AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0280006663.01

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0280006663.01.T01 MTR_2g012420 83.117 385 5 2 17 401 1 325 0.0 620
MsG0280006663.01.T01 MTR_4g050760 79.740 385 18 2 17 401 1 325 0.0 587
MsG0280006663.01.T01 MTR_2g012380 79.740 385 18 2 17 401 1 325 0.0 587
MsG0280006663.01.T01 MTR_2g012380 75.389 321 19 2 17 337 1 261 2.52e-162 457
MsG0280006663.01.T01 MTR_4g050710 78.689 305 5 2 97 401 4 248 4.52e-162 455
MsG0280006663.01.T01 MTR_2g012420 78.689 305 5 2 97 401 10 254 9.10e-162 454
MsG0280006663.01.T01 MTR_2g012420 75.889 253 1 2 149 401 1 193 8.31e-125 358
MsG0280006663.01.T01 MTR_2g012390 85.507 69 10 0 98 166 5 73 6.29e-32 116
MsG0280006663.01.T01 MTR_4g029500 28.756 386 209 9 17 400 52 373 3.09e-30 120
MsG0280006663.01.T01 MTR_8g064610 25.750 400 189 14 15 399 74 380 3.68e-18 85.9
MsG0280006663.01.T01 MTR_3g093620 24.372 398 225 9 17 400 1 336 1.15e-14 75.1
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0280006663.01.T01 AT4G21580 63.969 383 78 2 17 399 1 323 1.25e-168 475
MsG0280006663.01.T01 AT4G21580 62.663 383 77 3 17 399 1 317 4.25e-162 458
MsG0280006663.01.T01 AT4G21580 61.143 350 76 2 50 399 1 290 8.56e-144 410
MsG0280006663.01.T01 AT5G61510 27.062 388 213 7 17 400 84 405 3.40e-26 109
MsG0280006663.01.T01 AT5G61510 26.667 375 205 7 30 400 40 348 9.38e-24 101
MsG0280006663.01.T01 AT3G56460 22.798 386 225 10 23 399 15 336 3.08e-16 79.7
MsG0280006663.01.T01 AT1G49670 27.240 279 156 7 41 315 314 549 5.56e-14 74.3

Find 97 sgRNAs with CRISPR-Local

Find 220 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AACGTTTCCAAGTGGAAAAT+TGG 0.220666 2:-4654875 MsG0280006663.01.T01:CDS
GTGGATCTACGTGCTTTATT+TGG 0.241490 2:-4652947 MsG0280006663.01.T01:CDS
TTCTTTCCGAACATGGTTAT+TGG 0.262807 2:-4653680 MsG0280006663.01.T01:CDS
TATGACAAGCCGGCTATCTA+AGG 0.300012 2:-4653774 MsG0280006663.01.T01:CDS
TTTATTAATTCTCAGATTCA+TGG 0.307719 2:-4653549 MsG0280006663.01.T01:intron
ACCTTACCTTCTGCAATTGC+AGG 0.310584 2:+4651953 None:intergenic
TCTTGGAGTTGAAGAACTTC+AGG 0.328052 2:+4655064 None:intergenic
ACGTTTCCAAGTGGAAAATT+GGG 0.345313 2:-4654874 MsG0280006663.01.T01:CDS
TGATGTTATTCTTGATTGTA+TGG 0.350274 2:-4653059 MsG0280006663.01.T01:CDS
TATCCAGGACTTGAATGTTC+TGG 0.367607 2:-4654920 MsG0280006663.01.T01:CDS
TCTTTCCGAACATGGTTATT+GGG 0.369573 2:-4653679 MsG0280006663.01.T01:CDS
GAAGGGTATCAGCTCTGTTA+AGG 0.372125 2:+4654984 None:intergenic
ACATGCAACCTCAGGAAAAC+TGG 0.374246 2:+4653817 None:intergenic
TGCGGAGGCTCACCGGCTTA+TGG 0.376154 2:-4651891 MsG0280006663.01.T01:CDS
CTTCATCGTCTTTGATTTGA+GGG 0.391499 2:+4655032 None:intergenic
TTTGAGGGTCTTCAACCTCT+TGG 0.395986 2:+4655047 None:intergenic
CAAGTTCTTCCGGTTCCACC+TGG 0.396015 2:-4653860 MsG0280006663.01.T01:CDS
ACTTCATCGTCTTTGATTTG+AGG 0.409397 2:+4655031 None:intergenic
AGCAAGATTTCTTTGATAGT+AGG 0.419299 2:+4653030 None:intergenic
CAGGTATGTGCTCTTCTAGC+TGG 0.420815 2:-4653920 MsG0280006663.01.T01:CDS
CAAGTGGAAAATTGGGGATC+AGG 0.422179 2:-4654867 MsG0280006663.01.T01:intron
AGAGAAATCCCAGGTGGAAC+CGG 0.432518 2:+4653851 None:intergenic
AAATACCCAATAACCATGTT+CGG 0.461425 2:+4653674 None:intergenic
GCCTGCAATTGCAGAAGGTA+AGG 0.466263 2:-4651954 MsG0280006663.01.T01:CDS
CTGAAGTGGAGAAGAATGTT+TGG 0.467969 2:-4651976 MsG0280006663.01.T01:CDS
ATGGAAAGCAGTCAGCATAT+TGG 0.471076 2:-4651872 MsG0280006663.01.T01:CDS
AAGGGTATCAGCTCTGTTAA+GGG 0.477227 2:+4654985 None:intergenic
CTGAAGCTGCGGAGGCTCAC+CGG 0.480756 2:-4651898 MsG0280006663.01.T01:CDS
AGGTTTCTCCCTTAGATAGC+CGG 0.480837 2:+4653765 None:intergenic
