UTR |
| CGTTGTACCTATATACTTCA+TGG | 0.319663 | 1:+96952959 | MsG0180005859.01.T01:CDS |
| GCAATTTGGTTCTGATTTGA+TGG | 0.351198 | 1:+96953292 | MsG0180005859.01.T01:three_prime_UTR |
| TCAATATTCAACCTCTTCTT+CGG | 0.364674 | 1:+96952620 | MsG0180005859.01.T01:CDS |
| CAATATTCAACCTCTTCTTC+GGG | 0.377237 | 1:+96952621 | MsG0180005859.01.T01:CDS |
| CAAACTTCATTTACATAAAG+TGG | 0.383036 | 1:-96953247 | None:intergenic |
| TACACTAAATGCATGATATG+AGG | 0.394900 | 1:-96953212 | None:intergenic |
| GATGAGTAAGACATTATTAC+AGG | 0.403630 | 1:-96953459 | None:intergenic |
| AGATTTAAACAGCACTCATT+TGG | 0.409471 | 1:+96952551 | MsG0180005859.01.T01:CDS |
| ATAGCTAATAGAGGCATTGC+AGG | 0.419589 | 1:+96953417 | MsG0180005859.01.T01:three_prime_UTR |
| GCTCTAACCATGAAGTATAT+AGG | 0.421934 | 1:-96952966 | None:intergenic |
| CAAATTGCAGCAGCTAGAAC+TGG | 0.425124 | 1:-96953277 | None:intergenic |
| GGAGGAGGAGCTGTGTAATC+AGG | 0.426781 | 1:-96952361 | None:intergenic |
| GATCATAGTTAGAATTGATA+AGG | 0.427640 | 1:-96952599 | None:intergenic |
| ACTCTTCCCCTCGTAATTAG+TGG | 0.439633 | 1:+96952794 | MsG0180005859.01.T01:CDS |
| ATCCTCACTCAGCAAAATCA+AGG | 0.445155 | 1:-96953342 | None:intergenic |
| GGAAGTTACCTGAAACTCAT+TGG | 0.451447 | 1:-96952406 | None:intergenic |
| AAAACAATATTCTAAGTGTA+TGG | 0.453861 | 1:+96953558 | MsG0180005859.01.T01:three_prime_UTR |
| CTACAATCTTGCACACGATA+AGG | 0.455383 | 1:+96953611 | MsG0180005859.01.T01:three_prime_UTR |
| GATGTTGTCTCCGATGTCGC+TGG | 0.455481 | 1:-96953001 | None:intergenic |
| TTAATTTCCAACTAAAGAAA+AGG | 0.457148 | 1:+96953638 | MsG0180005859.01.T01:three_prime_UTR |
| GTGTTATTATTTCGGAGTGC+TGG | 0.463426 | 1:+96952933 | MsG0180005859.01.T01:CDS |
| TGCAGAACATACCATGAAAA+GGG | 0.471798 | 1:-96952837 | None:intergenic |
| ATGCAGAACATACCATGAAA+AGG | 0.472006 | 1:-96952838 | None:intergenic |
| CAGCACTCATTTGGTTAGCA+TGG | 0.474734 | 1:+96952560 | MsG0180005859.01.T01:CDS |
| GCAAGGTTTCACACGTTAGC+CGG | 0.492590 | 1:+96953684 | MsG0180005859.01.T01:three_prime_UTR |
| TTTCTATATATAATAGTGTC+CGG | 0.494394 | 1:-96953703 | None:intergenic |
| GCTGTGTAATCAGGCTTGAA+TGG | 0.517289 | 1:-96952352 | None:intergenic |
| AGTTAGAATTGATAAGGCTC+TGG | 0.529910 | 1:-96952593 | None:intergenic |
| TTGATAAGGCTCTGGTCAGT+GGG | 0.533518 | 1:-96952585 | None:intergenic |
| ACACATGTAAATAACAAAGA+TGG | 0.538566 | 1:+96953729 | MsG0180005859.01.T01:three_prime_UTR |
