AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0280007019.01

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0280007019.01.T02 MTR_2g019190 94.776 134 2 3 1 130 1 133 2.95e-87 250
MsG0280007019.01.T02 MTR_8g107300 73.684 133 14 6 1 129 1 116 2.18e-56 171
MsG0280007019.01.T02 MTR_8g107300 80.435 92 7 2 38 129 1 81 8.01e-45 141
MsG0280007019.01.T04 MTR_2g019190 83.158 95 4 1 1 83 40 134 2.31e-50 154
MsG0280007019.01.T04 MTR_8g107300 87.654 81 10 0 1 81 1 81 1.44e-48 148
MsG0280007019.01.T04 MTR_8g107300 87.654 81 10 0 1 81 36 116 4.65e-48 148
MsG0280007019.01.T01 MTR_2g019190 81.481 135 6 3 1 117 1 134 1.86e-68 202
MsG0280007019.01.T01 MTR_8g107300 77.686 121 16 3 1 115 1 116 3.78e-60 180
MsG0280007019.01.T01 MTR_8g107300 87.654 81 10 0 35 115 1 81 6.41e-48 148
MsG0280007019.01.T03 MTR_2g019190 88.060 134 7 2 1 125 1 134 4.14e-78 226
MsG0280007019.01.T03 MTR_8g107300 72.727 132 11 6 1 123 1 116 4.97e-54 165
MsG0280007019.01.T03 MTR_8g107300 80.435 92 7 2 32 123 1 81 9.35e-45 140
MsG0280007019.01.T05 MTR_2g019190 96.809 94 2 1 1 93 40 133 1.04e-61 184
MsG0280007019.01.T05 MTR_8g107300 80.435 92 7 2 1 92 1 81 1.85e-45 141
MsG0280007019.01.T05 MTR_8g107300 80.435 92 7 2 1 92 36 116 6.91e-45 140
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0280007019.01.T02 AT1G30135 44.697 132 65 5 1 130 3 128 3.85e-26 95.5
MsG0280007019.01.T02 AT2G34600 41.353 133 70 6 1 131 20 146 2.51e-18 75.9
MsG0280007019.01.T04 AT2G34600 49.462 93 31 5 4 83 57 146 1.52e-18 74.7
MsG0280007019.01.T04 AT1G30135 46.667 90 34 4 4 82 42 128 1.49e-17 71.6
MsG0280007019.01.T01 AT1G30135 42.636 129 58 6 1 116 3 128 4.01e-23 87.4
MsG0280007019.01.T01 AT2G34600 43.846 130 57 5 1 117 20 146 4.04e-20 80.1
MsG0280007019.01.T03 AT1G30135 45.802 131 59 5 1 124 3 128 1.72e-25 93.6
MsG0280007019.01.T03 AT2G34600 43.182 132 63 7 1 125 20 146 5.61e-18 75.1
MsG0280007019.01.T05 AT1G30135 50.000 92 39 4 4 93 42 128 3.03e-20 79.0
MsG0280007019.01.T05 AT2G34600 48.421 95 40 5 4 94 57 146 4.08e-18 73.9

