AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0280006644.01

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0280006644.01.T01 MTR_2g009720 86.508 252 25 3 1 250 1 245 1.61e-150 419
MsG0280006644.01.T01 MTR_2g009720 87.671 219 18 3 1 217 1 212 4.00e-126 358
MsG0280006644.01.T01 MTR_5g083210 55.378 251 98 3 2 247 1 242 4.00e-96 281
MsG0280006644.01.T01 MTR_4g093250 55.061 247 99 3 8 249 9 248 1.63e-88 263
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0280006644.01.T01 AT2G23970 40.000 250 136 3 7 249 5 247 2.51e-67 209
MsG0280006644.01.T01 AT4G30550 37.450 251 142 3 6 248 6 249 9.21e-60 189
MsG0280006644.01.T01 AT4G30530 34.783 253 151 2 5 250 2 247 2.46e-55 178
MsG0280006644.01.T01 AT4G30540 37.008 254 146 4 1 249 1 245 3.00e-55 178
MsG0280006644.01.T01 AT2G23960 35.317 252 149 3 5 249 2 246 4.17e-54 175
MsG0280006644.01.T01 AT2G23960 36.620 213 121 3 5 210 2 207 3.29e-47 156

Find 70 sgRNAs with CRISPR-Local

Find 198 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTTATTGTGTTGTAGATAAT+TGG 0.121581 2:+4435198 MsG0280006644.01.T01:intron
TTAATATTACAGTTGAATAT+TGG 0.245600 2:-4436345 None:intergenic
TAATATTACAGTTGAATATT+GGG 0.282965 2:-4436344 None:intergenic
CCTGCTGAAGCAGAGGTAAT+TGG 0.304947 2:+4435447 MsG0280006644.01.T01:CDS
AGACTGGAATTGAGATGTTT+AGG 0.334640 2:+4435481 MsG0280006644.01.T01:CDS
AAAAGACATGGAGGTTGTTA+TGG 0.340928 2:+4432868 MsG0280006644.01.T01:CDS
AAGATGTCAATGTTGAATTC+AGG 0.358354 2:-4435537 None:intergenic
AAAATCCTTGGCATTTGCTT+TGG 0.371037 2:+4433088 MsG0280006644.01.T01:CDS
TGCAGACAATGAGGATAGTA+TGG 0.374055 2:+4432616 MsG0280006644.01.T01:five_prime_UTR
GGATAATTTATGTAGGGATT+GGG 0.375521 2:+4434958 MsG0280006644.01.T01:CDS
TTATTGTGTTGTAGATAATT+GGG 0.392824 2:+4435199 MsG0280006644.01.T01:intron
GGAGGGAAAGTGGTGCGTTC+TGG 0.393122 2:+4435231 MsG0280006644.01.T01:CDS
TAGATAATTGGGCGTGCATT+GGG 0.419343 2:+4435210 MsG0280006644.01.T01:intron
GGGATAATTTATGTAGGGAT+TGG 0.420494 2:+4434957 MsG0280006644.01.T01:intron
TGGCATTTGCTTTGGCCACC+AGG 0.426626 2:+4433096 MsG0280006644.01.T01:CDS
GATGATGTTCATTTCTATGA+TGG 0.435255 2:+4432970 MsG0280006644.01.T01:CDS
GGTGCGTTCTGGTGCAGGTT+GGG 0.436830 2:+4435242 MsG0280006644.01.T01:CDS
TACGTACCTGGATTAAATTA+CGG 0.443578 2:-4435587 None:intergenic
AGGTATGGAAATCACATGTT+GGG 0.455673 2:+4435501 MsG0280006644.01.T01:CDS
TTAAATTACGGTTAGTGATA+CGG 0.464304 2:-4435575 None:intergenic
TTGATGAATCCAAGGGTCAT+TGG 0.467310 2:-4433028 None:intergenic
TGTTGAATTCAGGATGGCCT+TGG 0.468204 2:-4435527 None:intergenic
TCTGGTGCAGGTTGGGACAT+AGG 0.478858 2:+4435249 MsG0280006644.01.T01:CDS
GGAATTGAGATGTTTAGGTA+TGG 0.499218 2:+4435486 MsG0280006644.01.T01:CDS
AAAGTGGTGCGTTCTGGTGC+AGG 0.500469 2:+4435237 MsG0280006644.01.T01:CDS
GATAATTTATGTAGGGATTG+GGG 0.501784 2:+4434959 MsG0280006644.01.T01:CDS
CCAATTACCTCTGCTTCAGC+AGG 0.508145 2:-4435447 None:intergenic
CTTTGTCTCACATTTCTGAA+AGG 0.513703 2:+4436192 MsG0280006644.01.T01:CDS
ATGCACATGCCAATGACCCT+TGG 0.523318 2:+4433019 MsG0280006644.01.T01:CDS
