AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0280006697.01

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0280006697.01.T01 MTR_2g013120 97.863 655 14 0 1 655 1 655 0.0 1326
MsG0280006697.01.T01 MTR_3g099190 80.732 628 115 3 31 655 27 651 0.0 1066
MsG0280006697.01.T01 MTR_2g027220 73.355 608 157 2 27 633 10 613 0.0 944
MsG0280006697.01.T01 MTR_6g004200 24.440 491 331 11 84 550 6 480 3.03e-34 138
MsG0280006697.01.T01 MTR_7g069540 23.034 534 361 16 63 574 28 533 6.26e-17 85.1
MsG0280006697.01.T01 MTR_2g009330 21.780 528 347 17 79 574 47 540 5.73e-16 82.0
MsG0280006697.01.T01 MTR_5g046610 22.325 542 377 17 52 574 19 535 2.17e-15 80.1
MsG0280006697.01.T01 MTR_4g017200 22.325 542 377 17 52 574 19 535 2.77e-15 79.7
MsG0280006697.01.T01 MTR_2g027200 50.000 62 12 1 555 616 1 43 5.54e-14 67.0
MsG0280006697.01.T01 MTR_2g015560 21.748 515 341 17 88 572 26 508 1.97e-13 73.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0280006697.01.T01 AT3G48560 83.618 586 96 0 70 655 85 670 0.0 1045
MsG0280006697.01.T01 AT5G17380 27.328 494 309 12 84 550 14 484 7.18e-47 174
MsG0280006697.01.T01 AT5G01330 23.709 523 325 16 88 574 36 520 4.87e-20 94.7
MsG0280006697.01.T01 AT5G01320 22.753 523 330 15 88 574 47 531 3.08e-18 89.4
MsG0280006697.01.T01 AT4G33070 22.519 524 330 15 88 574 51 535 6.20e-17 85.1
MsG0280006697.01.T01 AT5G54960 21.782 505 353 14 88 572 51 533 1.18e-15 80.9

Find 215 sgRNAs with CRISPR-Local

Find 248 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GAAGGGGATCAATCGAATTT+TGG 0.232600 2:+5129240 MsG0280006697.01.T01:CDS
CCCAATATGTTGAAGTTTGC+AGG 0.240705 2:+5129778 MsG0280006697.01.T01:CDS
GATCAACCTATTAGGTTAAC+TGG 0.252439 2:+5128785 MsG0280006697.01.T01:CDS
AATATTTCTTTCTCATTGGC+TGG 0.252481 2:-5129754 None:intergenic
TTGAGCTTGAAGGGAGTGTT+TGG 0.263351 2:-5128143 None:intergenic
TTCAACAACAATATCTTAAC+AGG 0.266547 2:-5129652 None:intergenic
GTGTTTGGGGAAGTGGAAAA+TGG 0.269439 2:-5128128 None:intergenic
CGCTATGGGATTTGGATTGC+CGG 0.275397 2:+5129516 MsG0280006697.01.T01:CDS
ACCTGCAAACTTCAACATAT+TGG 0.275568 2:-5129779 None:intergenic
CGAATTGGGATCAACCTATT+AGG 0.276452 2:+5128777 MsG0280006697.01.T01:CDS
ACAGATTGTGAGGTTGTTAT+TGG 0.278604 2:+5128853 MsG0280006697.01.T01:CDS
GGTCTTGGCGCTATGGGATT+TGG 0.283365 2:+5129508 MsG0280006697.01.T01:CDS
AGGTTTGATGATCGGGTTAC+TGG 0.289362 2:+5129100 MsG0280006697.01.T01:CDS
CCTGCAAACTTCAACATATT+GGG 0.314608 2:-5129778 None:intergenic
CAGGTAGGTGTGAGCTCTAT+TGG 0.318135 2:-5129725 None:intergenic
TGCTAGTACTTTGATGGGGT+TGG 0.322703 2:+5128967 MsG0280006697.01.T01:CDS
AACAGGTTTCTGTTCCGAAT+TGG 0.337313 2:+5128762 MsG0280006697.01.T01:CDS
TGTTCCAAATGTGCCTCTTT+CGG 0.341709 2:-5128833 None:intergenic
ATATACCCAGTTAACCTAAT+AGG 0.345011 2:-5128791 None:intergenic
ATTTGGATTGCCGGCTGCCA+TGG 0.358680 2:+5129525 MsG0280006697.01.T01:CDS
GGGGAATATTTCTTTCTCAT+TGG 0.363131 2:-5129758 None:intergenic
GGCACCGAAAGAGGCACATT+TGG 0.369187 2:+5128829 MsG0280006697.01.T01:CDS
GATCCATTTGCAGGAATCAT+TGG 0.370032 2:-5129928 None:intergenic
TGAGCTTGAAGGGAGTGTTT+GGG 0.371196 2:-5128142 None:intergenic
TGATTCTGAAAACGTGGTTT+TGG 0.372112 2:-5128100 None:intergenic
GGATTTGAAGTTGGCTTTGA+AGG 0.374802 2:+5129222 MsG0280006697.01.T01:CDS
ACCTGTTGCTAGTACTTTGA+TGG 0.375227 2:+5128961 MsG0280006697.01.T01:CDS
GAAGGGAGTGTTTGGGGAAG+TGG 0.375779 2:-5128135 None:intergenic
CAGCCTCATGTGTCGGTTTG+TGG 0.375821 2:+5129199 MsG0280006697.01.T01:CDS
AAGCTTTATGATGAATGTTC+AGG 0.379274 2:+5129600 MsG0280006697.01.T01:CDS
ACAGGTTTCTGTTCCGAATT+GGG 0.386257 2:+5128763 MsG0280006697.01.T01:CDS
TCCTCAAAGGATCCATTTGC+AGG 0.389166 2:-5129937 None:intergenic
ATGTGCCTCTTTCGGTGCCT+TGG 0.389362 2:-5128825 None:intergenic
ACCTAAGGATATTCAGCAAC+AGG 0.392227 2:+5128745 MsG0280006697.01.T01:CDS
GGTTAACTGGGTATATGAAT+AGG 0.392870 2:+5128798 MsG0280006697.01.T01:CDS
TTCTGCTGGTCTTGGCGCTA+TGG 0.393331 2:+5129501 MsG0280006697.01.T01:CDS
ACAGCAGCTCCCATGGCAGC+CGG 0.395329 2:-5129535 None:intergenic
GATATTGATGCTGCTGAGAT+TGG 0.396931 2:+5129166 MsG0280006697.01.T01:CDS
TGGGGTTAGGTTTGATGATC+GGG 0.402613 2:+5129093 MsG0280006697.01.T01:CDS
GGTGTCTGCATCGCCACTTC+CGG 0.403895 2:+5128467 MsG0280006697.01.T01:CDS
CGTCGAAGCACTCGAACGTC+AGG 0.404386 2:+5128292 MsG0280006697.01.T01:CDS
GGGTTCGTTAGGGGCAAATC+GGG 0.405793 2:-5128249 None:intergenic
GCTAGTACTTTGATGGGGTT+GGG 0.408704 2:+5128968 MsG0280006697.01.T01:CDS
TGGTTGACTTCTGCTGGTCT+TGG 0.411154 2:+5129493 MsG0280006697.01.T01:CDS
ATAGAGAGTAAGCTTGATTT+CGG 0.412100 2:+5129274 MsG0280006697.01.T01:CDS
GAGAATTCGTTGCAGATGCT+TGG 0.413491 2:+5129010 MsG0280006697.01.T01:CDS
AACTGAATGATCAGAAAGTT+AGG 0.416856 2:+5129311 MsG0280006697.01.T01:CDS
AGCCTCATGTGTCGGTTTGT+GGG 0.418936 2:+5129200 MsG0280006697.01.T01:CDS
