AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0280007031.01


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0280007031.01.T01 MTR_2g019370 75.082 305 2 3 1 249 1 287 9.32e-155 435
MsG0280007031.01.T01 MTR_4g096840 53.922 306 64 5 1 249 1 286 4.10e-105 309
MsG0280007031.01.T01 MTR_2g070870 47.039 304 80 5 1 248 1 279 3.41e-88 266
MsG0280007031.01.T01 MTR_8g461330 45.098 306 92 6 1 249 1 287 6.51e-79 243
MsG0280007031.01.T01 MTR_1g086550 38.328 287 95 5 27 249 19 287 7.28e-58 189
MsG0280007031.01.T01 MTR_4g123020 34.796 319 120 9 13 268 1 294 2.37e-47 161
MsG0280007031.01.T01 MTR_2g033270 36.029 272 105 7 28 249 19 271 3.44e-42 147
MsG0280007031.01.T01 MTR_3g015110 32.353 204 79 6 28 203 20 192 1.61e-21 90.5
MsG0280007031.01.T01 MTR_0009s0050 24.920 313 145 10 21 271 40 324 1.35e-20 90.5
MsG0280007031.01.T01 MTR_0009s0050 24.920 313 145 10 21 271 40 324 1.58e-20 90.5
MsG0280007031.01.T01 MTR_5g048570 25.490 306 138 11 28 271 45 322 4.27e-19 86.3
MsG0280007031.01.T01 MTR_5g055900 25.424 295 130 10 21 253 40 306 4.35e-19 86.3
MsG0280007031.01.T01 MTR_2g102570 26.316 304 130 9 9 250 37 308 4.74e-19 86.3
MsG0280007031.01.T01 MTR_5g032880 25.817 306 132 10 10 246 355 634 6.64e-19 87.0
MsG0280007031.01.T01 MTR_5g032880 36.134 119 50 3 128 246 196 288 1.37e-14 74.3
MsG0280007031.01.T01 MTR_5g055680 25.424 295 130 10 21 253 40 306 9.60e-19 85.5
MsG0280007031.01.T01 MTR_4g087090 26.645 304 123 9 19 248 21 298 4.51e-18 83.6
MsG0280007031.01.T01 MTR_0009s0050 26.000 250 125 8 54 271 5 226 6.26e-18 81.6
MsG0280007031.01.T01 MTR_0009s0050 26.000 250 125 8 54 271 5 226 7.54e-18 81.6
MsG0280007031.01.T01 MTR_1g033810 26.230 305 125 14 25 265 44 312 1.46e-17 82.0
MsG0280007031.01.T01 MTR_5g048550 25.773 291 126 12 21 249 40 302 1.80e-17 81.6
MsG0280007031.01.T01 MTR_2g072890 35.211 142 58 6 103 243 195 303 2.70e-17 81.3
MsG0280007031.01.T01 MTR_0009s0050 30.345 145 74 4 128 271 26 144 3.29e-17 77.8
MsG0280007031.01.T01 MTR_0328s0030 24.830 294 119 11 21 246 38 297 4.63e-17 80.5
MsG0280007031.01.T01 MTR_5g048470 25.000 292 128 11 21 249 46 309 6.04e-17 80.1
MsG0280007031.01.T01 MTR_3g045230 33.333 138 66 3 118 254 201 313 1.12e-16 79.3
MsG0280007031.01.T01 MTR_8g024120 36.134 119 50 3 128 246 202 294 1.40e-16 79.0
MsG0280007031.01.T01 MTR_2g437380 27.935 247 113 9 42 253 4 220 1.61e-16 77.8
MsG0280007031.01.T01 MTR_8g064200 25.342 292 127 11 21 249 50 313 1.94e-16 79.0
MsG0280007031.01.T01 MTR_8g064200 25.342 292 127 11 21 249 45 308 2.12e-16 78.6
MsG0280007031.01.T01 MTR_3g043900 33.333 138 66 3 118 254 200 312 2.52e-16 78.6
MsG0280007031.01.T01 MTR_2g437380 27.935 247 113 9 42 253 98 314 4.08e-16 77.8
MsG0280007031.01.T01 MTR_3g083370 37.815 119 47 4 129 246 161 253 8.21e-16 76.6
MsG0280007031.01.T01 MTR_1g034120 38.333 120 48 3 128 246 205 299 9.81e-16 76.6
MsG0280007031.01.T01 MTR_3g072810 25.342 292 145 12 1 253 42 299 1.19e-15 76.3
MsG0280007031.01.T01 MTR_5g032870 35.000 120 52 3 127 246 203 296 1.43e-15 76.3