Find 14 sgRNAs with CRISPR-Local

Find 180 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTGCTTACATGGGGTGATTT+TGG 0.252416 2:+9505410 None:intergenic
GATGATATGGAGATGCTTCT+TGG 0.331037 2:+9502111 None:intergenic
TACTGATGTCACAGAGCTTC+AGG 0.335972 2:-9505190 MsG0280007019.01.T01:intron
AATTGTTGTATGGAGGAAAA+AGG 0.349461 2:+9505443 None:intergenic
CATCTTGCCATCGTAGAAAA+TGG 0.392349 2:+9505218 None:intergenic
TCTACAAAAGAGAAAGAATA+GGG 0.475189 2:-9502135 MsG0280007019.01.T01:CDS
TTCTACAAAAGAGAAAGAAT+AGG 0.501770 2:-9502136 MsG0280007019.01.T01:CDS
TGATTGCTAGAATTGTTGTA+TGG 0.511394 2:+9505433 None:intergenic
CCATGAAAAGATCTTTGCAA+AGG 0.529406 2:-9502160 MsG0280007019.01.T01:CDS
TCAATAAAGGGTAGAAGAAG+AGG 0.532802 2:-9505286 MsG0280007019.01.T01:intron
GATGAGGAGGAATTGCAACT+TGG 0.553645 2:-9505473 MsG0280007019.01.T01:CDS
AAAATACAGAAAAGATGAGG+AGG 0.570322 2:-9505486 None:intergenic
TTGCTAGAATTGTTGTATGG+AGG 0.628547 2:+9505436 None:intergenic
CCATCGTAGAAAATGGTCAG+TGG 0.671131 2:+9505225 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AGTATAAAATAGTATAAATT+TGG + Chr2:9504382-9504401 None:intergenic 10.0%
!! TAAATTTATATCAAGTATTT+AGG + Chr2:9503960-9503979 None:intergenic 10.0%
!!! ATAAATAAATATAGATTTTG+AGG - Chr2:9503998-9504017 MsG0280007019.01.T01:intron 10.0%
!!! TAATAAGATAATAATTTTTC+GGG + Chr2:9503509-9503528 None:intergenic 10.0%
!!! TATTTTGAAATAATTTGAAA+TGG + Chr2:9502978-9502997 None:intergenic 10.0%
!!! TCATTTTTTTTTTTGTTTTT+TGG - Chr2:9505355-9505374 MsG0280007019.01.T01:intron 10.0%
!!! TTATTTTAACATTGATTTAA+CGG - Chr2:9502748-9502767 MsG0280007019.01.T01:intron 10.0%
!!! TTTAAAATAATAAATTTGTC+CGG + Chr2:9503575-9503594 None:intergenic 10.0%
!! AAAAAATTAACAAATTCATC+CGG + Chr2:9504315-9504334 None:intergenic 15.0%
!! AAACCTTAAAAAGAAAATTA+AGG - Chr2:9504553-9504572 MsG0280007019.01.T01:intron 15.0%
!! ATTATGGTTTCAAATATTAA+AGG - Chr2:9505383-9505402 MsG0280007019.01.T01:intron 15.0%
!! TCTAAATTAATAAATTTCTC+CGG + Chr2:9503176-9503195 None:intergenic 15.0%
!!! AAAACTGATTCAAATTAAAT+AGG + Chr2:9505277-9505296 None:intergenic 15.0%
!!! AAACTCTTTAATTTAATACT+AGG + Chr2:9503613-9503632 None:intergenic 15.0%
!!! AGTAAATGACTTTTTTTTTT+TGG + Chr2:9503044-9503063 None:intergenic 15.0%
!!! AGTTTTTCAATTTTTTACAT+TGG - Chr2:9503537-9503556 MsG0280007019.01.T01:intron 15.0%
!!! ATATAAATTTAGTTTTCATG+AGG - Chr2:9503969-9503988 MsG0280007019.01.T01:intron 15.0%
!!! TATCCTTAATTTTCTTTTTA+AGG + Chr2:9504559-9504578 None:intergenic 15.0%
!!! TCATTTTTGTTAAAAAAGTT+TGG - Chr2:9504706-9504725 MsG0280007019.01.T01:intron 15.0%
!!! TTGTTAATTTGTTCAATAAA+GGG - Chr2:9502025-9502044 MsG0280007019.01.T03:three_prime_UTR 15.0%
!!! TTTGTTAATTTGTTCAATAA+AGG - Chr2:9502024-9502043 MsG0280007019.01.T03:three_prime_UTR 15.0%
!! AAAAATACAAAGTCATATCA+AGG + Chr2:9504289-9504308 None:intergenic 20.0%
!! AAAATACAAAGTCATATCAA+GGG + Chr2:9504288-9504307 None:intergenic 20.0%
!! AATTAACTGCTAGAAATATT+AGG + Chr2:9504443-9504462 None:intergenic 20.0%
!! CTATAAAGTTTGAAAATTCT+TGG + Chr2:9504820-9504839 None:intergenic 20.0%
!! TAAATTAATAATGTCATGAC+CGG - Chr2:9503154-9503173 MsG0280007019.01.T01:intron 20.0%