TTGGGGTTAGGTTTGATGAT+CGG 0.419793 2:+5129092 MsG0280006697.01.T01:CDS
TGTGCCTCTTTCGGTGCCTT+GGG 0.420636 2:-5128824 None:intergenic
AGGCGGTTTGTTGAGTTAAC+CGG 0.420654 2:+5128935 MsG0280006697.01.T01:CDS
GGGGTTCGTTAGGGGCAAAT+CGG 0.423916 2:-5128250 None:intergenic
TCCTCCGCAGTATGCTATAC+AGG 0.426227 2:+5129369 MsG0280006697.01.T01:CDS
TGCATCGCCACTTCCGGCCC+AGG 0.426512 2:+5128473 MsG0280006697.01.T01:CDS
ATTTCCATTGAAGCGCCGCC+AGG 0.431656 2:-5128338 None:intergenic
CCATCACCGGTCAGGTTCCC+CGG 0.439113 2:+5128555 MsG0280006697.01.T01:CDS
TCTTATTGCCATCACCGGTC+AGG 0.440205 2:+5128547 MsG0280006697.01.T01:CDS
TCTGCTGGTCTTGGCGCTAT+GGG 0.442287 2:+5129502 MsG0280006697.01.T01:CDS
GCTCGTTCCTCCGGTCTCCC+TGG 0.442490 2:+5128446 MsG0280006697.01.T01:CDS
CAATAGAGCTCACACCTACC+TGG 0.446335 2:+5129726 MsG0280006697.01.T01:CDS
TTTGGATTGCCGGCTGCCAT+GGG 0.447144 2:+5129526 MsG0280006697.01.T01:CDS
GATTTGAAGTTGGCTTTGAA+GGG 0.448952 2:+5129223 MsG0280006697.01.T01:CDS
TCTCATTGGCTGGGTCTCCC+AGG 0.453592 2:-5129744 None:intergenic
CCTGTTGCTAGTACTTTGAT+GGG 0.454512 2:+5128962 MsG0280006697.01.T01:CDS
GTTGGGTTCCTATCCTAGTT+CGG 0.456275 2:+5128985 MsG0280006697.01.T01:CDS
TGTTTGGGGAAGTGGAAAAT+GGG 0.456756 2:-5128127 None:intergenic
TGCAGGTGCTTGTGGTATAC+CGG 0.457670 2:+5129795 MsG0280006697.01.T01:CDS
CATCAAGAAGGTAGGGGCCA+GGG 0.457929 2:-5129876 None:intergenic
ACATCAAGAAGGTAGGGGCC+AGG 0.461753 2:-5129877 None:intergenic
CATCAGTACCAATCATTCTC+CGG 0.464538 2:-5128574 None:intergenic
TATGATGAATGTTCAGGAGT+TGG 0.465434 2:+5129606 MsG0280006697.01.T01:CDS
CAGGTTCCCCGGAGAATGAT+TGG 0.466447 2:+5128566 MsG0280006697.01.T01:CDS
ATCAGTACCAATCATTCTCC+GGG 0.467400 2:-5128573 None:intergenic
CCGGGGAACCTGACCGGTGA+TGG 0.468521 2:-5128555 None:intergenic
TTAGGTATATCGATCAAAAC+AGG 0.472536 2:-5128728 None:intergenic
AGTAGGGTTGGAGATGGAAG+CGG 0.473325 2:-5128186 None:intergenic
TTGCAGATGCTTGGGATGCA+TGG 0.475365 2:+5129019 MsG0280006697.01.T01:CDS
CCCATCAAAGTACTAGCAAC+AGG 0.475566 2:-5128962 None:intergenic
TTACCCTGGCGGCGCTTCAA+TGG 0.476078 2:+5128334 MsG0280006697.01.T01:CDS
TTCTTGACAAGCTTACCAAT+GGG 0.480222 2:+5129392 MsG0280006697.01.T01:CDS
AACCACAATAGCGTCGGGAT+TGG 0.482109 2:-5129560 None:intergenic
GTAAGCTTGATTTCGGAGGT+TGG 0.484920 2:+5129281 MsG0280006697.01.T01:CDS
AGGCAGTGGTTGACTTCTGC+TGG 0.485926 2:+5129487 MsG0280006697.01.T01:CDS
CTAATAGGTTGATCCCAATT+CGG 0.489964 2:-5128776 None:intergenic
TTGCCAATGATTCCTGCAAA+TGG 0.490698 2:+5129925 MsG0280006697.01.T01:CDS
GATGCAGACACCAGGGAGAC+CGG 0.491267 2:-5128456 None:intergenic
ATATTTCTTTCTCATTGGCT+GGG 0.491931 2:-5129753 None:intergenic
GAGGGTTACGCTCGTTCCTC+CGG 0.496778 2:+5128437 MsG0280006697.01.T01:CDS
CTCTTTGTCACACGAGCTGC+CGG 0.502154 2:-5129814 None:intergenic
CCACCACCAACATACAAAAC+AGG 0.502296 2:-5128887 None:intergenic
AGTAGCACCTGGGCCGGAAG+TGG 0.502445 2:-5128480 None:intergenic
TCCTGCAAATGGATCCTTTG+AGG 0.504950 2:+5129936 MsG0280006697.01.T01:CDS
AGAATTCGTTGCAGATGCTT+GGG 0.506752 2:+5129011 MsG0280006697.01.T01:CDS
GAAGTGGCGATGCAGACACC+AGG 0.511122 2:-5128464 None:intergenic
AGAGCGGTGGTTGAGCTTGA+AGG 0.511308 2:-5128153 None:intergenic
GGTTTGTGGGGATTTGAAGT+TGG 0.511799 2:+5129213 MsG0280006697.01.T01:CDS
ACCTGTTGCTGAATATCCTT+AGG 0.511983 2:-5128746 None:intergenic
TGACCGGTGATGGCAATAAG+AGG 0.515800 2:-5128545 None:intergenic
GCCCCTAACGAACCCCGAAA+AGG 0.516458 2:+5128257 MsG0280006697.01.T01:CDS
GATCTAGTTACCTCAACAAT+CGG 0.519783 2:-5128611 None:intergenic
TGAATTGTAGCGAGGAATTG+AGG 0.520671 2:+5128915 MsG0280006697.01.T01:CDS
TCAAACTTCTTATAACTCAT+CGG 0.521295 2:-5129337 None:intergenic
ATATTGATGCTGCTGAGATT+GGG 0.522267 2:+5129167 MsG0280006697.01.T01:CDS
ATTGGCAACAGCAGCTCCCA+TGG 0.524757 2:-5129542 None:intergenic
TCAGGAGTTGGCTACTATCA+AGG 0.529463 2:+5129618 MsG0280006697.01.T01:CDS
CATTCTCCGGGGAACCTGAC+CGG 0.531322 2:-5128561 None:intergenic
GGGGAGGCTATCATAAGTAC+TGG 0.534253 2:+5129412 MsG0280006697.01.T01:CDS
GCCTCATGTGTCGGTTTGTG+GGG 0.534297 2:+5129201 MsG0280006697.01.T01:CDS
AACGCTTCATTCACTATCCT+AGG 0.535019 2:-5128677 None:intergenic
GGGAAATGAATTGTTGAGGT+GGG 0.536278 2:-5128229 None:intergenic
GAGCGGTGGTTGAGCTTGAA+GGG 0.536459 2:-5128152 None:intergenic
CTGACGAGATTAGTAGCACC+TGG 0.538331 2:-5128491 None:intergenic
ATTGGCTGGGTCTCCCAGGT+AGG 0.539147 2:-5129740 None:intergenic
TTGAAGTTTGCAGGTGCTTG+TGG 0.539914 2:+5129787 MsG0280006697.01.T01:CDS
ACAAATGTCTTCGCTTACCC+TGG 0.542915 2:+5128320 MsG0280006697.01.T01:CDS
ATCAAGAAGGTAGGGGCCAG+GGG 0.543925 2:-5129875 None:intergenic
ACAATGACATCAAGAAGGTA+GGG 0.544765 2:-5129883 None:intergenic
ATATCGATCAAAACAGGTCC+AGG 0.546128 2:-5128722 None:intergenic
TCAAGAAACTCCGATTGTTG+AGG 0.547823 2:+5128601 MsG0280006697.01.T01:CDS
CTTGGGTATGGTTGTCCAGT+GGG 0.549540 2:+5129684 MsG0280006697.01.T01:CDS