| AACAAAACTTATCGTGTGCA+AGG | 0.550818 | 1:+96953667 | MsG0180005859.01.T01:three_prime_UTR |
| TTAGGAGCATCCTAGTGCCT+TGG | 0.550967 | 1:+96953142 | MsG0180005859.01.T01:intron |
| AAAGGTGTCATAGCTAATAG+AGG | 0.556116 | 1:+96953408 | MsG0180005859.01.T01:three_prime_UTR |
| TCTGATTTGATGGAAATTGG+TGG | 0.558737 | 1:+96953302 | MsG0180005859.01.T01:three_prime_UTR |
| ATGTCGCTGGATTAGTGCCA+TGG | 0.565134 | 1:-96952988 | None:intergenic |
| ATTGATAAGGCTCTGGTCAG+TGG | 0.565136 | 1:-96952586 | None:intergenic |
| CTTTATTTCCACTAATTACG+AGG | 0.578088 | 1:-96952802 | None:intergenic |
| TGGCACTAATCCAGCGACAT+CGG | 0.579543 | 1:+96952991 | MsG0180005859.01.T01:CDS |
| TATCAAACTTCCCGAAGAAG+AGG | 0.579750 | 1:-96952631 | None:intergenic |
| TTTATTTCCACTAATTACGA+GGG | 0.580239 | 1:-96952801 | None:intergenic |
| ATACTTCATGGTTAGAGCCA+TGG | 0.584564 | 1:+96952971 | MsG0180005859.01.T01:CDS |
| GATGAACTGACCAAGGCACT+AGG | 0.595162 | 1:-96953152 | None:intergenic |
| GATTTGATGGAAATTGGTGG+AGG | 0.601834 | 1:+96953305 | MsG0180005859.01.T01:three_prime_UTR |
| GCAGAACATACCATGAAAAG+GGG | 0.623505 | 1:-96952836 | None:intergenic |
| TTCATCTGATGATGAAATCG+AGG | 0.624901 | 1:+96953169 | MsG0180005859.01.T01:CDS |
| ATCATCAGATGAACTGACCA+AGG | 0.647819 | 1:-96953159 | None:intergenic |
| CAGAACATACCATGAAAAGG+GGG | 0.660863 | 1:-96952835 | None:intergenic |
| TAGCTAATAGAGGCATTGCA+GGG | 0.683865 | 1:+96953418 | MsG0180005859.01.T01:three_prime_UTR |
| TTATTTCCACTAATTACGAG+GGG | 0.695633 | 1:-96952800 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAAATGAAAATATTGTGCA+TGG | - | Chr1:96952430-96952449 | None:intergenic | 20.0% |
| !! | AAAACAATATTCTAAGTGTA+TGG | + | Chr1:96953558-96953577 | MsG0180005859.01.T01:three_prime_UTR | 20.0% |
| !! | TATGGCTAGATAATTATAAA+AGG | + | Chr1:96953576-96953595 | MsG0180005859.01.T01:three_prime_UTR | 20.0% |
| !! | TTAATTTCCAACTAAAGAAA+AGG | + | Chr1:96953638-96953657 | MsG0180005859.01.T01:three_prime_UTR | 20.0% |
| !! | TTTCTATATATAATAGTGTC+CGG | - | Chr1:96953706-96953725 | None:intergenic | 20.0% |
| !!! | TTTGATAGGTGTTATTATTT+CGG | + | Chr1:96952925-96952944 | MsG0180005859.01.T01:intron | 20.0% |
| ! | ACACATGTAAATAACAAAGA+TGG | + | Chr1:96953729-96953748 | MsG0180005859.01.T01:three_prime_UTR | 25.0% |
| ! | AGGGTTAACATATTAACTTA+AGG | - | Chr1:96952459-96952478 | None:intergenic | 25.0% |
| ! | CAAACTTCATTTACATAAAG+TGG | - | Chr1:96953250-96953269 | None:intergenic | 25.0% |