CATGGAGGTTCAAGTGGAAT+CGG 0.482880 2:-4653531 MsG0280006663.01.T01:CDS
ATCAGCTCTGTTAAGGGCAG+TGG 0.483074 2:+4654991 None:intergenic
AGCCTCCGCAGCTTCAGAAA+GGG 0.487747 2:+4651904 None:intergenic
TCAAGAGTATTTGTTACTGC+AGG 0.488629 2:-4653474 MsG0280006663.01.T01:intron
GCAAGGGTAAAGGAAGAAAC+TGG 0.488723 2:-4653233 MsG0280006663.01.T01:CDS
GATAGGGGCTAGCACCTTGA+GGG 0.489307 2:+4654939 None:intergenic
GGATAGGGGCTAGCACCTTG+AGG 0.495024 2:+4654938 None:intergenic
TCCACCTGGGATTTCTCTGA+AGG 0.503186 2:-4653846 MsG0280006663.01.T01:CDS
GAGCCTCCGCAGCTTCAGAA+AGG 0.504076 2:+4651903 None:intergenic
GAACATTCAAGTCCTGGATA+GGG 0.505561 2:+4654923 None:intergenic
TAATCTGTTCTTTCCGAACA+TGG 0.506113 2:-4653687 MsG0280006663.01.T01:CDS
AGAACATTCAAGTCCTGGAT+AGG 0.510975 2:+4654922 None:intergenic
ATTCCAGAACATTCAAGTCC+TGG 0.512015 2:+4654917 None:intergenic
TAACAAATACTCTTGATCCT+AGG 0.513854 2:+4653481 None:intergenic
ATCTAAGGGAGAAACCTTGT+TGG 0.517870 2:-4653759 MsG0280006663.01.T01:CDS
GGACTTTGTAGCAAGGGTAA+AGG 0.520598 2:-4653243 MsG0280006663.01.T01:CDS
GGGAAAGATTTGTAGACCAC+AGG 0.522474 2:+4651926 None:intergenic
TTGGTTGCTTAGAGATGCAT+CGG 0.523510 2:-4653113 MsG0280006663.01.T01:intron
TGTGCTCTTCTAGCTGGAGG+TGG 0.523769 2:-4653914 MsG0280006663.01.T01:CDS
CAAGGTGCTAGCCCCTATCC+AGG 0.525316 2:-4654935 MsG0280006663.01.T01:CDS
GGCAAGCGTCTCACTGTACA+AGG 0.526294 2:-4652926 MsG0280006663.01.T01:intron
GTTATCATTGACGTGGTGGC+AGG 0.528018 2:-4653085 MsG0280006663.01.T01:CDS
CAGATTCATGGAGGTTCAAG+TGG 0.533168 2:-4653537 MsG0280006663.01.T01:CDS
GATGTTATTCTTGATTGTAT+GGG 0.533185 2:-4653058 MsG0280006663.01.T01:CDS
TAGGGGCTAGCACCTTGAGG+GGG 0.534054 2:+4654941 None:intergenic
TTAGTGTGAGAGAGAAGAGA+AGG 0.542193 2:-4655149 None:intergenic
AGAGAAGAGAAGGAAAGTTG+TGG 0.543155 2:-4655139 MsG0280006663.01.T01:CDS
TCTGGAATCATTGAATCCGT+TGG 0.550779 2:-4654902 MsG0280006663.01.T01:CDS
GCTGACTGCTTTCCATAAGC+CGG 0.555663 2:+4651879 None:intergenic
AACAGAGGACTTTGTAGCAA+GGG 0.557510 2:-4653249 MsG0280006663.01.T01:CDS
ATGACAAGCCGGCTATCTAA+GGG 0.558435 2:-4653773 MsG0280006663.01.T01:CDS
AAGGAAGAAACTGGCGGACA+AGG 0.566694 2:-4653224 MsG0280006663.01.T01:CDS
TGAAGAACTTCAGGTTCACC+TGG 0.571691 2:+4655073 None:intergenic
AATTCACATCATGTTCACAT+AGG 0.574349 2:+4653196 None:intergenic
CACACAGTACATGCAACCTC+AGG 0.575176 2:+4653809 None:intergenic
AGCTGTGATCGTTGCTGAAG+TGG 0.584468 2:-4651990 MsG0280006663.01.T01:CDS
GTATGTGCTCTTCTAGCTGG+AGG 0.586099 2:-4653917 MsG0280006663.01.T01:CDS
GATAAGCGCCTTTCCTCTGA+AGG 0.586526 2:+4654966 None:intergenic
GTTTGGCCTGCAATTGCAGA+AGG 0.586800 2:-4651959 MsG0280006663.01.T01:CDS
AACATTCAAGTCCTGGATAG+GGG 0.587904 2:+4654924 None:intergenic
CGTTTCCAAGTGGAAAATTG+GGG 0.591119 2:-4654873 MsG0280006663.01.T01:CDS
AAGAGTATTGGAGCTGATGT+TGG 0.603468 2:-4653284 MsG0280006663.01.T01:CDS
TGAAGTTCTTCAACTCCAAG+AGG 0.603773 2:-4655062 MsG0280006663.01.T01:CDS
GCCTCCGCAGCTTCAGAAAG+GGG 0.606587 2:+4651905 None:intergenic
ATACAGTGAGATCAAAAGCA+TGG 0.608663 2:+4653636 None:intergenic
TATTGGAAAGATATTGCTTG+TGG 0.612988 2:-4651855 MsG0280006663.01.T01:CDS
GCTGATACCCTTCAGAGGAA+AGG 0.613277 2:-4654974 MsG0280006663.01.T01:CDS
AAGTTCTTCCGGTTCCACCT+GGG 0.613353 2:-4653859 MsG0280006663.01.T01:CDS
TGGTTGCTTAGAGATGCATC+GGG 0.617950 2:-4653112 MsG0280006663.01.T01:intron
ATTCAGATAGCTAAGTACCT+AGG 0.626422 2:-4653498 MsG0280006663.01.T01:CDS
AAACAGAGGACTTTGTAGCA+AGG 0.639577 2:-4653250 MsG0280006663.01.T01:CDS
GCATCCTTCAGAGAAATCCC+AGG 0.642275 2:+4653842 None:intergenic
TTTATTATCGGCTTTCAAGG+GGG 0.643203 2:-4652983 MsG0280006663.01.T01:CDS