GTTGTTGAACAATCAACACT+TGG 0.549760 2:+5129666 MsG0280006697.01.T01:CDS
GTTACCCAAGGCACCGAAAG+AGG 0.549898 2:+5128820 MsG0280006697.01.T01:CDS
GAAATGAATTGTTGAGGTGG+GGG 0.552213 2:-5128227 None:intergenic
ATGTCAACCACAATAGCGTC+GGG 0.553806 2:-5129565 None:intergenic
GTTCCTCTTATTGCCATCAC+CGG 0.554774 2:+5128542 MsG0280006697.01.T01:CDS
ATTCTCATCCGAACTAGGAT+AGG 0.554840 2:-5128993 None:intergenic
CACATTTGGAACAGATTGTG+AGG 0.555893 2:+5128843 MsG0280006697.01.T01:CDS
AACGAATTCTCATCCGAACT+AGG 0.556901 2:-5128998 None:intergenic
GTTCTTGACAAGCTTACCAA+TGG 0.557913 2:+5129391 MsG0280006697.01.T01:CDS
GAGATTAGTAGCACCTGGGC+CGG 0.558857 2:-5128486 None:intergenic
AAGAACAAGATAATTATGCT+TGG 0.559558 2:-5128639 None:intergenic
GGTACAAGAGACCGAGGCAG+TGG 0.562380 2:+5129473 MsG0280006697.01.T01:CDS
TGCAGATGCTTGGGATGCAT+GGG 0.563717 2:+5129020 MsG0280006697.01.T01:CDS
AAATGAATTGTTGAGGTGGG+GGG 0.565609 2:-5128226 None:intergenic
GAGGACGTTACGAATGGCGG+TGG 0.567894 2:-5128381 None:intergenic
GCAGAAGTCAACCACTGCCT+CGG 0.568184 2:-5129484 None:intergenic
CAGAAAATGTTAGATACCCC+TGG 0.568513 2:+5129859 MsG0280006697.01.T01:CDS
ATTTGAAGTTGGCTTTGAAG+GGG 0.570043 2:+5129224 MsG0280006697.01.T01:CDS
CAATATGAACAATCTTCGCC+CGG 0.571633 2:-5129144 None:intergenic
ACTTATCCTGCCATCACCCT+CGG 0.572531 2:-5129968 None:intergenic
GGAAATGAATTGTTGAGGTG+GGG 0.573854 2:-5128228 None:intergenic
TACAATGACATCAAGAAGGT+AGG 0.574462 2:-5129884 None:intergenic
TCATAACCGAGGGTGATGGC+AGG 0.574956 2:+5129962 MsG0280006697.01.T01:CDS
TGGTTGTCCAGTGGGAGGAT+CGG 0.577376 2:+5129692 MsG0280006697.01.T01:CDS
GAGCTTGAAGGGAGTGTTTG+GGG 0.580053 2:-5128141 None:intergenic
GAACAATCAACACTTGGGTA+TGG 0.580544 2:+5129672 MsG0280006697.01.T01:CDS
TATAGAACCGATCCTCCCAC+TGG 0.583559 2:-5129699 None:intergenic
TTAGCTTCTAGTGGTAGACC+TGG 0.583844 2:+5128704 MsG0280006697.01.T01:CDS
CTCGGTTATGACATCCTCAA+AGG 0.584779 2:-5129950 None:intergenic
GGGTATGGTTGTCCAGTGGG+AGG 0.585047 2:+5129687 MsG0280006697.01.T01:CDS
CGGCAGCTCGTGTGACAAAG+AGG 0.586144 2:+5129815 MsG0280006697.01.T01:CDS
CGGGAAATGAATTGTTGAGG+TGG 0.587217 2:-5128230 None:intergenic
AGGTGGAATATTCGCTGCCG+AGG 0.587958 2:+5128418 MsG0280006697.01.T01:CDS
TTCCACCTTGTTCGTGACGA+GGG 0.588122 2:-5128403 None:intergenic
GGTTTGATGATCGGGTTACT+GGG 0.588175 2:+5129101 MsG0280006697.01.T01:CDS
GAGAGTAAGCTTGATTTCGG+AGG 0.590245 2:+5129277 MsG0280006697.01.T01:CDS
TTGTTGAACAATCAACACTT+GGG 0.590968 2:+5129667 MsG0280006697.01.T01:CDS
GCTATCATAAGTACTGGTGT+TGG 0.593538 2:+5129418 MsG0280006697.01.T01:CDS
ATCAACCTATTAGGTTAACT+GGG 0.594575 2:+5128786 MsG0280006697.01.T01:CDS
GTCCTCCCTCGTCACGAACA+AGG 0.595803 2:+5128398 MsG0280006697.01.T01:CDS
GATGTCATAACCGAGGGTGA+TGG 0.596424 2:+5129958 MsG0280006697.01.T01:CDS
CTGCAAACTTCAACATATTG+GGG 0.597132 2:-5129777 None:intergenic
TGCCAATCCCGACGCTATTG+TGG 0.597385 2:+5129558 MsG0280006697.01.T01:CDS
ACTTATGATAGCCTCCCCAT+TGG 0.598564 2:-5129407 None:intergenic
ATTCCACCTTGTTCGTGACG+AGG 0.598895 2:-5128404 None:intergenic
AATAGAGCTCACACCTACCT+GGG 0.601839 2:+5129727 MsG0280006697.01.T01:CDS
TCGGGTTACTGGGAAGCTTG+AGG 0.605782 2:+5129111 MsG0280006697.01.T01:CDS
CTGTTGCTAGTACTTTGATG+GGG 0.606374 2:+5128963 MsG0280006697.01.T01:CDS
GTGGTTGACATCGATGGTGA+TGG 0.607155 2:+5129577 MsG0280006697.01.T01:CDS
GGCAGCTCGTGTGACAAAGA+GGG 0.609397 2:+5129816 MsG0280006697.01.T01:CDS
GAATAAGCAGCCTCATGTGT+CGG 0.610801 2:+5129192 MsG0280006697.01.T01:CDS
TTTCCATTGAAGCGCCGCCA+GGG 0.615322 2:-5128337 None:intergenic
TTGATGTTGATGATATACCT+AGG 0.619737 2:+5128660 MsG0280006697.01.T01:CDS
TTTGAGGATGTCATAACCGA+GGG 0.621237 2:+5129952 MsG0280006697.01.T01:CDS
ACGAGGGAGGACGTTACGAA+TGG 0.622770 2:-5128387 None:intergenic
GATGTCAACCACAATAGCGT+CGG 0.624097 2:-5129566 None:intergenic
GGTGGAATATTCGCTGCCGA+GGG 0.624227 2:+5128419 MsG0280006697.01.T01:CDS
GGAGGAACGAGCGTAACCCT+CGG 0.628310 2:-5128435 None:intergenic
TGGTGAAGATGAAGAGATGG+TGG 0.629345 2:-5128063 None:intergenic
TTGTGGTGAAGATGAAGAGA+TGG 0.630262 2:-5128066 None:intergenic
CAATGACATCAAGAAGGTAG+GGG 0.631239 2:-5129882 None:intergenic
GGCAACACATGCTCTTGATG+CGG 0.634193 2:-5129907 None:intergenic
TGACAAGCTTACCAATGGGG+AGG 0.634568 2:+5129396 MsG0280006697.01.T01:CDS
GACTGTTTATGCTAATTATG+CGG 0.636569 2:+5129042 MsG0280006697.01.T01:CDS
GCAGACACCAGGGAGACCGG+AGG 0.638324 2:-5128453 None:intergenic
CACCTTGTTCGTGACGAGGG+AGG 0.638696 2:-5128400 None:intergenic
TTTATAGGTACAAGAGACCG+AGG 0.639559 2:+5129467 MsG0280006697.01.T01:CDS
GTGTTGGACAACATCAGATG+TGG 0.643554 2:+5129434 MsG0280006697.01.T01:CDS
TGGTAGTTTGAATTGTAGCG+AGG 0.644126 2:+5128907 MsG0280006697.01.T01:CDS
AGTACTAGCAACAGGTACAC+CGG 0.645359 2:-5128954 None:intergenic
GCGGTACAATGACATCAAGA+AGG 0.647744 2:-5129888 None:intergenic