| ! | GATCATAGTTAGAATTGATA+AGG | - | Chr1:96952602-96952621 | None:intergenic | 25.0% |
| ! | TTTATTTCCACTAATTACGA+GGG | - | Chr1:96952804-96952823 | None:intergenic | 25.0% |
| !! | TGATTTTCCTTTTCTTTAGT+TGG | - | Chr1:96953648-96953667 | None:intergenic | 25.0% |
| AGATTTAAACAGCACTCATT+TGG | + | Chr1:96952551-96952570 | MsG0180005859.01.T01:CDS | 30.0% | |
| ATAACATACAATTTCAGCGA+TGG | + | Chr1:96952859-96952878 | MsG0180005859.01.T01:intron | 30.0% | |
| CATGAATCTTCATATACTCA+CGG | + | Chr1:96953079-96953098 | MsG0180005859.01.T01:intron | 30.0% | |
| CTAATAGTTACAAATGACCA+AGG | - | Chr1:96953126-96953145 | None:intergenic | 30.0% | |
| CTTGGTCATTTGTAACTATT+AGG | + | Chr1:96953124-96953143 | MsG0180005859.01.T01:intron | 30.0% | |
| GATGAGTAAGACATTATTAC+AGG | - | Chr1:96953462-96953481 | None:intergenic | 30.0% | |
| TACACTAAATGCATGATATG+AGG | - | Chr1:96953215-96953234 | None:intergenic | 30.0% | |
| TCAATATTCAACCTCTTCTT+CGG | + | Chr1:96952620-96952639 | MsG0180005859.01.T01:CDS | 30.0% | |
| TTATTTCCACTAATTACGAG+GGG | - | Chr1:96952803-96952822 | None:intergenic | 30.0% | |
| ! | AAAATGGCATCGAAAAAACA+GGG | - | Chr1:96952478-96952497 | None:intergenic | 30.0% |
| ! | AAAGGCATACATTCTTTAGA+AGG | - | Chr1:96952697-96952716 | None:intergenic | 30.0% |
| ! | AAGGCATACATTCTTTAGAA+GGG | - | Chr1:96952696-96952715 | None:intergenic | 30.0% |
| ! | ATTCCAATGCTGTTTATATC+AGG | + | Chr1:96952505-96952524 | MsG0180005859.01.T01:intron | 30.0% |
| ! | CTTTATTTCCACTAATTACG+AGG | - | Chr1:96952805-96952824 | None:intergenic | 30.0% |
| ! | GAAATTTTTCTAAGTCGCAA+AGG | + | Chr1:96953390-96953409 | MsG0180005859.01.T01:three_prime_UTR | 30.0% |
| ! | TTCCAATGCTGTTTATATCA+GGG | + | Chr1:96952506-96952525 | MsG0180005859.01.T01:intron | 30.0% |
| ! | TTTTGATCATTCTCTTACCA+AGG | + | Chr1:96952882-96952901 | MsG0180005859.01.T01:intron | 30.0% |
| !! | CAATTTGATGGAGTTTTGAT+AGG | + | Chr1:96952911-96952930 | MsG0180005859.01.T01:intron | 30.0% |
| AACAAAACTTATCGTGTGCA+AGG | + | Chr1:96953667-96953686 | MsG0180005859.01.T01:three_prime_UTR | 35.0% | |
| AGTTAGAATTGATAAGGCTC+TGG | - | Chr1:96952596-96952615 | None:intergenic | 35.0% | |
| ATACGTCCAAACTGAAAAAG+TGG | - | Chr1:96952385-96952404 | None:intergenic | 35.0% | |
| ATGAAGATTCATGTACCCAA+TGG | - | Chr1:96953072-96953091 | None:intergenic | 35.0% | |
| ATGCAGAACATACCATGAAA+AGG | - | Chr1:96952841-96952860 | None:intergenic | 35.0% | |