CCTCCGCAGCTTCAGAAAGG+GGG 0.648637 2:+4651906 None:intergenic
TAATGTTATCATTGACGTGG+TGG 0.650028 2:-4653089 MsG0280006663.01.T01:CDS
ATAGGGGCTAGCACCTTGAG+GGG 0.651548 2:+4654940 None:intergenic
ACAGAGCTGATACCCTTCAG+AGG 0.655552 2:-4654979 MsG0280006663.01.T01:CDS
ATTAATTCTCAGATTCATGG+AGG 0.663589 2:-4653546 MsG0280006663.01.T01:intron
ATAAGCGCCTTTCCTCTGAA+GGG 0.666916 2:+4654967 None:intergenic
AGAAGGTAAGGTTAAGCCTG+TGG 0.670093 2:-4651942 MsG0280006663.01.T01:CDS
CAGTGGCGTGAACTTTGATG+AGG 0.672273 2:+4655008 None:intergenic
GCAATTGTAATAACAACACC+AGG 0.678910 2:-4655091 MsG0280006663.01.T01:CDS
CTGAGGTTGCATGTACTGTG+TGG 0.679898 2:-4653808 MsG0280006663.01.T01:CDS
AATCATACGACTTACCAACA+AGG 0.697741 2:+4653745 None:intergenic
TCCTTCAGAGAAATCCCAGG+TGG 0.700414 2:+4653845 None:intergenic
GGGTAATGTTATCATTGACG+TGG 0.710152 2:-4653092 MsG0280006663.01.T01:CDS
TGGTATCAATTACAAAACAG+AGG 0.714141 2:-4653264 MsG0280006663.01.T01:CDS
AGGGTAAAGGAAGAAACTGG+CGG 0.742355 2:-4653230 MsG0280006663.01.T01:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TAATTACTAATATTTAAGAA+AGG + Chr2:4654705-4654724 None:intergenic 10.0%
!! TTCAAAAATAATGAAATTAA+TGG + Chr2:4652223-4652242 None:intergenic 10.0%
!!! TTTTTAGTTATATAATATCT+AGG - Chr2:4652298-4652317 MsG0280006663.01.T01:intron 10.0%
!! AAATCAATAATTCAAATCAA+AGG + Chr2:4652339-4652358 None:intergenic 15.0%
!! CAAAAAAAAAAAACGATTTA+TGG + Chr2:4652170-4652189 None:intergenic 15.0%
!! CTTAATTATTAGTAAACATT+AGG - Chr2:4652361-4652380 MsG0280006663.01.T01:intron 15.0%
!!! AATTTCATTATTTTTGAAGT+GGG - Chr2:4652225-4652244 MsG0280006663.01.T01:intron 15.0%
!!! TAATTTCATTATTTTTGAAG+TGG - Chr2:4652224-4652243 MsG0280006663.01.T01:intron 15.0%
!!! TATTTTGAAAATTGAATTGT+GGG - Chr2:4652255-4652274 MsG0280006663.01.T01:intron 15.0%
!!! TTAAAAATAAGTTTTGTATG+AGG - Chr2:4654839-4654858 MsG0280006663.01.T01:intron 15.0%
!!! TTATTTTGAAAATTGAATTG+TGG - Chr2:4652254-4652273 MsG0280006663.01.T01:intron 15.0%
!! AGTTTATGAAATTTCACTTA+AGG - Chr2:4654275-4654294 MsG0280006663.01.T01:intron 20.0%
!! ATATGTATACTCTTAAGAAT+TGG + Chr2:4654638-4654657 None:intergenic 20.0%
!! ATTCTTTAATATTCAACTGT+GGG - Chr2:4654938-4654957 MsG0280006663.01.T01:CDS 20.0%
!! GTTGAATATTAAAGAATGAT+AGG + Chr2:4654935-4654954 None:intergenic 20.0%
!! TTTATTAATTCTCAGATTCA+TGG - Chr2:4653446-4653465 MsG0280006663.01.T01:intron 20.0%
! AAGTTAATACGTCAACTATT+AGG + Chr2:4653428-4653447 None:intergenic 25.0%
! AATCAAAGCAACAAAAATGA+AGG - Chr2:4651882-4651901 MsG0280006663.01.T01:CDS 25.0%
! ACCAAATAATAAAATAACCC+AGG + Chr2:4653394-4653413 None:intergenic 25.0%
! ATGAAATTTCACTTAAGGTT+GGG - Chr2:4654280-4654299 MsG0280006663.01.T01:intron 25.0%
! CATTCTTTAATATTCAACTG+TGG - Chr2:4654937-4654956 MsG0280006663.01.T01:CDS 25.0%
! CTATAGATCATATAATGTTG+CGG + Chr2:4653834-4653853 None:intergenic 25.0%
! GATGTTATTCTTGATTGTAT+GGG - Chr2:4653937-4653956 MsG0280006663.01.T01:intron 25.0%
! GCAAAACAAAATTTGTAAGT+TGG + Chr2:4654340-4654359 None:intergenic 25.0%
! TATGAAATTTCACTTAAGGT+TGG - Chr2:4654279-4654298 MsG0280006663.01.T01:intron 25.0%
! TATTCTAGATATTGCTAAAC+AGG - Chr2:4653663-4653682 MsG0280006663.01.T01:CDS 25.0%
! TCAGATAAGTTAATACAAAC+AGG - Chr2:4652661-4652680 MsG0280006663.01.T01:intron 25.0%
! TCGTTTACATTTATAATCAC+TGG + Chr2:4652706-4652725 None:intergenic 25.0%
! TGAATGGATATTATGATATG+AGG - Chr2:4653040-4653059 MsG0280006663.01.T01:CDS 25.0%
! TGATGTTATTCTTGATTGTA+TGG - Chr2:4653936-4653955 MsG0280006663.01.T01:intron 25.0%
!! TACTTGTTAGTAATGTTAGT+GGG - Chr2:4654730-4654749 MsG0280006663.01.T01:intron 25.0%