MsG0280007031.01.T01 MTR_1g070135 33.613 119 53 4 128 246 198 290 1.65e-14 73.2
MsG0280007031.01.T01 MTR_7g068650 24.315 292 124 11 28 250 54 317 1.69e-14 73.2
MsG0280007031.01.T01 MTR_6g015950 27.338 278 117 13 28 246 39 290 2.09e-14 72.8
MsG0280007031.01.T01 MTR_4g117880 25.271 277 120 10 28 243 60 310 2.24e-14 72.8
MsG0280007031.01.T01 MTR_3g117485 24.138 232 112 9 51 246 32 235 2.56e-14 72.0
MsG0280007031.01.T01 MTR_3g092890 24.915 293 128 13 16 246 26 288 2.74e-14 72.4
MsG0280007031.01.T01 MTR_1g034140 35.833 120 51 3 128 246 195 289 3.44e-14 72.0
MsG0280007031.01.T01 MTR_7g029655 35.338 133 56 5 115 243 207 313 3.84e-14 72.4
MsG0280007031.01.T01 MTR_0056s0160 27.742 155 69 5 96 249 75 187 3.84e-14 70.9
MsG0280007031.01.T01 MTR_8g074070 25.630 238 116 9 42 246 98 307 3.97e-14 72.0
MsG0280007031.01.T01 MTR_3g117485 24.138 232 112 9 51 246 104 307 3.99e-14 72.0
MsG0280007031.01.T01 MTR_8g074070 26.244 221 117 9 42 246 98 288 4.24e-14 72.0
MsG0280007031.01.T01 MTR_5g082750 23.948 309 130 14 6 246 36 307 4.25e-14 72.0
MsG0280007031.01.T01 MTR_5g085330 36.441 118 48 4 130 246 163 254 5.06e-14 71.6
MsG0280007031.01.T01 MTR_2g069010 31.655 139 64 4 105 243 210 317 5.98e-14 71.6
MsG0280007031.01.T01 MTR_2g083000 31.496 127 61 3 128 254 190 290 6.23e-14 71.2
MsG0280007031.01.T01 MTR_5g048740 28.571 161 68 6 96 255 189 303 6.71e-14 71.2
MsG0280007031.01.T01 MTR_2g069210 35.772 123 51 4 126 246 221 317 6.99e-14 71.6
MsG0280007031.01.T01 MTR_1g034060 35.833 120 51 3 128 246 205 299 7.40e-14 71.2
MsG0280007031.01.T01 MTR_4g074130 23.529 289 132 10 15 246 35 291 7.90e-14 71.2
MsG0280007031.01.T01 MTR_7g062580 24.561 285 125 11 24 246 51 307 8.13e-14 71.2
MsG0280007031.01.T01 MTR_1g070120 33.613 119 53 4 128 246 198 290 8.22e-14 71.2
MsG0280007031.01.T01 MTR_4g132770 34.454 119 51 4 129 246 31 123 1.18e-13 67.8
MsG0280007031.01.T01 MTR_4g024660 24.092 303 138 10 28 267 67 340 1.48e-13 70.5
MsG0280007031.01.T01 MTR_8g093980 34.507 142 63 6 105 246 207 318 1.56e-13 70.5
MsG0280007031.01.T01 MTR_0009s0400 30.709 127 61 4 128 253 2 102 1.71e-13 67.0
MsG0280007031.01.T01 MTR_7g056347 30.769 130 58 4 120 243 212 315 2.14e-13 70.1
MsG0280007031.01.T01 MTR_1g070100 32.773 119 54 3 128 246 116 208 2.16e-13 68.9
MsG0280007031.01.T01 MTR_3g070860 23.693 287 123 11 28 246 50 308 2.38e-13 69.7
MsG0280007031.01.T01 MTR_2g072910 29.286 140 67 5 105 243 194 302 2.89e-13 69.7
MsG0280007031.01.T01 MTR_1g011580 24.113 282 123 8 28 249 63 313 3.28e-13 69.3
MsG0280007031.01.T01 MTR_2g025120 35.000 120 51 4 128 246 160 253 3.49e-13 68.9
MsG0280007031.01.T01 MTR_5g055800 23.264 288 131 10 21 246 40 299 3.51e-13 69.3
MsG0280007031.01.T01 MTR_7g451860 25.000 296 126 13 12 246 33 293 4.61e-13 68.9
MsG0280007031.01.T01 MTR_7g047670 25.000 296 126 13 12 246 33 293 4.61e-13 68.9
MsG0280007031.01.T01 MTR_5g005570 26.449 276 120 11 28 246 37 286 4.87e-13 68.6
MsG0280007031.01.T01 MTR_8g074050 25.592 211 98 8 67 246 125 307 4.89e-13 68.9
MsG0280007031.01.T01 MTR_3g096500 31.469 143 65 6 105 246 218 328 5.42e-13 68.9
