AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0280006507.01

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0280006507.01.T02 MTR_2g009720 93.478 184 10 1 1 182 1 184 5.06e-117 333
MsG0280006507.01.T02 MTR_2g009720 93.478 184 10 1 1 182 1 184 5.22e-117 333
MsG0280006507.01.T02 MTR_5g083210 60.326 184 70 1 2 182 1 184 6.74e-81 241
MsG0280006507.01.T02 MTR_4g093250 62.222 180 63 1 8 182 9 188 1.51e-72 221
MsG0280006507.01.T01 MTR_2g009720 93.478 184 10 1 1 182 1 184 5.06e-117 333
MsG0280006507.01.T01 MTR_2g009720 93.478 184 10 1 1 182 1 184 5.22e-117 333
MsG0280006507.01.T01 MTR_5g083210 60.326 184 70 1 2 182 1 184 6.74e-81 241
MsG0280006507.01.T01 MTR_4g093250 62.222 180 63 1 8 182 9 188 1.51e-72 221
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0280006507.01.T02 AT2G23970 42.077 183 99 1 7 182 5 187 1.68e-54 174
MsG0280006507.01.T02 AT4G30550 40.323 186 103 1 6 183 6 191 7.06e-51 165
MsG0280006507.01.T02 AT4G30540 42.246 187 101 2 1 182 1 185 1.33e-50 164
MsG0280006507.01.T02 AT4G30530 39.785 186 105 1 5 183 2 187 2.30e-48 158
MsG0280006507.01.T02 AT2G23960 39.106 179 102 1 5 176 2 180 1.10e-47 155
MsG0280006507.01.T02 AT2G23960 39.106 179 102 1 5 176 2 180 1.49e-47 156
MsG0280006507.01.T01 AT2G23970 42.077 183 99 1 7 182 5 187 1.68e-54 174
MsG0280006507.01.T01 AT4G30550 40.323 186 103 1 6 183 6 191 7.06e-51 165
MsG0280006507.01.T01 AT4G30540 42.246 187 101 2 1 182 1 185 1.33e-50 164
MsG0280006507.01.T01 AT4G30530 39.785 186 105 1 5 183 2 187 2.30e-48 158
MsG0280006507.01.T01 AT2G23960 39.106 179 102 1 5 176 2 180 1.10e-47 155
MsG0280006507.01.T01 AT2G23960 39.106 179 102 1 5 176 2 180 1.49e-47 156

Find 44 sgRNAs with CRISPR-Local

Find 198 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GCAAATAAAACTTATAAATA+AGG 0.230345 2:+2890734 None:intergenic
TTAATATTACAGTTGAATAT+TGG 0.245600 2:+2890381 None:intergenic
TAATATTACAGTTGAATATT+GGG 0.282965 2:+2890382 None:intergenic
CCTGCTGAAGCAGAGGTAAT+TGG 0.304947 2:-2891276 MsG0280006507.01.T01:CDS
TATGTTTAAGATTATTAGTA+TGG 0.329036 2:+2891062 None:intergenic
AGACTGGAATTGAGATGTTT+AGG 0.334640 2:-2891242 MsG0280006507.01.T01:CDS
ACATAATATACATGAACTTA+AGG 0.365705 2:-2891044 MsG0280006507.01.T01:intron
AAGATGTCAATGTTGAATTC+AGG 0.370725 2:+2891187 None:intergenic
ATGTGGATGTTTGGAATTGC+AGG 0.391755 2:-2890625 MsG0280006507.01.T01:intron
GAGTATAATATGTGGATGTT+TGG 0.396772 2:-2890634 MsG0280006507.01.T01:intron
CATCACAAAGCAAGGGGATA+AGG 0.410455 2:+2890773 None:intergenic
TATATTGCTCTTGTTTGAGT+TGG 0.411288 2:+2890694 None:intergenic
CATGGAATGGGATCAGAATC+TGG 0.413815 2:-2890891 MsG0280006507.01.T01:intron
CATAATATACATGAACTTAA+GGG 0.435309 2:-2891043 MsG0280006507.01.T01:intron
TACGTACCTGGATTAAATTA+CGG 0.443578 2:+2891138 None:intergenic
TTAAATTACGGTTAGTGATA+CGG 0.464304 2:+2891150 None:intergenic
AAATCAGAAGATTTGATCCA+TGG 0.464593 2:-2890909 MsG0280006507.01.T01:intron
TGTTGAATTCAGGATGGCCT+TGG 0.468204 2:+2891197 None:intergenic
AAAATCTATACGTCTATAAG+TGG 0.483591 2:-2890952 MsG0280006507.01.T01:intron
