AlfalfaGEDB | MsG0280006520.01

M. sativa cultivar ZhongmuNo.1 / MsG0280006520.01

KEGG: K04043
GO: GO:0005524 GO:0006457 GO:0051082
PFAM: PF00012

Nr:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0280006520.01.T01	XP_003593307.1	89.645	705	22	3	1	683	1	676	0	1221

Showing 1 to 1 of 1 entries

Previous1Next

Swissprot:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0280006520.01.T01	Q01899	84.023	701	61	3	6	683	3	675	0	1168

Showing 1 to 1 of 1 entries

Previous1Next

Trembl:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0280006520.01.T01	A2Q199	89.645	705	22	3	1	683	1	676	0.0	1221

Showing 1 to 1 of 1 entries

Previous1Next

TFs/TRs:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Protein Kinases:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Network:

Co-expression Network

Show entries

Search:

Gene1	Gene2	correlation coefficient	p_value	FDR
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

PPI

Show entries

Search:

Gene1	Gene2	Type
MsG0280006520.01	MsG0280006307.01	PPI
MsG0280006520.01	MsG0280010567.01	PPI
MsG0680032925.01	MsG0280006520.01	PPI
MsG0680032925.01	MsG0280006520.01	PPI

Showing 1 to 4 of 4 entries

Previous1Next

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0280006520.01.T01	MTR_2g010020	89.645	705	22	3	1	683	1	676	0.0	1221
MsG0280006520.01.T01	MTR_2g010020	89.518	706	22	4	1	683	1	677	0.0	1217
MsG0280006520.01.T01	MTR_4g092920	81.883	701	76	3	6	683	3	675	0.0	1125
MsG0280006520.01.T01	MTR_4g092920	82.250	569	50	3	138	683	1	541	0.0	914
MsG0280006520.01.T01	MTR_2g005690	49.327	669	280	5	31	670	46	684	0.0	630
MsG0280006520.01.T01	MTR_7g099680	45.619	662	280	12	57	674	10	635	0.0	532
MsG0280006520.01.T01	MTR_4g063720	46.975	628	254	11	57	640	10	602	6.60e-180	527
MsG0280006520.01.T01	MTR_4g063710	46.975	628	254	11	57	640	10	602	1.49e-179	526
MsG0280006520.01.T01	MTR_7g024390	46.815	628	255	11	57	640	10	602	1.20e-178	523
MsG0280006520.01.T01	MTR_7g024580	45.942	653	269	14	57	662	10	625	4.01e-177	520

Showing 1 to 10 of 107 entries

Previous1 2 3 4 5…11Next

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0280006520.01.T01	AT5G09590	77.715	709	102	4	3	683	2	682	0.0	1095
MsG0280006520.01.T01	AT4G37910	74.858	704	122	4	3	680	2	676	0.0	1022
MsG0280006520.01.T01	AT4G37910	74.858	704	122	4	3	680	2	676	0.0	1022
MsG0280006520.01.T01	AT4G24280	52.063	630	247	4	50	654	74	673	0.0	625
MsG0280006520.01.T01	AT5G49910	50.683	659	252	6	56	671	80	708	0.0	625
MsG0280006520.01.T01	AT5G02500	47.125	626	256	12	57	640	10	602	0.0	530
MsG0280006520.01.T01	AT1G56410	46.345	643	268	11	57	657	10	617	3.92e-180	526
MsG0280006520.01.T01	AT5G02490	46.805	626	258	11	57	640	10	602	1.52e-179	526
MsG0280006520.01.T01	AT3G12580	45.372	659	279	12	57	671	10	631	2.84e-178	523
MsG0280006520.01.T01	AT3G09440	47.195	606	244	10	57	621	10	580	2.80e-176	518

Showing 1 to 10 of 39 entries

Previous1 2 3 4Next

Find 205 sgRNAs with CRISPR-Local

Find 302 sgRNAs with CRISPR-GE

CRISPR-Local

Show entries

Search:

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAGATGCTGGTAGAATTGC+AGG	0.328628	2:+3041848	MsG0280006520.01.T01:CDS
AAAGTCATCGAGAATTCTGA+AGG	0.626296	2:+3041458	MsG0280006520.01.T01:CDS
AAATTGACGAAACCACCTCC+TGG	0.475624	2:-3042507	None:intergenic
AACAAACGGTGACACTTTCT+TGG	0.336793	2:+3042120	MsG0280006520.01.T01:CDS
AACAAGGCCGTCTCCAAGAT+TGG	0.416194	2:+3043984	MsG0280006520.01.T01:CDS
AACAATCAGCAGTGGATTGA+AGG	0.457395	2:-3042738	None:intergenic
AACACTAAGCCTGCACATGT+AGG	0.670184	2:+3041143	MsG0280006520.01.T01:CDS
AACCCAGTAAACACTATCTC+TGG	0.477225	2:+3041566	MsG0280006520.01.T01:CDS
AACGGTGACACTTTCTTGGG+AGG	0.609522	2:+3042124	MsG0280006520.01.T01:CDS
AAGAACTTCGTCAATGTCCT+TGG	0.502218	2:-3042452	None:intergenic

Showing 1 to 10 of 205 entries

Previous1 2 3 4 5…21Next

CRISPR-GE

Show entries

Search:

sgRNA_sequence	Strand	Position	Region	GC_content
AAGTCAACAAAATACGTCAA+CGG	-	Chr2:3043207-3043226	None:intergenic	30.0%
ACAAAGAAAGCTGAAAATCA+AGG	-	Chr2:3040214-3040233	None:intergenic	30.0%
ACTGAATACACTTCCAAAAA+TGG	-	Chr2:3043303-3043322	None:intergenic	30.0%
ATTAACTAGAGCCTCAAATT+TGG	-	Chr2:3042371-3042390	None:intergenic	30.0%
ATTACTATTAAGTCATCTGG+TGG	+	Chr2:3043705-3043724	MsG0280006520.01.T01:CDS	30.0%
CAAAAGAAGATTCTAGATCA+TGG	-	Chr2:3039895-3039914	None:intergenic	30.0%
CTATATATGAGGGTTTAGTT+AGG	-	Chr2:3039986-3040005	None:intergenic	30.0%
CTGAATACACTTCCAAAAAT+GGG	-	Chr2:3043302-3043321	None:intergenic	30.0%
CTTATTTCAATGATGCTCAA+AGG	+	Chr2:3041816-3041835	MsG0280006520.01.T01:CDS	30.0%
CTTTGTAATATCATTGTTCC+AGG	+	Chr2:3043461-3043480	MsG0280006520.01.T01:intron	30.0%