MsG0280007031.01.T01 MTR_3g088565 26.690 281 121 12 27 248 2 256 6.80e-13 68.2
MsG0280007031.01.T01 MTR_8g469400 29.530 149 78 4 120 267 205 327 7.11e-13 68.6
MsG0280007031.01.T01 MTR_5g055820 29.655 145 75 4 128 271 207 325 7.28e-13 68.6
MsG0280007031.01.T01 MTR_8g009170 32.237 152 69 5 120 265 207 330 7.29e-13 68.6
MsG0280007031.01.T01 MTR_8g033380 33.613 119 53 3 128 246 223 315 7.54e-13 68.6
MsG0280007031.01.T01 MTR_8g062600 23.453 307 144 11 23 267 63 340 8.70e-13 68.2
MsG0280007031.01.T01 MTR_4g087100 24.038 312 130 13 12 242 8 293 1.10e-12 67.8
MsG0280007031.01.T01 MTR_0009s0480 31.667 120 55 4 128 246 205 298 1.19e-12 67.8
MsG0280007031.01.T01 MTR_6g464620 23.529 289 125 12 28 246 64 326 1.22e-12 67.8
MsG0280007031.01.T01 MTR_3g058610 34.167 120 53 4 128 246 201 295 1.25e-12 67.8
MsG0280007031.01.T01 MTR_8g093930 31.690 142 67 5 105 246 196 307 1.32e-12 67.8
MsG0280007031.01.T01 MTR_4g087140 33.333 120 54 3 128 246 204 298 1.57e-12 67.4
MsG0280007031.01.T01 MTR_8g009110 24.042 287 125 8 21 243 53 310 1.87e-12 67.4
MsG0280007031.01.T01 MTR_4g015790 23.288 292 127 10 28 250 62 325 1.90e-12 67.4
MsG0280007031.01.T01 MTR_5g065010 31.724 145 67 5 111 249 178 296 2.80e-12 66.6
MsG0280007031.01.T01 MTR_2g083030 31.092 119 56 3 128 246 195 287 3.00e-12 66.2
MsG0280007031.01.T01 MTR_2g068950 30.147 136 64 4 105 240 204 308 3.96e-12 66.2
MsG0280007031.01.T01 MTR_8g028435 25.725 276 119 11 28 243 60 309 4.11e-12 66.2
MsG0280007031.01.T01 MTR_5g022020 22.924 301 133 11 26 254 37 310 4.11e-12 66.2
MsG0280007031.01.T01 MTR_0032s0040 28.571 168 78 7 91 243 178 318 4.61e-12 66.2
MsG0280007031.01.T01 MTR_1g102070 31.933 119 55 4 128 246 229 321 4.77e-12 66.2
MsG0280007031.01.T01 MTR_7g102820 31.452 124 59 3 126 249 237 334 5.43e-12 65.9
MsG0280007031.01.T01 MTR_8g075830 33.333 120 54 4 128 246 201 295 6.05e-12 65.9
MsG0280007031.01.T01 MTR_1g081840 30.282 142 68 5 105 246 205 315 6.22e-12 65.9
MsG0280007031.01.T01 MTR_7g105070 36.154 130 49 7 130 258 219 315 7.32e-12 65.5
MsG0280007031.01.T01 MTR_5g048850 23.239 284 130 12 21 243 40 296 7.66e-12 65.5
MsG0280007031.01.T01 MTR_8g075890 33.333 120 54 4 128 246 201 295 7.99e-12 65.5
MsG0280007031.01.T01 MTR_7g016090 22.867 293 134 11 16 246 29 291 8.10e-12 65.1
MsG0280007031.01.T01 MTR_7g016090 22.867 293 134 11 16 246 27 289 8.73e-12 65.1
MsG0280007031.01.T01 MTR_1g070135 43.421 76 35 2 128 203 198 265 1.07e-11 64.3
MsG0280007031.01.T01 MTR_8g009080 33.058 121 55 3 123 243 248 342 1.13e-11 65.1
MsG0280007031.01.T01 MTR_2g069060 32.283 127 54 4 120 240 194 294 1.15e-11 64.7
MsG0280007031.01.T01 MTR_3g040410 25.292 257 115 10 37 243 25 254 1.23e-11 64.3
MsG0280007031.01.T01 MTR_8g009160 30.921 152 71 5 120 265 206 329 1.27e-11 64.7
MsG0280007031.01.T01 MTR_2g069190 31.293 147 68 5 124 265 218 336 1.30e-11 64.7
MsG0280007031.01.T01 MTR_1g070185 26.519 181 96 6 61 240 168 312 1.89e-11 64.3
MsG0280007031.01.T01 MTR_1g062110 30.435 138 65 4 103 240 212 318 2.06e-11 64.3
