Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0280006564.01.T01 | XP_003593377.1 | 90.499 | 421 | 34 | 3 | 1 | 417 | 1 | 419 | 0 | 668 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0280006564.01.T01 | Q9SYA9 | 33.178 | 428 | 209 | 17 | 7 | 415 | 3 | 372 | 1.16E-27 | 116 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0280006564.01.T01 | G7IK18 | 90.499 | 421 | 34 | 3 | 1 | 417 | 1 | 419 | 0.0 | 668 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MsG0180004263.01 | MsG0280006564.01 | 0.800553 | 1.365724e-48 | 6.377676e-46 |
| MsG0280006564.01 | MsG0480021424.01 | 0.821668 | 3.571705e-53 | 2.924660e-50 |
| MsG0280006564.01 | MsG0780041829.01 | 0.808512 | 2.986232e-50 | 1.710757e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|---|---|
| MsG0580027688.01 | MsG0280006564.01 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0280006564.01.T01 | MTR_2g010790 | 90.499 | 421 | 34 | 3 | 1 | 417 | 1 | 419 | 0.0 | 668 |
| MsG0280006564.01.T01 | MTR_4g109950 | 54.430 | 158 | 65 | 4 | 231 | 386 | 150 | 302 | 6.21e-39 | 142 |
| MsG0280006564.01.T01 | MTR_3g070120 | 34.114 | 299 | 158 | 9 | 123 | 403 | 85 | 362 | 2.90e-34 | 131 |
| MsG0280006564.01.T01 | MTR_7g114600 | 30.921 | 152 | 83 | 4 | 149 | 289 | 68 | 208 | 2.05e-13 | 72.0 |
| MsG0280006564.01.T01 | MTR_4g109910 | 59.701 | 67 | 24 | 2 | 317 | 382 | 79 | 143 | 8.38e-12 | 63.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0280006564.01.T01 | AT1G61730 | 33.178 | 428 | 209 | 17 | 7 | 415 | 3 | 372 | 1.19e-28 | 116 |
| MsG0280006564.01.T01 | AT4G00390 | 31.605 | 405 | 209 | 14 | 14 | 405 | 6 | 355 | 1.44e-22 | 98.6 |
| MsG0280006564.01.T01 | AT1G11510 | 30.997 | 371 | 186 | 15 | 57 | 403 | 15 | 339 | 7.47e-22 | 96.7 |
| MsG0280006564.01.T01 | AT1G11510 | 30.194 | 361 | 173 | 13 | 57 | 403 | 15 | 310 | 2.00e-19 | 89.0 |
| MsG0280006564.01.T01 | AT4G25210 | 26.176 | 340 | 175 | 11 | 109 | 410 | 63 | 364 | 4.41e-15 | 76.6 |
| MsG0280006564.01.T01 | AT1G66420 | 36.090 | 133 | 69 | 4 | 157 | 285 | 53 | 173 | 2.45e-14 | 73.6 |
| MsG0280006564.01.T01 | AT1G44810 | 26.761 | 284 | 127 | 8 | 6 | 285 | 3 | 209 | 1.04e-13 | 71.6 |
| MsG0280006564.01.T01 | AT2G01370 | 37.500 | 112 | 54 | 3 | 181 | 284 | 66 | 169 | 2.33e-13 | 70.1 |
| MsG0280006564.01.T01 | AT4G01260 | 29.078 | 282 | 147 | 9 | 154 | 407 | 57 | 313 | 1.20e-11 | 65.9 |
| MsG0280006564.01.T01 | AT5G14280 | 42.105 | 95 | 45 | 3 | 204 | 288 | 63 | 157 | 2.08e-11 | 65.1 |
| MsG0280006564.01.T01 | AT2G25650 | 35.000 | 140 | 73 | 6 | 204 | 332 | 67 | 199 | 2.28e-11 | 65.5 |
Find 115 sgRNAs with CRISPR-Local
Find 142 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTTGGGCTTGGACTTGGGTT+TGG | 0.137721 | 2:-3494583 | None:intergenic |
| GAAGCAAGTGGTTTAACTTT+AGG | 0.199493 | 2:-3494545 | None:intergenic |
| TTGGGCTTGGACTTGGGTTT+GGG | 0.211588 | 2:-3494582 | None:intergenic |
| GATTCAGATTCAGCGGGTTT+AGG | 0.217235 | 2:-3494440 | None:intergenic |
| ATTGGGCTTGGGCTTGGACT+TGG | 0.238543 | 2:-3494589 | None:intergenic |
| AAGCAAGTGGTTTAACTTTA+GGG | 0.240022 | 2:-3494544 | None:intergenic |