Showing 1 to 10 of 302 entries

Previous1 2 3 4 5…31Next

Chromosome	Type	Strat	End	Strand	Name
Chr2	gene	3039847	3044359	3039847	ID=MsG0280006520.01;Name=MsG0280006520.01
Chr2	mRNA	3039847	3044359	3039847	ID=MsG0280006520.01.T01;Parent=MsG0280006520.01;Name=MsG0280006520.01.T01;_AED=0.24;_eAED=0.24;_QI=249\|0.66\|0.71\|1\|0.83\|0.71\|7\|230\|683
Chr2	exon	3039847	3040173	3039847	ID=MsG0280006520.01.T01:exon:582;Parent=MsG0280006520.01.T01
Chr2	exon	3041134	3041198	3041134	ID=MsG0280006520.01.T01:exon:583;Parent=MsG0280006520.01.T01
Chr2	exon	3041278	3041356	3041278	ID=MsG0280006520.01.T01:exon:584;Parent=MsG0280006520.01.T01
Chr2	exon	3041452	3041952	3041452	ID=MsG0280006520.01.T01:exon:585;Parent=MsG0280006520.01.T01
Chr2	exon	3042112	3042816	3042112	ID=MsG0280006520.01.T01:exon:586;Parent=MsG0280006520.01.T01
Chr2	exon	3043483	3044170	3043483	ID=MsG0280006520.01.T01:exon:587;Parent=MsG0280006520.01.T01
Chr2	exon	3044194	3044359	3044194	ID=MsG0280006520.01.T01:exon:588;Parent=MsG0280006520.01.T01
Chr2	five_prime_UTR	3039847	3040095	3039847	ID=MsG0280006520.01.T01:five_prime_utr;Parent=MsG0280006520.01.T01
Chr2	CDS	3040096	3040173	3040096	ID=MsG0280006520.01.T01:cds;Parent=MsG0280006520.01.T01
Chr2	CDS	3041134	3041198	3041134	ID=MsG0280006520.01.T01:cds;Parent=MsG0280006520.01.T01
Chr2	CDS	3041278	3041356	3041278	ID=MsG0280006520.01.T01:cds;Parent=MsG0280006520.01.T01
Chr2	CDS	3041452	3041952	3041452	ID=MsG0280006520.01.T01:cds;Parent=MsG0280006520.01.T01
Chr2	CDS	3042112	3042816	3042112	ID=MsG0280006520.01.T01:cds;Parent=MsG0280006520.01.T01
Chr2	CDS	3043483	3044106	3043483	ID=MsG0280006520.01.T01:cds;Parent=MsG0280006520.01.T01
Chr2	three_prime_UTR	3044107	3044170	3044107	ID=MsG0280006520.01.T01:three_prime_utr;Parent=MsG0280006520.01.T01
Chr2	three_prime_UTR	3044194	3044359	3044194	ID=MsG0280006520.01.T01:three_prime_utr;Parent=MsG0280006520.01.T01