MsG0280007031.01.T01 MTR_8g063070 30.496 141 66 4 120 254 212 326 2.12e-11 63.9
MsG0280007031.01.T01 MTR_1g043770 30.645 124 60 3 117 240 200 297 2.49e-11 63.9
MsG0280007031.01.T01 MTR_8g009090 25.000 276 121 10 28 243 60 309 3.06e-11 63.5
MsG0280007031.01.T01 MTR_1g093140 25.818 275 119 10 28 243 73 321 3.17e-11 63.5
MsG0280007031.01.T01 MTR_2g068840 29.545 132 62 3 128 253 213 319 3.21e-11 63.5
MsG0280007031.01.T01 MTR_5g011250 31.667 120 56 4 128 247 215 308 4.69e-11 63.2
MsG0280007031.01.T01 MTR_1g043760 30.233 129 64 3 117 245 201 303 5.29e-11 62.8
MsG0280007031.01.T01 MTR_8g041620 29.134 127 64 3 117 243 218 318 9.16e-11 62.4
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0280007031.01.T01 AT1G30040 44.571 350 97 9 1 282 1 321 9.60e-90 270
MsG0280007031.01.T01 AT2G34555 45.277 307 84 6 1 249 1 281 4.93e-81 248
MsG0280007031.01.T01 AT1G78440 43.750 304 86 6 1 248 1 275 1.05e-72 226
MsG0280007031.01.T01 AT1G30040 47.082 257 73 6 1 198 1 253 2.26e-71 221
MsG0280007031.01.T01 AT1G02400 37.943 282 93 6 28 249 24 283 7.71e-53 176
MsG0280007031.01.T01 AT1G47990 35.314 303 106 10 14 253 1 276 6.58e-43 149
MsG0280007031.01.T01 AT1G02400 37.555 229 80 4 29 198 25 249 1.43e-41 144
MsG0280007031.01.T01 AT1G15550 27.090 299 126 9 10 246 40 308 5.05e-21 92.0
MsG0280007031.01.T01 AT2G38240 25.430 291 123 11 28 253 48 309 6.23e-19 85.9
MsG0280007031.01.T01 AT1G80340 37.398 123 52 2 128 250 208 305 2.11e-18 84.3
MsG0280007031.01.T01 AT1G80330 24.028 283 125 8 28 247 49 304 6.89e-17 80.1
MsG0280007031.01.T01 AT3G55970 26.000 300 123 12 20 250 47 316 1.20e-16 79.3
MsG0280007031.01.T01 AT1G78550 25.517 290 122 13 22 246 47 307 2.57e-16 78.6
MsG0280007031.01.T01 AT4G10500 25.407 307 135 13 26 264 42 322 2.85e-16 78.2
MsG0280007031.01.T01 AT3G11180 22.936 327 152 10 10 264 69 367 6.11e-16 77.8
MsG0280007031.01.T01 AT3G11180 22.936 327 152 10 10 264 69 367 6.13e-16 77.8
MsG0280007031.01.T01 AT3G21420 25.497 302 126 12 14 246 41 312 2.29e-15 75.9
MsG0280007031.01.T01 AT1G78550 26.609 233 111 10 46 246 25 229 2.98e-15 74.7
MsG0280007031.01.T01 AT5G24530 27.208 283 116 12 25 246 35 288 3.07e-15 75.1
MsG0280007031.01.T01 AT3G12900 32.773 119 55 2 128 246 214 307 5.75e-15 74.7
MsG0280007031.01.T01 AT1G55290 35.000 120 52 3 128 246 218 312 7.40e-15 74.3
MsG0280007031.01.T01 AT3G13610 28.488 172 81 5 91 246 167 312 9.74e-15 73.9
MsG0280007031.01.T01 AT5G05600 22.830 311 136 12 10 246 40 320 2.64e-14 72.8
MsG0280007031.01.T01 AT2G36690 24.916 297 128 9 16 248 51 316 4.02e-14 72.0
MsG0280007031.01.T01 AT2G36690 24.916 297 128 9 16 248 51 316 4.02e-14 72.0
MsG0280007031.01.T01 AT4G21200 25.725 276 121 12 28 246 42 290 9.97e-14 70.9
MsG0280007031.01.T01 AT4G16330 24.199 281 123 11 28 246 67 319 1.75e-13 70.5
MsG0280007031.01.T01 AT1G12010 35.000 120 51 4 128 246 163 256 2.94e-13 69.3
MsG0280007031.01.T01 AT1G05010 36.364 121 49 5 128 246 160 254 3.14e-13 69.3
MsG0280007031.01.T01 AT4G16330 25.118 211 99 8 67 246 31 213 4.47e-13 68.2