GGAATTGAGATGTTTAGGTA+TGG 0.499218 2:-2891237 MsG0280006507.01.T01:CDS
GAAGATTTGATCCATGGAAT+GGG 0.505814 2:-2890903 MsG0280006507.01.T01:intron
CCAATTACCTCTGCTTCAGC+AGG 0.508145 2:+2891276 None:intergenic
AGAAGATTTGATCCATGGAA+TGG 0.511287 2:-2890904 MsG0280006507.01.T01:intron
TATAAATAAGGACAAAGATA+AGG 0.513074 2:+2890746 None:intergenic
CTTTGTCTCACATTTCTGAA+AGG 0.513703 2:-2890534 MsG0280006507.01.T01:three_prime_UTR
TGCTTCGCATGTAAAGATGA+AGG 0.533024 2:-2890595 MsG0280006507.01.T01:three_prime_UTR
ATTGGTTGGTCAGAAAAGAC+TGG 0.534534 2:-2891258 MsG0280006507.01.T01:CDS
AAATCACATGTGGGCATCCA+AGG 0.537237 2:-2891214 MsG0280006507.01.T01:CDS
CACTAACCGTAATTTAATCC+AGG 0.545302 2:-2891144 MsG0280006507.01.T01:intron
CAGATTCTGATCCCATTCCA+TGG 0.562600 2:+2890892 None:intergenic
AAGGCATACATCACAAAGCA+AGG 0.572284 2:+2890765 None:intergenic
AGACAAAAGAGTATAATATG+TGG 0.578187 2:-2890642 MsG0280006507.01.T01:intron
AGATTTGCCTGCTGAAGCAG+AGG 0.607007 2:-2891283 MsG0280006507.01.T01:CDS
GAGATCCAGACACAGAGGCA+TGG 0.621789 2:-2890563 MsG0280006507.01.T01:three_prime_UTR
AGGCATACATCACAAAGCAA+GGG 0.627216 2:+2890766 None:intergenic
GGCATACATCACAAAGCAAG+GGG 0.634882 2:+2890767 None:intergenic
CTGAAGCAGAGGTAATTGGT+TGG 0.642332 2:-2891272 MsG0280006507.01.T01:CDS
TAGGTATGGAAATCACATGT+GGG 0.646055 2:-2891223 MsG0280006507.01.T01:CDS
GTGTGTAAATAATACGTACC+TGG 0.662699 2:+2891126 None:intergenic
TTAGGTATGGAAATCACATG+TGG 0.674551 2:-2891224 MsG0280006507.01.T01:CDS
TGTCAATGTTGAATTCAGGA+TGG 0.677095 2:+2891191 None:intergenic
AGCATATCTGAATGATGACG+AGG 0.683537 2:+2891098 None:intergenic
ATTACGAGATCCAGACACAG+AGG 0.767805 2:-2890568 MsG0280006507.01.T01:three_prime_UTR
GTGACTCATTGTACTGCACG+TGG 0.767912 2:+2890846 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAATATACTTATATAAGTT+CGG - Chr2:2890999-2891018 MsG0280006507.01.T01:intron 10.0%
!!! AAAAATATTTTAAACATTTG+TGG + Chr2:2892442-2892461 None:intergenic 10.0%
!!! AAATGTTTAAAATATTTTTG+CGG - Chr2:2892443-2892462 MsG0280006507.01.T01:intron 10.0%
!!! ATATAATATATGATAATGAT+TGG - Chr2:2891250-2891269 MsG0280006507.01.T01:CDS 10.0%
!!! TATTAATAAAGTACTAATTT+AGG + Chr2:2891523-2891542 None:intergenic 10.0%
!!! TGTATTTTTATATCAAAATA+TGG + Chr2:2890432-2890451 None:intergenic 10.0%
!! AAAAAAAAAGAAAACACAAA+TGG + Chr2:2890479-2890498 None:intergenic 15.0%
!! AAAAAAAAGAAATAGATACA+AGG - Chr2:2892385-2892404 MsG0280006507.01.T01:intron 15.0%
!! AAATATACTTATATAAGTTC+GGG - Chr2:2891000-2891019 MsG0280006507.01.T01:intron 15.0%
!! AATAACTATGAACTAATTAA+TGG - Chr2:2891143-2891162 MsG0280006507.01.T01:intron 15.0%
!! ATAAATTAAAACCAAGAATA+TGG - Chr2:2891659-2891678 MsG0280006507.01.T01:intron 15.0%
!! ATATTAAGAAAAAAATGCAA+AGG - Chr2:2892013-2892032 MsG0280006507.01.T01:intron 15.0%
!! GATAATAAACAAAATTCATT+TGG + Chr2:2891714-2891733 None:intergenic 15.0%
!! GCAAATAAAACTTATAAATA+AGG + Chr2:2893739-2893758 None:intergenic 15.0%
!! TAATATTACAGTTGAATATT+GGG + Chr2:2894091-2894110 None:intergenic 15.0%
!! TTAATATTACAGTTGAATAT+TGG + Chr2:2894092-2894111 None:intergenic 15.0%