!!! AAAACAAATTTTGCTTACAT+GGG + Chr2:9501926-9501945 None:intergenic 20.0%
!!! AAATGACTTTTTTTTTTTGG+TGG + Chr2:9503041-9503060 None:intergenic 20.0%
!!! ATGACTTTGTATTTTTTTAC+CGG - Chr2:9504293-9504312 MsG0280007019.01.T01:intron 20.0%
!!! CATAAAAAGTCACAATTTTA+AGG + Chr2:9502819-9502838 None:intergenic 20.0%
!!! TAATTGTTTTGGTTTTAGTT+TGG - Chr2:9502387-9502406 MsG0280007019.01.T01:intron 20.0%
!!! TGCGGAAAATAATTTTTAAA+AGG - Chr2:9504076-9504095 MsG0280007019.01.T01:intron 20.0%
!!! TTGTTTTTTGGAAAGAATTA+TGG - Chr2:9505367-9505386 MsG0280007019.01.T01:intron 20.0%
!!! TTTTGATGGTTAGTTTAAAT+TGG + Chr2:9503896-9503915 None:intergenic 20.0%
! AAATGGATATTATTGCTGAA+AGG + Chr2:9502961-9502980 None:intergenic 25.0%
! ACCAAAACAATTAATTAAGC+TGG + Chr2:9502380-9502399 None:intergenic 25.0%
! ATCATATCATCTTCAATCAT+AGG + Chr2:9502212-9502231 None:intergenic 25.0%
! CAGTATAAGGTCAATTATTT+CGG - Chr2:9504945-9504964 MsG0280007019.01.T01:intron 25.0%
! CCAAAACAATTAATTAAGCT+GGG + Chr2:9502379-9502398 None:intergenic 25.0%
! CTATGAGACTCATAATATAT+GGG + Chr2:9503074-9503093 None:intergenic 25.0%
! CTGGTTATCATATTCATTTA+TGG - Chr2:9502335-9502354 MsG0280007019.01.T01:intron 25.0%
! TAGGCTATGCTAAAAAAATA+AGG + Chr2:9505258-9505277 None:intergenic 25.0%
! TCTACAAAAGAGAAAGAATA+GGG - Chr2:9505188-9505207 MsG0280007019.01.T01:intron 25.0%
! TCTATGAGACTCATAATATA+TGG + Chr2:9503075-9503094 None:intergenic 25.0%
! TGAATCTAAATTACAATGTC+AGG + Chr2:9505454-9505473 None:intergenic 25.0%
! TTCATTTATGGATCATAAGA+AGG - Chr2:9502347-9502366 MsG0280007019.01.T01:intron 25.0%
! TTCTACAAAAGAGAAAGAAT+AGG - Chr2:9505187-9505206 MsG0280007019.01.T01:intron 25.0%
!! AAACAAATTTTGCTTACATG+GGG + Chr2:9501925-9501944 None:intergenic 25.0%
!! AAAGTGATAATGTTTGCATT+TGG + Chr2:9502453-9502472 None:intergenic 25.0%
!! GAAAACAAATTTTGCTTACA+TGG + Chr2:9501927-9501946 None:intergenic 25.0%
!! TTTTGTAAAAGCAAGCTAAT+TGG - Chr2:9504787-9504806 MsG0280007019.01.T01:intron 25.0%
!!! AAATTTGGTGTGAATTTCAA+TGG + Chr2:9504367-9504386 None:intergenic 25.0%
!!! ACAGGTCTTATTTAGAAATT+TGG + Chr2:9503742-9503761 None:intergenic 25.0%
!!! ACTTTTTTTTTTTGGTGGAA+AGG + Chr2:9503036-9503055 None:intergenic 25.0%
!!! ATGTGATTGTTGTTTTCTTT+GGG - Chr2:9501986-9502005 MsG0280007019.01.T03:three_prime_UTR 25.0%
!!! CATTGATTTAACGGATTTTT+CGG - Chr2:9502757-9502776 MsG0280007019.01.T01:intron 25.0%
!!! TATGTGATTGTTGTTTTCTT+TGG - Chr2:9501985-9502004 MsG0280007019.01.T03:three_prime_UTR 25.0%
!!! TCACAAAAGTTGTTGATTTT+TGG - Chr2:9502704-9502723 MsG0280007019.01.T01:intron 25.0%
!!! TCTACTTTTCCTTTGAAAAT+TGG - Chr2:9502675-9502694 MsG0280007019.01.T01:intron 25.0%
!!! TTAGTTTAAATTGGTTTGAG+AGG + Chr2:9503887-9503906 None:intergenic 25.0%
AAAAAGTGATGACTCCAATA+GGG - Chr2:9505073-9505092 MsG0280007019.01.T01:intron 30.0%
AAATACACATATTGAGAGAG+AGG - Chr2:9503671-9503690 MsG0280007019.01.T01:intron 30.0%
AATGCTGGCAAATAGAATTA+AGG - Chr2:9505044-9505063 MsG0280007019.01.T01:intron 30.0%
AATTGTTGTATGGAGGAAAA+AGG + Chr2:9501883-9501902 None:intergenic 30.0%