| CAAGAAGAAATCAAGCAAAT+AGG | 0.257807 | 2:+3495408 | MsG0280006564.01.T01:CDS |
| TTGGAGCAAAATTGCTTCTA+AGG | 0.274708 | 2:+3495024 | MsG0280006564.01.T01:CDS |
| ATTCAGATTCAGCGGGTTTA+GGG | 0.293343 | 2:-3494439 | None:intergenic |
| GCACCGGAGTTGATTGGGCT+TGG | 0.293970 | 2:-3494601 | None:intergenic |
| TGAATCGCGCTGAGGTGGTT+AGG | 0.312947 | 2:+3495356 | MsG0280006564.01.T01:CDS |
| CACCGGAGTTGATTGGGCTT+GGG | 0.331829 | 2:-3494600 | None:intergenic |
| TTCTTCGTTGACTACTTTGT+CGG | 0.338007 | 2:-3494270 | None:intergenic |
| GTGGGTTCCGATTTCTGTTC+CGG | 0.345211 | 2:-3494509 | None:intergenic |
| TTGGGCTTGGGCTTGGACTT+GGG | 0.346800 | 2:-3494588 | None:intergenic |
| GCGAGGCGTTTCTTTGGCTT+TGG | 0.347433 | 2:-3494179 | None:intergenic |
| TTGTGATTCTCAAAGGGCTT+GGG | 0.351413 | 2:+3494807 | MsG0280006564.01.T01:CDS |
| TGGTCGGCACCGGAGTTGAT+TGG | 0.353683 | 2:-3494607 | None:intergenic |
| GGCACGCTTAGTTCCGGACT+TGG | 0.367669 | 2:-3494627 | None:intergenic |
| GTCAGATAGGGTTGAGTTGG+AGG | 0.367989 | 2:+3495291 | MsG0280006564.01.T01:CDS |
| TGCTCTCTTATCATGAGCTT+TGG | 0.370081 | 2:-3494984 | None:intergenic |
| GCAGACTAGATTGGCATTGC+AGG | 0.370825 | 2:+3495381 | MsG0280006564.01.T01:CDS |
| TCAGAATCCGGTTCTGAATC+TGG | 0.376206 | 2:+3494467 | MsG0280006564.01.T01:CDS |
| AAGAAGAAATCAAGCAAATA+GGG | 0.379593 | 2:+3495409 | MsG0280006564.01.T01:CDS |
| ACGAGAGCGAGGCGTTTCTT+TGG | 0.380520 | 2:-3494185 | None:intergenic |
| AGTGGTTTAACTTTAGGGTT+AGG | 0.384389 | 2:-3494539 | None:intergenic |
| GAGTTGATTGGGCTTGGGCT+TGG | 0.387162 | 2:-3494595 | None:intergenic |
| TTCGGCGGCACGCTTAGTTC+CGG | 0.394238 | 2:-3494633 | None:intergenic |
| GGTCGGCACCGGAGTTGATT+GGG | 0.403820 | 2:-3494606 | None:intergenic |
| TTCTGAACCGGAACAGAAAT+CGG | 0.410111 | 2:+3494502 | MsG0280006564.01.T01:CDS |
| GCGGGTTTAGGGGTAGAGAT+AGG | 0.413172 | 2:-3494428 | None:intergenic |
| CTTGTGATTCTCAAAGGGCT+TGG | 0.413788 | 2:+3494806 | MsG0280006564.01.T01:CDS |
| TCTCTTCAATTGCTGAGCAT+TGG | 0.418880 | 2:-3494915 | None:intergenic |
| GAATCGCGCTGAGGTGGTTA+GGG | 0.419146 | 2:+3495357 | MsG0280006564.01.T01:CDS |
| CTCGTCGGAGGAAGAGGCGG+TGG | 0.434145 | 2:-3494219 | None:intergenic |
| GGGGTAGAGATAGGAGTAGA+AGG | 0.435130 | 2:-3494419 | None:intergenic |
| ACTCCGGTGCCGACCAAGTC+CGG | 0.443071 | 2:+3494614 | MsG0280006564.01.T01:CDS |
| TCTGAATCCGGCTCAGAATC+CGG | 0.447335 | 2:+3494455 | MsG0280006564.01.T01:CDS |
| ATCGTTTCCAGTGTTACTTT+CGG | 0.449680 | 2:-3494651 | None:intergenic |
| TCGGAGGAAGAGGCGGTGGG+TGG | 0.451878 | 2:-3494215 | None:intergenic |
| TAAGAATGAAAGTGGAAAAG+TGG | 0.453012 | 2:+3495153 | MsG0280006564.01.T01:CDS |
| TTCGGTTCCAGATTCAGAAC+CGG | 0.454128 | 2:-3494474 | None:intergenic |
| AACCGAATCTGATTCTGAAC+CGG | 0.455116 | 2:+3494490 | MsG0280006564.01.T01:CDS |
| TCCATCTCCTTCTTCTTCTG+AGG | 0.458431 | 2:-3494306 | None:intergenic |
| GGAGAGGTGGAAGAAGTTGC+AGG | 0.459564 | 2:+3495312 | MsG0280006564.01.T01:CDS |
| TTCCGGTTCAGAATCAGATT+CGG | 0.461387 | 2:-3494492 | None:intergenic |
| AATCACTAAGAGTGCTAAGA+AGG | 0.463625 | 2:+3495078 | MsG0280006564.01.T01:CDS |