MsG0280007031.01.T01 AT4G25310 34.188 117 50 4 128 243 211 301 5.09e-13 68.9
MsG0280007031.01.T01 AT1G62380 34.454 119 51 4 129 246 164 256 5.50e-13 68.6
MsG0280007031.01.T01 AT5G59530 31.852 135 66 3 109 243 201 309 6.58e-13 68.6
MsG0280007031.01.T01 AT1G06620 33.077 130 55 4 120 243 207 310 7.33e-13 68.6
MsG0280007031.01.T01 AT1G17020 33.333 117 51 4 128 243 216 306 9.24e-13 68.2
MsG0280007031.01.T01 AT4G22880 25.581 258 122 11 26 247 85 308 3.73e-12 66.2
MsG0280007031.01.T01 AT4G22880 25.581 258 122 11 26 247 85 308 3.73e-12 66.2
MsG0280007031.01.T01 AT4G22880 25.581 258 122 11 26 247 85 308 3.73e-12 66.2
MsG0280007031.01.T01 AT3G51240 33.333 120 54 4 128 246 116 210 4.79e-12 65.5
MsG0280007031.01.T01 AT1G77330 24.306 288 131 11 27 253 2 263 4.85e-12 65.9
MsG0280007031.01.T01 AT3G19000 24.272 309 125 12 12 237 8 290 6.48e-12 65.5
MsG0280007031.01.T01 AT1G04380 31.579 133 65 3 117 249 190 296 6.78e-12 65.5
MsG0280007031.01.T01 AT3G51240 33.333 120 54 4 128 246 200 294 8.23e-12 65.5
MsG0280007031.01.T01 AT3G61400 25.568 176 96 5 121 288 218 366 1.43e-11 64.7
MsG0280007031.01.T01 AT1G60980 29.167 144 71 5 106 249 213 325 1.81e-11 64.3
MsG0280007031.01.T01 AT1G06640 32.061 131 56 5 120 243 210 314 2.15e-11 64.3
MsG0280007031.01.T01 AT2G30840 32.558 129 60 4 121 248 211 313 3.76e-11 63.5
MsG0280007031.01.T01 AT1G06650 32.258 124 57 4 121 243 217 314 5.13e-11 63.2
MsG0280007031.01.T01 AT2G25450 30.534 131 58 5 120 243 200 304 5.71e-11 62.8
MsG0280007031.01.T01 AT1G06645 33.065 124 56 4 121 243 227 324 6.13e-11 62.8
MsG0280007031.01.T01 AT4G21690 29.457 129 63 4 128 253 209 312 7.54e-11 62.4

Find 70 sgRNAs with CRISPR-Local

Find 239 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GTGAAGGCTTGTAAGGAATT+TGG 0.190043 2:-9652725 MsG0280007031.01.T01:CDS
GAAGGAATTTGCTTGGGTTT+GGG 0.238321 2:-9651721 MsG0280007031.01.T01:CDS
TCTCAGTTTGGTTCGGCTTC+TGG 0.243473 2:-9649384 MsG0280007031.01.T01:CDS
GCTGGTCCTCCTGATCCTTT+TGG 0.285305 2:-9652600 MsG0280007031.01.T01:CDS
GGAAGGAATTTGCTTGGGTT+TGG 0.286862 2:-9651722 MsG0280007031.01.T01:CDS
CTATAAGAGTCTTTGCTTCC+GGG 0.305111 2:+9652747 None:intergenic
ATATGTTGGTGATACTCTTC+AGG 0.308745 2:-9651525 MsG0280007031.01.T01:intron
AAGTGTAAAGCATAGGGTTT+TGG 0.313870 2:-9650976 MsG0280007031.01.T01:CDS
CAGAGGACTATTTCTCAGTT+TGG 0.333765 2:-9649396 MsG0280007031.01.T01:CDS
CCATTCAACAAAGTTGTTGA+TGG 0.337243 2:+9652794 None:intergenic
CAATGTTGGTGATACTCTTC+AGG 0.338711 2:-9651579 MsG0280007031.01.T01:CDS
GTGAAAATCGACAAAATCTA+AGG 0.347346 2:-9652470 MsG0280007031.01.T01:intron
AATGCTGCTTGTTGCACCTC+AGG 0.352397 2:+9651749 None:intergenic
TTCCATCAGTGAGACAGATT+TGG 0.358775 2:+9651642 None:intergenic
ACTATAAGAGTCTTTGCTTC+CGG 0.371721 2:+9652746 None:intergenic
GACTATTTCTCAGTTTGGTT+CGG 0.372740 2:-9649391 MsG0280007031.01.T01:CDS
TTTGGTCCAGATTTGGCAGC+TGG 0.391188 2:-9649459 MsG0280007031.01.T01:intron
GTTTGGTTCGGCTTCTGGTC+AGG 0.393079 2:-9649379 MsG0280007031.01.T01:CDS
CCATCAACAACTTTGTTGAA+TGG 0.414722 2:-9652794 MsG0280007031.01.T01:CDS