ACAATGTCAGGATTTGAATA+TGG + Chr2:9505442-9505461 None:intergenic 30.0%
ACACAAACACCATCATATTT+AGG - Chr2:9503774-9503793 MsG0280007019.01.T01:intron 30.0%
ACTCATAATATATGGGCAAA+GGG + Chr2:9503067-9503086 None:intergenic 30.0%
ACTGTACATACCAAACAAAA+AGG - Chr2:9503256-9503275 MsG0280007019.01.T01:intron 30.0%
ATGAATATAGTTCAATGGGT+AGG + Chr2:9504216-9504235 None:intergenic 30.0%
ATTGCTGAAAGGTTAAATCA+AGG + Chr2:9502950-9502969 None:intergenic 30.0%
ATTGGGACCGAAAATTATAA+AGG - Chr2:9503478-9503497 MsG0280007019.01.T01:intron 30.0%
CTCCATGAATATAGTTCAAT+GGG + Chr2:9504220-9504239 None:intergenic 30.0%
CTTGTTAATCAGATTATCTG+CGG - Chr2:9504058-9504077 MsG0280007019.01.T01:intron 30.0%
GAAAATGTAAGCATAAGAGA+AGG + Chr2:9505337-9505356 None:intergenic 30.0%
GAGAGATAAAGTTGTGATAT+AGG + Chr2:9502599-9502618 None:intergenic 30.0%
GGAAAAAAAAAAACCTTGCA+AGG + Chr2:9505316-9505335 None:intergenic 30.0%
GTACAGTAAATGTAATCAAG+AGG - Chr2:9503387-9503406 MsG0280007019.01.T01:intron 30.0%
TACCCATTGAACTATATTCA+TGG - Chr2:9504215-9504234 MsG0280007019.01.T01:intron 30.0%
TCTCCATGAATATAGTTCAA+TGG + Chr2:9504221-9504240 None:intergenic 30.0%
TGAATATAGTTCAATGGGTA+GGG + Chr2:9504215-9504234 None:intergenic 30.0%
TGATATAGGTTGTCACAAAA+TGG + Chr2:9502585-9502604 None:intergenic 30.0%
TGATTGCTAGAATTGTTGTA+TGG + Chr2:9501893-9501912 None:intergenic 30.0%
TTGCTGAAAGGTTAAATCAA+GGG + Chr2:9502949-9502968 None:intergenic 30.0%
TTGGGACCGAAAATTATAAA+GGG - Chr2:9503479-9503498 MsG0280007019.01.T01:intron 30.0%
! CCCAGCTTAATTAATTGTTT+TGG - Chr2:9502376-9502395 MsG0280007019.01.T01:intron 30.0%
! GGAGATCCCTTTATAATTTT+CGG + Chr2:9503488-9503507 None:intergenic 30.0%
! TGATTTTGCTAACGATGATA+TGG + Chr2:9505228-9505247 None:intergenic 30.0%
!! ACTTTTCCTTTGAAAATTGG+TGG - Chr2:9502678-9502697 MsG0280007019.01.T01:intron 30.0%
!! ATGTTAGCATTTGATTTGAG+TGG - Chr2:9502186-9502205 MsG0280007019.01.T01:intron 30.0%
!! GACTAATTTGCCTTTTTGTT+TGG + Chr2:9503269-9503288 None:intergenic 30.0%
!! TGATGGTGTTTGTGTTATTT+CGG + Chr2:9503769-9503788 None:intergenic 30.0%
!! TTAAAAAAGTTTGGTGTGAG+TGG - Chr2:9504715-9504734 MsG0280007019.01.T01:intron 30.0%
!! TTTGACTTTGATTTTGGTGT+TGG + Chr2:9503925-9503944 None:intergenic 30.0%
!!! CTTCTTTTTTAAACCTTGCA+AGG - Chr2:9505300-9505319 MsG0280007019.01.T01:intron 30.0%
AAACATGCACAAAGAACATC+TGG + Chr2:9504909-9504928 None:intergenic 35.0%
ACAGAATGAGTAACTCAAAC+TGG - Chr2:9502316-9502335 MsG0280007019.01.T01:intron 35.0%
ACTTTCTCTCTCTATTGCTT+TGG - Chr2:9502638-9502657 MsG0280007019.01.T01:intron 35.0%
AGGAAAAGTAGATAGTGACA+CGG + Chr2:9502667-9502686 None:intergenic 35.0%
ATGTGTTATGCAGCAGTATA+AGG - Chr2:9504932-9504951 MsG0280007019.01.T01:intron 35.0%
CAAACACCATCATATTTAGG+CGG - Chr2:9503777-9503796 MsG0280007019.01.T01:intron 35.0%
CCATGAAAAGATCTTTGCAA+AGG - Chr2:9505163-9505182 MsG0280007019.01.T01:intron 35.0%
GAAAAAGTGATGACTCCAAT+AGG - Chr2:9505072-9505091 MsG0280007019.01.T01:intron 35.0%
GAACTATATTCATGGAGAGT+CGG - Chr2:9504223-9504242 MsG0280007019.01.T01:intron 35.0%
GACTCATAATATATGGGCAA+AGG + Chr2:9503068-9503087 None:intergenic 35.0%
GATATTCCGCCTAAATATGA+TGG + Chr2:9503786-9503805 None:intergenic 35.0%