| AAGGAAGCAGCTGCATTTCA+CGG | 0.465241 | 2:+3494863 | MsG0280006564.01.T01:CDS |
| TTGATCCTCGTCGGAGGAAG+AGG | 0.466920 | 2:-3494225 | None:intergenic |
| ATAGTTACTAAGAATGAAAG+TGG | 0.473928 | 2:+3495145 | MsG0280006564.01.T01:CDS |
| GGAGTCAGATAGGGTTGAGT+TGG | 0.474759 | 2:+3495288 | MsG0280006564.01.T01:CDS |
| TGTGATTCTCAAAGGGCTTG+GGG | 0.482044 | 2:+3494808 | MsG0280006564.01.T01:CDS |
| GGGTATAGCTGTGCTGGATA+AGG | 0.490129 | 2:+3495234 | MsG0280006564.01.T01:CDS |
| GGGTTGAGTTGGAGGAGAGG+TGG | 0.490174 | 2:+3495299 | MsG0280006564.01.T01:CDS |
| GAGATAGGAGTAGAAGGAGG+AGG | 0.494629 | 2:-3494413 | None:intergenic |
| GGTTTAACTTTAGGGTTAGG+AGG | 0.498539 | 2:-3494536 | None:intergenic |
| TTCAGAACCGGATTCTGAGC+CGG | 0.501712 | 2:-3494462 | None:intergenic |
| CGCTTAGTTCCGGACTTGGT+CGG | 0.508280 | 2:-3494623 | None:intergenic |
| ACGAGCTTGTGATTCTCAAA+GGG | 0.508640 | 2:+3494801 | MsG0280006564.01.T01:CDS |
| TCTAAGGAAGCTGAAGAAAA+CGG | 0.508657 | 2:+3495040 | MsG0280006564.01.T01:CDS |
| GTTCCGGACTTGGTCGGCAC+CGG | 0.509635 | 2:-3494617 | None:intergenic |
| AAGAAAACCACCGGTGGTGG+TGG | 0.509946 | 2:+3494689 | MsG0280006564.01.T01:CDS |
| AAATGGTGGTTCTGCTAGGA+AGG | 0.513798 | 2:+3495114 | MsG0280006564.01.T01:CDS |
| AAGAAGAAAACCACCGGTGG+TGG | 0.515031 | 2:+3494686 | MsG0280006564.01.T01:CDS |
| GAAGTTGCAGGCTGCCGAGA+TGG | 0.515486 | 2:+3495324 | MsG0280006564.01.T01:CDS |
| ATAGGGTTGAGTTGGAGGAG+AGG | 0.516403 | 2:+3495296 | MsG0280006564.01.T01:CDS |
| GGTTAGGGAGCAGACTAGAT+TGG | 0.517395 | 2:+3495372 | MsG0280006564.01.T01:CDS |
| AGATAGGAGTAGAAGGAGGA+GGG | 0.520024 | 2:-3494412 | None:intergenic |
| GACGAGCTTGTGATTCTCAA+AGG | 0.523580 | 2:+3494800 | MsG0280006564.01.T01:CDS |
| AAACCCGCTGAATCTGAATC+CGG | 0.523805 | 2:+3494443 | MsG0280006564.01.T01:CDS |
| CGGAGGAAGAGGCGGTGGGT+GGG | 0.524036 | 2:-3494214 | None:intergenic |
| GAAGGAGATGGAGAAGAAGA+AGG | 0.524202 | 2:+3494317 | MsG0280006564.01.T01:CDS |
| TCGTTGACTACTTTGTCGGC+TGG | 0.525334 | 2:-3494266 | None:intergenic |
| GTTAAATTTGATGAGGCTGC+GGG | 0.528643 | 2:+3495214 | MsG0280006564.01.T01:CDS |
| TGCTCAGCAATTGAAGAGAA+AGG | 0.529680 | 2:+3494919 | MsG0280006564.01.T01:CDS |
| TTAACTTTAGGGTTAGGAGG+TGG | 0.529972 | 2:-3494533 | None:intergenic |
| GGCTGCGGGTATAGCTGTGC+TGG | 0.534970 | 2:+3495228 | MsG0280006564.01.T01:CDS |
| GGTTAAATTTGATGAGGCTG+CGG | 0.538193 | 2:+3495213 | MsG0280006564.01.T01:CDS |
| ATCATCAGAACCACCACCAC+CGG | 0.552134 | 2:-3494699 | None:intergenic |
| CAATTGAAGAGAAAGGTTCG+TGG | 0.552666 | 2:+3494926 | MsG0280006564.01.T01:CDS |
| TTAGGGTTAGGAGGTGGAGT+GGG | 0.559530 | 2:-3494527 | None:intergenic |
| TGATGAGAATGAGGCGGAGG+AGG | 0.559810 | 2:+3494718 | MsG0280006564.01.T01:CDS |
| GATTCATCCTCAGAAGAAGA+AGG | 0.562296 | 2:+3494299 | MsG0280006564.01.T01:CDS |
| AATGCAGCTGCTTCCTTCAG+CGG | 0.564243 | 2:-3494857 | None:intergenic |
| GAGCCGGATTCAGATTCAGC+GGG | 0.569467 | 2:-3494446 | None:intergenic |
| TTTAGGGTTAGGAGGTGGAG+TGG | 0.572126 | 2:-3494528 | None:intergenic |
| AAAAGCGGTTTGGAATTGAT+GGG | 0.574547 | 2:+3495265 | MsG0280006564.01.T01:CDS |
| TGATGATGAGAATGAGGCGG+AGG | 0.577141 | 2:+3494715 | MsG0280006564.01.T01:CDS |