TAGAAAGAGTGAGGAAGAAG+AGG 0.525905 2:+4432803 MsG0280006644.01.T01:CDS
CTATCAGGGATAATTTATGT+AGG 0.527984 2:+4434951 MsG0280006644.01.T01:intron
GCGTGCATTGGGAGGGAAAG+TGG 0.528941 2:+4435221 MsG0280006644.01.T01:CDS
TAGGTATGGAAATCACATGT+TGG 0.530712 2:+4435500 MsG0280006644.01.T01:CDS
TTTCACTCTTCAAATGCCAC+CGG 0.531268 2:+4435325 MsG0280006644.01.T01:CDS
CTTCAAATGCCACCGGGATG+AGG 0.532803 2:+4435332 MsG0280006644.01.T01:CDS
TGCTTCGCATGTAAAGATGA+AGG 0.533024 2:+4436131 MsG0280006644.01.T01:CDS
AATCACATGTTGGGCATCCA+AGG 0.533204 2:+4435510 MsG0280006644.01.T01:CDS
TATCAGGGATAATTTATGTA+GGG 0.533608 2:+4434952 MsG0280006644.01.T01:intron
ATTGGTTGGTCAGAAAAGAC+TGG 0.534534 2:+4435465 MsG0280006644.01.T01:CDS
AAGAGATGTTAGAAAGAGTG+AGG 0.535943 2:+4432794 MsG0280006644.01.T01:exon
GAATATTTGTTGAAAAGACA+TGG 0.539899 2:+4432856 MsG0280006644.01.T01:CDS
AAATGAACATCATCGTCCTC+AGG 0.539952 2:-4432961 None:intergenic
CAAATGGCGTGACCATGGAA+TGG 0.541257 2:-4432707 None:intergenic
GTAGATAATTGGGCGTGCAT+TGG 0.541921 2:+4435209 MsG0280006644.01.T01:intron
AGAAAGAGATTAATTATGAG+AGG 0.542495 2:-4432749 None:intergenic
CACTAACCGTAATTTAATCC+AGG 0.545302 2:+4435581 MsG0280006644.01.T01:CDS
GTGAGGAGTTGATGAATCCA+AGG 0.557820 2:-4433036 None:intergenic
TTCACTCTTCAAATGCCACC+GGG 0.561202 2:+4435326 MsG0280006644.01.T01:CDS
GTAATATAGCTGATATAATG+TGG 0.568218 2:+4432638 MsG0280006644.01.T01:five_prime_UTR
ATAATTGGGCGTGCATTGGG+AGG 0.577537 2:+4435213 MsG0280006644.01.T01:CDS
AAACACAAATGGCGTGACCA+TGG 0.579261 2:-4432712 None:intergenic
TTAATTTATTGCAGACAATG+AGG 0.582038 2:+4432607 MsG0280006644.01.T01:five_prime_UTR
TGGTGCGTTCTGGTGCAGGT+TGG 0.584609 2:+4435241 MsG0280006644.01.T01:CDS
GGCTGAGGAAGGAGAAACAT+GGG 0.587236 2:+4432909 MsG0280006644.01.T01:CDS
TACACACTAGTTCCATTCCA+TGG 0.590091 2:+4432695 MsG0280006644.01.T01:five_prime_UTR
TAATTGGGCGTGCATTGGGA+GGG 0.594620 2:+4435214 MsG0280006644.01.T01:CDS
TAGAAATAAATACCTCATCC+CGG 0.596369 2:-4435344 None:intergenic
AGATTTGCCTGCTGAAGCAG+AGG 0.607007 2:+4435440 MsG0280006644.01.T01:CDS
GAGATCCAGACACAGAGGCA+TGG 0.621789 2:+4436163 MsG0280006644.01.T01:CDS
TAATATAGCTGATATAATGT+GGG 0.630128 2:+4432639 MsG0280006644.01.T01:five_prime_UTR
CTGAAGCAGAGGTAATTGGT+TGG 0.642332 2:+4435451 MsG0280006644.01.T01:CDS
TGGCTGAGGAAGGAGAAACA+TGG 0.647270 2:+4432908 MsG0280006644.01.T01:CDS
TGTTAATGAAGAGTTTCCTG+AGG 0.653611 2:+4432945 MsG0280006644.01.T01:CDS
GGTGGCCAAAGCAAATGCCA+AGG 0.653984 2:-4433093 None:intergenic
TCAATGTGTGAACAAGAGTG+AGG 0.661343 2:-4433053 None:intergenic
TGAGGAGTTGATGAATCCAA+GGG 0.672228 2:-4433035 None:intergenic
TGTCAATGTTGAATTCAGGA+TGG 0.677095 2:-4435533 None:intergenic
TATTTGTTGAAAAGACATGG+AGG 0.690658 2:+4432859 MsG0280006644.01.T01:CDS
AAATAAATACCTCATCCCGG+TGG 0.739123 2:-4435341 None:intergenic
ATTACGAGATCCAGACACAG+AGG 0.767805 2:+4436158 MsG0280006644.01.T01:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AAAATATATTATTTTTATAA+AGG - Chr2:4433934-4433953 None:intergenic 0.0%