GTCGCATACATATCTTATCA+TGG + Chr2:9502238-9502257 None:intergenic 35.0%
TAATAATGTGAATGTCGTGC+AGG - Chr2:9505008-9505027 MsG0280007019.01.T01:intron 35.0%
TCAATAAAGGGTAGAAGAAG+AGG - Chr2:9502037-9502056 MsG0280007019.01.T03:three_prime_UTR 35.0%
TCTACTGTGTTCATATGCAT+TGG - Chr2:9503343-9503362 MsG0280007019.01.T01:intron 35.0%
TCTATTTGCCAGCATTAAGA+TGG + Chr2:9505040-9505059 None:intergenic 35.0%
TGAGATTCTTAATAGTGCTC+CGG - Chr2:9502906-9502925 MsG0280007019.01.T01:intron 35.0%
TTGCTAGAATTGTTGTATGG+AGG + Chr2:9501890-9501909 None:intergenic 35.0%
! AGTTTGAGTTACTCATTCTG+TGG + Chr2:9502317-9502336 None:intergenic 35.0%
! CCTTTGCAAAGATCTTTTCA+TGG + Chr2:9505166-9505185 None:intergenic 35.0%
! TGACAACCACCAATTTTCAA+AGG + Chr2:9502687-9502706 None:intergenic 35.0%
!! TTGTGTTATTTCGGTCTAAC+AGG + Chr2:9503760-9503779 None:intergenic 35.0%
!!! TTTGATTTTGGTGTTGGCTT+TGG + Chr2:9503919-9503938 None:intergenic 35.0%
!!! TTTTTTACATTGGCCCAAGT+CGG - Chr2:9503547-9503566 MsG0280007019.01.T01:intron 35.0%
ACCACTTACTATCTCTTTCG+TGG + Chr2:9504586-9504605 None:intergenic 40.0%
AGGTTTCACTACCAACTTGT+CGG + Chr2:9504539-9504558 None:intergenic 40.0%
AGTAAGTGGTAGGTTCCTAT+AGG - Chr2:9504596-9504615 MsG0280007019.01.T01:intron 40.0%
ATCAAGTATTTAGGCTGCTG+TGG + Chr2:9503951-9503970 None:intergenic 40.0%
CAAGAGTCGAGTTTGAATCT+CGG + Chr2:9504179-9504198 None:intergenic 40.0%
CATCTTGCCATCGTAGAAAA+TGG + Chr2:9502108-9502127 None:intergenic 40.0%
CCAGGGCTATATAATTGATG+AGG + Chr2:9505132-9505151 None:intergenic 40.0%
CCTCATCAATTATATAGCCC+TGG - Chr2:9505129-9505148 MsG0280007019.01.T01:intron 40.0%
CGAAAGAGATAGTAAGTGGT+AGG - Chr2:9504586-9504605 MsG0280007019.01.T01:intron 40.0%
CTAATTTACGTTGAGTCCCA+AGG + Chr2:9503321-9503340 None:intergenic 40.0%
CTTAGCTTAAGTGCTATGCA+CGG + Chr2:9504478-9504497 None:intergenic 40.0%
GATGATATGGAGATGCTTCT+TGG + Chr2:9505215-9505234 None:intergenic 40.0%
TCAAGTATTTAGGCTGCTGT+GGG + Chr2:9503950-9503969 None:intergenic 40.0%
TCCACGAAAGAGATAGTAAG+TGG - Chr2:9504582-9504601 MsG0280007019.01.T01:intron 40.0%
TCGAGTTTGAATCTCGGATT+CGG + Chr2:9504173-9504192 None:intergenic 40.0%
TGAGGAGATTGCACTATTGT+TGG + Chr2:9505114-9505133 None:intergenic 40.0%
TGAGTTACTCATTCTGTGGT+AGG + Chr2:9502313-9502332 None:intergenic 40.0%
! GATCTTTTCATGGAAAGACC+TGG + Chr2:9505156-9505175 None:intergenic 40.0%
! TGCCAGCATTAAGATGGATT+TGG + Chr2:9505034-9505053 None:intergenic 40.0%
! TTGCTTACATGGGGTGATTT+TGG + Chr2:9501916-9501935 None:intergenic 40.0%
! TTTTTACATTGGCCCAAGTC+GGG - Chr2:9503548-9503567 MsG0280007019.01.T01:intron 40.0%
!! TAAGGTCTTAAAGAGTGCTC+CGG + Chr2:9502801-9502820 None:intergenic 40.0%
!! TGCACTATTGTTGGTGTTGA+TGG + Chr2:9505105-9505124 None:intergenic 40.0%
!! TGGGGGTTTGACTTTGATTT+TGG + Chr2:9503931-9503950 None:intergenic 40.0%
AAGTATTTAGGCTGCTGTGG+GGG + Chr2:9503948-9503967 None:intergenic 45.0%
AAGTGGTAGGTTCCTATAGG+TGG - Chr2:9504599-9504618 MsG0280007019.01.T01:intron 45.0%
AATAGTCGTTGCCGACAAGT+TGG - Chr2:9504525-9504544 MsG0280007019.01.T01:intron 45.0%
AATTACGTTGCAGCGAACCT+TGG - Chr2:9503301-9503320 MsG0280007019.01.T01:intron 45.0%