GCTATTGTGGTTGACATCGA+TGG 0.649650 2:+5129571 MsG0280006697.01.T01:CDS
ACTTGGGTATGGTTGTCCAG+TGG 0.649969 2:+5129683 MsG0280006697.01.T01:CDS
GTCGAAGCACTCGAACGTCA+GGG 0.650703 2:+5128293 MsG0280006697.01.T01:CDS
GGTAAGTGATTCTGAAAACG+TGG 0.650896 2:-5128106 None:intergenic
AGGGAGGACGTTACGAATGG+CGG 0.657905 2:-5128384 None:intergenic
AATCGGGAAATGAATTGTTG+AGG 0.661173 2:-5128233 None:intergenic
TCCCCACAAACCGACACATG+AGG 0.664573 2:-5129202 None:intergenic
GGTGCTACTAATCTCGTCAG+TGG 0.668110 2:+5128494 MsG0280006697.01.T01:CDS
ACCTGTATAGCATACTGCGG+AGG 0.674124 2:-5129370 None:intergenic
AGAGATGGTGGTTGTGAACG+CGG 0.674476 2:-5128051 None:intergenic
CTTTGAGGATGTCATAACCG+AGG 0.677141 2:+5129951 MsG0280006697.01.T01:CDS
GTATATGAATAGGTTACCCA+AGG 0.677418 2:+5128808 MsG0280006697.01.T01:CDS
TGTTGGACAACATCAGATGT+GGG 0.692591 2:+5129435 MsG0280006697.01.T01:CDS
GACGTTCGAGTGCTTCGACG+AGG 0.694030 2:-5128289 None:intergenic
AAGTGGCGATGCAGACACCA+GGG 0.695335 2:-5128463 None:intergenic
AATGTCTTCGCTTACCCTGG+CGG 0.697805 2:+5128323 MsG0280006697.01.T01:CDS
TCTTGACAAGCTTACCAATG+GGG 0.698334 2:+5129393 MsG0280006697.01.T01:CDS
TCAACAACAATATCTTAACA+GGG 0.698879 2:-5129651 None:intergenic
CTCCCTCGTCACGAACAAGG+TGG 0.705691 2:+5128401 MsG0280006697.01.T01:CDS
TGACGAGATTAGTAGCACCT+GGG 0.711329 2:-5128490 None:intergenic
GGAGTTGGCTACTATCAAGG+TGG 0.721822 2:+5129621 MsG0280006697.01.T01:CDS
AGAACCTGTATAGCATACTG+CGG 0.744810 2:-5129373 None:intergenic
TCAGTACCAATCATTCTCCG+GGG 0.748029 2:-5128572 None:intergenic
ATTGTAGCGAGGAATTGAGG+CGG 0.749278 2:+5128918 MsG0280006697.01.T01:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
! AAGAACAAGATAATTATGCT+TGG - Chr2:5128642-5128661 None:intergenic 25.0%
! TCAAACTTCTTATAACTCAT+CGG - Chr2:5129340-5129359 None:intergenic 25.0%
! TCAACAACAATATCTTAACA+GGG - Chr2:5129654-5129673 None:intergenic 25.0%
! TTCAACAACAATATCTTAAC+AGG - Chr2:5129655-5129674 None:intergenic 25.0%
AACTGAATGATCAGAAAGTT+AGG + Chr2:5129311-5129330 MsG0280006697.01.T01:CDS 30.0%
AATATTTCTTTCTCATTGGC+TGG - Chr2:5129757-5129776 None:intergenic 30.0%
ATAGAGAGTAAGCTTGATTT+CGG + Chr2:5129274-5129293 MsG0280006697.01.T01:CDS 30.0%
ATATACCCAGTTAACCTAAT+AGG - Chr2:5128794-5128813 None:intergenic 30.0%
ATCAACCTATTAGGTTAACT+GGG + Chr2:5128786-5128805 MsG0280006697.01.T01:CDS 30.0%
GACTGTTTATGCTAATTATG+CGG + Chr2:5129042-5129061 MsG0280006697.01.T01:CDS 30.0%
TTAGGTATATCGATCAAAAC+AGG - Chr2:5128731-5128750 None:intergenic 30.0%
TTGTTGAACAATCAACACTT+GGG + Chr2:5129667-5129686 MsG0280006697.01.T01:CDS 30.0%
! AAGAAACCTGTTTTGTATGT+TGG + Chr2:5128881-5128900 MsG0280006697.01.T01:CDS 30.0%
! AAGCTTTATGATGAATGTTC+AGG + Chr2:5129600-5129619 MsG0280006697.01.T01:CDS 30.0%
! ATATTTCTTTCTCATTGGCT+GGG - Chr2:5129756-5129775 None:intergenic 30.0%
!! AATCGAATTTTGGAGAGTAA+TGG + Chr2:5129250-5129269 MsG0280006697.01.T01:CDS 30.0%
!! ATCGAATTTTGGAGAGTAAT+GGG + Chr2:5129251-5129270 MsG0280006697.01.T01:CDS 30.0%
!! TTGATGTTGATGATATACCT+AGG + Chr2:5128660-5128679 MsG0280006697.01.T01:CDS 30.0%
!!! TGTTTTGATCGATATACCTA+AGG + Chr2:5128730-5128749 MsG0280006697.01.T01:CDS 30.0%
AATCGGGAAATGAATTGTTG+AGG - Chr2:5128236-5128255 None:intergenic 35.0%
ACAATGACATCAAGAAGGTA+GGG - Chr2:5129886-5129905 None:intergenic 35.0%
ACAGATTGTGAGGTTGTTAT+TGG + Chr2:5128853-5128872 MsG0280006697.01.T01:CDS 35.0%
ACCTGCAAACTTCAACATAT+TGG - Chr2:5129782-5129801 None:intergenic 35.0%
ATATTGATGCTGCTGAGATT+GGG + Chr2:5129167-5129186 MsG0280006697.01.T01:CDS 35.0%
CCTGCAAACTTCAACATATT+GGG - Chr2:5129781-5129800 None:intergenic 35.0%
CTGCAAACTTCAACATATTG+GGG - Chr2:5129780-5129799 None:intergenic 35.0%
GATCAACCTATTAGGTTAAC+TGG + Chr2:5128785-5128804 MsG0280006697.01.T01:CDS 35.0%
GATCTAGTTACCTCAACAAT+CGG - Chr2:5128614-5128633 None:intergenic 35.0%
GGGGAATATTTCTTTCTCAT+TGG - Chr2:5129761-5129780 None:intergenic 35.0%
GGTTAACTGGGTATATGAAT+AGG + Chr2:5128798-5128817 MsG0280006697.01.T01:CDS 35.0%
GTATATGAATAGGTTACCCA+AGG + Chr2:5128808-5128827 MsG0280006697.01.T01:CDS 35.0%
GTTGTTGAACAATCAACACT+TGG + Chr2:5129666-5129685 MsG0280006697.01.T01:CDS 35.0%
TACAATGACATCAAGAAGGT+AGG - Chr2:5129887-5129906 None:intergenic 35.0%
TATGATGAATGTTCAGGAGT+TGG + Chr2:5129606-5129625 MsG0280006697.01.T01:CDS 35.0%
TTCTTGACAAGCTTACCAAT+GGG + Chr2:5129392-5129411 MsG0280006697.01.T01:CDS 35.0%
! AAACCTGTTTTGTATGTTGG+TGG + Chr2:5128884-5128903 MsG0280006697.01.T01:CDS 35.0%
!! ATTTGAAGTTGGCTTTGAAG+GGG + Chr2:5129224-5129243 MsG0280006697.01.T01:CDS 35.0%
!! CTAATAGGTTGATCCCAATT+CGG - Chr2:5128779-5128798 None:intergenic 35.0%
!! GATTTGAAGTTGGCTTTGAA+GGG + Chr2:5129223-5129242 MsG0280006697.01.T01:CDS 35.0%
!! GCGTTTTTATTAGCTTCTAG+TGG + Chr2:5128695-5128714 MsG0280006697.01.T01:CDS 35.0%
!! TGATTCTGAAAACGTGGTTT+TGG - Chr2:5128103-5128122 None:intergenic 35.0%