!! TTACTTGTTAGTAATGTTAG+TGG - Chr2:4654729-4654748 MsG0280006663.01.T01:intron 25.0%
!! TTCTTTTATTAGTGTGGTTA+TGG - Chr2:4654903-4654922 MsG0280006663.01.T01:CDS 25.0%
!!! ATCATGCAATGTATTGATTA+TGG - Chr2:4654443-4654462 MsG0280006663.01.T01:intron 25.0%
!!! CTGTATCTTTGTTTTCTAAT+TGG - Chr2:4653863-4653882 MsG0280006663.01.T01:CDS 25.0%
!!! GTATTGATTATGGCTATATA+GGG - Chr2:4654453-4654472 MsG0280006663.01.T01:intron 25.0%
!!! TCCTGGGTTATTTTATTATT+TGG - Chr2:4653390-4653409 MsG0280006663.01.T01:intron 25.0%
!!! TGGATTTTAACTTCGAATTA+TGG + Chr2:4652203-4652222 None:intergenic 25.0%
!!! TGTATTGATTATGGCTATAT+AGG - Chr2:4654452-4654471 MsG0280006663.01.T01:intron 25.0%
!!! TTTTTATTATCGGCTTTCAA+GGG - Chr2:4654010-4654029 MsG0280006663.01.T01:intron 25.0%
AAATACCCAATAACCATGTT+CGG + Chr2:4653324-4653343 None:intergenic 30.0%
AAATTACTAATGTCAGTGAC+AGG + Chr2:4654241-4654260 None:intergenic 30.0%
AATTCACATCATGTTCACAT+AGG + Chr2:4653802-4653821 None:intergenic 30.0%
AATTTGAAGATACGAGAAAC+TGG + Chr2:4653620-4653639 None:intergenic 30.0%
AGAAACTAAATTCTTGTGTC+AGG - Chr2:4654539-4654558 MsG0280006663.01.T01:intron 30.0%
AGTGAGTATCTACTAGAAAA+GGG + Chr2:4654116-4654135 None:intergenic 30.0%
ATATTATGATATGAGGTGTG+TGG - Chr2:4653047-4653066 MsG0280006663.01.T01:CDS 30.0%
ATCTTTCTTGACATTTGCAT+CGG - Chr2:4654378-4654397 MsG0280006663.01.T01:intron 30.0%
ATTAATTCTCAGATTCATGG+AGG - Chr2:4653449-4653468 MsG0280006663.01.T01:intron 30.0%
CAGTTTCATGTCTAAACATA+CGG + Chr2:4653588-4653607 None:intergenic 30.0%
CTACAAGCACTAAATTAAGT+TGG + Chr2:4652744-4652763 None:intergenic 30.0%
TAACAAATACTCTTGATCCT+AGG + Chr2:4653517-4653536 None:intergenic 30.0%
TAGAAAACAAAGATACAGAG+CGG + Chr2:4653861-4653880 None:intergenic 30.0%
TATTGGAAAGATATTGCTTG+TGG - Chr2:4655140-4655159 MsG0280006663.01.T01:CDS 30.0%
TGGTATCAATTACAAAACAG+AGG - Chr2:4653731-4653750 MsG0280006663.01.T01:CDS 30.0%
TTTGATAAGTTATCCTAGAG+AGG - Chr2:4652533-4652552 MsG0280006663.01.T01:intron 30.0%
! ACTTGTTAGTAATGTTAGTG+GGG - Chr2:4654731-4654750 MsG0280006663.01.T01:intron 30.0%
! AGCAAGATTTCTTTGATAGT+AGG + Chr2:4653968-4653987 None:intergenic 30.0%
! AGCTTTTCCACTATTGAAAT+GGG - Chr2:4654877-4654896 MsG0280006663.01.T01:CDS 30.0%
! ATTTAGTTTCTTTGCATGTC+AGG + Chr2:4654530-4654549 None:intergenic 30.0%
! GATGGAAGGCTTTTTATTAT+CGG - Chr2:4654000-4654019 MsG0280006663.01.T01:intron 30.0%
! TAGCTTTTCCACTATTGAAA+TGG - Chr2:4654876-4654895 MsG0280006663.01.T01:CDS 30.0%
! TGTAATCAGTTCATCTTTTC+AGG - Chr2:4653272-4653291 MsG0280006663.01.T01:CDS 30.0%
!! CTAGCTTAAATTTTGATGGA+AGG - Chr2:4653986-4654005 MsG0280006663.01.T01:intron 30.0%
!! CTTGCTAGCTTAAATTTTGA+TGG - Chr2:4653982-4654001 MsG0280006663.01.T01:intron 30.0%
!! TCTGTAGACACATCATTTTT+AGG - Chr2:4654795-4654814 MsG0280006663.01.T01:intron 30.0%
!!! CAACTATTTTTATGACAAGC+CGG - Chr2:4653211-4653230 MsG0280006663.01.T01:CDS 30.0%
!!! CTTTTTATTATCGGCTTTCA+AGG - Chr2:4654009-4654028 MsG0280006663.01.T01:intron 30.0%
!!! GCTGTTTTTATAAGCTATCT+TGG - Chr2:4652832-4652851 MsG0280006663.01.T01:intron 30.0%
!!! TTTTATTATCGGCTTTCAAG+GGG - Chr2:4654011-4654030 MsG0280006663.01.T01:intron 30.0%
AAATTTCACTTAAGGTTGGG+TGG - Chr2:4654283-4654302 MsG0280006663.01.T01:intron 35.0%
AACGTTTCCAAGTGGAAAAT+TGG - Chr2:4652120-4652139 MsG0280006663.01.T01:intron 35.0%
AATCATACGACTTACCAACA+AGG + Chr2:4653253-4653272 None:intergenic 35.0%
ACGTTTCCAAGTGGAAAATT+GGG - Chr2:4652121-4652140 MsG0280006663.01.T01:intron 35.0%
AGAACTTCCCATTTCAATAG+TGG + Chr2:4654887-4654906 None:intergenic 35.0%
AGAAGAGATAAGGTGATTTG+CGG + Chr2:4654778-4654797 None:intergenic 35.0%