| TCCTCAGAAGAAGAAGGAGA+TGG | 0.578512 | 2:+3494305 | MsG0280006564.01.T01:CDS |
| TTCATGGGCTTTGAAGCAAG+TGG | 0.579960 | 2:-3494557 | None:intergenic |
| GAGGAGGATGTGAAATTGAC+TGG | 0.583042 | 2:+3494734 | MsG0280006564.01.T01:CDS |
| TCGTCGGAGGAAGAGGCGGT+GGG | 0.588753 | 2:-3494218 | None:intergenic |
| TGAAGGTGGTTGATCCTCGT+CGG | 0.589745 | 2:-3494234 | None:intergenic |
| GAAAGTGGAAAAGTGGAAAG+TGG | 0.593025 | 2:+3495160 | MsG0280006564.01.T01:CDS |
| AGCCCAAGCCCAATCAACTC+CGG | 0.593390 | 2:+3494598 | MsG0280006564.01.T01:CDS |
| ATCCTCGTCGGAGGAAGAGG+CGG | 0.601599 | 2:-3494222 | None:intergenic |
| CGTGCCGCCGAAAGTAACAC+TGG | 0.604597 | 2:+3494644 | MsG0280006564.01.T01:CDS |
| CACCGCCTCTTCCTCCGACG+AGG | 0.604984 | 2:+3494220 | MsG0280006564.01.T01:CDS |
| GACTGGAAAGGATCCGCTGA+AGG | 0.611489 | 2:+3494844 | MsG0280006564.01.T01:CDS |
| GGAAAAGTGGAAAGTGGTGT+TGG | 0.619417 | 2:+3495166 | MsG0280006564.01.T01:CDS |
| AAAGCGGTTTGGAATTGATG+GGG | 0.621162 | 2:+3495266 | MsG0280006564.01.T01:CDS |
| GTGGGTCGTCGACGAGAGCG+AGG | 0.630460 | 2:-3494196 | None:intergenic |
| TGGTTCTGATGATGAGAATG+AGG | 0.631876 | 2:+3494709 | MsG0280006564.01.T01:CDS |
| CGTTCCAAGAAGAAAACCAC+CGG | 0.642479 | 2:+3494680 | MsG0280006564.01.T01:CDS |
| GTTTCCAGTGTTACTTTCGG+CGG | 0.643844 | 2:-3494648 | None:intergenic |
| TGAGCCGGATTCAGATTCAG+CGG | 0.650032 | 2:-3494447 | None:intergenic |
| TTCAGATTCAGCGGGTTTAG+GGG | 0.652803 | 2:-3494438 | None:intergenic |
| GTAGAGATAGGAGTAGAAGG+AGG | 0.653610 | 2:-3494416 | None:intergenic |
| CGAACTGGTTAAATTTGATG+AGG | 0.653994 | 2:+3495207 | MsG0280006564.01.T01:CDS |
| ATCAGAACCACCACCACCGG+TGG | 0.666036 | 2:-3494696 | None:intergenic |
| AGGTGGTTGATCCTCGTCGG+AGG | 0.667833 | 2:-3494231 | None:intergenic |
| AAGCGGTTTGGAATTGATGG+GGG | 0.669970 | 2:+3495267 | MsG0280006564.01.T01:CDS |
| GAAGAAATCGATGAAAGCTG+AGG | 0.677405 | 2:+3494892 | MsG0280006564.01.T01:CDS |
| TCCAAGAAGAAAACCACCGG+TGG | 0.717568 | 2:+3494683 | MsG0280006564.01.T01:CDS |
| TTCTGATGATGAGAATGAGG+CGG | 0.722855 | 2:+3494712 | MsG0280006564.01.T01:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| ! | ATAGTTACTAAGAATGAAAG+TGG | + | Chr2:3495145-3495164 | MsG0280006564.01.T01:CDS | 25.0% |
| ATTCAAAAACACTTCCATCT+CGG | - | Chr2:3495341-3495360 | None:intergenic | 30.0% | |
| TAAGAATGAAAGTGGAAAAG+TGG | + | Chr2:3495153-3495172 | MsG0280006564.01.T01:CDS | 30.0% | |
| ! | AAGCAAGTGGTTTAACTTTA+GGG | - | Chr2:3494547-3494566 | None:intergenic | 30.0% |
| !! | CATTTGATCTTTTCAAGGTT+TGG | + | Chr2:3495005-3495024 | MsG0280006564.01.T01:CDS | 30.0% |
| AAGGAAGCTCCTGTTAAAAA+TGG | + | Chr2:3495097-3495116 | MsG0280006564.01.T01:CDS | 35.0% | |
| CGAACTGGTTAAATTTGATG+AGG | + | Chr2:3495207-3495226 | MsG0280006564.01.T01:CDS | 35.0% | |
| TCTAAGGAAGCTGAAGAAAA+CGG | + | Chr2:3495040-3495059 | MsG0280006564.01.T01:CDS | 35.0% | |
| TTGGAGCAAAATTGCTTCTA+AGG | + | Chr2:3495024-3495043 | MsG0280006564.01.T01:CDS | 35.0% | |
| ! | AAAAAGCGGTTTGGAATTGA+TGG | + | Chr2:3495264-3495283 | MsG0280006564.01.T01:CDS | 35.0% |