!!! TATGTTTAAGATTATTAGTA+TGG + Chr2:2893411-2893430 None:intergenic 15.0%
!!! TTCTTTAAAAATAATTTGTC+TGG - Chr2:2891860-2891879 MsG0280006507.01.T01:intron 15.0%
!! AAAAGACTATAATGATAAGA+AGG - Chr2:2891581-2891600 MsG0280006507.01.T01:intron 20.0%
!! ACATAATATACATGAACTTA+AGG - Chr2:2893426-2893445 MsG0280006507.01.T01:intron 20.0%
!! AGTATTACTTAATTATTACC+TGG + Chr2:2890872-2890891 None:intergenic 20.0%
!! ATGATATTTGAACAACTATT+TGG - Chr2:2892190-2892209 MsG0280006507.01.T01:intron 20.0%
!! CATAATATACATGAACTTAA+GGG - Chr2:2893427-2893446 MsG0280006507.01.T01:intron 20.0%
!! TAATATAGCTGATATAATGT+GGG - Chr2:2890391-2890410 MsG0280006507.01.T01:three_prime_UTR 20.0%
!! TATAAATAAGGACAAAGATA+AGG + Chr2:2893727-2893746 None:intergenic 20.0%
!! TCATTTCTCAAAGAAAAATA+TGG - Chr2:2892345-2892364 MsG0280006507.01.T01:intron 20.0%
!! TTAAGTGATTGTATTTGATT+AGG - Chr2:2893160-2893179 MsG0280006507.01.T01:intron 20.0%
!! TTATTGTGTTGTAGATAATT+GGG - Chr2:2892947-2892966 MsG0280006507.01.T01:intron 20.0%
!! TTTATTGTGTTGTAGATAAT+TGG - Chr2:2892946-2892965 MsG0280006507.01.T01:intron 20.0%
!!! AATTATATCTTTTCTCATGA+TGG - Chr2:2893132-2893151 MsG0280006507.01.T01:intron 20.0%
!!! ATGTGGTCTAATTTTATTAT+GGG - Chr2:2892563-2892582 MsG0280006507.01.T01:intron 20.0%
!!! ATTAACCTTCTTTTTTTTTG+AGG + Chr2:2891617-2891636 None:intergenic 20.0%
!!! TTTTCATTGATCAAAAACAA+TGG - Chr2:2892233-2892252 MsG0280006507.01.T01:intron 20.0%
! AAAATCTATACGTCTATAAG+TGG - Chr2:2893518-2893537 MsG0280006507.01.T01:intron 25.0%
! AAAATTGATATGTGACAAGA+AGG + Chr2:2891197-2891216 None:intergenic 25.0%
! AATAACTCCAACAAAACATA+TGG + Chr2:2892487-2892506 None:intergenic 25.0%
! AATCCTTCTAAACATACTTA+CGG + Chr2:2892079-2892098 None:intergenic 25.0%
! AGAAAGAGATTAATTATGAG+AGG + Chr2:2890505-2890524 None:intergenic 25.0%
! ATTACTTAATTATTACCTGG+TGG + Chr2:2890869-2890888 None:intergenic 25.0%
! GATTTCCTCAAAAAAAAAGA+AGG - Chr2:2891609-2891628 MsG0280006507.01.T01:intron 25.0%
! GTAATATAGCTGATATAATG+TGG - Chr2:2890390-2890409 MsG0280006507.01.T01:three_prime_UTR 25.0%
! TAAACAAGTAACGATATTAG+TGG + Chr2:2891486-2891505 None:intergenic 25.0%
! TAATTTATTGCAGACAAATG+AGG - Chr2:2890359-2890378 MsG0280006507.01.T01:three_prime_UTR 25.0%
! TAGATACAAGGATAATGAAT+TGG - Chr2:2892397-2892416 MsG0280006507.01.T01:intron 25.0%
! TCTCATTAATTGTGGTATTT+AGG - Chr2:2891827-2891846 MsG0280006507.01.T01:intron 25.0%
! TGTTTGACAAGAAAAATGAT+AGG - Chr2:2890931-2890950 MsG0280006507.01.T01:intron 25.0%
! TTAAATTACGGTTAGTGATA+CGG + Chr2:2893323-2893342 None:intergenic 25.0%
!! AGACAAAAGAGTATAATATG+TGG - Chr2:2893828-2893847 MsG0280006507.01.T01:CDS 25.0%
!! ATTGCTCATTTTCTTTTTAG+AGG + Chr2:2892172-2892191 None:intergenic 25.0%
!! CACATTCTAAAAAAGTTCAA+AGG + Chr2:2893475-2893494 None:intergenic 25.0%
!! CATGTGGTCTAATTTTATTA+TGG - Chr2:2892562-2892581 MsG0280006507.01.T01:intron 25.0%
!! GAATATTTGTTGAAAAGACA+TGG - Chr2:2890609-2890628 MsG0280006507.01.T01:intron 25.0%
!! GGAAAAAGCTAATATTTTCT+TGG + Chr2:2891465-2891484 None:intergenic 25.0%