!! AAAATATACTTATATAAGTT+CGG + Chr2:4433243-4433262 MsG0280006644.01.T01:intron 10.0%
!! ATAATAAAACAAAATTCATT+TGG - Chr2:4433959-4433978 None:intergenic 10.0%
!!! AAAATAATTTTAAACATTTG+TGG - Chr2:4434687-4434706 None:intergenic 10.0%
!!! AATGTTTAAAATTATTTTTG+CGG + Chr2:4434689-4434708 MsG0280006644.01.T01:intron 10.0%
!!! ATATAATATATGATAATGAT+TGG + Chr2:4433492-4433511 MsG0280006644.01.T01:intron 10.0%
!!! TTATTAATAAAGTACTATTT+AGG - Chr2:4433765-4433784 None:intergenic 10.0%
!! AAAAAAAAAGAAAACACAAA+TGG - Chr2:4432726-4432745 None:intergenic 15.0%
!! AAAAAAAAGAAATAGATACA+AGG + Chr2:4434630-4434649 MsG0280006644.01.T01:intron 15.0%
!! AAATATACTTATATAAGTTC+GGG + Chr2:4433244-4433263 MsG0280006644.01.T01:intron 15.0%
!! AATAACTATGAACTAATTAA+TGG + Chr2:4433385-4433404 MsG0280006644.01.T01:intron 15.0%
!! ATAAATTAAAACCAAGAATA+TGG + Chr2:4433901-4433920 MsG0280006644.01.T01:intron 15.0%
!! ATATTAAGAAAAAAATGCAA+AGG + Chr2:4434258-4434277 MsG0280006644.01.T01:intron 15.0%
!! GCAAATAAAACTTATAAATA+AGG - Chr2:4435997-4436016 None:intergenic 15.0%
!! TAATATTACAGTTGAATATT+GGG - Chr2:4436347-4436366 None:intergenic 15.0%
!! TTAATATTACAGTTGAATAT+TGG - Chr2:4436348-4436367 None:intergenic 15.0%
!!! GTGTATTTTTATATCAAAAA+TGG - Chr2:4432680-4432699 None:intergenic 15.0%
!!! TATGTTTAAGATTATTAGTA+TGG - Chr2:4435666-4435685 None:intergenic 15.0%
!! AAAAGACTATAATGATAAGA+AGG + Chr2:4433822-4433841 MsG0280006644.01.T01:intron 20.0%
!! ACATAATATACATGAACTTA+AGG + Chr2:4435681-4435700 MsG0280006644.01.T01:intron 20.0%
!! AGTATTACTTAATTATTACC+TGG - Chr2:4433117-4433136 None:intergenic 20.0%
!! ATGATATTTGAACAACTATT+TGG + Chr2:4434434-4434453 MsG0280006644.01.T01:intron 20.0%
!! ATTTCCTCAAAAAAAAAAGA+AGG + Chr2:4433851-4433870 MsG0280006644.01.T01:intron 20.0%
!! CATAATATACATGAACTTAA+GGG + Chr2:4435682-4435701 MsG0280006644.01.T01:intron 20.0%
!! TAATATAGCTGATATAATGT+GGG + Chr2:4432639-4432658 MsG0280006644.01.T01:five_prime_UTR 20.0%
!! TCATTTCTCAAAGAAAAATA+TGG + Chr2:4434590-4434609 MsG0280006644.01.T01:intron 20.0%
!! TTAAGTGATTGTATTTGATT+AGG + Chr2:4435413-4435432 MsG0280006644.01.T01:intron 20.0%
!! TTATTGTGTTGTAGATAATT+GGG + Chr2:4435199-4435218 MsG0280006644.01.T01:intron 20.0%
!! TTTATTGTGTTGTAGATAAT+TGG + Chr2:4435198-4435217 MsG0280006644.01.T01:intron 20.0%
!!! ACATTCTAAAAAAAGTTCAA+AGG - Chr2:4435730-4435749 None:intergenic 20.0%
!!! ATGTGGTCTAATTTTATTAT+GGG + Chr2:4434809-4434828 MsG0280006644.01.T01:intron 20.0%
!!! ATTATATCTTTTTCTCATGA+TGG + Chr2:4435385-4435404 MsG0280006644.01.T01:intron 20.0%
!!! GTTCTTTAAAATAATTTGTC+TGG + Chr2:4434104-4434123 MsG0280006644.01.T01:intron 20.0%
!!! TTAACCTTCTTTTTTTTTTG+AGG - Chr2:4433858-4433877 None:intergenic 20.0%
!!! TTGAACTTTTTTTAGAATGT+TGG + Chr2:4435730-4435749 MsG0280006644.01.T01:intron 20.0%
!!! TTTTCATTGATCAAAAACAA+TGG + Chr2:4434477-4434496 MsG0280006644.01.T01:intron 20.0%
! AAAATCTATACGTCTATAAG+TGG + Chr2:4435776-4435795 MsG0280006644.01.T01:intron 25.0%
! AAAATTGATATGTGACAAGA+AGG - Chr2:4433439-4433458 None:intergenic 25.0%