| ! | AAAAGCGGTTTGGAATTGAT+GGG | + | Chr2:3495265-3495284 | MsG0280006564.01.T01:CDS | 35.0% |
| ! | GAAGCAAGTGGTTTAACTTT+AGG | - | Chr2:3494548-3494567 | None:intergenic | 35.0% |
| ! | TTAAAAATGGTGGTTCTGCT+AGG | + | Chr2:3495110-3495129 | MsG0280006564.01.T01:CDS | 35.0% |
| ! | TTCTTCGTTGACTACTTTGT+CGG | - | Chr2:3494273-3494292 | None:intergenic | 35.0% |
| !! | AATCACTAAGAGTGCTAAGA+AGG | + | Chr2:3495078-3495097 | MsG0280006564.01.T01:CDS | 35.0% |
| !! | AGTGGTTTAACTTTAGGGTT+AGG | - | Chr2:3494542-3494561 | None:intergenic | 35.0% |
| !! | ATCGTTTCCAGTGTTACTTT+CGG | - | Chr2:3494654-3494673 | None:intergenic | 35.0% |
| !!! | GAGAGCATTTGATCTTTTCA+AGG | + | Chr2:3495000-3495019 | MsG0280006564.01.T01:CDS | 35.0% |
| AACCGAATCTGATTCTGAAC+CGG | + | Chr2:3494490-3494509 | MsG0280006564.01.T01:CDS | 40.0% | |
| ACGAGCTTGTGATTCTCAAA+GGG | + | Chr2:3494801-3494820 | MsG0280006564.01.T01:CDS | 40.0% | |
| CAATTGAAGAGAAAGGTTCG+TGG | + | Chr2:3494926-3494945 | MsG0280006564.01.T01:CDS | 40.0% | |
| GAAAGTGGAAAAGTGGAAAG+TGG | + | Chr2:3495160-3495179 | MsG0280006564.01.T01:CDS | 40.0% | |
| GAAGAAATCGATGAAAGCTG+AGG | + | Chr2:3494892-3494911 | MsG0280006564.01.T01:CDS | 40.0% | |
| GAAGCTCCTGTTAAAAATGG+TGG | + | Chr2:3495100-3495119 | MsG0280006564.01.T01:CDS | 40.0% | |
| GATAAGGATGCTGCAAAAAG+CGG | + | Chr2:3495250-3495269 | MsG0280006564.01.T01:CDS | 40.0% | |
| GATTCATCCTCAGAAGAAGA+AGG | + | Chr2:3494299-3494318 | MsG0280006564.01.T01:CDS | 40.0% | |
| GGTTAAATTTGATGAGGCTG+CGG | + | Chr2:3495213-3495232 | MsG0280006564.01.T01:CDS | 40.0% | |
| GTTAAATTTGATGAGGCTGC+GGG | + | Chr2:3495214-3495233 | MsG0280006564.01.T01:CDS | 40.0% | |
| TCTCTTCAATTGCTGAGCAT+TGG | - | Chr2:3494918-3494937 | None:intergenic | 40.0% | |
| TGCTCAGCAATTGAAGAGAA+AGG | + | Chr2:3494919-3494938 | MsG0280006564.01.T01:CDS | 40.0% | |
| TGCTCTCTTATCATGAGCTT+TGG | - | Chr2:3494987-3495006 | None:intergenic | 40.0% | |
| TTCCGGTTCAGAATCAGATT+CGG | - | Chr2:3494495-3494514 | None:intergenic | 40.0% | |
| TTCTGAACCGGAACAGAAAT+CGG | + | Chr2:3494502-3494521 | MsG0280006564.01.T01:CDS | 40.0% | |
| TTGTGATTCTCAAAGGGCTT+GGG | + | Chr2:3494807-3494826 | MsG0280006564.01.T01:CDS | 40.0% | |
| ! | AAAGCGGTTTGGAATTGATG+GGG | + | Chr2:3495266-3495285 | MsG0280006564.01.T01:CDS | 40.0% |
| ! | ATTCAGATTCAGCGGGTTTA+GGG | - | Chr2:3494442-3494461 | None:intergenic | 40.0% |
| ! | GAGTTTCATTTTGAGCGAAC+TGG | + | Chr2:3495192-3495211 | MsG0280006564.01.T01:CDS | 40.0% |
| ! | TTCTGATGATGAGAATGAGG+CGG | + | Chr2:3494712-3494731 | MsG0280006564.01.T01:CDS | 40.0% |
| !! | ACTTGGGTTTGGGTTTTCAT+GGG | - | Chr2:3494575-3494594 | None:intergenic | 40.0% |
| !! | GCAGAACCACCATTTTTAAC+AGG | - | Chr2:3495109-3495128 | None:intergenic | 40.0% |
| !! | GGTTTAACTTTAGGGTTAGG+AGG | - | Chr2:3494539-3494558 | None:intergenic | 40.0% |
| !! | TGGTTCTGATGATGAGAATG+AGG | + | Chr2:3494709-3494728 | MsG0280006564.01.T01:CDS | 40.0% |
| !! | TTAACTTTAGGGTTAGGAGG+TGG | - | Chr2:3494536-3494555 | None:intergenic | 40.0% |
| !!! | GCGGGTTTTGAATCTTTTGA+AGG | - | Chr2:3494383-3494402 | None:intergenic | 40.0% |