!!! TTTTGGTTTGGAAGTGATTG+TGG - Chr2:5128086-5128105 None:intergenic 35.0%
AAATGAATTGTTGAGGTGGG+GGG - Chr2:5128229-5128248 None:intergenic 40.0%
AACAGGTTTCTGTTCCGAAT+TGG + Chr2:5128762-5128781 MsG0280006697.01.T01:CDS 40.0%
AACGAATTCTCATCCGAACT+AGG - Chr2:5129001-5129020 None:intergenic 40.0%
AACGCTTCATTCACTATCCT+AGG - Chr2:5128680-5128699 None:intergenic 40.0%
ACAGGTTTCTGTTCCGAATT+GGG + Chr2:5128763-5128782 MsG0280006697.01.T01:CDS 40.0%
ACCTAAGGATATTCAGCAAC+AGG + Chr2:5128745-5128764 MsG0280006697.01.T01:CDS 40.0%
ACCTGTTGCTAGTACTTTGA+TGG + Chr2:5128961-5128980 MsG0280006697.01.T01:CDS 40.0%
ACCTGTTGCTGAATATCCTT+AGG - Chr2:5128749-5128768 None:intergenic 40.0%
AGAACCTGTATAGCATACTG+CGG - Chr2:5129376-5129395 None:intergenic 40.0%
AGAATTCGTTGCAGATGCTT+GGG + Chr2:5129011-5129030 MsG0280006697.01.T01:CDS 40.0%
ATATCGATCAAAACAGGTCC+AGG - Chr2:5128725-5128744 None:intergenic 40.0%
ATCAGTACCAATCATTCTCC+GGG - Chr2:5128576-5128595 None:intergenic 40.0%
ATTCTCATCCGAACTAGGAT+AGG - Chr2:5128996-5129015 None:intergenic 40.0%
CAATATGAACAATCTTCGCC+CGG - Chr2:5129147-5129166 None:intergenic 40.0%
CAATGACATCAAGAAGGTAG+GGG - Chr2:5129885-5129904 None:intergenic 40.0%
CAGAAAATGTTAGATACCCC+TGG + Chr2:5129859-5129878 MsG0280006697.01.T01:CDS 40.0%
CATCAGTACCAATCATTCTC+CGG - Chr2:5128577-5128596 None:intergenic 40.0%
CCCAATATGTTGAAGTTTGC+AGG + Chr2:5129778-5129797 MsG0280006697.01.T01:CDS 40.0%
CCTGTTGCTAGTACTTTGAT+GGG + Chr2:5128962-5128981 MsG0280006697.01.T01:CDS 40.0%
CGAATTGGGATCAACCTATT+AGG + Chr2:5128777-5128796 MsG0280006697.01.T01:CDS 40.0%
CTGTTGCTAGTACTTTGATG+GGG + Chr2:5128963-5128982 MsG0280006697.01.T01:CDS 40.0%
GAAATGAATTGTTGAGGTGG+GGG - Chr2:5128230-5128249 None:intergenic 40.0%
GAACAATCAACACTTGGGTA+TGG + Chr2:5129672-5129691 MsG0280006697.01.T01:CDS 40.0%
GATATTGATGCTGCTGAGAT+TGG + Chr2:5129166-5129185 MsG0280006697.01.T01:CDS 40.0%
GATCCATTTGCAGGAATCAT+TGG - Chr2:5129931-5129950 None:intergenic 40.0%
GGAAATGAATTGTTGAGGTG+GGG - Chr2:5128231-5128250 None:intergenic 40.0%
GGGAAATGAATTGTTGAGGT+GGG - Chr2:5128232-5128251 None:intergenic 40.0%
GTTCTTGACAAGCTTACCAA+TGG + Chr2:5129391-5129410 MsG0280006697.01.T01:CDS 40.0%
TCAAGAAACTCCGATTGTTG+AGG + Chr2:5128601-5128620 MsG0280006697.01.T01:CDS 40.0%
TCTTGACAAGCTTACCAATG+GGG + Chr2:5129393-5129412 MsG0280006697.01.T01:CDS 40.0%
TGAATTGTAGCGAGGAATTG+AGG + Chr2:5128915-5128934 MsG0280006697.01.T01:CDS 40.0%
TGGTAGTTTGAATTGTAGCG+AGG + Chr2:5128907-5128926 MsG0280006697.01.T01:CDS 40.0%
TGTTCCAAATGTGCCTCTTT+CGG - Chr2:5128836-5128855 None:intergenic 40.0%
TGTTGGACAACATCAGATGT+GGG + Chr2:5129435-5129454 MsG0280006697.01.T01:CDS 40.0%
TGTTTGGGGAAGTGGAAAAT+GGG - Chr2:5128130-5128149 None:intergenic 40.0%
TTGCCAATGATTCCTGCAAA+TGG + Chr2:5129925-5129944 MsG0280006697.01.T01:CDS 40.0%
TTGTGGTGAAGATGAAGAGA+TGG - Chr2:5128069-5128088 None:intergenic 40.0%
TTTATAGGTACAAGAGACCG+AGG + Chr2:5129467-5129486 MsG0280006697.01.T01:CDS 40.0%
TTTGAGGATGTCATAACCGA+GGG + Chr2:5129952-5129971 MsG0280006697.01.T01:CDS 40.0%
! AGTGATCTTTTGCTTGCGTT+TGG + Chr2:5129073-5129092 MsG0280006697.01.T01:CDS 40.0%
! CACATTTGGAACAGATTGTG+AGG + Chr2:5128843-5128862 MsG0280006697.01.T01:CDS 40.0%
! GAAGGGGATCAATCGAATTT+TGG + Chr2:5129240-5129259 MsG0280006697.01.T01:CDS 40.0%
! GGTAAGTGATTCTGAAAACG+TGG - Chr2:5128109-5128128 None:intergenic 40.0%
! GTGATCTTTTGCTTGCGTTT+GGG + Chr2:5129074-5129093 MsG0280006697.01.T01:CDS 40.0%
! TGATCTTTTGCTTGCGTTTG+GGG + Chr2:5129075-5129094 MsG0280006697.01.T01:CDS 40.0%
! TTGGGGTTAGGTTTGATGAT+CGG + Chr2:5129092-5129111 MsG0280006697.01.T01:CDS 40.0%
! TTTTCTGAATCGCTGCTCTA+AGG - Chr2:5129846-5129865 None:intergenic 40.0%
!! GCTATCATAAGTACTGGTGT+TGG + Chr2:5129418-5129437 MsG0280006697.01.T01:CDS 40.0%
!! GGATTTGAAGTTGGCTTTGA+AGG + Chr2:5129222-5129241 MsG0280006697.01.T01:CDS 40.0%
!!! AGTGGTTTTTTGAGTAGGGT+TGG - Chr2:5128201-5128220 None:intergenic 40.0%
!!! ATGGGAGTGGTTTTTTGAGT+AGG - Chr2:5128206-5128225 None:intergenic 40.0%
!!! CTGAAAACGTGGTTTTGGTT+TGG - Chr2:5128098-5128117 None:intergenic 40.0%
!!! TGGGAGTGGTTTTTTGAGTA+GGG - Chr2:5128205-5128224 None:intergenic 40.0%
!!! TTTTTGAGTAGGGTTGGAGA+TGG - Chr2:5128195-5128214 None:intergenic 40.0%
AATAGAGCTCACACCTACCT+GGG + Chr2:5129727-5129746 MsG0280006697.01.T01:CDS 45.0%
ACAAATGTCTTCGCTTACCC+TGG + Chr2:5128320-5128339 MsG0280006697.01.T01:CDS 45.0%
ACTTATGATAGCCTCCCCAT+TGG - Chr2:5129410-5129429 None:intergenic 45.0%
AGTACTAGCAACAGGTACAC+CGG - Chr2:5128957-5128976 None:intergenic 45.0%
ATGTCAACCACAATAGCGTC+GGG - Chr2:5129568-5129587 None:intergenic 45.0%
ATTGTAGCGAGGAATTGAGG+CGG + Chr2:5128918-5128937 MsG0280006697.01.T01:CDS 45.0%
CCACCACCAACATACAAAAC+AGG - Chr2:5128890-5128909 None:intergenic 45.0%