!! TAATGGTGTGATTGAATTTT+AGG - Chr2:2891160-2891179 MsG0280006507.01.T01:exon 25.0%
!! TGTGGTCTAATTTTATTATG+GGG - Chr2:2892564-2892583 MsG0280006507.01.T01:intron 25.0%
!!! CTAGTTTTGACTAATACATA+TGG - Chr2:2892135-2892154 MsG0280006507.01.T01:intron 25.0%
!!! CTTTGAACTTTTTTAGAATG+TGG - Chr2:2893473-2893492 MsG0280006507.01.T01:intron 25.0%
!!! TAATGATTTTAATTCTCACC+CGG - Chr2:2891633-2891652 MsG0280006507.01.T01:intron 25.0%
!!! TTTTTTTCAAGTAGCCAAAT+GGG - Chr2:2892098-2892117 MsG0280006507.01.T01:intron 25.0%
!!! TTTTTTTTCAAGTAGCCAAA+TGG - Chr2:2892097-2892116 MsG0280006507.01.T01:intron 25.0%
AAAACAATGGAGAGAGAAAA+AGG - Chr2:2892246-2892265 MsG0280006507.01.T01:intron 30.0%
AAATATGGTCCCTATCAAAA+TGG + Chr2:2890417-2890436 None:intergenic 30.0%
AAATCAGAAGATTTGATCCA+TGG - Chr2:2893561-2893580 MsG0280006507.01.T01:intron 30.0%
AAGATGTCAATGTTGAATTC+AGG + Chr2:2893286-2893305 None:intergenic 30.0%
AATGAAAAGAGAGAAAAGGA+AGG + Chr2:2892221-2892240 None:intergenic 30.0%
AATTCTATCACGCCTTAATT+AGG - Chr2:2891307-2891326 MsG0280006507.01.T01:intron 30.0%
ATGTGCAATTGACCTAATTA+AGG + Chr2:2891322-2891341 None:intergenic 30.0%
GAAATGTTAGTGACATAACA+TGG - Chr2:2892847-2892866 MsG0280006507.01.T01:intron 30.0%
GAGTATAATATGTGGATGTT+TGG - Chr2:2893836-2893855 MsG0280006507.01.T01:CDS 30.0%
GATCAATGAAAAGAGAGAAA+AGG + Chr2:2892225-2892244 None:intergenic 30.0%
GATGATGTTCATTTCTATGA+TGG - Chr2:2890723-2890742 MsG0280006507.01.T01:intron 30.0%
GTTAAGTGACACATACTTAT+TGG - Chr2:2892883-2892902 MsG0280006507.01.T01:intron 30.0%
TAACCGTAAGTATGTTTAGA+AGG - Chr2:2892073-2892092 MsG0280006507.01.T01:intron 30.0%
TACGTACCTGGATTAAATTA+CGG + Chr2:2893335-2893354 None:intergenic 30.0%
TAGAAATAAATACCTCATCC+CGG + Chr2:2893095-2893114 None:intergenic 30.0%
TGGTTTCTTCACAAAAATGT+TGG - Chr2:2890641-2890660 MsG0280006507.01.T01:intron 30.0%
! ATCAGTACCATATGTTTTGT+TGG - Chr2:2892477-2892496 MsG0280006507.01.T01:intron 30.0%
! CAGCAGAATATTTTGTTACT+TGG + Chr2:2893972-2893991 None:intergenic 30.0%
! TATATTGCTCTTGTTTGAGT+TGG + Chr2:2893779-2893798 None:intergenic 30.0%
! TATTTGTTGAAAAGACATGG+AGG - Chr2:2890612-2890631 MsG0280006507.01.T01:intron 30.0%
!! AGGTATGCAATTTTAATGTG+TGG - Chr2:2890576-2890595 MsG0280006507.01.T01:three_prime_UTR 30.0%
!! ATATGGTACTGATTATTGAC+AGG + Chr2:2892470-2892489 None:intergenic 30.0%
!! TTGAAGAGTGAAAGTTTTGA+TGG + Chr2:2893066-2893085 None:intergenic 30.0%
!! TTTTCTGGTCAAATAGTTAG+TGG + Chr2:2892786-2892805 None:intergenic 30.0%
!!! CTTGGTTTTAATTTATGCTC+CGG + Chr2:2891655-2891674 None:intergenic 30.0%
!!! GAGTGTCTTACTTTTTTTTC+TGG + Chr2:2892801-2892820 None:intergenic 30.0%
!!! TTGGTTTTAATTTATGCTCC+GGG + Chr2:2891654-2891673 None:intergenic 30.0%
!!! TTTTTTCAAGTAGCCAAATG+GGG - Chr2:2892099-2892118 MsG0280006507.01.T01:intron 30.0%
AAAAGACATGGAGGTTGTTA+TGG - Chr2:2890621-2890640 MsG0280006507.01.T01:intron 35.0%
AAAATCCTTGGCATTTGCTT+TGG - Chr2:2890843-2890862 MsG0280006507.01.T01:intron 35.0%
AAACATGACACTTGATGAGA+CGG + Chr2:2891405-2891424 None:intergenic 35.0%