| !!! | TACTTTGTCGGCTGGTTTTT+GGG | - | Chr2:3494261-3494280 | None:intergenic | 40.0% |
| AAACCCGCTGAATCTGAATC+CGG | + | Chr2:3494443-3494462 | MsG0280006564.01.T01:CDS | 45.0% | |
| AAGGAAGCAGCTGCATTTCA+CGG | + | Chr2:3494863-3494882 | MsG0280006564.01.T01:CDS | 45.0% | |
| AATTGATGGGGGAGTCAGAT+AGG | + | Chr2:3495278-3495297 | MsG0280006564.01.T01:CDS | 45.0% | |
| AGATAGGAGTAGAAGGAGGA+GGG | - | Chr2:3494415-3494434 | None:intergenic | 45.0% | |
| ATTGATGGGGGAGTCAGATA+GGG | + | Chr2:3495279-3495298 | MsG0280006564.01.T01:CDS | 45.0% | |
| CGTTCCAAGAAGAAAACCAC+CGG | + | Chr2:3494680-3494699 | MsG0280006564.01.T01:CDS | 45.0% | |
| CTTGTGATTCTCAAAGGGCT+TGG | + | Chr2:3494806-3494825 | MsG0280006564.01.T01:CDS | 45.0% | |
| GAAGGAGATGGAGAAGAAGA+AGG | + | Chr2:3494317-3494336 | MsG0280006564.01.T01:CDS | 45.0% | |
| GACGAGCTTGTGATTCTCAA+AGG | + | Chr2:3494800-3494819 | MsG0280006564.01.T01:CDS | 45.0% | |
| GAGGAGGATGTGAAATTGAC+TGG | + | Chr2:3494734-3494753 | MsG0280006564.01.T01:CDS | 45.0% | |
| GGAAAAGTGGAAAGTGGTGT+TGG | + | Chr2:3495166-3495185 | MsG0280006564.01.T01:CDS | 45.0% | |
| GTAGAGATAGGAGTAGAAGG+AGG | - | Chr2:3494419-3494438 | None:intergenic | 45.0% | |
| TCCATCTCCTTCTTCTTCTG+AGG | - | Chr2:3494309-3494328 | None:intergenic | 45.0% | |
| TCCTCAGAAGAAGAAGGAGA+TGG | + | Chr2:3494305-3494324 | MsG0280006564.01.T01:CDS | 45.0% | |
| TGTGATTCTCAAAGGGCTTG+GGG | + | Chr2:3494808-3494827 | MsG0280006564.01.T01:CDS | 45.0% | |
| TTCGGTTCCAGATTCAGAAC+CGG | - | Chr2:3494477-3494496 | None:intergenic | 45.0% | |
| ! | AAATGGTGGTTCTGCTAGGA+AGG | + | Chr2:3495114-3495133 | MsG0280006564.01.T01:CDS | 45.0% |
| ! | AAGCGGTTTGGAATTGATGG+GGG | + | Chr2:3495267-3495286 | MsG0280006564.01.T01:CDS | 45.0% |
| ! | AGTAGAAGGAGGAGGGTTTT+TGG | - | Chr2:3494408-3494427 | None:intergenic | 45.0% |
| ! | GATTCAGATTCAGCGGGTTT+AGG | - | Chr2:3494443-3494462 | None:intergenic | 45.0% |
| ! | TTCAGATTCAGCGGGTTTAG+GGG | - | Chr2:3494441-3494460 | None:intergenic | 45.0% |
| ! | TTTTGTGGCGAAGACTGGAA+AGG | + | Chr2:3494832-3494851 | MsG0280006564.01.T01:CDS | 45.0% |
| !! | AGTGTTTTTGAATCGCGCTG+AGG | + | Chr2:3495348-3495367 | MsG0280006564.01.T01:CDS | 45.0% |
| !! | GACTTGGGTTTGGGTTTTCA+TGG | - | Chr2:3494576-3494595 | None:intergenic | 45.0% |
| !! | GTTTCCAGTGTTACTTTCGG+CGG | - | Chr2:3494651-3494670 | None:intergenic | 45.0% |
| !! | TCAGAATCCGGTTCTGAATC+TGG | + | Chr2:3494467-3494486 | MsG0280006564.01.T01:CDS | 45.0% |
| !! | TTCATGGGCTTTGAAGCAAG+TGG | - | Chr2:3494560-3494579 | None:intergenic | 45.0% |
| !!! | CTACTTTGTCGGCTGGTTTT+TGG | - | Chr2:3494262-3494281 | None:intergenic | 45.0% |
| AAGAAGAAAACCACCGGTGG+TGG | + | Chr2:3494686-3494705 | MsG0280006564.01.T01:CDS | 50.0% | |
| AATGCAGCTGCTTCCTTCAG+CGG | - | Chr2:3494860-3494879 | None:intergenic | 50.0% | |
| ATCATCAGAACCACCACCAC+CGG | - | Chr2:3494702-3494721 | None:intergenic | 50.0% | |
| GAGATAGGAGTAGAAGGAGG+AGG | - | Chr2:3494416-3494435 | None:intergenic | 50.0% | |
| GCAGACTAGATTGGCATTGC+AGG | + | Chr2:3495381-3495400 | MsG0280006564.01.T01:CDS | 50.0% | |