GACTTGTTAGAGATAACATC+AGG 0.415017 2:+9652507 None:intergenic
AGTAAGAGAATTGGTTCAAA+TGG 0.422764 2:-9652570 MsG0280007031.01.T01:CDS
TCTTATAGTGAAGGCTTGTA+AGG 0.425136 2:-9652732 MsG0280007031.01.T01:CDS
TTCAAATGGTGATGTTGGTT+GGG 0.425962 2:-9652556 MsG0280007031.01.T01:CDS
GGTTATGGAAGTAAGAGAAT+TGG 0.429063 2:-9652579 MsG0280007031.01.T01:CDS
CGATTAGATATGTTATATGT+TGG 0.429113 2:-9651539 MsG0280007031.01.T01:CDS
TCTGTCTCACTGATGGAACT+TGG 0.437034 2:-9651637 MsG0280007031.01.T01:CDS
GTTCAAATGGTGATGTTGGT+TGG 0.453207 2:-9652557 MsG0280007031.01.T01:CDS
AGTAAGAAATTATTTAATGT+TGG 0.456630 2:+9652833 None:intergenic
CCTCAGGGCACGGTGGGTAA+TGG 0.461056 2:+9651765 None:intergenic
GAAATAGTCCTCTGTGTTGA+CGG 0.463302 2:+9649405 None:intergenic
CTCTTACTTCCATAACCAAA+AGG 0.467266 2:+9652585 None:intergenic
AAGGAATTTGCTTGGGTTTG+GGG 0.471960 2:-9651720 MsG0280007031.01.T01:CDS
GCAGCTGGTTCAGACTGGTT+TGG 0.475910 2:-9649444 MsG0280007031.01.T01:CDS
TTGAGATCTAATAGCACATC+AGG 0.476870 2:-9651668 MsG0280007031.01.T01:CDS
TCAAGACAGAAATGACTTGT+GGG 0.478331 2:+9651687 None:intergenic
TGAATGGAAGGAATTTGCTT+GGG 0.478641 2:-9651727 MsG0280007031.01.T01:CDS
CTTCCATAACCAAAAGGATC+AGG 0.481337 2:+9652591 None:intergenic
ATTTGGCAGCTGGTTCAGAC+TGG 0.485218 2:-9649449 MsG0280007031.01.T01:CDS
ATTGGTTCAAATGGTGATGT+TGG 0.487540 2:-9652561 MsG0280007031.01.T01:CDS
GTTTAAAAGTGTAAAGCATA+GGG 0.491250 2:-9650982 MsG0280007031.01.T01:CDS
TTGAATGGAAGGAATTTGCT+TGG 0.495411 2:-9651728 MsG0280007031.01.T01:CDS
TTGATGCAGGTATTGACTAA+TGG 0.496751 2:-9651008 MsG0280007031.01.T01:intron
ATGCTGCTTGTTGCACCTCA+GGG 0.501968 2:+9651750 None:intergenic
GCTTGTTGCACCTCAGGGCA+CGG 0.503859 2:+9651755 None:intergenic
TGTCGTCGACCTTGCAGACC+CGG 0.509378 2:-9652765 MsG0280007031.01.T01:CDS
GTGCAACAAGCAGCATTGAA+TGG 0.509603 2:-9651743 MsG0280007031.01.T01:CDS
GGTTTAAAAGTGTAAAGCAT+AGG 0.510882 2:-9650983 MsG0280007031.01.T01:CDS
CTGTCTCACTGATGGAACTT+GGG 0.516008 2:-9651636 MsG0280007031.01.T01:CDS
CATCAGGGTTAGTATTAAGA+AGG 0.519509 2:+9652523 None:intergenic
CTCCAAATCTGTCTCACTGA+TGG 0.526180 2:-9651644 MsG0280007031.01.T01:CDS
AACAAGCAGCATTGAATGGA+AGG 0.537153 2:-9651739 MsG0280007031.01.T01:CDS
TCTTTGCTTCCGGGTCTGCA+AGG 0.550301 2:+9652756 None:intergenic
AGGTTGTCGATGATATACTT+TGG 0.551047 2:-9650936 MsG0280007031.01.T01:CDS
CTCAAGACAGAAATGACTTG+TGG 0.553027 2:+9651686 None:intergenic
GCTATTATGTAGGTCTGCTG+TGG 0.561033 2:-9651923 MsG0280007031.01.T01:intron
GGGTCTGCAAGGTCGACGAC+AGG 0.566966 2:+9652767 None:intergenic
TTGTCGATGATATACTTTGG+AGG 0.583079 2:-9650933 MsG0280007031.01.T01:CDS
AGCAAAGACTCTTATAGTGA+AGG 0.588277 2:-9652741 MsG0280007031.01.T01:CDS
GTTGCACCTCAGGGCACGGT+GGG 0.593851 2:+9651759 None:intergenic
TGGCTGACACAACAAAGTCA+AGG 0.599938 2:-9650956 MsG0280007031.01.T01:CDS
TGCAGGTATTGACTAATGGT+AGG 0.608292 2:-9651004 MsG0280007031.01.T01:intron
CAGTCAGAGAAAGACAGAGC+TGG 0.620304 2:-9652618 MsG0280007031.01.T01:CDS
GGAATTTGGATTCTTCAAAG+TGG 0.621903 2:-9652711 MsG0280007031.01.T01:intron