! AATAACTCCAACAAAACATA+TGG - Chr2:4434733-4434752 None:intergenic 25.0%
! AATCCTTCTAAACATACTTA+CGG - Chr2:4434324-4434343 None:intergenic 25.0%
! AGAAAGAGATTAATTATGAG+AGG - Chr2:4432752-4432771 None:intergenic 25.0%
! ATTACTTAATTATTACCTGG+TGG - Chr2:4433114-4433133 None:intergenic 25.0%
! CTTATAAATAAGGACAAAGA+AGG - Chr2:4435987-4436006 None:intergenic 25.0%
! GTAATATAGCTGATATAATG+TGG + Chr2:4432638-4432657 MsG0280006644.01.T01:five_prime_UTR 25.0%
! TAAACAAGTAACGATATTAG+TGG - Chr2:4433728-4433747 None:intergenic 25.0%
! TAGATACAAGGATAATGAAT+TGG + Chr2:4434642-4434661 MsG0280006644.01.T01:intron 25.0%
! TATCAGGGATAATTTATGTA+GGG + Chr2:4434952-4434971 MsG0280006644.01.T01:intron 25.0%
! TCTCATTAATTGTGGTATTT+AGG + Chr2:4434072-4434091 MsG0280006644.01.T01:intron 25.0%
! TGTTTGACAAGAAAAATGAT+AGG + Chr2:4433175-4433194 MsG0280006644.01.T01:intron 25.0%
! TTAAATTACGGTTAGTGATA+CGG - Chr2:4435578-4435597 None:intergenic 25.0%
! TTAATTTATTGCAGACAATG+AGG + Chr2:4432607-4432626 MsG0280006644.01.T01:five_prime_UTR 25.0%
!! ATTGCTCATTTTCTTTTTAG+AGG - Chr2:4434416-4434435 None:intergenic 25.0%
!! CATGTGGTCTAATTTTATTA+TGG + Chr2:4434808-4434827 MsG0280006644.01.T01:intron 25.0%
!! GAATATTTGTTGAAAAGACA+TGG + Chr2:4432856-4432875 MsG0280006644.01.T01:CDS 25.0%
!! GGAAAAAGCTAATATTTTCT+TGG - Chr2:4433707-4433726 None:intergenic 25.0%
!! GTCACTTAACAAACATATTT+TGG - Chr2:4435124-4435143 None:intergenic 25.0%
!! TAATGGTGTGATTGAATTTT+AGG + Chr2:4433402-4433421 MsG0280006644.01.T01:intron 25.0%
!! TGTGGTCTAATTTTATTATG+GGG + Chr2:4434810-4434829 MsG0280006644.01.T01:intron 25.0%
!!! AGACAAAAGAGTATTATATG+TGG + Chr2:4436084-4436103 MsG0280006644.01.T01:intron 25.0%
!!! CTAGTTTTGACTAATACATA+TGG + Chr2:4434379-4434398 MsG0280006644.01.T01:intron 25.0%
!!! TAATGATTTTAATTCTCACC+CGG + Chr2:4433875-4433894 MsG0280006644.01.T01:intron 25.0%
!!! TTTTTTTCAAGTAGCCAAAT+GGG + Chr2:4434343-4434362 MsG0280006644.01.T01:intron 25.0%
!!! TTTTTTTTCAAGTAGCCAAA+TGG + Chr2:4434342-4434361 MsG0280006644.01.T01:intron 25.0%
AAAAATGGTCCCTATCAAAA+TGG - Chr2:4432665-4432684 None:intergenic 30.0%
AAAACAATGGAGAGAGAAAA+AGG + Chr2:4434490-4434509 MsG0280006644.01.T01:intron 30.0%
AAATCAGAAGATTTGATCCA+TGG + Chr2:4435818-4435837 MsG0280006644.01.T01:intron 30.0%
AAGATGTCAATGTTGAATTC+AGG - Chr2:4435540-4435559 None:intergenic 30.0%
AATGAAAAGAGAGAAAAGGA+AGG - Chr2:4434465-4434484 None:intergenic 30.0%
AATTCTATCACGCCTTAATT+AGG + Chr2:4433549-4433568 MsG0280006644.01.T01:intron 30.0%
ATGTGCAATTGACCTAATTA+AGG - Chr2:4433564-4433583 None:intergenic 30.0%
CTATCAGGGATAATTTATGT+AGG + Chr2:4434951-4434970 MsG0280006644.01.T01:intron 30.0%
GAAATGTTAGTGACATAACA+TGG + Chr2:4435097-4435116 MsG0280006644.01.T01:intron 30.0%
GAGTATTATATGTGGATGTT+TGG + Chr2:4436092-4436111 MsG0280006644.01.T01:intron 30.0%
GATAATTTATGTAGGGATTG+GGG + Chr2:4434959-4434978 MsG0280006644.01.T01:CDS 30.0%
GATCAATGAAAAGAGAGAAA+AGG - Chr2:4434469-4434488 None:intergenic 30.0%
GATGATGTTCATTTCTATGA+TGG + Chr2:4432970-4432989 MsG0280006644.01.T01:CDS 30.0%