AAGAATAAGAGACACGAAGA+TGG - Chr2:2891061-2891080 MsG0280006507.01.T01:intron 35.0%
AAGAGATGTTAGAAAGAGTG+AGG - Chr2:2890547-2890566 MsG0280006507.01.T01:three_prime_UTR 35.0%
AAGGTCAATGTCCATATTCT+TGG + Chr2:2891673-2891692 None:intergenic 35.0%
AATTAGACCACATGTCGAAA+AGG + Chr2:2892556-2892575 None:intergenic 35.0%
AGAAGATTTGATCCATGGAA+TGG - Chr2:2893566-2893585 MsG0280006507.01.T01:intron 35.0%
AGACTGGAATTGAGATGTTT+AGG - Chr2:2893228-2893247 MsG0280006507.01.T01:intron 35.0%
AGATTCACACACATTATGTG+TGG + Chr2:2892761-2892780 None:intergenic 35.0%
AGCTATCAGGGAATTTATGT+AGG - Chr2:2892703-2892722 MsG0280006507.01.T01:intron 35.0%
ATACCACAATTAATGAGACG+AGG + Chr2:2891825-2891844 None:intergenic 35.0%
ATGATTTGATGCATGAGATG+AGG - Chr2:2891554-2891573 MsG0280006507.01.T01:intron 35.0%
CACTAACCGTAATTTAATCC+AGG - Chr2:2893326-2893345 MsG0280006507.01.T01:intron 35.0%
CTAAACATACTTACGGTTAG+AGG + Chr2:2892072-2892091 None:intergenic 35.0%
CTTTGTCTCACATTTCTGAA+AGG - Chr2:2893936-2893955 MsG0280006507.01.T01:intron 35.0%
GAAGATTTGATCCATGGAAT+GGG - Chr2:2893567-2893586 MsG0280006507.01.T01:intron 35.0%
GCTATCAGGGAATTTATGTA+GGG - Chr2:2892704-2892723 MsG0280006507.01.T01:intron 35.0%
GGAATTGAGATGTTTAGGTA+TGG - Chr2:2893233-2893252 MsG0280006507.01.T01:intron 35.0%
GTGTGTAAATAATACGTACC+TGG + Chr2:2893347-2893366 None:intergenic 35.0%
TAGGTATGGAAATCACATGT+GGG - Chr2:2893247-2893266 MsG0280006507.01.T01:intron 35.0%
TCCCTCAACAAAAAAATCCT+TGG - Chr2:2890831-2890850 MsG0280006507.01.T01:intron 35.0%
TGATTTGATGCATGAGATGA+GGG - Chr2:2891555-2891574 MsG0280006507.01.T01:intron 35.0%
TGTCAATGTTGAATTCAGGA+TGG + Chr2:2893282-2893301 None:intergenic 35.0%
TGTTAATGAAGAGTTTCCTG+AGG - Chr2:2890698-2890717 MsG0280006507.01.T01:intron 35.0%
TTAGGTATGGAAATCACATG+TGG - Chr2:2893246-2893265 MsG0280006507.01.T01:intron 35.0%
TTTATGAGTCATAGCTCAGT+TGG - Chr2:2892679-2892698 MsG0280006507.01.T01:intron 35.0%
! AAACATATTTTCCCCCCATT+TGG + Chr2:2892115-2892134 None:intergenic 35.0%
! ATATGTTCCTTTTCGACATG+TGG - Chr2:2892546-2892565 MsG0280006507.01.T01:intron 35.0%
!! ATAATGTGGGCCATTTTGAT+AGG - Chr2:2890404-2890423 MsG0280006507.01.T01:three_prime_UTR 35.0%
!! TAATGTGGGCCATTTTGATA+GGG - Chr2:2890405-2890424 MsG0280006507.01.T01:three_prime_UTR 35.0%
!! TGCAATTTTAATGTGTGGAG+AGG - Chr2:2890581-2890600 MsG0280006507.01.T01:three_prime_UTR 35.0%
!!! GCCAAGGATTTTTTTGTTGA+GGG + Chr2:2890835-2890854 None:intergenic 35.0%
!!! TATGATGGTTTTGTCATCAC+TGG - Chr2:2890738-2890757 MsG0280006507.01.T01:intron 35.0%
!!! TGCCAAGGATTTTTTTGTTG+AGG + Chr2:2890836-2890855 None:intergenic 35.0%
!!! TTTTTCAAGTAGCCAAATGG+GGG - Chr2:2892100-2892119 MsG0280006507.01.T01:intron 35.0%
AAATAAATACCTCATCCCGG+TGG + Chr2:2893092-2893111 None:intergenic 40.0%
AAATGAACATCATCGTCCTC+AGG + Chr2:2890717-2890736 None:intergenic 40.0%
AAGGCATACATCACAAAGCA+AGG + Chr2:2893708-2893727 None:intergenic 40.0%
ACACATTATGTGTGGAGAAG+TGG + Chr2:2892753-2892772 None:intergenic 40.0%
ACATTATGTGTGGAGAAGTG+GGG + Chr2:2892751-2892770 None:intergenic 40.0%