TGTTGCACCTCAGGGCACGG+TGG 0.643786 2:+9651758 None:intergenic
TGGCTTAGACAAAACAACCA+TGG 0.648574 2:+9652853 None:intergenic
CCATAACCAAAAGGATCAGG+AGG 0.661844 2:+9652594 None:intergenic
CTTCTGGTCAGGCAAAAGTG+CGG 0.663580 2:-9649368 MsG0280007031.01.T01:CDS
CCATTACCCACCGTGCCCTG+AGG 0.681270 2:-9651765 MsG0280007031.01.T01:CDS
ACTTGTTAGAGATAACATCA+GGG 0.698450 2:+9652508 None:intergenic
CAACATTGCCGTCAACACAG+AGG 0.757090 2:-9649413 MsG0280007031.01.T01:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TTCAAATATATAATAATGAT+GGG + Chr2:9652495-9652514 None:intergenic 10.0%
!!! ATTTGAAATTAAAATTATTG+AGG + Chr2:9652524-9652543 None:intergenic 10.0%
!! AGTAAGAAATTATTTAATGT+TGG + Chr2:9649371-9649390 None:intergenic 15.0%
!! ATGAATAAAAAAAAGGTTAA+AGG + Chr2:9650776-9650795 None:intergenic 15.0%
!! ATTTAATGATTGACATTAAT+TGG + Chr2:9650919-9650938 None:intergenic 15.0%
!! GTTCAAATATATAATAATGA+TGG + Chr2:9652496-9652515 None:intergenic 15.0%
!! TATATATATAGAAAGTGAAT+AGG - Chr2:9651553-9651572 MsG0280007031.01.T01:CDS 15.0%
!! TATGTTTATTCATTTATCTA+TGG - Chr2:9651595-9651614 MsG0280007031.01.T01:CDS 15.0%
!! TCAAATATATAATAATGATG+GGG + Chr2:9652494-9652513 None:intergenic 15.0%
!! TTGTAAAATTGAAAATTGTA+CGG - Chr2:9649926-9649945 MsG0280007031.01.T01:intron 15.0%
!!! AATTTTCTTTATTAGTCATT+TGG + Chr2:9649887-9649906 None:intergenic 15.0%
!!! CTTTTTTTTAACATTAAAGA+TGG + Chr2:9651325-9651344 None:intergenic 15.0%
!!! GTTTTTTTTTGATACTAAAA+AGG + Chr2:9651076-9651095 None:intergenic 15.0%
!!! TATTTTTCTCTTTTTAAATG+TGG - Chr2:9651028-9651047 MsG0280007031.01.T01:intron 15.0%
!! AAAATTATTAGAGGAAAGAT+CGG + Chr2:9652024-9652043 None:intergenic 20.0%
!! AAATTAAAATTATTGAGGCA+GGG + Chr2:9652519-9652538 None:intergenic 20.0%
!! AAATTTAAATGGAATACATG+TGG + Chr2:9651103-9651122 None:intergenic 20.0%
!! AATTTAAATGGAATACATGT+GGG + Chr2:9651102-9651121 None:intergenic 20.0%
!! AGAAAAAAGTCAAATGTATT+TGG - Chr2:9652358-9652377 MsG0280007031.01.T01:intron 20.0%
!! ATGTGTAATTTATACATGTT+TGG + Chr2:9650209-9650228 None:intergenic 20.0%
!! CAAATATATAATAATGATGG+GGG + Chr2:9652493-9652512 None:intergenic 20.0%
!! CATTGCAATAACAATAAATA+GGG + Chr2:9651663-9651682 None:intergenic 20.0%
!! GAAACATTTATTCTTAATTG+CGG - Chr2:9652714-9652733 MsG0280007031.01.T01:CDS 20.0%
!! TATATACGAAATGAAATTAG+AGG + Chr2:9652232-9652251 None:intergenic 20.0%
!! TCATTGCAATAACAATAAAT+AGG + Chr2:9651664-9651683 None:intergenic 20.0%
!! TGATAAGAATGAATATGTAA+AGG + Chr2:9651928-9651947 None:intergenic 20.0%
!! TGTGTATTGAAAATTATTAG+AGG + Chr2:9652033-9652052 None:intergenic 20.0%
!! TGTTGAATATGTTACATAAA+GGG + Chr2:9652563-9652582 None:intergenic 20.0%
!! TTATACCAAGTTGTAAAAAA+TGG + Chr2:9650118-9650137 None:intergenic 20.0%
!! TTGTTGAATATGTTACATAA+AGG + Chr2:9652564-9652583 None:intergenic 20.0%
!! TTTAACATTAAAGATGGTAA+AGG + Chr2:9651319-9651338 None:intergenic 20.0%
!!! AAATGTGTCAAATTTCTTTT+TGG - Chr2:9652258-9652277 MsG0280007031.01.T01:intron 20.0%
!!! AATTCTAAAACTTATAGTAC+TGG + Chr2:9652469-9652488 None:intergenic 20.0%