GGATAATTTATGTAGGGATT+GGG + Chr2:4434958-4434977 MsG0280006644.01.T01:CDS 30.0%
GTTAAGTGACACATACTTAT+TGG + Chr2:4435134-4435153 MsG0280006644.01.T01:intron 30.0%
TAACCGTAAGTATGTTTAGA+AGG + Chr2:4434318-4434337 MsG0280006644.01.T01:intron 30.0%
TACGTACCTGGATTAAATTA+CGG - Chr2:4435590-4435609 None:intergenic 30.0%
TAGAAATAAATACCTCATCC+CGG - Chr2:4435347-4435366 None:intergenic 30.0%
TGGTTTCTTCACAAAAATGT+TGG + Chr2:4432888-4432907 MsG0280006644.01.T01:CDS 30.0%
! ATCAGTACCATATGTTTTGT+TGG + Chr2:4434723-4434742 MsG0280006644.01.T01:intron 30.0%
! CAGCAGAATATTTTGTTACT+TGG - Chr2:4436228-4436247 None:intergenic 30.0%
! TATATTGCTCTTGTTTGAGT+TGG - Chr2:4436036-4436055 None:intergenic 30.0%
! TATTTGTTGAAAAGACATGG+AGG + Chr2:4432859-4432878 MsG0280006644.01.T01:CDS 30.0%
! TTTCTGGTCAAATAGTTTAG+TGG - Chr2:4435035-4435054 None:intergenic 30.0%
!! AGGTATGCAATTTTAATGTG+TGG + Chr2:4432823-4432842 MsG0280006644.01.T01:CDS 30.0%
!! ATATGGTACTGATTATTGAC+AGG - Chr2:4434716-4434735 None:intergenic 30.0%
!! TTGAAGAGTGAAAGTTTTGA+TGG - Chr2:4435318-4435337 None:intergenic 30.0%
!!! CTTGGTTTTAATTTATGCTC+CGG - Chr2:4433897-4433916 None:intergenic 30.0%
!!! GAGTGTCTTACTTTTTTTTC+TGG - Chr2:4435051-4435070 None:intergenic 30.0%
!!! TTGGTTTTAATTTATGCTCC+GGG - Chr2:4433896-4433915 None:intergenic 30.0%
!!! TTTTTTCAAGTAGCCAAATG+GGG + Chr2:4434344-4434363 MsG0280006644.01.T01:intron 30.0%
AAAAGACATGGAGGTTGTTA+TGG + Chr2:4432868-4432887 MsG0280006644.01.T01:CDS 35.0%
AAAATCCTTGGCATTTGCTT+TGG + Chr2:4433088-4433107 MsG0280006644.01.T01:CDS 35.0%
AAACATGACACTTGATGAGA+CGG - Chr2:4433647-4433666 None:intergenic 35.0%
AAGAGATGTTAGAAAGAGTG+AGG + Chr2:4432794-4432813 MsG0280006644.01.T01:exon 35.0%
AAGGTCAATGTCCATATTCT+TGG - Chr2:4433915-4433934 None:intergenic 35.0%
AATTAGACCACATGTCGAAA+AGG - Chr2:4434802-4434821 None:intergenic 35.0%
AGAAGATTTGATCCATGGAA+TGG + Chr2:4435823-4435842 MsG0280006644.01.T01:intron 35.0%
AGACTGGAATTGAGATGTTT+AGG + Chr2:4435481-4435500 MsG0280006644.01.T01:CDS 35.0%
AGATTCACACACATTATGTG+TGG - Chr2:4435010-4435029 None:intergenic 35.0%
AGGTATGGAAATCACATGTT+GGG + Chr2:4435501-4435520 MsG0280006644.01.T01:CDS 35.0%
ATACCACAATTAATGAGACG+AGG - Chr2:4434070-4434089 None:intergenic 35.0%
ATGATTTGATGCATGAGATG+AGG + Chr2:4433795-4433814 MsG0280006644.01.T01:intron 35.0%
ATTCCCTCAACAAAAATCCT+TGG + Chr2:4433076-4433095 MsG0280006644.01.T01:CDS 35.0%
CACTAACCGTAATTTAATCC+AGG + Chr2:4435581-4435600 MsG0280006644.01.T01:CDS 35.0%
CTAAACATACTTACGGTTAG+AGG - Chr2:4434317-4434336 None:intergenic 35.0%
CTTTGTCTCACATTTCTGAA+AGG + Chr2:4436192-4436211 MsG0280006644.01.T01:CDS 35.0%
GAAGATTTGATCCATGGAAT+GGG + Chr2:4435824-4435843 MsG0280006644.01.T01:intron 35.0%
GGAATTGAGATGTTTAGGTA+TGG + Chr2:4435486-4435505 MsG0280006644.01.T01:CDS 35.0%
GGGATAATTTATGTAGGGAT+TGG + Chr2:4434957-4434976 MsG0280006644.01.T01:intron 35.0%
GTGTGTAAATAATACGTACC+TGG - Chr2:4435602-4435621 None:intergenic 35.0%
TAGGTATGGAAATCACATGT+TGG + Chr2:4435500-4435519 MsG0280006644.01.T01:CDS 35.0%