ACAACAACGCCACTCAAATG+AGG - Chr2:9503857-9503876 MsG0280007019.01.T01:intron 45.0%
AGAGGTAGTCCTCATTTGAG+TGG + Chr2:9503869-9503888 None:intergenic 45.0%
ATTACGTTGCAGCGAACCTT+GGG - Chr2:9503302-9503321 MsG0280007019.01.T01:intron 45.0%
CAAGTATTTAGGCTGCTGTG+GGG + Chr2:9503949-9503968 None:intergenic 45.0%
CAATTATATAGCCCTGGACC+AGG - Chr2:9505135-9505154 MsG0280007019.01.T01:intron 45.0%
CATGCTCATACACCACCTAT+AGG + Chr2:9504614-9504633 None:intergenic 45.0%
CATTTGAGTGGCGTTGTTGT+TGG + Chr2:9503857-9503876 None:intergenic 45.0%
CCATCGTAGAAAATGGTCAG+TGG + Chr2:9502101-9502120 None:intergenic 45.0%
CGCTGCAACGTAATTCTAAG+AGG + Chr2:9503296-9503315 None:intergenic 45.0%
CGGATTCGGATTCACTTAAG+TGG + Chr2:9504159-9504178 None:intergenic 45.0%
GGCCAAATCCATCTTAATGC+TGG - Chr2:9505029-9505048 MsG0280007019.01.T01:intron 45.0%
TACTGATGTCACAGAGCTTC+AGG - Chr2:9502133-9502152 MsG0280007019.01.T01:CDS 45.0%
TTAATAGTGCTCCGGAACAC+TGG - Chr2:9502914-9502933 MsG0280007019.01.T01:intron 45.0%
! CCACTGACCATTTTCTACGA+TGG - Chr2:9502098-9502117 MsG0280007019.01.T03:intron 45.0%
!! AAGGTCTTAAAGAGTGCTCC+GGG + Chr2:9502800-9502819 None:intergenic 45.0%
!! GGTCTTGTTAACCAGTGTTC+CGG + Chr2:9502928-9502947 None:intergenic 45.0%
!! TGGCGTTGTTGTTGGTTTGT+TGG + Chr2:9503849-9503868 None:intergenic 45.0%
!!! GGCTGTTGCTGATTTTGCAT+TGG + Chr2:9502080-9502099 None:intergenic 45.0%
!!! GGTGTTGGCTTTGGTTTTGA+TGG + Chr2:9503910-9503929 None:intergenic 45.0%
!! AAATTAAATTTAAAAATGAA+AGG + Chr2:9501963-9501982 None:intergenic 5.0%
!! TTATTATCAAAAAAATTAAT+GGG - Chr2:9504984-9505003 MsG0280007019.01.T01:intron 5.0%
!! TTTATTATCAAAAAAATTAA+TGG - Chr2:9504983-9505002 MsG0280007019.01.T01:intron 5.0%
!!! ATAATAAGATAATAATTTTT+CGG + Chr2:9503510-9503529 None:intergenic 5.0%
!!! TATTAATTTATGATTTTATT+GGG - Chr2:9503461-9503480 MsG0280007019.01.T01:intron 5.0%
!!! TTATTAATTTATGATTTTAT+TGG - Chr2:9503460-9503479 MsG0280007019.01.T01:intron 5.0%
AAATTTGTCCGGTCCCGACT+TGG + Chr2:9503564-9503583 None:intergenic 50.0%
AATTTGTCCGGTCCCGACTT+GGG + Chr2:9503563-9503582 None:intergenic 50.0%
GAAATGTTAACGAGTGCCCC+CGG - Chr2:9502779-9502798 MsG0280007019.01.T01:intron 50.0%
TCATGGAAAGACCTGGTCCA+GGG + Chr2:9505149-9505168 None:intergenic 50.0%
TTCATGGAAAGACCTGGTCC+AGG + Chr2:9505150-9505169 None:intergenic 50.0%
!! AGGTCTTAAAGAGTGCTCCG+GGG + Chr2:9502799-9502818 None:intergenic 50.0%
!! GTTGATGGCTCTGACCCTAT+TGG + Chr2:9505090-9505109 None:intergenic 50.0%
!! GGTCTTAAAGAGTGCTCCGG+GGG + Chr2:9502798-9502817 None:intergenic 55.0%
ACATTGGCCCAAGTCGGGAC+CGG - Chr2:9503553-9503572 MsG0280007019.01.T01:intron 60.0%
Chromosome Type Strat End Strand Name
Chr2 gene 9501851 9505494 9501851 ID=MsG0280007019.01;Name=MsG0280007019.01
Chr2 mRNA 9502106 9505494 9502106 ID=MsG0280007019.01.T01;Parent=MsG0280007019.01;Name=MsG0280007019.01.T01;_AED=0.46;_eAED=0.46;_QI=0|0.33|0|1|0|0|4|0|117
Chr2 exon 9505427 9505494 9505427 ID=MsG0280007019.01.T01:exon:8351;Parent=MsG0280007019.01.T01
Chr2 CDS 9505427 9505494 9505427 ID=MsG0280007019.01.T01:cds;Parent=MsG0280007019.01.T01