CGGGAAATGAATTGTTGAGG+TGG - Chr2:5128233-5128252 None:intergenic 45.0%
CTCGGTTATGACATCCTCAA+AGG - Chr2:5129953-5129972 None:intergenic 45.0%
GAATAAGCAGCCTCATGTGT+CGG + Chr2:5129192-5129211 MsG0280006697.01.T01:CDS 45.0%
GAGAATTCGTTGCAGATGCT+TGG + Chr2:5129010-5129029 MsG0280006697.01.T01:CDS 45.0%
GAGAGTAAGCTTGATTTCGG+AGG + Chr2:5129277-5129296 MsG0280006697.01.T01:CDS 45.0%
GATGTCAACCACAATAGCGT+CGG - Chr2:5129569-5129588 None:intergenic 45.0%
GCGGTACAATGACATCAAGA+AGG - Chr2:5129891-5129910 None:intergenic 45.0%
GCTAGTACTTTGATGGGGTT+GGG + Chr2:5128968-5128987 MsG0280006697.01.T01:CDS 45.0%
GCTATTGTGGTTGACATCGA+TGG + Chr2:5129571-5129590 MsG0280006697.01.T01:CDS 45.0%
GTAAGCTTGATTTCGGAGGT+TGG + Chr2:5129281-5129300 MsG0280006697.01.T01:CDS 45.0%
GTGTTGGACAACATCAGATG+TGG + Chr2:5129434-5129453 MsG0280006697.01.T01:CDS 45.0%
GTGTTTGGGGAAGTGGAAAA+TGG - Chr2:5128131-5128150 None:intergenic 45.0%
GTTCCTCTTATTGCCATCAC+CGG + Chr2:5128542-5128561 MsG0280006697.01.T01:CDS 45.0%
GTTGGGTTCCTATCCTAGTT+CGG + Chr2:5128985-5129004 MsG0280006697.01.T01:CDS 45.0%
TCAGGAGTTGGCTACTATCA+AGG + Chr2:5129618-5129637 MsG0280006697.01.T01:CDS 45.0%
TCAGTACCAATCATTCTCCG+GGG - Chr2:5128575-5128594 None:intergenic 45.0%
TCCTCAAAGGATCCATTTGC+AGG - Chr2:5129940-5129959 None:intergenic 45.0%
TCCTGCAAATGGATCCTTTG+AGG + Chr2:5129936-5129955 MsG0280006697.01.T01:CDS 45.0%
TGACGAGATTAGTAGCACCT+GGG - Chr2:5128493-5128512 None:intergenic 45.0%
TGCTAGTACTTTGATGGGGT+TGG + Chr2:5128967-5128986 MsG0280006697.01.T01:CDS 45.0%
TGGTGAAGATGAAGAGATGG+TGG - Chr2:5128066-5128085 None:intergenic 45.0%
TTAGCTTCTAGTGGTAGACC+TGG + Chr2:5128704-5128723 MsG0280006697.01.T01:CDS 45.0%
TTGAAGTTTGCAGGTGCTTG+TGG + Chr2:5129787-5129806 MsG0280006697.01.T01:CDS 45.0%
! AGGTTTGATGATCGGGTTAC+TGG + Chr2:5129100-5129119 MsG0280006697.01.T01:CDS 45.0%
! CCCATCAAAGTACTAGCAAC+AGG - Chr2:5128965-5128984 None:intergenic 45.0%
! CTTTGAGGATGTCATAACCG+AGG + Chr2:5129951-5129970 MsG0280006697.01.T01:CDS 45.0%
! GGTTTGATGATCGGGTTACT+GGG + Chr2:5129101-5129120 MsG0280006697.01.T01:CDS 45.0%
! GGTTTGTGGGGATTTGAAGT+TGG + Chr2:5129213-5129232 MsG0280006697.01.T01:CDS 45.0%
! TGGGGTTAGGTTTGATGATC+GGG + Chr2:5129093-5129112 MsG0280006697.01.T01:CDS 45.0%
!! AAGCGGAGATTTTGAGAGAG+CGG - Chr2:5128172-5128191 None:intergenic 45.0%
!! AGGCGGTTTGTTGAGTTAAC+CGG + Chr2:5128935-5128954 MsG0280006697.01.T01:CDS 45.0%
!! CCTGTTTTGTATGTTGGTGG+TGG + Chr2:5128887-5128906 MsG0280006697.01.T01:CDS 45.0%
!! TGAGCTTGAAGGGAGTGTTT+GGG - Chr2:5128145-5128164 None:intergenic 45.0%
!! TGTGGGCTGCTCAGTTTTAT+AGG + Chr2:5129452-5129471 MsG0280006697.01.T01:CDS 45.0%
!! TTGAGCTTGAAGGGAGTGTT+TGG - Chr2:5128146-5128165 None:intergenic 45.0%
!! TTTTGCTTGCGTTTGGGGTT+AGG + Chr2:5129080-5129099 MsG0280006697.01.T01:CDS 45.0%
AATGTCTTCGCTTACCCTGG+CGG + Chr2:5128323-5128342 MsG0280006697.01.T01:CDS 50.0%
AATTGTTGAGGTGGGGGGAT+GGG - Chr2:5128224-5128243 None:intergenic 50.0%
ACCTGTATAGCATACTGCGG+AGG - Chr2:5129373-5129392 None:intergenic 50.0%
ACTTATCCTGCCATCACCCT+CGG - Chr2:5129971-5129990 None:intergenic 50.0%
ACTTGGGTATGGTTGTCCAG+TGG + Chr2:5129683-5129702 MsG0280006697.01.T01:CDS 50.0%
AGTAGGGTTGGAGATGGAAG+CGG - Chr2:5128189-5128208 None:intergenic 50.0%
ATTCCACCTTGTTCGTGACG+AGG - Chr2:5128407-5128426 None:intergenic 50.0%
CAATAGAGCTCACACCTACC+TGG + Chr2:5129726-5129745 MsG0280006697.01.T01:CDS 50.0%
CAGGTAGGTGTGAGCTCTAT+TGG - Chr2:5129728-5129747 None:intergenic 50.0%
CGCTATGGGATTTGGATTGC+CGG + Chr2:5129516-5129535 MsG0280006697.01.T01:CDS 50.0%
CTGACGAGATTAGTAGCACC+TGG - Chr2:5128494-5128513 None:intergenic 50.0%
CTTGGGTATGGTTGTCCAGT+GGG + Chr2:5129684-5129703 MsG0280006697.01.T01:CDS 50.0%
GATGTCATAACCGAGGGTGA+TGG + Chr2:5129958-5129977 MsG0280006697.01.T01:CDS 50.0%
GGAGTTGGCTACTATCAAGG+TGG + Chr2:5129621-5129640 MsG0280006697.01.T01:CDS 50.0%
GGCAACACATGCTCTTGATG+CGG - Chr2:5129910-5129929 None:intergenic 50.0%
GGGGAGGCTATCATAAGTAC+TGG + Chr2:5129412-5129431 MsG0280006697.01.T01:CDS 50.0%
GTGGTTGACATCGATGGTGA+TGG + Chr2:5129577-5129596 MsG0280006697.01.T01:CDS 50.0%
TATAGAACCGATCCTCCCAC+TGG - Chr2:5129702-5129721 None:intergenic 50.0%
TCCTCCGCAGTATGCTATAC+AGG + Chr2:5129369-5129388 MsG0280006697.01.T01:CDS 50.0%
TCTTATTGCCATCACCGGTC+AGG + Chr2:5128547-5128566 MsG0280006697.01.T01:CDS 50.0%
TGACAAGCTTACCAATGGGG+AGG + Chr2:5129396-5129415 MsG0280006697.01.T01:CDS 50.0%
TGCAGATGCTTGGGATGCAT+GGG + Chr2:5129020-5129039 MsG0280006697.01.T01:CDS 50.0%
TGCAGGTGCTTGTGGTATAC+CGG + Chr2:5129795-5129814 MsG0280006697.01.T01:CDS 50.0%
TTCCACCTTGTTCGTGACGA+GGG - Chr2:5128406-5128425 None:intergenic 50.0%
TTGCAGATGCTTGGGATGCA+TGG + Chr2:5129019-5129038 MsG0280006697.01.T01:CDS 50.0%
! AACCACAATAGCGTCGGGAT+TGG - Chr2:5129563-5129582 None:intergenic 50.0%