TGATTTGATGCATGAGATGA+GGG + Chr2:4433796-4433815 MsG0280006644.01.T01:intron 35.0%
TGTCAATGTTGAATTCAGGA+TGG - Chr2:4435536-4435555 None:intergenic 35.0%
TGTTAATGAAGAGTTTCCTG+AGG + Chr2:4432945-4432964 MsG0280006644.01.T01:CDS 35.0%
TTTATGAGTCATAGCTCAGT+TGG + Chr2:4434925-4434944 MsG0280006644.01.T01:intron 35.0%
! AATGCCAAGGATTTTTGTTG+AGG - Chr2:4433083-4433102 None:intergenic 35.0%
! ATATGTTCCTTTTCGACATG+TGG + Chr2:4434792-4434811 MsG0280006644.01.T01:intron 35.0%
! ATGCCAAGGATTTTTGTTGA+GGG - Chr2:4433082-4433101 None:intergenic 35.0%
!! ATAATGTGGGCCATTTTGAT+AGG + Chr2:4432652-4432671 MsG0280006644.01.T01:five_prime_UTR 35.0%
!! TAATGTGGGCCATTTTGATA+GGG + Chr2:4432653-4432672 MsG0280006644.01.T01:five_prime_UTR 35.0%
!! TGCAATTTTAATGTGTGGAG+AGG + Chr2:4432828-4432847 MsG0280006644.01.T01:CDS 35.0%
!!! TATGATGGTTTTGTCATCAC+TGG + Chr2:4432985-4433004 MsG0280006644.01.T01:CDS 35.0%
!!! TTTTTCAAGTAGCCAAATGG+GGG + Chr2:4434345-4434364 MsG0280006644.01.T01:intron 35.0%
AAATAAATACCTCATCCCGG+TGG - Chr2:4435344-4435363 None:intergenic 40.0%
AAATGAACATCATCGTCCTC+AGG - Chr2:4432964-4432983 None:intergenic 40.0%
AAGGCATACATCACAAAGCA+AGG - Chr2:4435968-4435987 None:intergenic 40.0%
ACACATTATGTGTGGAGAAG+TGG - Chr2:4435002-4435021 None:intergenic 40.0%
ACATTATGTGTGGAGAAGTG+GGG - Chr2:4435000-4435019 None:intergenic 40.0%
ACATTTGTGGTTCAGACAGA+CGG - Chr2:4434674-4434693 None:intergenic 40.0%
AGGCATACATCACAAAGCAA+GGG - Chr2:4435967-4435986 None:intergenic 40.0%
CACAATTAATGAGACGAGGA+GGG - Chr2:4434066-4434085 None:intergenic 40.0%
CACATTATGTGTGGAGAAGT+GGG - Chr2:4435001-4435020 None:intergenic 40.0%
GATTTGATGCATGAGATGAG+GGG + Chr2:4433797-4433816 MsG0280006644.01.T01:intron 40.0%
TAAGACACTCTCATCATGCA+TGG + Chr2:4435061-4435080 MsG0280006644.01.T01:intron 40.0%
TACACACTAGTTCCATTCCA+TGG + Chr2:4432695-4432714 MsG0280006644.01.T01:five_prime_UTR 40.0%
TAGAAAGAGTGAGGAAGAAG+AGG + Chr2:4432803-4432822 MsG0280006644.01.T01:CDS 40.0%
TAGATAATTGGGCGTGCATT+GGG + Chr2:4435210-4435229 MsG0280006644.01.T01:intron 40.0%
TCAATGTGTGAACAAGAGTG+AGG - Chr2:4433056-4433075 None:intergenic 40.0%
TGCAGACAATGAGGATAGTA+TGG + Chr2:4432616-4432635 MsG0280006644.01.T01:five_prime_UTR 40.0%
TGCTTCGCATGTAAAGATGA+AGG + Chr2:4436131-4436150 MsG0280006644.01.T01:CDS 40.0%
TGGGGACATATGTCAGAAAA+TGG + Chr2:4434828-4434847 MsG0280006644.01.T01:intron 40.0%
TTGATGAATCCAAGGGTCAT+TGG - Chr2:4433031-4433050 None:intergenic 40.0%
TTTCACTCTTCAAATGCCAC+CGG + Chr2:4435325-4435344 MsG0280006644.01.T01:CDS 40.0%
! ACAAAAATGTTGGCTGAGGA+AGG + Chr2:4432898-4432917 MsG0280006644.01.T01:CDS 40.0%
! AGCATATCTGAATGATGACG+AGG - Chr2:4435630-4435649 None:intergenic 40.0%
! ATGTGGATGTTTGGAATTGC+AGG + Chr2:4436101-4436120 MsG0280006644.01.T01:intron 40.0%
! ATTGGTTGGTCAGAAAAGAC+TGG + Chr2:4435465-4435484 MsG0280006644.01.T01:CDS 40.0%
! CTTCACAAAAATGTTGGCTG+AGG + Chr2:4432894-4432913 MsG0280006644.01.T01:CDS 40.0%
! GAAACAATTTTCCCCCCATT+TGG - Chr2:4434360-4434379 None:intergenic 40.0%