ATACAGTGAGATCAAAAGCA+TGG + Chr2:4653362-4653381 None:intergenic 35.0%
ATATAATGTTGCGGAATGCT+TGG + Chr2:4653825-4653844 None:intergenic 35.0%
ATGTGTCTACAGAAGAGATA+AGG + Chr2:4654788-4654807 None:intergenic 35.0%
ATTCAGATAGCTAAGTACCT+AGG - Chr2:4653497-4653516 MsG0280006663.01.T01:CDS 35.0%
CAAACACTTGTGGAACTATT+TGG + Chr2:4652954-4652973 None:intergenic 35.0%
CATGACAAACAGTCACATAA+CGG + Chr2:4653014-4653033 None:intergenic 35.0%
CATGCAGAAAACTAAACTTG+AGG + Chr2:4654142-4654161 None:intergenic 35.0%
CGTATGTTTAGACATGAAAC+TGG - Chr2:4653586-4653605 MsG0280006663.01.T01:intron 35.0%
CTGGACAACAAACTTACATA+AGG + Chr2:4652687-4652706 None:intergenic 35.0%
GAGTGAGTATCTACTAGAAA+AGG + Chr2:4654117-4654136 None:intergenic 35.0%
GCAATTGTAATAACAACACC+AGG - Chr2:4651904-4651923 MsG0280006663.01.T01:CDS 35.0%
GCATAACAATTAACCTCTCT+AGG + Chr2:4652549-4652568 None:intergenic 35.0%
GTTTGTCATGTGCTTATGAA+TGG - Chr2:4653024-4653043 MsG0280006663.01.T01:CDS 35.0%
TAATCTGTTCTTTCCGAACA+TGG - Chr2:4653308-4653327 MsG0280006663.01.T01:CDS 35.0%
TAATGTTATCATTGACGTGG+TGG - Chr2:4653906-4653925 MsG0280006663.01.T01:CDS 35.0%
TCTTCCAAACAGTCTCAATA+GGG - Chr2:4652620-4652639 MsG0280006663.01.T01:intron 35.0%
TCTTTCCGAACATGGTTATT+GGG - Chr2:4653316-4653335 MsG0280006663.01.T01:intron 35.0%
TTCTTTCCGAACATGGTTAT+TGG - Chr2:4653315-4653334 MsG0280006663.01.T01:intron 35.0%
! AATTTTCTGCAAACTTCGCT+TGG + Chr2:4653643-4653662 None:intergenic 35.0%
! AGTCATGTTTTCACTTGTAC+AGG + Chr2:4654175-4654194 None:intergenic 35.0%
! CACTGTATAGTTTTCTTCCT+GGG - Chr2:4653374-4653393 MsG0280006663.01.T01:intron 35.0%
! GGGAAGTTCTTTTATTAGTG+TGG - Chr2:4654897-4654916 MsG0280006663.01.T01:CDS 35.0%
! GTCATGTTTTCACTTGTACA+GGG + Chr2:4654174-4654193 None:intergenic 35.0%
! TCACTGTATAGTTTTCTTCC+TGG - Chr2:4653373-4653392 MsG0280006663.01.T01:intron 35.0%
!! ACTTCATCGTCTTTGATTTG+AGG + Chr2:4651967-4651986 None:intergenic 35.0%
!! CTAGCTTTTTGCAAGAGTAT+TGG - Chr2:4653699-4653718 MsG0280006663.01.T01:CDS 35.0%
!! CTTCATCGTCTTTGATTTGA+GGG + Chr2:4651966-4651985 None:intergenic 35.0%
!! TCAAGAGTATTTGTTACTGC+AGG - Chr2:4653521-4653540 MsG0280006663.01.T01:CDS 35.0%
!! TTTATTATCGGCTTTCAAGG+GGG - Chr2:4654012-4654031 MsG0280006663.01.T01:intron 35.0%
!!! ACGATCACAGCTTTATTTTC+AGG + Chr2:4654997-4655016 None:intergenic 35.0%
!!! GTACAAGGTATTGCAGATTT+TGG - Chr2:4654084-4654103 MsG0280006663.01.T01:intron 35.0%
AAACAGAGGACTTTGTAGCA+AGG - Chr2:4653745-4653764 MsG0280006663.01.T01:CDS 40.0%
AACAGAGGACTTTGTAGCAA+GGG - Chr2:4653746-4653765 MsG0280006663.01.T01:CDS 40.0%
AACATTCAAGTCCTGGATAG+GGG + Chr2:4652074-4652093 None:intergenic 40.0%
ACACTAACCACTGAGTAAAG+TGG - Chr2:4654597-4654616 MsG0280006663.01.T01:intron 40.0%
AGAACATTCAAGTCCTGGAT+AGG + Chr2:4652076-4652095 None:intergenic 40.0%
AGAGAAGAGAAGGAAAGTTG+TGG - Chr2:4651856-4651875 MsG0280006663.01.T01:CDS 40.0%
AGTTCCACAAGTGTTTGTGT+TGG - Chr2:4652957-4652976 MsG0280006663.01.T01:CDS 40.0%
ATCTAAGGGAGAAACCTTGT+TGG - Chr2:4653236-4653255 MsG0280006663.01.T01:CDS 40.0%
ATGGAAAGCAGTCAGCATAT+TGG - Chr2:4655123-4655142 MsG0280006663.01.T01:CDS 40.0%
ATTCCAGAACATTCAAGTCC+TGG + Chr2:4652081-4652100 None:intergenic 40.0%
CACTAACCACTGAGTAAAGT+GGG - Chr2:4654598-4654617 MsG0280006663.01.T01:intron 40.0%
CGTTTCCAAGTGGAAAATTG+GGG - Chr2:4652122-4652141 MsG0280006663.01.T01:intron 40.0%
CTCTTCCAAACAGTCTCAAT+AGG - Chr2:4652619-4652638 MsG0280006663.01.T01:intron 40.0%
CTGAAGTGGAGAAGAATGTT+TGG - Chr2:4655019-4655038 MsG0280006663.01.T01:CDS 40.0%
GAACATTCAAGTCCTGGATA+GGG + Chr2:4652075-4652094 None:intergenic 40.0%