Chr2 CDS 9505191 9505299 9505191 ID=MsG0280007019.01.T01:cds;Parent=MsG0280007019.01.T01
Chr2 CDS 9502228 9502315 9502228 ID=MsG0280007019.01.T01:cds;Parent=MsG0280007019.01.T01
Chr2 CDS 9502106 9502194 9502106 ID=MsG0280007019.01.T01:cds;Parent=MsG0280007019.01.T01
Chr2 mRNA 9501851 9505494 9501851 ID=MsG0280007019.01.T02;Parent=MsG0280007019.01;Name=MsG0280007019.01.T02;_AED=0.42;_eAED=0.42;_QI=0|0.5|0.33|1|0|0|3|255|131
Chr2 exon 9505418 9505494 9505418 ID=MsG0280007019.01.T02:exon:8355;Parent=MsG0280007019.01.T02
Chr2 CDS 9505418 9505494 9505418 ID=MsG0280007019.01.T02:cds;Parent=MsG0280007019.01.T02
Chr2 CDS 9505191 9505299 9505191 ID=MsG0280007019.01.T02:cds;Parent=MsG0280007019.01.T02
Chr2 CDS 9502106 9502315 9502106 ID=MsG0280007019.01.T02:cds;Parent=MsG0280007019.01.T02
Chr2 three_prime_UTR 9501851 9502105 9501851 ID=MsG0280007019.01.T02:three_prime_utr;Parent=MsG0280007019.01.T02
Chr2 mRNA 9501851 9505494 9501851 ID=MsG0280007019.01.T03;Parent=MsG0280007019.01;Name=MsG0280007019.01.T03;_AED=0.42;_eAED=0.42;_QI=0|0.5|0.33|1|0|0|3|255|125
Chr2 exon 9505191 9505303 9505191 ID=MsG0280007019.01.T03:exon:8358;Parent=MsG0280007019.01.T03
Chr2 exon 9505440 9505494 9505440 ID=MsG0280007019.01.T03:exon:8357;Parent=MsG0280007019.01.T03
Chr2 CDS 9505440 9505494 9505440 ID=MsG0280007019.01.T03:cds;Parent=MsG0280007019.01.T03
Chr2 CDS 9505191 9505303 9505191 ID=MsG0280007019.01.T03:cds;Parent=MsG0280007019.01.T03
Chr2 CDS 9502106 9502315 9502106 ID=MsG0280007019.01.T03:cds;Parent=MsG0280007019.01.T03
Chr2 three_prime_UTR 9501851 9502105 9501851 ID=MsG0280007019.01.T03:three_prime_utr;Parent=MsG0280007019.01.T03
Chr2 mRNA 9502106 9505272 9502106 ID=MsG0280007019.01.T04;Parent=MsG0280007019.01;Name=MsG0280007019.01.T04;_AED=0.47;_eAED=0.47;_QI=7|0.5|0.33|1|0|0|3|0|83
Chr2 five_prime_UTR 9505266 9505272 9505266 ID=MsG0280007019.01.T04:five_prime_utr;Parent=MsG0280007019.01.T04
Chr2 CDS 9505191 9505265 9505191 ID=MsG0280007019.01.T04:cds;Parent=MsG0280007019.01.T04
Chr2 CDS 9502228 9502315 9502228 ID=MsG0280007019.01.T04:cds;Parent=MsG0280007019.01.T04
Chr2 CDS 9502106 9502194 9502106 ID=MsG0280007019.01.T04:cds;Parent=MsG0280007019.01.T04
Chr2 mRNA 9501851 9505272 9501851 ID=MsG0280007019.01.T05;Parent=MsG0280007019.01;Name=MsG0280007019.01.T05;_AED=0.43;_eAED=0.43;_QI=7|1|1|1|0|0|2|255|94
Chr2 five_prime_UTR 9505266 9505272 9505266 ID=MsG0280007019.01.T05:five_prime_utr;Parent=MsG0280007019.01.T05
Chr2 CDS 9505191 9505265 9505191 ID=MsG0280007019.01.T05:cds;Parent=MsG0280007019.01.T05
Chr2 CDS 9502106 9502315 9502106 ID=MsG0280007019.01.T05:cds;Parent=MsG0280007019.01.T05
Chr2 three_prime_UTR 9501851 9502105 9501851 ID=MsG0280007019.01.T05:three_prime_utr;Parent=MsG0280007019.01.T05
Chr2 mRNA 9502106 9502180 9502106 ID=MsG0280007019.01.T06;Parent=MsG0280007019.01;Name=MsG0280007019.01.T06;_AED=0.49;_eAED=0.49;_QI=0|-1|0|1|-1|0|1|0|24
Chr2 exon 9502106 9502180 9502106 ID=MsG0280007019.01.T06:exon:8360;Parent=MsG0280007019.01.T06
Chr2 CDS 9502106 9502180 9502106 ID=MsG0280007019.01.T06:cds;Parent=MsG0280007019.01.T06
Gene Sequence