! AGAGATGGTGGTTGTGAACG+CGG - Chr2:5128054-5128073 None:intergenic 50.0%
! AGGATATCTGCGCCTTTTCG+GGG - Chr2:5128272-5128291 None:intergenic 50.0%
! CGAGGATATCTGCGCCTTTT+CGG - Chr2:5128274-5128293 None:intergenic 50.0%
! GAGGATATCTGCGCCTTTTC+GGG - Chr2:5128273-5128292 None:intergenic 50.0%
! TGACCGGTGATGGCAATAAG+AGG - Chr2:5128548-5128567 None:intergenic 50.0%
! TGGTTGACTTCTGCTGGTCT+TGG + Chr2:5129493-5129512 MsG0280006697.01.T01:CDS 50.0%
!! AGCCTCATGTGTCGGTTTGT+GGG + Chr2:5129200-5129219 MsG0280006697.01.T01:CDS 50.0%
!! GAGCTTGAAGGGAGTGTTTG+GGG - Chr2:5128144-5128163 None:intergenic 50.0%
!! GGTGCTACTAATCTCGTCAG+TGG + Chr2:5128494-5128513 MsG0280006697.01.T01:CDS 50.0%
AAGTGGCGATGCAGACACCA+GGG - Chr2:5128466-5128485 None:intergenic 55.0%
ACATCAAGAAGGTAGGGGCC+AGG - Chr2:5129880-5129899 None:intergenic 55.0%
ACGAGGGAGGACGTTACGAA+TGG - Chr2:5128390-5128409 None:intergenic 55.0%
AGAGCGGTGGTTGAGCTTGA+AGG - Chr2:5128156-5128175 None:intergenic 55.0%
AGGGAGGACGTTACGAATGG+CGG - Chr2:5128387-5128406 None:intergenic 55.0%
AGGTGGAATATTCGCTGCCG+AGG + Chr2:5128418-5128437 MsG0280006697.01.T01:CDS 55.0%
ATCAAGAAGGTAGGGGCCAG+GGG - Chr2:5129878-5129897 None:intergenic 55.0%
ATTGGCAACAGCAGCTCCCA+TGG - Chr2:5129545-5129564 None:intergenic 55.0%
CAGGTTCCCCGGAGAATGAT+TGG + Chr2:5128566-5128585 MsG0280006697.01.T01:CDS 55.0%
CATCAAGAAGGTAGGGGCCA+GGG - Chr2:5129879-5129898 None:intergenic 55.0%
CTCTTTGTCACACGAGCTGC+CGG - Chr2:5129817-5129836 None:intergenic 55.0%
GAATTGTTGAGGTGGGGGGA+TGG - Chr2:5128225-5128244 None:intergenic 55.0%
GAGATTAGTAGCACCTGGGC+CGG - Chr2:5128489-5128508 None:intergenic 55.0%
GAGCGGTGGTTGAGCTTGAA+GGG - Chr2:5128155-5128174 None:intergenic 55.0%
GCAGAAGTCAACCACTGCCT+CGG - Chr2:5129487-5129506 None:intergenic 55.0%
GGCAGCTCGTGTGACAAAGA+GGG + Chr2:5129816-5129835 MsG0280006697.01.T01:CDS 55.0%
GGGGTTCGTTAGGGGCAAAT+CGG - Chr2:5128253-5128272 None:intergenic 55.0%
GGGTTCGTTAGGGGCAAATC+GGG - Chr2:5128252-5128271 None:intergenic 55.0%
GGTCTTGGCGCTATGGGATT+TGG + Chr2:5129508-5129527 MsG0280006697.01.T01:CDS 55.0%
GGTGGAATATTCGCTGCCGA+GGG + Chr2:5128419-5128438 MsG0280006697.01.T01:CDS 55.0%
TCCCCACAAACCGACACATG+AGG - Chr2:5129205-5129224 None:intergenic 55.0%
TCGGGTTACTGGGAAGCTTG+AGG + Chr2:5129111-5129130 MsG0280006697.01.T01:CDS 55.0%
TGCCAATCCCGACGCTATTG+TGG + Chr2:5129558-5129577 MsG0280006697.01.T01:CDS 55.0%
TGGTTGTCCAGTGGGAGGAT+CGG + Chr2:5129692-5129711 MsG0280006697.01.T01:CDS 55.0%
! AGCTTGAGGCTTTTGCGAGC+CGG + Chr2:5129125-5129144 MsG0280006697.01.T01:CDS 55.0%
! AGGCAGTGGTTGACTTCTGC+TGG + Chr2:5129487-5129506 MsG0280006697.01.T01:CDS 55.0%
! ATTTGGATTGCCGGCTGCCA+TGG + Chr2:5129525-5129544 MsG0280006697.01.T01:CDS 55.0%
! GAACGCGGTTTTTGCAGCAG+TGG - Chr2:5128039-5128058 None:intergenic 55.0%
! GGCACCGAAAGAGGCACATT+TGG + Chr2:5128829-5128848 MsG0280006697.01.T01:CDS 55.0%
! GTCGAAGCACTCGAACGTCA+GGG + Chr2:5128293-5128312 MsG0280006697.01.T01:CDS 55.0%
! TCATAACCGAGGGTGATGGC+AGG + Chr2:5129962-5129981 MsG0280006697.01.T01:CDS 55.0%
! TTTGGATTGCCGGCTGCCAT+GGG + Chr2:5129526-5129545 MsG0280006697.01.T01:CDS 55.0%
!! ATGTGCCTCTTTCGGTGCCT+TGG - Chr2:5128828-5128847 None:intergenic 55.0%
!! ATTTCCATTGAAGCGCCGCC+AGG - Chr2:5128341-5128360 None:intergenic 55.0%
!! CAGCCTCATGTGTCGGTTTG+TGG + Chr2:5129199-5129218 MsG0280006697.01.T01:CDS 55.0%
!! CGCCTTTTCGGGGTTCGTTA+GGG - Chr2:5128262-5128281 None:intergenic 55.0%
!! CGGAGATTTTGAGAGAGCGG+TGG - Chr2:5128169-5128188 None:intergenic 55.0%
!! GAAGGGAGTGTTTGGGGAAG+TGG - Chr2:5128138-5128157 None:intergenic 55.0%
!! GCCTCATGTGTCGGTTTGTG+GGG + Chr2:5129201-5129220 MsG0280006697.01.T01:CDS 55.0%
!! GCCTTTTCGGGGTTCGTTAG+GGG - Chr2:5128261-5128280 None:intergenic 55.0%
!! GTTACCCAAGGCACCGAAAG+AGG + Chr2:5128820-5128839 MsG0280006697.01.T01:CDS 55.0%
!! TCTGCTGGTCTTGGCGCTAT+GGG + Chr2:5129502-5129521 MsG0280006697.01.T01:CDS 55.0%
!! TGTGCCTCTTTCGGTGCCTT+GGG - Chr2:5128827-5128846 None:intergenic 55.0%
!! TTCTGCTGGTCTTGGCGCTA+TGG + Chr2:5129501-5129520 MsG0280006697.01.T01:CDS 55.0%
!! TTTCCATTGAAGCGCCGCCA+GGG - Chr2:5128340-5128359 None:intergenic 55.0%
ATTGGCTGGGTCTCCCAGGT+AGG - Chr2:5129743-5129762 None:intergenic 60.0%
CACCTTGTTCGTGACGAGGG+AGG - Chr2:5128403-5128422 None:intergenic 60.0%
CATTCTCCGGGGAACCTGAC+CGG - Chr2:5128564-5128583 None:intergenic 60.0%
CGGCAGCTCGTGTGACAAAG+AGG + Chr2:5129815-5129834 MsG0280006697.01.T01:CDS 60.0%
CTCCCTCGTCACGAACAAGG+TGG + Chr2:5128401-5128420 MsG0280006697.01.T01:CDS 60.0%
GAAGTGGCGATGCAGACACC+AGG - Chr2:5128467-5128486 None:intergenic 60.0%
GACGTTCGAGTGCTTCGACG+AGG - Chr2:5128292-5128311 None:intergenic 60.0%
GAGGACGTTACGAATGGCGG+TGG - Chr2:5128384-5128403 None:intergenic 60.0%
GAGGGTTACGCTCGTTCCTC+CGG + Chr2:5128437-5128456 MsG0280006697.01.T01:CDS 60.0%