GCAGAAAACTAAACTTGAGG+AGG + Chr2:4654139-4654158 None:intergenic 40.0%
GGGTAATGTTATCATTGACG+TGG - Chr2:4653903-4653922 MsG0280006663.01.T01:CDS 40.0%
TATCCAGGACTTGAATGTTC+TGG - Chr2:4652075-4652094 MsG0280006663.01.T01:intron 40.0%
TCGATAAGCACTCATGTGAT+AGG + Chr2:4652775-4652794 None:intergenic 40.0%
TCTACCAACACAAACACTTG+TGG + Chr2:4652964-4652983 None:intergenic 40.0%
TCTTGGAGTTGAAGAACTTC+AGG + Chr2:4651934-4651953 None:intergenic 40.0%
TGAAGTTCTTCAACTCCAAG+AGG - Chr2:4651933-4651952 MsG0280006663.01.T01:CDS 40.0%
TTGGCAAAAACGTTTCCAAG+TGG - Chr2:4652112-4652131 MsG0280006663.01.T01:intron 40.0%
TTGGTTGCTTAGAGATGCAT+CGG - Chr2:4653882-4653901 MsG0280006663.01.T01:CDS 40.0%
! CTGAAAAAGTTGCTGTTGCT+GGG - Chr2:4653109-4653128 MsG0280006663.01.T01:intron 40.0%
! CTTGGAAACGTTTTTGCCAA+CGG + Chr2:4652112-4652131 None:intergenic 40.0%
! GTGATTTGCGGATGAAATGT+GGG + Chr2:4654766-4654785 None:intergenic 40.0%
! GTGGATCTACGTGCTTTATT+TGG - Chr2:4654048-4654067 MsG0280006663.01.T01:intron 40.0%
! TCTGGAATCATTGAATCCGT+TGG - Chr2:4652093-4652112 MsG0280006663.01.T01:intron 40.0%
! TGAAAAAGTTGCTGTTGCTG+GGG - Chr2:4653110-4653129 MsG0280006663.01.T01:intron 40.0%
!! AAGAGTATTGGAGCTGATGT+TGG - Chr2:4653711-4653730 MsG0280006663.01.T01:CDS 40.0%
!! AAGGGTATCAGCTCTGTTAA+GGG + Chr2:4652013-4652032 None:intergenic 40.0%
AAGCTATCTTGGAGAGCTTC+TGG - Chr2:4652843-4652862 MsG0280006663.01.T01:intron 45.0%
AAGTGACCCACTTTACTCAG+TGG + Chr2:4654607-4654626 None:intergenic 45.0%
ACATGCAACCTCAGGAAAAC+TGG + Chr2:4653181-4653200 None:intergenic 45.0%
ACCACCCTATTGAGACTGTT+TGG + Chr2:4652627-4652646 None:intergenic 45.0%
ACCTTACCTTCTGCAATTGC+AGG + Chr2:4655045-4655064 None:intergenic 45.0%
AGAAGGTAAGGTTAAGCCTG+TGG - Chr2:4655053-4655072 MsG0280006663.01.T01:CDS 45.0%
AGGGTAAAGGAAGAAACTGG+CGG - Chr2:4653765-4653784 MsG0280006663.01.T01:CDS 45.0%
AGGTTTCTCCCTTAGATAGC+CGG + Chr2:4653233-4653252 None:intergenic 45.0%
ATAAGCGCCTTTCCTCTGAA+GGG + Chr2:4652031-4652050 None:intergenic 45.0%
ATGACAAGCCGGCTATCTAA+GGG - Chr2:4653222-4653241 MsG0280006663.01.T01:CDS 45.0%
ATTTGCATCGGAGCTTCTTC+TGG - Chr2:4654390-4654409 MsG0280006663.01.T01:intron 45.0%
CAAGTGGAAAATTGGGGATC+AGG - Chr2:4652128-4652147 MsG0280006663.01.T01:intron 45.0%
CAATGTTGCGAAATGTCTGC+TGG + Chr2:4654507-4654526 None:intergenic 45.0%
CAGATTCATGGAGGTTCAAG+TGG - Chr2:4653458-4653477 MsG0280006663.01.T01:intron 45.0%
CATGGAGGTTCAAGTGGAAT+CGG - Chr2:4653464-4653483 MsG0280006663.01.T01:intron 45.0%
CTGCTGGAGTGGACAAAAAT+GGG + Chr2:4654491-4654510 None:intergenic 45.0%
GATAGCACACTCCAGTAACA+GGG + Chr2:4654565-4654584 None:intergenic 45.0%
GCAAGGGTAAAGGAAGAAAC+TGG - Chr2:4653762-4653781 MsG0280006663.01.T01:CDS 45.0%
GGACTTTGTAGCAAGGGTAA+AGG - Chr2:4653752-4653771 MsG0280006663.01.T01:CDS 45.0%
GGGAAAGATTTGTAGACCAC+AGG + Chr2:4655072-4655091 None:intergenic 45.0%
TATGACAAGCCGGCTATCTA+AGG - Chr2:4653221-4653240 MsG0280006663.01.T01:CDS 45.0%
TCCAAACAGTCTCAATAGGG+TGG - Chr2:4652623-4652642 MsG0280006663.01.T01:intron 45.0%
TCTGCTGGAGTGGACAAAAA+TGG + Chr2:4654492-4654511 None:intergenic 45.0%
TGATAGCACACTCCAGTAAC+AGG + Chr2:4654566-4654585 None:intergenic 45.0%
TGGTTGCTTAGAGATGCATC+GGG - Chr2:4653883-4653902 MsG0280006663.01.T01:CDS 45.0%
TTTGAGGGTCTTCAACCTCT+TGG + Chr2:4651951-4651970 None:intergenic 45.0%
! CAACTGTGGGTTATGTTCAG+CGG - Chr2:4654951-4654970 MsG0280006663.01.T01:CDS 45.0%
! CTGATCCCCAATTTTCCACT+TGG + Chr2:4652130-4652149 None:intergenic 45.0%
! GAAAAAGTTGCTGTTGCTGG+GGG - Chr2:4653111-4653130 MsG0280006663.01.T01:intron 45.0%