| CAATATTCAACCTCTTCTTC+GGG | + | Chr1:96952621-96952640 | MsG0180005859.01.T01:CDS | 35.0% | |
| CATTGGAATGCATTGGAAAA+TGG | - | Chr1:96952494-96952513 | None:intergenic | 35.0% | |
| CCATCAAATTGAGAAAACCT+TGG | - | Chr1:96952902-96952921 | None:intergenic | 35.0% | |
| CGTTGTACCTATATACTTCA+TGG | + | Chr1:96952959-96952978 | MsG0180005859.01.T01:CDS | 35.0% | |
| GCTCTAACCATGAAGTATAT+AGG | - | Chr1:96952969-96952988 | None:intergenic | 35.0% | |
| GGCGAAGAGACAAAAAAAAA+AGG | - | Chr1:96953051-96953070 | None:intergenic | 35.0% | |
| TATACTCACGGTAAATTCTC+TGG | + | Chr1:96953091-96953110 | MsG0180005859.01.T01:intron | 35.0% | |
| TGCAGAACATACCATGAAAA+GGG | - | Chr1:96952840-96952859 | None:intergenic | 35.0% | |
| TGTTTATATCAGGGGGAATT+GGG | + | Chr1:96952515-96952534 | MsG0180005859.01.T01:intron | 35.0% | |
| ! | CCAAGGTTTTCTCAATTTGA+TGG | + | Chr1:96952899-96952918 | MsG0180005859.01.T01:intron | 35.0% |
| ! | GAAAATGGCATCGAAAAAAC+AGG | - | Chr1:96952479-96952498 | None:intergenic | 35.0% |
| ! | GGTTCTGATTTGATGGAAAT+TGG | + | Chr1:96953299-96953318 | MsG0180005859.01.T01:three_prime_UTR | 35.0% |
| ! | TAAACAGCATTGGAATGCAT+TGG | - | Chr1:96952501-96952520 | None:intergenic | 35.0% |
| ! | TCCAATGCTGTTTATATCAG+GGG | + | Chr1:96952507-96952526 | MsG0180005859.01.T01:intron | 35.0% |
| ! | TCTGATTTGATGGAAATTGG+TGG | + | Chr1:96953302-96953321 | MsG0180005859.01.T01:three_prime_UTR | 35.0% |
| ! | TTCATCTGATGATGAAATCG+AGG | + | Chr1:96953169-96953188 | MsG0180005859.01.T01:CDS | 35.0% |
| !! | AAAGGTGTCATAGCTAATAG+AGG | + | Chr1:96953408-96953427 | MsG0180005859.01.T01:three_prime_UTR | 35.0% |
| !! | GCAATTTGGTTCTGATTTGA+TGG | + | Chr1:96953292-96953311 | MsG0180005859.01.T01:three_prime_UTR | 35.0% |
| !!! | TTCTCTGGTGTTTTTTTCCT+TGG | + | Chr1:96953106-96953125 | MsG0180005859.01.T01:intron | 35.0% |
| !!! | TTTTTTGTCTCTTCGCCATT+GGG | + | Chr1:96953054-96953073 | MsG0180005859.01.T01:intron | 35.0% |
| !!! | TTTTTTTGTCTCTTCGCCAT+TGG | + | Chr1:96953053-96953072 | MsG0180005859.01.T01:intron | 35.0% |
| ATACTTCATGGTTAGAGCCA+TGG | + | Chr1:96952971-96952990 | MsG0180005859.01.T01:CDS | 40.0% | |
| ATCATCAGATGAACTGACCA+AGG | - | Chr1:96953162-96953181 | None:intergenic | 40.0% | |
| ATCCTCACTCAGCAAAATCA+AGG | - | Chr1:96953345-96953364 | None:intergenic | 40.0% | |
| ATGTATGCCTTTACACGTTC+TGG | + | Chr1:96952705-96952724 | MsG0180005859.01.T01:intron | 40.0% | |
| CAGAACATACCATGAAAAGG+GGG | - | Chr1:96952838-96952857 | None:intergenic | 40.0% | |