Gene Sequence

>MsG0280006520.01.T01

ATGGCCGCCGCTACTGCCTTGCTCCGCTCTCTCCGACGCCGTGACGTTGCTTCTTCTTCCTTCTCCGCCTATCGTTCGTTGATAGGTAACACTAAGCCTGCACATGTAGGTCACAATTGGTCAAGTTTGTCTCGACCATTCAGTTCAAGGCCTGCTGGAAATGATGTTATTGGTATTGATTTAGGTACAACTAATTCATGTGTTTCTGTTATGGAAGGAAAGAATCCAAAAGTCATCGAGAATTCTGAAGGTGCACGAACTACACCATCTGTGGTTGCCTTCTCTCAGAAAGGGGAGCTGCTTGTAGGCACACCAGCCAAGCGTCAGGCTGTAACTAACCCAGTAAACACTATCTCTGGTGCCAAGCGCTTGATTGGTAGGCGATTTGAGGACGCTCAAACTCAAAAAGAGATGAAAATGGTTCCATACAAGATAGTTAAGGCTCCAAATGGAGATGCATGGGTTGAAGCTAATGGGCAGCAGTATTCACCTAGTCAGATTGGTGCCTTCGTTCTCACCAAAATGAAGGAAACTGCAGAAGCTTATCTTGGAAAGAGCGTTTCTAAAGCTGTTATTACTGTTCCAGCTTATTTCAATGATGCTCAAAGGCAGGCAACAAAAGATGCTGGTAGAATTGCAGGTCTTGAGGTGCTTAGAATCATCAATGAGCCCACTGCTGCTGCACTTTCATATGGGATGACAAACAAGGAAGGTCTCATTGCTGTGAAAGCAACAAACGGTGACACTTTCTTGGGAGGAGAGGACTTCGACAATGCCTTGTTGGATTTTCTGGTGAATGAGTTCAAGAGGTCTGAGAGTATTGACCTTTCAAAGGATAAGCTTGCCTTGCAAAGGCTTCGTGAAGCTGCTGAGAAAGCTAAGATAGAACTGTCTTCAACATCTCAGACAGAAATTAACTTGCCTTTCATCACTGCTGATGCATCTGGTGCAAAACATCTCAACATCACATTAACTAGATCCAAATTTGAGGCTCTAGTTAATAACTTGATCGAACGAACTAAGGCTCCATGTCAGAGCTGTTTGAAGGATGCAAATATTTCTACCAAGGACATTGACGAAGTTCTTCTTGTTGGAGGGATGACTCGTGTGCCAAAAGTCCAGGAGGTGGTTTCGTCAATTTTTGGCAAGTCTCCTTGTAAAGGAGTAAATCCTGACGAGGCAGTTGCAATGGGAGCAGCACTCCAGGGTGGTATCCTACGTGGAGATGTCAAAGAGCTCCTACTCTTGGATGTTACACCACTCTCTTTGGGTATTGAGACTTTGGGTGGTATCTTTACAAGGTTAATCAACCGCAACACTACTATTCCTACAAAAAAGAGTCAGGTAATCCTTCAATCCACTGCTGATTGTTATATAACAACTGTCTCTAAGTTGCTAATCTTTGGAAGTGTATTCTGTCTTTACGAAGTCTTTTCAACGGCAGCTGACAATCAAACACAAGTAGGAATCAAAGTGTTACAAGGTGAGCGGGAAATGGCTTCCGACAACAAAATGCTTGGAGAATTTGAGCTTGTTGGCCTTCCTCCTGCTCCCAGAGGTATGCCTCAGATTGAGGTCACCTTTGACATTGATGCCAACGGTATTGTTACCGTGTCTGCCAAGGACAAGTCCACTGGCAAAGAGCAGCAAATTACTATTAAGTCATCTGGTGGGCTTTCTGATGATGATATTCAAAAGATGGTCCAAGAAGCCGAGTTGCATGCTCAGAAAGACCAAGAAAGAAAGAGTCTGATCGATATTAGAAACTCTGCAGACACATCAATTTACAGCATTGAGAAAAGCCTAAGTGAATACAGGGAGAAGATACCTGCCGAAGTGGCTAAGGAAATCGAGGATGCTGTTTCTGATTTGAGAAGTGCGATGGATGGGGACAGTGCAGATGAAATCAAGTCGAAACTTGATGCTGCAAACAAGGCCGTCTCCAAGATTGGAGAGCACATGTCAGGTGGCTCTAGTAGTGGTCCCTCATCTGGTGGTTCTCAAGGTGGGGACCAGGCTCCAGAGGCAGAATATGAAGAGGTGAAGAAGTGA

Protein sequence

>MsG0280006520.01.T01

MAAATALLRSLRRRDVASSSFSAYRSLIGNTKPAHVGHNWSSLSRPFSSRPAGNDVIGIDLGTTNSCVSVMEGKNPKVIENSEGARTTPSVVAFSQKGELLVGTPAKRQAVTNPVNTISGAKRLIGRRFEDAQTQKEMKMVPYKIVKAPNGDAWVEANGQQYSPSQIGAFVLTKMKETAEAYLGKSVSKAVITVPAYFNDAQRQATKDAGRIAGLEVLRIINEPTAAALSYGMTNKEGLIAVKATNGDTFLGGEDFDNALLDFLVNEFKRSESIDLSKDKLALQRLREAAEKAKIELSSTSQTEINLPFITADASGAKHLNITLTRSKFEALVNNLIERTKAPCQSCLKDANISTKDIDEVLLVGGMTRVPKVQEVVSSIFGKSPCKGVNPDEAVAMGAALQGGILRGDVKELLLLDVTPLSLGIETLGGIFTRLINRNTTIPTKKSQVILQSTADCYITTVSKLLIFGSVFCLYEVFSTAADNQTQVGIKVLQGEREMASDNKMLGEFELVGLPPAPRGMPQIEVTFDIDANGIVTVSAKDKSTGKEQQITIKSSGGLSDDDIQKMVQEAELHAQKDQERKSLIDIRNSADTSIYSIEKSLSEYREKIPAEVAKEIEDAVSDLRSAMDGDSADEIKSKLDAANKAVSKIGEHMSGGSSSGPSSGGSQGGDQAPEAEYEEVKK*