| GGAGTCAGATAGGGTTGAGT+TGG | + | Chr2:3495288-3495307 | MsG0280006564.01.T01:CDS | 50.0% | |
| GGATGCTGCAAAAAGCGGTT+TGG | + | Chr2:3495255-3495274 | MsG0280006564.01.T01:CDS | 50.0% | |
| GGGGTAGAGATAGGAGTAGA+AGG | - | Chr2:3494422-3494441 | None:intergenic | 50.0% | |
| GGGTATAGCTGTGCTGGATA+AGG | + | Chr2:3495234-3495253 | MsG0280006564.01.T01:CDS | 50.0% | |
| GGTTAGGGAGCAGACTAGAT+TGG | + | Chr2:3495372-3495391 | MsG0280006564.01.T01:CDS | 50.0% | |
| GTGGGTTCCGATTTCTGTTC+CGG | - | Chr2:3494512-3494531 | None:intergenic | 50.0% | |
| TCCAAGAAGAAAACCACCGG+TGG | + | Chr2:3494683-3494702 | MsG0280006564.01.T01:CDS | 50.0% | |
| TCTGAATCCGGCTCAGAATC+CGG | + | Chr2:3494455-3494474 | MsG0280006564.01.T01:CDS | 50.0% | |
| TGAAGGTGGTTGATCCTCGT+CGG | - | Chr2:3494237-3494256 | None:intergenic | 50.0% | |
| TGAGCCGGATTCAGATTCAG+CGG | - | Chr2:3494450-3494469 | None:intergenic | 50.0% | |
| TTAGGGTTAGGAGGTGGAGT+GGG | - | Chr2:3494530-3494549 | None:intergenic | 50.0% | |
| TTCAGAACCGGATTCTGAGC+CGG | - | Chr2:3494465-3494484 | None:intergenic | 50.0% | |
| TTGGGCTTGGACTTGGGTTT+GGG | - | Chr2:3494585-3494604 | None:intergenic | 50.0% | |
| ! | ACCACCGGTGGTTTTCTTCT+TGG | - | Chr2:3494687-3494706 | None:intergenic | 50.0% |
| ! | CAAAGGGCTTGGGGATTTTG+TGG | + | Chr2:3494817-3494836 | MsG0280006564.01.T01:CDS | 50.0% |
| ! | GTTTTTGAATCGCGCTGAGG+TGG | + | Chr2:3495351-3495370 | MsG0280006564.01.T01:CDS | 50.0% |
| ! | TCGTTGACTACTTTGTCGGC+TGG | - | Chr2:3494269-3494288 | None:intergenic | 50.0% |
| ! | TGATGATGAGAATGAGGCGG+AGG | + | Chr2:3494715-3494734 | MsG0280006564.01.T01:CDS | 50.0% |
| ! | TTTAGGGTTAGGAGGTGGAG+TGG | - | Chr2:3494531-3494550 | None:intergenic | 50.0% |
| !! | AGGAGGAGGGTTTTTGGAAG+CGG | - | Chr2:3494402-3494421 | None:intergenic | 50.0% |
| !! | ATAGGGTTGAGTTGGAGGAG+AGG | + | Chr2:3495296-3495315 | MsG0280006564.01.T01:CDS | 50.0% |
| !! | GTCAGATAGGGTTGAGTTGG+AGG | + | Chr2:3495291-3495310 | MsG0280006564.01.T01:CDS | 50.0% |
| !!! | GCTGGTTTTTGGGTTGAAGG+TGG | - | Chr2:3494251-3494270 | None:intergenic | 50.0% |
| !!! | TCGGCTGGTTTTTGGGTTGA+AGG | - | Chr2:3494254-3494273 | None:intergenic | 50.0% |
| AGCCCAAGCCCAATCAACTC+CGG | + | Chr2:3494598-3494617 | MsG0280006564.01.T01:CDS | 55.0% | |
| ATTGGGCTTGGGCTTGGACT+TGG | - | Chr2:3494592-3494611 | None:intergenic | 55.0% | |
| CTTGGGCTTGGACTTGGGTT+TGG | - | Chr2:3494586-3494605 | None:intergenic | 55.0% | |
| GAATCGCGCTGAGGTGGTTA+GGG | + | Chr2:3495357-3495376 | MsG0280006564.01.T01:CDS | 55.0% | |
| GACTGGAAAGGATCCGCTGA+AGG | + | Chr2:3494844-3494863 | MsG0280006564.01.T01:CDS | 55.0% | |
| GAGCCGGATTCAGATTCAGC+GGG | - | Chr2:3494449-3494468 | None:intergenic | 55.0% | |
| GCGGGTTTAGGGGTAGAGAT+AGG | - | Chr2:3494431-3494450 | None:intergenic | 55.0% | |
| GGAGAGGTGGAAGAAGTTGC+AGG | + | Chr2:3495312-3495331 | MsG0280006564.01.T01:CDS | 55.0% | |
| TGAATCGCGCTGAGGTGGTT+AGG | + | Chr2:3495356-3495375 | MsG0280006564.01.T01:CDS | 55.0% | |
| TGATGAGAATGAGGCGGAGG+AGG | + | Chr2:3494718-3494737 | MsG0280006564.01.T01:CDS | 55.0% | |
| TTGATCCTCGTCGGAGGAAG+AGG | - | Chr2:3494228-3494247 | None:intergenic | 55.0% | |
