AlfalfaGEDB | MsG0280006705.01

M. sativa cultivar ZhongmuNo.1 / MsG0280006705.01

KEGG: -
GO: -
PFAM: -

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0280006705.01.T01	XP_003593538.1	99.174	121	1	0	1	121	1	121	2.89E-81	251

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0280006705.01.T01	G7IP27	99.174	121	1	0	1	121	1	121	1.38e-81	251

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TFs/TRs:

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Gene ID	Type	Classification
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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
MsG0180005873.01	MsG0280006705.01	0.867797	1.049725e-65	3.711537e-62
MsG0280006705.01	MsG0280009932.01	0.802636	5.107298e-49	2.514431e-46
MsG0280006705.01	MsG0380015972.01	0.822772	1.981138e-53	1.674105e-50
MsG0280006705.01	MsG0380017868.01	0.852812	3.609965e-61	7.637463e-58
MsG0280006705.01	MsG0480021238.01	0.813775	2.157350e-51	1.421733e-48
MsG0280006705.01	MsG0480023188.01	0.821799	3.331042e-53	2.737791e-50
MsG0280006705.01	MsG0880046832.01	0.812736	3.648069e-51	2.337822e-48

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0280006705.01.T01	MTR_2g013220	99.174	121	1	0	1	121	1	121	3.49e-85	251
MsG0280006705.01.T01	MTR_4g088980	60.194	103	35	4	21	121	9	107	7.39e-25	95.9

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
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Find 43 sgRNAs with CRISPR-Local

Find 44 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AACGATAACGGAAACGGTTA+TGG	0.352071	2:-5189745	MsG0280006705.01.T01:CDS
AACGGAGAAGGAGAGTAACC+AGG	0.644232	2:+5189793	None:intergenic
AACGGGAACGATAACGGAAA+CGG	0.554690	2:-5189751	MsG0280006705.01.T01:CDS
AACGGTTATGGTGATGATGA+CGG	0.705580	2:-5189733	MsG0280006705.01.T01:CDS
AAGGTTACGCTCTTCGTGAA+TGG	0.527926	2:-5189654	MsG0280006705.01.T01:CDS
AATCGGTTACTGTAGAAAAC+GGG	0.471773	2:-5189768	MsG0280006705.01.T01:CDS
ACCTGGTGAGATGGAGTCGG+AGG	0.613781	2:-5189677	MsG0280006705.01.T01:CDS
ACGCTCTTCGTGAATGGCGC+CGG	0.553734	2:-5189648	MsG0280006705.01.T01:CDS
ACTACTTCACCGGAGATCTA+CGG	0.578559	2:-5189832	MsG0280006705.01.T01:CDS
AGAAGGAGAGTAACCAGGAT+TGG	0.477559	2:+5189798	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AATCGGTTACTGTAGAAAAC+GGG	-	Chr2:5189865-5189884	MsG0280006705.01.T01:CDS	35.0%
GAATCGGTTACTGTAGAAAA+CGG	-	Chr2:5189864-5189883	MsG0280006705.01.T01:CDS	35.0%
GTAGAAAACGGGAACGATAA+CGG	-	Chr2:5189876-5189895	MsG0280006705.01.T01:CDS	40.0%
AAGGTTACGCTCTTCGTGAA+TGG	-	Chr2:5189979-5189998	MsG0280006705.01.T01:CDS	45.0%
ACTACTTCACCGGAGATCTA+CGG	-	Chr2:5189801-5189820	MsG0280006705.01.T01:CDS	45.0%
AGAAGGAGAGTAACCAGGAT+TGG	+	Chr2:5189838-5189857	None:intergenic	45.0%
ATTGGAGTAACCACCGTAAC+CGG	+	Chr2:5189742-5189761	None:intergenic	45.0%
CTCTCCTTCTCCGTTTGAAT+CGG	-	Chr2:5189848-5189867	MsG0280006705.01.T01:CDS	45.0%
GAAGGAGAGTAACCAGGATT+GGG	+	Chr2:5189837-5189856	None:intergenic	45.0%
GGTGGTTACTCCAATTTCGA+CGG	-	Chr2:5189747-5189766	MsG0280006705.01.T01:CDS	45.0%

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Chromosome	Type	Strat	End	Strand	Name
Chr2	gene	5189645	5190010	5189645	ID=MsG0280006705.01;Name=MsG0280006705.01
Chr2	mRNA	5189645	5190010	5189645	ID=MsG0280006705.01.T01;Parent=MsG0280006705.01;Name=MsG0280006705.01.T01;_AED=0.50;_eAED=0.50;_QI=0\|-1\|0\|1\|-1\|1\|1\|0\|121
Chr2	exon	5189645	5190010	5189645	ID=MsG0280006705.01.T01:exon:36263;Parent=MsG0280006705.01.T01
Chr2	CDS	5189645	5190010	5189645	ID=MsG0280006705.01.T01:cds;Parent=MsG0280006705.01.T01

Gene Sequence	>MsG0280006705.01.T01 ATGTCTTCTTCCTTCGACGCTTTCACTGACGACTTGAACGTCAACTCATCTTCTCCTCACAACTTCGCCGCCTCCGATCAAGACGACACCTTCTCCGGTTACGGTGGTTACTCCAATTTCGACGGCGATGTCACCGTCGATCACTCCGCCGCTGAAACTACTTCACCGGAGATCTACGGATTCAGTGATCCCAATCCTGGTTACTCTCCTTCTCCGTTTGAATCGGTTACTGTAGAAAACGGGAACGATAACGGAAACGGTTATGGTGATGATGACGGTGTTTTTGTTTCTGATGGTCCGATCCTTCCTCCACCTGGTGAGATGGAGTCGGAGGAAGGTTACGCTCTTCGTGAATGGCGCCGGTAA
Protein sequence	>MsG0280006705.01.T01 MSSSFDAFTDDLNVNSSSPHNFAASDQDDTFSGYGGYSNFDGDVTVDHSAAETTSPEIYGFSDPNPGYSPSPFESVTVENGNDNGNGYGDDDGVFVSDGPILPPPGEMESEEGYALREWRR*