!! TGAGGAGTTGATGAATCCAA+GGG - Chr2:4433038-4433057 None:intergenic 40.0%
!!! TTTTCAAGTAGCCAAATGGG+GGG + Chr2:4434346-4434365 MsG0280006644.01.T01:intron 40.0%
AAACACAAATGGCGTGACCA+TGG - Chr2:4432715-4432734 None:intergenic 45.0%
AAGGTGACACATGAGAAAGC+AGG + Chr2:4434277-4434296 MsG0280006644.01.T01:intron 45.0%
AATCACATGTTGGGCATCCA+AGG + Chr2:4435510-4435529 MsG0280006644.01.T01:CDS 45.0%
AGGTGACACATGAGAAAGCA+GGG + Chr2:4434278-4434297 MsG0280006644.01.T01:intron 45.0%
ATGACACTTGATGAGACGGA+GGG - Chr2:4433643-4433662 None:intergenic 45.0%
ATTACGAGATCCAGACACAG+AGG + Chr2:4436158-4436177 MsG0280006644.01.T01:CDS 45.0%
CAGATTCTGATCCCATTCCA+TGG - Chr2:4435838-4435857 None:intergenic 45.0%
CATCACAAAGCAAGGGGATA+AGG - Chr2:4435960-4435979 None:intergenic 45.0%
CATGGAATGGGATCAGAATC+TGG + Chr2:4435836-4435855 MsG0280006644.01.T01:intron 45.0%
CCACAATTAATGAGACGAGG+AGG - Chr2:4434067-4434086 None:intergenic 45.0%
CCTCCTCGTCTCATTAATTG+TGG + Chr2:4434064-4434083 MsG0280006644.01.T01:intron 45.0%
CTGAAGCAGAGGTAATTGGT+TGG + Chr2:4435451-4435470 MsG0280006644.01.T01:CDS 45.0%
GGCATACATCACAAAGCAAG+GGG - Chr2:4435966-4435985 None:intergenic 45.0%
GTAGATAATTGGGCGTGCAT+TGG + Chr2:4435209-4435228 MsG0280006644.01.T01:intron 45.0%
TGTTGAATTCAGGATGGCCT+TGG - Chr2:4435530-4435549 None:intergenic 45.0%
TTCACTCTTCAAATGCCACC+GGG + Chr2:4435326-4435345 MsG0280006644.01.T01:CDS 45.0%
!! AGCTCAGTTGGTAGCTATCA+GGG + Chr2:4434937-4434956 MsG0280006644.01.T01:intron 45.0%
!! GTGAGGAGTTGATGAATCCA+AGG - Chr2:4433039-4433058 None:intergenic 45.0%
!! TAGCTCAGTTGGTAGCTATC+AGG + Chr2:4434936-4434955 MsG0280006644.01.T01:intron 45.0%
!!! AAAGTTAATTTTAATAATTA+AGG + Chr2:4434200-4434219 MsG0280006644.01.T01:intron 5.0%
AGATTTGCCTGCTGAAGCAG+AGG + Chr2:4435440-4435459 MsG0280006644.01.T01:CDS 50.0%
AGGGATTGGGGTTCGAACAT+CGG + Chr2:4434971-4434990 MsG0280006644.01.T01:intron 50.0%
ATAATTGGGCGTGCATTGGG+AGG + Chr2:4435213-4435232 MsG0280006644.01.T01:CDS 50.0%
ATGCACATGCCAATGACCCT+TGG + Chr2:4433019-4433038 MsG0280006644.01.T01:CDS 50.0%
CAAATGGCGTGACCATGGAA+TGG - Chr2:4432710-4432729 None:intergenic 50.0%
CATGACACTTGATGAGACGG+AGG - Chr2:4433644-4433663 None:intergenic 50.0%
CCAATTACCTCTGCTTCAGC+AGG - Chr2:4435450-4435469 None:intergenic 50.0%
CCTGCTGAAGCAGAGGTAAT+TGG + Chr2:4435447-4435466 MsG0280006644.01.T01:CDS 50.0%
GGCTGAGGAAGGAGAAACAT+GGG + Chr2:4432909-4432928 MsG0280006644.01.T01:CDS 50.0%
GTGACTCATTGTACTGCACG+TGG - Chr2:4435884-4435903 None:intergenic 50.0%
TAATTGGGCGTGCATTGGGA+GGG + Chr2:4435214-4435233 MsG0280006644.01.T01:CDS 50.0%
TGGCTGAGGAAGGAGAAACA+TGG + Chr2:4432908-4432927 MsG0280006644.01.T01:CDS 50.0%
! GTTTTCCATGCCTCTGTGTC+TGG - Chr2:4436171-4436190 None:intergenic 50.0%
AAAGTGGTGCGTTCTGGTGC+AGG + Chr2:4435237-4435256 MsG0280006644.01.T01:CDS 55.0%
CTTCAAATGCCACCGGGATG+AGG + Chr2:4435332-4435351 MsG0280006644.01.T01:CDS 55.0%
GAGATCCAGACACAGAGGCA+TGG + Chr2:4436163-4436182 MsG0280006644.01.T01:CDS 55.0%
GGTGGCCAAAGCAAATGCCA+AGG - Chr2:4433096-4433115 None:intergenic 55.0%