| CTACAATCTTGCACACGATA+AGG | + | Chr1:96953611-96953630 | MsG0180005859.01.T01:three_prime_UTR | 40.0% | |
| CTGTTTATATCAGGGGGAAT+TGG | + | Chr1:96952514-96952533 | MsG0180005859.01.T01:intron | 40.0% | |
| GACGTATTCCAATGAGTTTC+AGG | + | Chr1:96952398-96952417 | MsG0180005859.01.T01:CDS | 40.0% | |
| GATTTGATGGAAATTGGTGG+AGG | + | Chr1:96953305-96953324 | MsG0180005859.01.T01:three_prime_UTR | 40.0% | |
| GCAGAACATACCATGAAAAG+GGG | - | Chr1:96952839-96952858 | None:intergenic | 40.0% | |
| GGAAGTTACCTGAAACTCAT+TGG | - | Chr1:96952409-96952428 | None:intergenic | 40.0% | |
| TATCAAACTTCCCGAAGAAG+AGG | - | Chr1:96952634-96952653 | None:intergenic | 40.0% | |
| TTCTTCTCATGTGCAGTTCA+TGG | + | Chr1:96952751-96952770 | MsG0180005859.01.T01:intron | 40.0% | |
| ! | AACCTTGATTTTGCTGAGTG+AGG | + | Chr1:96953340-96953359 | MsG0180005859.01.T01:three_prime_UTR | 40.0% |
| ! | CCAATGCTGTTTATATCAGG+GGG | + | Chr1:96952508-96952527 | MsG0180005859.01.T01:intron | 40.0% |
| ! | CTATTCTTTCCCCCTTTTCA+TGG | + | Chr1:96952826-96952845 | MsG0180005859.01.T01:CDS | 40.0% |
| ! | GTGTTATTATTTCGGAGTGC+TGG | + | Chr1:96952933-96952952 | MsG0180005859.01.T01:CDS | 40.0% |
| !! | ATAGCTAATAGAGGCATTGC+AGG | + | Chr1:96953417-96953436 | MsG0180005859.01.T01:three_prime_UTR | 40.0% |
| !! | TAGCTAATAGAGGCATTGCA+GGG | + | Chr1:96953418-96953437 | MsG0180005859.01.T01:three_prime_UTR | 40.0% |
| ACTCTTCCCCTCGTAATTAG+TGG | + | Chr1:96952794-96952813 | MsG0180005859.01.T01:CDS | 45.0% | |
| CAAATTGCAGCAGCTAGAAC+TGG | - | Chr1:96953280-96953299 | None:intergenic | 45.0% | |
| CAGCACTCATTTGGTTAGCA+TGG | + | Chr1:96952560-96952579 | MsG0180005859.01.T01:CDS | 45.0% | |
| CCAAACTGAAAAAGTGGAGG+AGG | - | Chr1:96952379-96952398 | None:intergenic | 45.0% | |
| CCCCCTGATATAAACAGCAT+TGG | - | Chr1:96952511-96952530 | None:intergenic | 45.0% | |
| CGTCCAAACTGAAAAAGTGG+AGG | - | Chr1:96952382-96952401 | None:intergenic | 45.0% | |
| GCTGTGTAATCAGGCTTGAA+TGG | - | Chr1:96952355-96952374 | None:intergenic | 45.0% | |
| GTCGTAACCAGAACGTGTAA+AGG | - | Chr1:96952715-96952734 | None:intergenic | 45.0% | |
| TACTCATCAGCAAGTCTTGC+AGG | + | Chr1:96953474-96953493 | MsG0180005859.01.T01:three_prime_UTR | 45.0% | |
| ! | ATTGATAAGGCTCTGGTCAG+TGG | - | Chr1:96952589-96952608 | None:intergenic | 45.0% |
| ! | CAGTTCTAGCTGCTGCAATT+TGG | + | Chr1:96953278-96953297 | MsG0180005859.01.T01:three_prime_UTR | 45.0% |