GATGCAGACACCAGGGAGAC+CGG - Chr2:5128459-5128478 None:intergenic 60.0%
GCCCCTAACGAACCCCGAAA+AGG + Chr2:5128257-5128276 MsG0280006697.01.T01:CDS 60.0%
GGAGGAACGAGCGTAACCCT+CGG - Chr2:5128438-5128457 None:intergenic 60.0%
GGGTATGGTTGTCCAGTGGG+AGG + Chr2:5129687-5129706 MsG0280006697.01.T01:CDS 60.0%
GGTACAAGAGACCGAGGCAG+TGG + Chr2:5129473-5129492 MsG0280006697.01.T01:CDS 60.0%
GGTGTCTGCATCGCCACTTC+CGG + Chr2:5128467-5128486 MsG0280006697.01.T01:CDS 60.0%
GTCCTCCCTCGTCACGAACA+AGG + Chr2:5128398-5128417 MsG0280006697.01.T01:CDS 60.0%
TTACCCTGGCGGCGCTTCAA+TGG + Chr2:5128334-5128353 MsG0280006697.01.T01:CDS 60.0%
! CGTCGAAGCACTCGAACGTC+AGG + Chr2:5128292-5128311 MsG0280006697.01.T01:CDS 60.0%
! GCTTGAGGCTTTTGCGAGCC+GGG + Chr2:5129126-5129145 MsG0280006697.01.T01:CDS 60.0%
! TCTCATTGGCTGGGTCTCCC+AGG - Chr2:5129747-5129766 None:intergenic 60.0%
!! GCGCCTTTTCGGGGTTCGTT+AGG - Chr2:5128263-5128282 None:intergenic 60.0%
ACAGCAGCTCCCATGGCAGC+CGG - Chr2:5129538-5129557 None:intergenic 65.0%
AGTAGCACCTGGGCCGGAAG+TGG - Chr2:5128483-5128502 None:intergenic 65.0%
CCATCACCGGTCAGGTTCCC+CGG + Chr2:5128555-5128574 MsG0280006697.01.T01:CDS 65.0%
TTGAGGTGGGGGGATGGGAG+TGG - Chr2:5128219-5128238 None:intergenic 65.0%
CCGGGGAACCTGACCGGTGA+TGG - Chr2:5128558-5128577 None:intergenic 70.0%
GCAGACACCAGGGAGACCGG+AGG - Chr2:5128456-5128475 None:intergenic 70.0%
GCTCGTTCCTCCGGTCTCCC+TGG + Chr2:5128446-5128465 MsG0280006697.01.T01:CDS 70.0%
TGCATCGCCACTTCCGGCCC+AGG + Chr2:5128473-5128492 MsG0280006697.01.T01:CDS 70.0%
Chromosome Type Strat End Strand Name
Chr2 gene 5128029 5129996 5128029 ID=MsG0280006697.01;Name=MsG0280006697.01
Chr2 mRNA 5128029 5129996 5128029 ID=MsG0280006697.01.T01;Parent=MsG0280006697.01;Name=MsG0280006697.01.T01;_AED=0.47;_eAED=0.47;_QI=0|-1|0|1|-1|1|1|0|655
Chr2 exon 5128029 5129996 5128029 ID=MsG0280006697.01.T01:exon:1948;Parent=MsG0280006697.01.T01
Chr2 CDS 5128029 5129996 5128029 ID=MsG0280006697.01.T01:cds;Parent=MsG0280006697.01.T01
Gene Sequence

>MsG0280006697.01.T01

ATGGCAGCCACTGCTGCAAAAACCGCGTTCACAACCACCATCTCTTCATCTTCACCACAATCACTTCCAAACCAAAACCACGTTTTCAGAATCACTTACCCATTTTCCACTTCCCCAAACACTCCCTTCAAGCTCAACCACCGCTCTCTCAAAATCTCCGCTTCCATCTCCAACCCTACTCAAAAAACCACTCCCATCCCCCCACCTCAACAATTCATTTCCCGATTTGCCCCTAACGAACCCCGAAAAGGCGCAGATATCCTCGTCGAAGCACTCGAACGTCAGGGAGTTACAAATGTCTTCGCTTACCCTGGCGGCGCTTCAATGGAAATTCATCAAGCACTCACGCGCTCCACCGCCATTCGTAACGTCCTCCCTCGTCACGAACAAGGTGGAATATTCGCTGCCGAGGGTTACGCTCGTTCCTCCGGTCTCCCTGGTGTCTGCATCGCCACTTCCGGCCCAGGTGCTACTAATCTCGTCAGTGGACTTGCTGATGCTATGCTTGACAGTGTTCCTCTTATTGCCATCACCGGTCAGGTTCCCCGGAGAATGATTGGTACTGATGCTTTTCAAGAAACTCCGATTGTTGAGGTAACTAGATCAATCACCAAGCATAATTATCTTGTTCTTGATGTTGATGATATACCTAGGATAGTGAATGAAGCGTTTTTATTAGCTTCTAGTGGTAGACCTGGACCTGTTTTGATCGATATACCTAAGGATATTCAGCAACAGGTTTCTGTTCCGAATTGGGATCAACCTATTAGGTTAACTGGGTATATGAATAGGTTACCCAAGGCACCGAAAGAGGCACATTTGGAACAGATTGTGAGGTTGTTATTGGAGTCTAAGAAACCTGTTTTGTATGTTGGTGGTGGTAGTTTGAATTGTAGCGAGGAATTGAGGCGGTTTGTTGAGTTAACCGGTGTACCTGTTGCTAGTACTTTGATGGGGTTGGGTTCCTATCCTAGTTCGGATGAGAATTCGTTGCAGATGCTTGGGATGCATGGGACTGTTTATGCTAATTATGCGGTTGATAAGAGTGATCTTTTGCTTGCGTTTGGGGTTAGGTTTGATGATCGGGTTACTGGGAAGCTTGAGGCTTTTGCGAGCCGGGCGAAGATTGTTCATATTGATATTGATGCTGCTGAGATTGGGAAGAATAAGCAGCCTCATGTGTCGGTTTGTGGGGATTTGAAGTTGGCTTTGAAGGGGATCAATCGAATTTTGGAGAGTAATGGGATAGAGAGTAAGCTTGATTTCGGAGGTTGGAGAGAAGAACTGAATGATCAGAAAGTTAGGTTTCCGATGAGTTATAAGAAGTTTGATGAAGCTATTCCTCCGCAGTATGCTATACAGGTTCTTGACAAGCTTACCAATGGGGAGGCTATCATAAGTACTGGTGTTGGACAACATCAGATGTGGGCTGCTCAGTTTTATAGGTACAAGAGACCGAGGCAGTGGTTGACTTCTGCTGGTCTTGGCGCTATGGGATTTGGATTGCCGGCTGCCATGGGAGCTGCTGTTGCCAATCCCGACGCTATTGTGGTTGACATCGATGGTGATGGAAGCTTTATGATGAATGTTCAGGAGTTGGCTACTATCAAGGTGGAGAATCTCCCTGTTAAGATATTGTTGTTGAACAATCAACACTTGGGTATGGTTGTCCAGTGGGAGGATCGGTTCTATAAAGCCAATAGAGCTCACACCTACCTGGGAGACCCAGCCAATGAGAAAGAAATATTCCCCAATATGTTGAAGTTTGCAGGTGCTTGTGGTATACCGGCAGCTCGTGTGACAAAGAGGGCAGACCTTAGAGCAGCGATTCAGAAAATGTTAGATACCCCTGGCCCCTACCTTCTTGATGTCATTGTACCGCATCAAGAGCATGTGTTGCCAATGATTCCTGCAAATGGATCCTTTGAGGATGTCATAACCGAGGGTGATGGCAGGATAAGTTACTGA
Protein sequence

>MsG0280006697.01.T01

MAATAAKTAFTTTISSSSPQSLPNQNHVFRITYPFSTSPNTPFKLNHRSLKISASISNPTQKTTPIPPPQQFISRFAPNEPRKGADILVEALERQGVTNVFAYPGGASMEIHQALTRSTAIRNVLPRHEQGGIFAAEGYARSSGLPGVCIATSGPGATNLVSGLADAMLDSVPLIAITGQVPRRMIGTDAFQETPIVEVTRSITKHNYLVLDVDDIPRIVNEAFLLASSGRPGPVLIDIPKDIQQQVSVPNWDQPIRLTGYMNRLPKAPKEAHLEQIVRLLLESKKPVLYVGGGSLNCSEELRRFVELTGVPVASTLMGLGSYPSSDENSLQMLGMHGTVYANYAVDKSDLLLAFGVRFDDRVTGKLEAFASRAKIVHIDIDAAEIGKNKQPHVSVCGDLKLALKGINRILESNGIESKLDFGGWREELNDQKVRFPMSYKKFDEAIPPQYAIQVLDKLTNGEAIISTGVGQHQMWAAQFYRYKRPRQWLTSAGLGAMGFGLPAAMGAAVANPDAIVVDIDGDGSFMMNVQELATIKVENLPVKILLLNNQHLGMVVQWEDRFYKANRAHTYLGDPANEKEIFPNMLKFAGACGIPAARVTKRADLRAAIQKMLDTPGPYLLDVIVPHQEHVLPMIPANGSFEDVITEGDGRISY*