! GCTGAAAAAGTTGCTGTTGC+TGG - Chr2:4653108-4653127 MsG0280006663.01.T01:intron 45.0%
! GGTGATTTGCGGATGAAATG+TGG + Chr2:4654767-4654786 None:intergenic 45.0%
! TGAAGAACTTCAGGTTCACC+TGG + Chr2:4651925-4651944 None:intergenic 45.0%
!! GAAGGGTATCAGCTCTGTTA+AGG + Chr2:4652014-4652033 None:intergenic 45.0%
AAGTTCTTCCGGTTCCACCT+GGG - Chr2:4653136-4653155 MsG0280006663.01.T01:intron 50.0%
ACAGAGCTGATACCCTTCAG+AGG - Chr2:4652016-4652035 MsG0280006663.01.T01:CDS 50.0%
ACAGTCACATAACGGCTGCT+TGG + Chr2:4653006-4653025 None:intergenic 50.0%
AGAGAAATCCCAGGTGGAAC+CGG + Chr2:4653147-4653166 None:intergenic 50.0%
AGCTGTGATCGTTGCTGAAG+TGG - Chr2:4655005-4655024 MsG0280006663.01.T01:CDS 50.0%
ATCAGCTCTGTTAAGGGCAG+TGG + Chr2:4652007-4652026 None:intergenic 50.0%
CACACAGTACATGCAACCTC+AGG + Chr2:4653189-4653208 None:intergenic 50.0%
CAGGTATGTGCTCTTCTAGC+TGG - Chr2:4653075-4653094 MsG0280006663.01.T01:CDS 50.0%
CAGTGGCGTGAACTTTGATG+AGG + Chr2:4651990-4652009 None:intergenic 50.0%
CTGAGGTTGCATGTACTGTG+TGG - Chr2:4653187-4653206 MsG0280006663.01.T01:intron 50.0%
GACGTGTCTACTGTCTACTC+TGG + Chr2:4654683-4654702 None:intergenic 50.0%
GATAAGCGCCTTTCCTCTGA+AGG + Chr2:4652032-4652051 None:intergenic 50.0%
GCATCCTTCAGAGAAATCCC+AGG + Chr2:4653156-4653175 None:intergenic 50.0%
GCCTGCAATTGCAGAAGGTA+AGG - Chr2:4655041-4655060 MsG0280006663.01.T01:CDS 50.0%
GCTGACTGCTTTCCATAAGC+CGG + Chr2:4655119-4655138 None:intergenic 50.0%
GCTGATACCCTTCAGAGGAA+AGG - Chr2:4652021-4652040 MsG0280006663.01.T01:CDS 50.0%
GTTATCATTGACGTGGTGGC+AGG - Chr2:4653910-4653929 MsG0280006663.01.T01:CDS 50.0%
GTTTGGCCTGCAATTGCAGA+AGG - Chr2:4655036-4655055 MsG0280006663.01.T01:CDS 50.0%
TATGAGGTGTGTGGCTTCAC+AGG - Chr2:4653056-4653075 MsG0280006663.01.T01:CDS 50.0%
TCCACCTGGGATTTCTCTGA+AGG - Chr2:4653149-4653168 MsG0280006663.01.T01:intron 50.0%
TCCTTCAGAGAAATCCCAGG+TGG + Chr2:4653153-4653172 None:intergenic 50.0%
TTGCGAAATGTCTGCTGGAG+TGG + Chr2:4654502-4654521 None:intergenic 50.0%
! AAGGAAGAAACTGGCGGACA+AGG - Chr2:4653771-4653790 MsG0280006663.01.T01:CDS 50.0%
! GTATGTGCTCTTCTAGCTGG+AGG - Chr2:4653078-4653097 MsG0280006663.01.T01:CDS 50.0%
!! TCAAGGGGGTGTTTCTACAG+AGG - Chr2:4654026-4654045 MsG0280006663.01.T01:intron 50.0%
!! TTTCCCCCTTTCTGAAGCTG+CGG - Chr2:4655086-4655105 MsG0280006663.01.T01:CDS 50.0%
AGCCTCCGCAGCTTCAGAAA+GGG + Chr2:4655094-4655113 None:intergenic 55.0%
CAAGTTCTTCCGGTTCCACC+TGG - Chr2:4653135-4653154 MsG0280006663.01.T01:intron 55.0%
CTTGTGTCAGGCCCTGTTAC+TGG - Chr2:4654551-4654570 MsG0280006663.01.T01:intron 55.0%
GGCAAGCGTCTCACTGTACA+AGG - Chr2:4654069-4654088 MsG0280006663.01.T01:intron 55.0%
TGCTGGGGGACAAGTTCTTC+CGG - Chr2:4653125-4653144 MsG0280006663.01.T01:intron 55.0%
! ATAGGGGCTAGCACCTTGAG+GGG + Chr2:4652058-4652077 None:intergenic 55.0%
! GATAGGGGCTAGCACCTTGA+GGG + Chr2:4652059-4652078 None:intergenic 55.0%
! GGATGCAGCCAGTTTTCCTG+AGG - Chr2:4653170-4653189 MsG0280006663.01.T01:intron 55.0%
! TGTGCTCTTCTAGCTGGAGG+TGG - Chr2:4653081-4653100 MsG0280006663.01.T01:CDS 55.0%
! TGTGGGTTATGTTCAGCGGC+TGG - Chr2:4654955-4654974 MsG0280006663.01.T01:CDS 55.0%
!! AGGGGGTGTTTCTACAGAGG+TGG - Chr2:4654029-4654048 MsG0280006663.01.T01:intron 55.0%
CCTCCGCAGCTTCAGAAAGG+GGG + Chr2:4655092-4655111 None:intergenic 60.0%
GAGCCTCCGCAGCTTCAGAA+AGG + Chr2:4655095-4655114 None:intergenic 60.0%
GCCTCCGCAGCTTCAGAAAG+GGG + Chr2:4655093-4655112 None:intergenic 60.0%
! CAAGGTGCTAGCCCCTATCC+AGG - Chr2:4652060-4652079 MsG0280006663.01.T01:intron 60.0%
! GGATAGGGGCTAGCACCTTG+AGG + Chr2:4652060-4652079 None:intergenic 60.0%