>MsG0280007019.01.T02

ATGAGGAGGAATTGCAACTTGGAACTATGCCTTTTTCCTCCATACAACAATTCTAGCAATCACCAAAATCACCCCATGGTAGAAGAAGAGGATAGTAATGAGAGCACTCCAATGCAAAATCAGCAACAGCCACTGACCATTTTCTACGATGGCAAGATGTGTGTTACTGATGTCACAGAGCTTCAGGCCAAATCCATCTTAATGCTGGCAAATAGAATTAAGGTGCAAGAAAAAGTGATGACTCCAATAGGGTCAGAGCCATCAACACCAACAATAGTGCAATCTCCTCATCAATTATATAGCCCTGGACCAGGTCTTTCCATGAAAAGATCTTTGCAAAGGTTTCTACAAAAGAGAAAGAATAGGGTCCAAGAAGCATCTCCATATCATCGTTAG

>MsG0280007019.01.T04

ATGCAAAATCAGCAACAGCCACTGACCATTTTCTACGATGGCAAGATGTGTGTTACTGATGTCACAGAGCTTCAGGCCAAATCCATCTTAATGCTGGCAAATAGAATTAAGGTGCAAGAAAAAGTGATGACTCCAATAGGGTCAGAGCCATCAACACCAACAAGACCAGGTCTTTCCATGAAAAGATCTTTGCAAAGGTTTCTACAAAAGAGAAAGAATAGGGTCCAAGAAGCATCTCCATATCATCGTTAG

>MsG0280007019.01.T01

ATGAGGAGGAATTGCAACTTGGAACTATGCCTTTTTCCTCCATACAACAATTCTAGCAATCACCAAAAGGTAGAAGAAGAGGATAGTAATGAGAGCACTCCAATGCAAAATCAGCAACAGCCACTGACCATTTTCTACGATGGCAAGATGTGTGTTACTGATGTCACAGAGCTTCAGGCCAAATCCATCTTAATGCTGGCAAATAGAATTAAGGTGCAAGAAAAAGTGATGACTCCAATAGGGTCAGAGCCATCAACACCAACAAGACCAGGTCTTTCCATGAAAAGATCTTTGCAAAGGTTTCTACAAAAGAGAAAGAATAGGGTCCAAGAAGCATCTCCATATCATCGTTAG

>MsG0280007019.01.T03

ATGAGGAGGAATTGCAACTTGGAACTATGCCTTTTTCCTCCATACAACAATTCTAAAAGGGTAGAAGAAGAGGATAGTAATGAGAGCACTCCAATGCAAAATCAGCAACAGCCACTGACCATTTTCTACGATGGCAAGATGTGTGTTACTGATGTCACAGAGCTTCAGGCCAAATCCATCTTAATGCTGGCAAATAGAATTAAGGTGCAAGAAAAAGTGATGACTCCAATAGGGTCAGAGCCATCAACACCAACAATAGTGCAATCTCCTCATCAATTATATAGCCCTGGACCAGGTCTTTCCATGAAAAGATCTTTGCAAAGGTTTCTACAAAAGAGAAAGAATAGGGTCCAAGAAGCATCTCCATATCATCGTTAG

>MsG0280007019.01.T06

ATGAAAAGATCTTTGCAAAGGTTTCTACAAAAGAGAAAGAATAGGGTCCAAGAAGCATCTCCATATCATCGTTAG

>MsG0280007019.01.T05

ATGCAAAATCAGCAACAGCCACTGACCATTTTCTACGATGGCAAGATGTGTGTTACTGATGTCACAGAGCTTCAGGCCAAATCCATCTTAATGCTGGCAAATAGAATTAAGGTGCAAGAAAAAGTGATGACTCCAATAGGGTCAGAGCCATCAACACCAACAATAGTGCAATCTCCTCATCAATTATATAGCCCTGGACCAGGTCTTTCCATGAAAAGATCTTTGCAAAGGTTTCTACAAAAGAGAAAGAATAGGGTCCAAGAAGCATCTCCATATCATCGTTAG
Protein sequence

>MsG0280007019.01.T02

MRRNCNLELCLFPPYNNSSNHQNHPMVEEEDSNESTPMQNQQQPLTIFYDGKMCVTDVTELQAKSILMLANRIKVQEKVMTPIGSEPSTPTIVQSPHQLYSPGPGLSMKRSLQRFLQKRKNRVQEASPYHR*

>MsG0280007019.01.T04

MQNQQQPLTIFYDGKMCVTDVTELQAKSILMLANRIKVQEKVMTPIGSEPSTPTRPGLSMKRSLQRFLQKRKNRVQEASPYHR*

>MsG0280007019.01.T01

MRRNCNLELCLFPPYNNSSNHQKVEEEDSNESTPMQNQQQPLTIFYDGKMCVTDVTELQAKSILMLANRIKVQEKVMTPIGSEPSTPTRPGLSMKRSLQRFLQKRKNRVQEASPYHR*

>MsG0280007019.01.T03

MRRNCNLELCLFPPYNNSKRVEEEDSNESTPMQNQQQPLTIFYDGKMCVTDVTELQAKSILMLANRIKVQEKVMTPIGSEPSTPTIVQSPHQLYSPGPGLSMKRSLQRFLQKRKNRVQEASPYHR*

>MsG0280007019.01.T06

MKRSLQRFLQKRKNRVQEASPYHR*

>MsG0280007019.01.T05

MQNQQQPLTIFYDGKMCVTDVTELQAKSILMLANRIKVQEKVMTPIGSEPSTPTIVQSPHQLYSPGPGLSMKRSLQRFLQKRKNRVQEASPYHR*