ACATTTGTGGTTCAGACAGA+CGG + Chr2:2892429-2892448 None:intergenic 40.0%
AGGCATACATCACAAAGCAA+GGG + Chr2:2893707-2893726 None:intergenic 40.0%
AGGGAATTTATGTAGGGATG+GGG - Chr2:2892710-2892729 MsG0280006507.01.T01:intron 40.0%
CACAATTAATGAGACGAGGA+GGG + Chr2:2891821-2891840 None:intergenic 40.0%
CACATTATGTGTGGAGAAGT+GGG + Chr2:2892752-2892771 None:intergenic 40.0%
CAGGGAATTTATGTAGGGAT+GGG - Chr2:2892709-2892728 MsG0280006507.01.T01:intron 40.0%
GATTTGATGCATGAGATGAG+GGG - Chr2:2891556-2891575 MsG0280006507.01.T01:intron 40.0%
GCAGACAAATGAGGATAGTA+TGG - Chr2:2890368-2890387 MsG0280006507.01.T01:three_prime_UTR 40.0%
TAAGACACTCTCATCATGCA+TGG - Chr2:2892811-2892830 MsG0280006507.01.T01:intron 40.0%
TACACACTAGTTCCATTCCA+TGG - Chr2:2890448-2890467 MsG0280006507.01.T01:three_prime_UTR 40.0%
TAGAAAGAGTGAGGAAGAAG+AGG - Chr2:2890556-2890575 MsG0280006507.01.T01:three_prime_UTR 40.0%
TAGATAATTGGGCGTGCATT+GGG - Chr2:2892958-2892977 MsG0280006507.01.T01:intron 40.0%
TCAATGTGTGAACAAGAGTG+AGG + Chr2:2890809-2890828 None:intergenic 40.0%
TCAGGGAATTTATGTAGGGA+TGG - Chr2:2892708-2892727 MsG0280006507.01.T01:intron 40.0%
TGCTTCGCATGTAAAGATGA+AGG - Chr2:2893875-2893894 MsG0280006507.01.T01:CDS 40.0%
TGGGGACATATGTCAGAAAA+TGG - Chr2:2892582-2892601 MsG0280006507.01.T01:intron 40.0%
TTGATGAATCCAAGGGTCAT+TGG + Chr2:2890784-2890803 None:intergenic 40.0%
TTTCACTCTTCAAATGCCAC+CGG - Chr2:2893073-2893092 MsG0280006507.01.T01:intron 40.0%
! ACAAAAATGTTGGCTGAGGA+AGG - Chr2:2890651-2890670 MsG0280006507.01.T01:intron 40.0%
! AGCATATCTGAATGATGACG+AGG + Chr2:2893375-2893394 None:intergenic 40.0%
! ATGTGGATGTTTGGAATTGC+AGG - Chr2:2893845-2893864 MsG0280006507.01.T01:CDS 40.0%
! ATTGGTTGGTCAGAAAAGAC+TGG - Chr2:2893212-2893231 MsG0280006507.01.T01:intron 40.0%
! CTTCACAAAAATGTTGGCTG+AGG - Chr2:2890647-2890666 MsG0280006507.01.T01:intron 40.0%
!! TGAGGAGTTGATGAATCCAA+GGG + Chr2:2890791-2890810 None:intergenic 40.0%
!!! TTTTCAAGTAGCCAAATGGG+GGG - Chr2:2892101-2892120 MsG0280006507.01.T01:intron 40.0%
AAACACAAATGGCGTGACCA+TGG + Chr2:2890468-2890487 None:intergenic 45.0%
AAATCACATGTGGGCATCCA+AGG - Chr2:2893256-2893275 MsG0280006507.01.T01:intron 45.0%
AAGGTGACACATGAGAAAGC+AGG - Chr2:2892032-2892051 MsG0280006507.01.T01:intron 45.0%
AGGTGACACATGAGAAAGCA+GGG - Chr2:2892033-2892052 MsG0280006507.01.T01:intron 45.0%
ATGACACTTGATGAGACGGA+GGG + Chr2:2891401-2891420 None:intergenic 45.0%
ATTACGAGATCCAGACACAG+AGG - Chr2:2893902-2893921 MsG0280006507.01.T01:CDS 45.0%
CAGATTCTGATCCCATTCCA+TGG + Chr2:2893581-2893600 None:intergenic 45.0%
CATCACAAAGCAAGGGGATA+AGG + Chr2:2893700-2893719 None:intergenic 45.0%
CATGGAATGGGATCAGAATC+TGG - Chr2:2893579-2893598 MsG0280006507.01.T01:intron 45.0%
CCACAATTAATGAGACGAGG+AGG + Chr2:2891822-2891841 None:intergenic 45.0%
CCTCCTCGTCTCATTAATTG+TGG - Chr2:2891819-2891838 MsG0280006507.01.T01:intron 45.0%
CTGAAGCAGAGGTAATTGGT+TGG - Chr2:2893198-2893217 MsG0280006507.01.T01:intron 45.0%
GGCATACATCACAAAGCAAG+GGG + Chr2:2893706-2893725 None:intergenic 45.0%