! TAGGGGCTAGCACCTTGAGG+GGG + Chr2:4652057-4652076 None:intergenic 60.0%
CTGAAGCTGCGGAGGCTCAC+CGG - Chr2:4655097-4655116 MsG0280006663.01.T01:CDS 65.0%
GGCGCTTATCCTCCCCCTCA+AGG - Chr2:4652042-4652061 MsG0280006663.01.T01:intron 65.0%
!! CCCCCTTTCTGAAGCTGCGG+AGG - Chr2:4655089-4655108 MsG0280006663.01.T01:CDS 65.0%
!! TGCGGAGGCTCACCGGCTTA+TGG - Chr2:4655104-4655123 MsG0280006663.01.T01:CDS 65.0%
! GGGCTAGCACCTTGAGGGGG+AGG + Chr2:4652054-4652073 None:intergenic 70.0%
Chromosome Type Strat End Strand Name
Chr2 gene 4651850 4655167 4651850 ID=MsG0280006663.01;Name=MsG0280006663.01
Chr2 mRNA 4651850 4655167 4651850 ID=MsG0280006663.01.T01;Parent=MsG0280006663.01;Name=MsG0280006663.01.T01;_AED=0.50;_eAED=0.57;_QI=0|0|0|1|0.8|0.66|6|0|401
Chr2 exon 4654868 4655167 4654868 ID=MsG0280006663.01.T01:exon:1713;Parent=MsG0280006663.01.T01
Chr2 exon 4653640 4653939 4653640 ID=MsG0280006663.01.T01:exon:1712;Parent=MsG0280006663.01.T01
Chr2 exon 4653475 4653556 4653475 ID=MsG0280006663.01.T01:exon:1711;Parent=MsG0280006663.01.T01
Chr2 exon 4653203 4653332 4653203 ID=MsG0280006663.01.T01:exon:1710;Parent=MsG0280006663.01.T01
Chr2 exon 4652927 4653123 4652927 ID=MsG0280006663.01.T01:exon:1709;Parent=MsG0280006663.01.T01
Chr2 exon 4651850 4652046 4651850 ID=MsG0280006663.01.T01:exon:1708;Parent=MsG0280006663.01.T01
Chr2 CDS 4654868 4655167 4654868 ID=MsG0280006663.01.T01:cds;Parent=MsG0280006663.01.T01
Chr2 CDS 4653640 4653939 4653640 ID=MsG0280006663.01.T01:cds;Parent=MsG0280006663.01.T01
Chr2 CDS 4653475 4653556 4653475 ID=MsG0280006663.01.T01:cds;Parent=MsG0280006663.01.T01
Chr2 CDS 4653203 4653332 4653203 ID=MsG0280006663.01.T01:cds;Parent=MsG0280006663.01.T01
Chr2 CDS 4652927 4653123 4652927 ID=MsG0280006663.01.T01:cds;Parent=MsG0280006663.01.T01
Chr2 CDS 4651850 4652046 4651850 ID=MsG0280006663.01.T01:cds;Parent=MsG0280006663.01.T01
Gene Sequence

>MsG0280006663.01.T01

TGTGAGAGAGAAGAGAAGGAAAGTTGTGGAAAAATCAAAGCAACAAAAATGAAGGCAATTGTAATAACAACACCAGGTGAACCTGAAGTTCTTCAACTCCAAGAGGTTGAAGACCCTCAAATCAAAGACGATGAAGTCCTCATCAAAGTTCACGCCACTGCCCTTAACAGAGCTGATACCCTTCAGAGGAAAGGCGCTTATCCTCCCCCTCAAGGTGCTAGCCCCTATCCAGGACTTGAATGTTCTGGAATCATTGAATCCGTTGGCAAAAACGTTTCCAAGTGGAAAATTGGGGATCAGGTATGTGCTCTTCTAGCTGGAGGTGGATATGCTGAAAAAGTTGCTGTTGCTGGGGGACAAGTTCTTCCGGTTCCACCTGGGATTTCTCTGAAGGATGCAGCCAGTTTTCCTGAGGTTGCATGTACTGTGTGGTCAACTATTTTTATGACAAGCCGGCTATCTAAGGGAGAAACCTTGTTGGTAAGTCGTATGATTGTAATCAGTTCATCTTTTCAGGAAAAAAAATACAATAATCTGTTCTTTCCGAACATGGTTATTGGGTATTTTGTCATTGATTCTTTCCATGCTTTTGATCTCACTATTCATGGAGGTTCAAGTGGAATCGGAACATTCGCAATTCAGATAGCTAAGTACCTAGGATCAAGAGTATTTGTTACTGCAGGAAGTGAAGAGAAGCTAGCTTTTTGCAAGAGTATTGGAGCTGATGTTGGTATCAATTACAAAACAGAGGACTTTGTAGCAAGGGTAAAGGAAGAAACTGGCGGACAAGGTATTACCTATGTGAACATGATAGATGCATCGGGTAATGTTATCATTGACGTGGTGGCAGGTGTTGATGTTATTCTTGATTGTATGGGAGCATCCTACTATCAAAGAAATCTTGCTAGCTTAAATTTTGATGGAAGGCTTTTTATTATCGGCTTTCAAGGGGGTGTTTCTACAGAGGTGGATCTACGTGCTTTATTTGGCAAGCGTCTCACTGTACAAGCGGCTGGCTTGCGAAGTAGAAGTCCTGAAAATAAAGCTGTGATCGTTGCTGAAGTGGAGAAGAATGTTTGGCCTGCAATTGCAGAAGGTAAGGTTAAGCCTGTGGTCTACAAATCTTTCCCCCTTTCTGAAGCTGCGGAGGCTCACCGGCTTATGGAAAGCAGTCAGCATATTGGAAAGATATTGCTTGTGGCATGA
Protein sequence

>MsG0280006663.01.T01

CEREEKESCGKIKATKMKAIVITTPGEPEVLQLQEVEDPQIKDDEVLIKVHATALNRADTLQRKGAYPPPQGASPYPGLECSGIIESVGKNVSKWKIGDQVCALLAGGGYAEKVAVAGGQVLPVPPGISLKDAASFPEVACTVWSTIFMTSRLSKGETLLVSRMIVISSSFQEKKYNNLFFPNMVIGYFVIDSFHAFDLTIHGGSSGIGTFAIQIAKYLGSRVFVTAGSEEKLAFCKSIGADVGINYKTEDFVARVKEETGGQGITYVNMIDASGNVIIDVVAGVDVILDCMGASYYQRNLASLNFDGRLFIIGFQGGVSTEVDLRALFGKRLTVQAAGLRSRSPENKAVIVAEVEKNVWPAIAEGKVKPVVYKSFPLSEAAEAHRLMESSQHIGKILLVA*