| ! | TTGATAAGGCTCTGGTCAGT+GGG | - | Chr1:96952588-96952607 | None:intergenic | 45.0% |
| !!! | CCTCCTCCACTTTTTCAGTT+TGG | + | Chr1:96952376-96952395 | MsG0180005859.01.T01:CDS | 45.0% |
| GCAAGGTTTCACACGTTAGC+CGG | + | Chr1:96953684-96953703 | MsG0180005859.01.T01:three_prime_UTR | 50.0% | |
| TGGCACTAATCCAGCGACAT+CGG | + | Chr1:96952991-96953010 | MsG0180005859.01.T01:CDS | 50.0% | |
| ! | GATGAACTGACCAAGGCACT+AGG | - | Chr1:96953155-96953174 | None:intergenic | 50.0% |
| !! | ATGTCGCTGGATTAGTGCCA+TGG | - | Chr1:96952991-96953010 | None:intergenic | 50.0% |
| !! | TTAGGAGCATCCTAGTGCCT+TGG | + | Chr1:96953142-96953161 | MsG0180005859.01.T01:intron | 50.0% |
| GATGTTGTCTCCGATGTCGC+TGG | - | Chr1:96953004-96953023 | None:intergenic | 55.0% | |
| GGAGGAGGAGCTGTGTAATC+AGG | - | Chr1:96952364-96952383 | None:intergenic | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| Chr1 | gene | 96952319 | 96953801 | 96952319 | ID=MsG0180005859.01;Name=MsG0180005859.01 |
| Chr1 | mRNA | 96952319 | 96953801 | 96952319 | ID=MsG0180005859.01.T01;Parent=MsG0180005859.01;Name=MsG0180005859.01.T01;_AED=0.39;_eAED=0.40;_QI=0|0.75|0.6|1|1|1|5|566|171 |
| Chr1 | exon | 96952319 | 96952419 | 96952319 | ID=MsG0180005859.01.T01:exon:16258;Parent=MsG0180005859.01.T01 |
| Chr1 | exon | 96952527 | 96952677 | 96952527 | ID=MsG0180005859.01.T01:exon:16259;Parent=MsG0180005859.01.T01 |
| Chr1 | exon | 96952767 | 96952847 | 96952767 | ID=MsG0180005859.01.T01:exon:16260;Parent=MsG0180005859.01.T01 |
| Chr1 | exon | 96952933 | 96953025 | 96952933 | ID=MsG0180005859.01.T01:exon:16261;Parent=MsG0180005859.01.T01 |
| Chr1 | exon | 96953146 | 96953801 | 96953146 | ID=MsG0180005859.01.T01:exon:16262;Parent=MsG0180005859.01.T01 |
| Chr1 | CDS | 96952319 | 96952419 | 96952319 | ID=MsG0180005859.01.T01:cds;Parent=MsG0180005859.01.T01 |
| Chr1 | CDS | 96952527 | 96952677 | 96952527 | ID=MsG0180005859.01.T01:cds;Parent=MsG0180005859.01.T01 |
| Chr1 | CDS | 96952767 | 96952847 | 96952767 | ID=MsG0180005859.01.T01:cds;Parent=MsG0180005859.01.T01 |
| Chr1 | CDS | 96952933 | 96953025 | 96952933 | ID=MsG0180005859.01.T01:cds;Parent=MsG0180005859.01.T01 |
| Chr1 | CDS | 96953146 | 96953235 | 96953146 | ID=MsG0180005859.01.T01:cds;Parent=MsG0180005859.01.T01 |
| Chr1 | three_prime_UTR | 96953236 | 96953801 | 96953236 | ID=MsG0180005859.01.T01:three_prime_utr;Parent=MsG0180005859.01.T01 |
| Gene Sequence |
| Protein sequence |