GTAGATAATTGGGCGTGCAT+TGG - Chr2:2892957-2892976 MsG0280006507.01.T01:intron 45.0%
TGTTGAATTCAGGATGGCCT+TGG + Chr2:2893276-2893295 None:intergenic 45.0%
TTCACTCTTCAAATGCCACC+GGG - Chr2:2893074-2893093 MsG0280006507.01.T01:intron 45.0%
!! AGCTCAGTTGGTAGCTATCA+GGG - Chr2:2892691-2892710 MsG0280006507.01.T01:intron 45.0%
!! GTGAGGAGTTGATGAATCCA+AGG + Chr2:2890792-2890811 None:intergenic 45.0%
!! TAGCTCAGTTGGTAGCTATC+AGG - Chr2:2892690-2892709 MsG0280006507.01.T01:intron 45.0%
!!! GTAAAAATATTATTTTTATA+AGG + Chr2:2891692-2891711 None:intergenic 5.0%
!!! TAAAGTTAAATTTTAAATTA+AGG - Chr2:2891955-2891974 MsG0280006507.01.T01:intron 5.0%
AGATTTGCCTGCTGAAGCAG+AGG - Chr2:2893187-2893206 MsG0280006507.01.T01:intron 50.0%
ATAATTGGGCGTGCATTGGG+AGG - Chr2:2892961-2892980 MsG0280006507.01.T01:intron 50.0%
ATGCACATGCCAATGACCCT+TGG - Chr2:2890772-2890791 MsG0280006507.01.T01:intron 50.0%
CAAATGGCGTGACCATGGAA+TGG + Chr2:2890463-2890482 None:intergenic 50.0%
CATGACACTTGATGAGACGG+AGG + Chr2:2891402-2891421 None:intergenic 50.0%
CCAATTACCTCTGCTTCAGC+AGG + Chr2:2893197-2893216 None:intergenic 50.0%
CCTGCTGAAGCAGAGGTAAT+TGG - Chr2:2893194-2893213 MsG0280006507.01.T01:intron 50.0%
GGCTGAGGAAGGAGAAACAT+GGG - Chr2:2890662-2890681 MsG0280006507.01.T01:intron 50.0%
GTGACTCATTGTACTGCACG+TGG + Chr2:2893627-2893646 None:intergenic 50.0%
TAATTGGGCGTGCATTGGGA+GGG - Chr2:2892962-2892981 MsG0280006507.01.T01:intron 50.0%
TAGGGATGGGGTTCGAACAT+CGG - Chr2:2892722-2892741 MsG0280006507.01.T01:intron 50.0%
TGGCTGAGGAAGGAGAAACA+TGG - Chr2:2890661-2890680 MsG0280006507.01.T01:intron 50.0%
! GTTTTCCATGCCTCTGTGTC+TGG + Chr2:2893915-2893934 None:intergenic 50.0%
AAAGTGGTGCGTTCTGGTGC+AGG - Chr2:2892985-2893004 MsG0280006507.01.T01:intron 55.0%
CTTCAAATGCCACCGGGATG+AGG - Chr2:2893080-2893099 MsG0280006507.01.T01:intron 55.0%
GAGATCCAGACACAGAGGCA+TGG - Chr2:2893907-2893926 MsG0280006507.01.T01:CDS 55.0%
GGTGGCCAAAGCAAATGCCA+AGG + Chr2:2890851-2890870 None:intergenic 55.0%
TGGCATTTGCTTTGGCCACC+AGG - Chr2:2890851-2890870 MsG0280006507.01.T01:intron 55.0%
! TCTGGTGCAGGTTGGGACAT+AGG - Chr2:2892997-2893016 MsG0280006507.01.T01:intron 55.0%
GCGTGCATTGGGAGGGAAAG+TGG - Chr2:2892969-2892988 MsG0280006507.01.T01:intron 60.0%
GGAGGGAAAGTGGTGCGTTC+TGG - Chr2:2892979-2892998 MsG0280006507.01.T01:intron 60.0%
GGTGCGTTCTGGTGCAGGTT+GGG - Chr2:2892990-2893009 MsG0280006507.01.T01:intron 60.0%
TGGTGCGTTCTGGTGCAGGT+TGG - Chr2:2892989-2893008 MsG0280006507.01.T01:intron 60.0%
Chromosome Type Strat End Strand Name
Chr2 gene 2890315 2894177 2890315 ID=MsG0280006507.01;Name=MsG0280006507.01
Chr2 mRNA 2890315 2894177 2890315 ID=MsG0280006507.01.T01;Parent=MsG0280006507.01;Name=MsG0280006507.01.T01;_AED=0.49;_eAED=0.49;_QI=237|1|1|1|0.66|0.5|4|327|203
Chr2 exon 2890315 2890625 2890315 ID=MsG0280006507.01.T01:exon:1589;Parent=MsG0280006507.01.T01
Chr2 exon 2891145 2891310 2891145 ID=MsG0280006507.01.T01:exon:1588;Parent=MsG0280006507.01.T01
Chr2 five_prime_UTR 2893941 2894177 2893941 ID=MsG0280006507.01.T01:five_prime_utr;Parent=MsG0280006507.01.T01