TGGCATTTGCTTTGGCCACC+AGG + Chr2:4433096-4433115 MsG0280006644.01.T01:CDS 55.0%
! TCTGGTGCAGGTTGGGACAT+AGG + Chr2:4435249-4435268 MsG0280006644.01.T01:CDS 55.0%
GCGTGCATTGGGAGGGAAAG+TGG + Chr2:4435221-4435240 MsG0280006644.01.T01:CDS 60.0%
GGAGGGAAAGTGGTGCGTTC+TGG + Chr2:4435231-4435250 MsG0280006644.01.T01:CDS 60.0%
GGTGCGTTCTGGTGCAGGTT+GGG + Chr2:4435242-4435261 MsG0280006644.01.T01:CDS 60.0%
TGGTGCGTTCTGGTGCAGGT+TGG + Chr2:4435241-4435260 MsG0280006644.01.T01:CDS 60.0%
Chromosome Type Strat End Strand Name
Chr2 gene 4432569 4436433 4432569 ID=MsG0280006644.01;Name=MsG0280006644.01
Chr2 mRNA 4432569 4436433 4432569 ID=MsG0280006644.01.T01;Parent=MsG0280006644.01;Name=MsG0280006644.01.T01;_AED=0.35;_eAED=0.35;_QI=230|0.5|0.8|1|1|1|5|209|250
Chr2 exon 4436123 4436433 4436123 ID=MsG0280006644.01.T01:exon:4718;Parent=MsG0280006644.01.T01
Chr2 exon 4435435 4435602 4435435 ID=MsG0280006644.01.T01:exon:4717;Parent=MsG0280006644.01.T01
Chr2 exon 4435213 4435353 4435213 ID=MsG0280006644.01.T01:exon:4716;Parent=MsG0280006644.01.T01
Chr2 exon 4434958 4434980 4434958 ID=MsG0280006644.01.T01:exon:4715;Parent=MsG0280006644.01.T01
Chr2 exon 4432569 4433117 4432569 ID=MsG0280006644.01.T01:exon:4714;Parent=MsG0280006644.01.T01
Chr2 five_prime_UTR 4432569 4432798 4432569 ID=MsG0280006644.01.T01:five_prime_utr;Parent=MsG0280006644.01.T01
Chr2 CDS 4432799 4433117 4432799 ID=MsG0280006644.01.T01:cds;Parent=MsG0280006644.01.T01
Chr2 CDS 4434958 4434980 4434958 ID=MsG0280006644.01.T01:cds;Parent=MsG0280006644.01.T01
Chr2 CDS 4435213 4435353 4435213 ID=MsG0280006644.01.T01:cds;Parent=MsG0280006644.01.T01
Chr2 CDS 4435435 4435602 4435435 ID=MsG0280006644.01.T01:cds;Parent=MsG0280006644.01.T01
Chr2 CDS 4436123 4436224 4436123 ID=MsG0280006644.01.T01:cds;Parent=MsG0280006644.01.T01
Chr2 three_prime_UTR 4436225 4436433 4436225 ID=MsG0280006644.01.T01:three_prime_utr;Parent=MsG0280006644.01.T01
Gene Sequence

>MsG0280006644.01.T01

ATGTTAGAAAGAGTGAGGAAGAAGAGGTATGCAATTTTAATGTGTGGAGAGGATTCAGAATATTTGTTGAAAAGACATGGAGGTTGTTATGGTTTCTTCACAAAAATGTTGGCTGAGGAAGGAGAAACATGGGATCTTTACAAAGTTGTTAATGAAGAGTTTCCTGAGGACGATGATGTTCATTTCTATGATGGTTTTGTCATCACTGGAAGCTGCAAAGATGCACATGCCAATGACCCTTGGATTCATCAACTCCTCACTCTTGTTCACACATTGAATTCCCTCAACAAAAATCCTTGGCATTTGCTTTGGCCACCAGGGATAATTTATGTAGGGATTGGGATAATTGGGCGTGCATTGGGAGGGAAAGTGGTGCGTTCTGGTGCAGGTTGGGACATAGGTGTCTCAACTATCAATTTGTTACAATCATCATCTCTCAATTTACCATCAAAACTTTCACTCTTCAAATGCCACCGGGATGAGGTTATAGATTTGCCTGCTGAAGCAGAGGTAATTGGTTGGTCAGAAAAGACTGGAATTGAGATGTTTAGGTATGGAAATCACATGTTGGGCATCCAAGGCCATCCTGAATTCAACATTGACATCTTTTTTCACTTTATAGACCGTATCACTAACCGTAATTTAATCCAGGAAGCTTTTGCTTCGCATGTAAAGATGAAGGCAGCATTACGAGATCCAGACACAGAGGCATGGAAAACACTTTGTCTCACATTTCTGAAAGGTCAATTATGA
Protein sequence

>MsG0280006644.01.T01

MLERVRKKRYAILMCGEDSEYLLKRHGGCYGFFTKMLAEEGETWDLYKVVNEEFPEDDDVHFYDGFVITGSCKDAHANDPWIHQLLTLVHTLNSLNKNPWHLLWPPGIIYVGIGIIGRALGGKVVRSGAGWDIGVSTINLLQSSSLNLPSKLSLFKCHRDEVIDLPAEAEVIGWSEKTGIEMFRYGNHMLGIQGHPEFNIDIFFHFIDRITNRNLIQEAFASHVKMKAALRDPDTEAWKTLCLTFLKGQL*