| TTGGGCTTGGGCTTGGACTT+GGG | - | Chr2:3494591-3494610 | None:intergenic | 55.0% | |
| ! | AAGAAAACCACCGGTGGTGG+TGG | + | Chr2:3494689-3494708 | MsG0280006564.01.T01:CDS | 55.0% |
| ! | ACGAGAGCGAGGCGTTTCTT+TGG | - | Chr2:3494188-3494207 | None:intergenic | 55.0% |
| ! | CACCGGAGTTGATTGGGCTT+GGG | - | Chr2:3494603-3494622 | None:intergenic | 55.0% |
| ! | CGCTTAGTTCCGGACTTGGT+CGG | - | Chr2:3494626-3494645 | None:intergenic | 55.0% |
| ! | GAGTTGATTGGGCTTGGGCT+TGG | - | Chr2:3494598-3494617 | None:intergenic | 55.0% |
| ! | GCGAGGCGTTTCTTTGGCTT+TGG | - | Chr2:3494182-3494201 | None:intergenic | 55.0% |
| ! | GGGGATTTTGTGGCGAAGAC+TGG | + | Chr2:3494827-3494846 | MsG0280006564.01.T01:CDS | 55.0% |
| !! | GGAGGAGGGTTTTTGGAAGC+GGG | - | Chr2:3494401-3494420 | None:intergenic | 55.0% |
| AGGTGGTTGATCCTCGTCGG+AGG | - | Chr2:3494234-3494253 | None:intergenic | 60.0% | |
| ATCAGAACCACCACCACCGG+TGG | - | Chr2:3494699-3494718 | None:intergenic | 60.0% | |
| ATCCTCGTCGGAGGAAGAGG+CGG | - | Chr2:3494225-3494244 | None:intergenic | 60.0% | |
| CGTGCCGCCGAAAGTAACAC+TGG | + | Chr2:3494644-3494663 | MsG0280006564.01.T01:CDS | 60.0% | |
| GAAGTTGCAGGCTGCCGAGA+TGG | + | Chr2:3495324-3495343 | MsG0280006564.01.T01:CDS | 60.0% | |
| GGCACGCTTAGTTCCGGACT+TGG | - | Chr2:3494630-3494649 | None:intergenic | 60.0% | |
| TTCGGCGGCACGCTTAGTTC+CGG | - | Chr2:3494636-3494655 | None:intergenic | 60.0% | |
| ! | GCACCGGAGTTGATTGGGCT+TGG | - | Chr2:3494604-3494623 | None:intergenic | 60.0% |
| ! | GGTCGGCACCGGAGTTGATT+GGG | - | Chr2:3494609-3494628 | None:intergenic | 60.0% |
| ! | TGGTCGGCACCGGAGTTGAT+TGG | - | Chr2:3494610-3494629 | None:intergenic | 60.0% |
| !! | GGGTTGAGTTGGAGGAGAGG+TGG | + | Chr2:3495299-3495318 | MsG0280006564.01.T01:CDS | 60.0% |
| GGCTGCGGGTATAGCTGTGC+TGG | + | Chr2:3495228-3495247 | MsG0280006564.01.T01:CDS | 65.0% | |
| TCGTCGGAGGAAGAGGCGGT+GGG | - | Chr2:3494221-3494240 | None:intergenic | 65.0% | |
| ! | GTTCCGGACTTGGTCGGCAC+CGG | - | Chr2:3494620-3494639 | None:intergenic | 65.0% |
| !! | ACTCCGGTGCCGACCAAGTC+CGG | + | Chr2:3494614-3494633 | MsG0280006564.01.T01:CDS | 65.0% |
| CACCGCCTCTTCCTCCGACG+AGG | + | Chr2:3494220-3494239 | MsG0280006564.01.T01:CDS | 70.0% | |
| CGGAGGAAGAGGCGGTGGGT+GGG | - | Chr2:3494217-3494236 | None:intergenic | 70.0% | |
| CTCGTCGGAGGAAGAGGCGG+TGG | - | Chr2:3494222-3494241 | None:intergenic | 70.0% | |
| GTGGGTCGTCGACGAGAGCG+AGG | - | Chr2:3494199-3494218 | None:intergenic | 70.0% | |
| TCGGAGGAAGAGGCGGTGGG+TGG | - | Chr2:3494218-3494237 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| Chr2 | gene | 3494173 | 3495429 | 3494173 | ID=MsG0280006564.01;Name=MsG0280006564.01 |
| Chr2 | mRNA | 3494173 | 3495429 | 3494173 | ID=MsG0280006564.01.T01;Parent=MsG0280006564.01;Name=MsG0280006564.01.T01;_AED=0.14;_eAED=0.14;_QI=0|-1|0|1|-1|1|1|0|418 |
| Chr2 | exon | 3494173 | 3495429 | 3494173 | ID=MsG0280006564.01.T01:exon:744;Parent=MsG0280006564.01.T01 |
| Chr2 | CDS | 3494173 | 3495429 | 3494173 | ID=MsG0280006564.01.T01:cds;Parent=MsG0280006564.01.T01 |
| Gene Sequence |
| Protein sequence |