Chr2 CDS 2893620 2893940 2893620 ID=MsG0280006507.01.T01:cds;Parent=MsG0280006507.01.T01
Chr2 CDS 2891391 2891531 2891391 ID=MsG0280006507.01.T01:cds;Parent=MsG0280006507.01.T01
Chr2 CDS 2891161 2891310 2891161 ID=MsG0280006507.01.T01:cds;Parent=MsG0280006507.01.T01
Chr2 three_prime_UTR 2891145 2891160 2891145 ID=MsG0280006507.01.T01:three_prime_utr;Parent=MsG0280006507.01.T01
Chr2 three_prime_UTR 2890315 2890625 2890315 ID=MsG0280006507.01.T01:three_prime_utr;Parent=MsG0280006507.01.T01
Chr2 mRNA 2890365 2894177 2890365 ID=MsG0280006507.01.T02;Parent=MsG0280006507.01;Name=MsG0280006507.01.T02;_AED=0.49;_eAED=0.49;_QI=237|1|1|1|1|1|3|796|203
Chr2 exon 2890365 2891310 2890365 ID=MsG0280006507.01.T02:exon:1590;Parent=MsG0280006507.01.T02
Chr2 five_prime_UTR 2893941 2894177 2893941 ID=MsG0280006507.01.T02:five_prime_utr;Parent=MsG0280006507.01.T02
Chr2 CDS 2893620 2893940 2893620 ID=MsG0280006507.01.T02:cds;Parent=MsG0280006507.01.T02
Chr2 CDS 2891391 2891531 2891391 ID=MsG0280006507.01.T02:cds;Parent=MsG0280006507.01.T02
Chr2 CDS 2891161 2891310 2891161 ID=MsG0280006507.01.T02:cds;Parent=MsG0280006507.01.T02
Chr2 three_prime_UTR 2890365 2891160 2890365 ID=MsG0280006507.01.T02:three_prime_utr;Parent=MsG0280006507.01.T02
Gene Sequence

>MsG0280006507.01.T02

ATGTTAGAAAGAGTGAGGAAGAAGAGGTATGCAATTTTAATGTGTGGAGAGGATTCAGAATATTTGTTGAAAAGACATGGAGGTTGTTATGGTTTCTTCACAAAAATGTTGGCTGAGGAAGGAGAAACATGGGATCTTTACAAAGTTGTTAATGAAGAGTTTCCTGAGGACGATGATGTTCATTTCTATGATGGTTTTGTCATCACTGGAAGCTGCAAAGATGCACATGCCAATGACCCTTGGATTCATCAACTCCTCACTCTTGTTCACACATTGAATTCCCTCAACAAAAAAATCCTTGGCATTTGCTTTGGCCACCAGATAATTGGGCGTGCATTGGGAGGGAAAGTGGTGCGTTCTGGTGCAGGTTGGGACATAGGTGTCTCAACTATCAATTTGTTACAATCATCATCTCTCAATTTACCATCAAAACTTTCACTCTTCAAATGCCACCGGGATGAGGTTATAGATTTGCCTGCTGAAGCAGAGGTAATTGGTTGGTCAGAAAAGACTGGAATTGAGATGTTTAGGTATGGAAATCACATGTGGGCATCCAAGGCCATCCTGAATTCAACATTGACATCTTTTTCACTTTATAGACCGTATCACTAA

>MsG0280006507.01.T01

ATGTTAGAAAGAGTGAGGAAGAAGAGGTATGCAATTTTAATGTGTGGAGAGGATTCAGAATATTTGTTGAAAAGACATGGAGGTTGTTATGGTTTCTTCACAAAAATGTTGGCTGAGGAAGGAGAAACATGGGATCTTTACAAAGTTGTTAATGAAGAGTTTCCTGAGGACGATGATGTTCATTTCTATGATGGTTTTGTCATCACTGGAAGCTGCAAAGATGCACATGCCAATGACCCTTGGATTCATCAACTCCTCACTCTTGTTCACACATTGAATTCCCTCAACAAAAAAATCCTTGGCATTTGCTTTGGCCACCAGATAATTGGGCGTGCATTGGGAGGGAAAGTGGTGCGTTCTGGTGCAGGTTGGGACATAGGTGTCTCAACTATCAATTTGTTACAATCATCATCTCTCAATTTACCATCAAAACTTTCACTCTTCAAATGCCACCGGGATGAGGTTATAGATTTGCCTGCTGAAGCAGAGGTAATTGGTTGGTCAGAAAAGACTGGAATTGAGATGTTTAGGTATGGAAATCACATGTGGGCATCCAAGGCCATCCTGAATTCAACATTGACATCTTTTTCACTTTATAGACCGTATCACTAA
Protein sequence

>MsG0280006507.01.T02

MLERVRKKRYAILMCGEDSEYLLKRHGGCYGFFTKMLAEEGETWDLYKVVNEEFPEDDDVHFYDGFVITGSCKDAHANDPWIHQLLTLVHTLNSLNKKILGICFGHQIIGRALGGKVVRSGAGWDIGVSTINLLQSSSLNLPSKLSLFKCHRDEVIDLPAEAEVIGWSEKTGIEMFRYGNHMWASKAILNSTLTSFSLYRPYH*

>MsG0280006507.01.T01

MLERVRKKRYAILMCGEDSEYLLKRHGGCYGFFTKMLAEEGETWDLYKVVNEEFPEDDDVHFYDGFVITGSCKDAHANDPWIHQLLTLVHTLNSLNKKILGICFGHQIIGRALGGKVVRSGAGWDIGVSTINLLQSSSLNLPSKLSLFKCHRDEVIDLPAEAEVIGWSEKTGIEMFRYGNHMWASKAILNSTLTSFSLYRPYH*