!!! AATTTCTTTTTGGATAGATT+TGG - Chr2:9652268-9652287 MsG0280007031.01.T01:intron 20.0%
!!! ATAAATTAGTCTCAAATCTA+CGG + Chr2:9652628-9652647 None:intergenic 20.0%
!!! CTAAATATACCTTTTCAATT+TGG + Chr2:9651801-9651820 None:intergenic 20.0%
!!! GAGTCTTATGAATAAAAAAA+AGG + Chr2:9650783-9650802 None:intergenic 20.0%
!!! TCCATTTAAATTTTTGAAGT+GGG - Chr2:9651110-9651129 MsG0280007031.01.T01:intron 20.0%
!!! TGGTTTAATTGTTTTAATCA+TGG - Chr2:9649856-9649875 MsG0280007031.01.T01:intron 20.0%
!!! TTCCATTTAAATTTTTGAAG+TGG - Chr2:9651109-9651128 MsG0280007031.01.T01:intron 20.0%
! AAATTGGACATAAATTCCAA+TGG + Chr2:9649530-9649549 None:intergenic 25.0%
! AACATTGAAAAGGAAAAACA+GGG + Chr2:9649792-9649811 None:intergenic 25.0%
! AACTTGGTATAATGTATGTT+TGG - Chr2:9650126-9650145 MsG0280007031.01.T01:intron 25.0%
! AATTAAAATTATTGAGGCAG+GGG + Chr2:9652518-9652537 None:intergenic 25.0%
! ACAAAAGTGAATCCATTATA+AGG - Chr2:9650159-9650178 MsG0280007031.01.T01:intron 25.0%
! AGAAAAATAATTGAGAGACT+TGG + Chr2:9651017-9651036 None:intergenic 25.0%
! AGCAATACGTCAAATATATT+TGG + Chr2:9652385-9652404 None:intergenic 25.0%
! AGTTTGATTGGTATAAGTAT+AGG - Chr2:9651751-9651770 MsG0280007031.01.T01:CDS 25.0%
! ATAAACACATAACTAACATG+AGG + Chr2:9650235-9650254 None:intergenic 25.0%
! ATGAAATTAGAGGAAAAGAT+CGG + Chr2:9652222-9652241 None:intergenic 25.0%
! ATTGGAATTTATGTCCAATT+TGG - Chr2:9649529-9649548 MsG0280007031.01.T01:intron 25.0%
! CGATTAGATATGTTATATGT+TGG - Chr2:9650662-9650681 MsG0280007031.01.T01:intron 25.0%
! GAAATTAAAATTATTGAGGC+AGG + Chr2:9652520-9652539 None:intergenic 25.0%
! GTTTGATTGGTATAAGTATA+GGG - Chr2:9651752-9651771 MsG0280007031.01.T01:CDS 25.0%
! TAAACACATAACTAACATGA+GGG + Chr2:9650234-9650253 None:intergenic 25.0%
! TAGAGATAACATCCTTATAA+TGG + Chr2:9650174-9650193 None:intergenic 25.0%
! TTAATTTCAAATTCTTCCCT+AGG - Chr2:9652532-9652551 MsG0280007031.01.T01:CDS 25.0%
! TTGAGACTAATTTATTTCGT+CGG - Chr2:9652633-9652652 MsG0280007031.01.T01:intron 25.0%
! TTTCTCATACTTAAGATTGA+GGG + Chr2:9652343-9652362 None:intergenic 25.0%
! TTTGATTGGTATAAGTATAG+GGG - Chr2:9651753-9651772 MsG0280007031.01.T01:CDS 25.0%
!! GGTTTAGAATTAATTTCAAC+CGG - Chr2:9650087-9650106 MsG0280007031.01.T01:intron 25.0%
!! GTTTAAAAGTGTAAAGCATA+GGG - Chr2:9651219-9651238 MsG0280007031.01.T01:intron 25.0%
!! TTCTAAACCAATTTTTATCG+TGG + Chr2:9650076-9650095 None:intergenic 25.0%
!! TTTTCTCATACTTAAGATTG+AGG + Chr2:9652344-9652363 None:intergenic 25.0%
!!! AATTTTGGCTTCTTATGATA+AGG + Chr2:9652311-9652330 None:intergenic 25.0%
!!! ACTTCTTTTTTCATCAATGT+TGG - Chr2:9650608-9650627 MsG0280007031.01.T01:intron 25.0%
!!! CATTTAAATTTTTGAAGTGG+GGG - Chr2:9651112-9651131 MsG0280007031.01.T01:intron 25.0%
!!! CCATTTAAATTTTTGAAGTG+GGG - Chr2:9651111-9651130 MsG0280007031.01.T01:intron 25.0%
!!! CTTTTCAATGTTGATAAAAC+CGG - Chr2:9649800-9649819 MsG0280007031.01.T01:intron 25.0%
!!! TCAATTTCTTCTAGTTTGAT+TGG - Chr2:9651739-9651758 MsG0280007031.01.T01:CDS 25.0%
!!! TTAGATTTTGTCGATTTTCA+CGG + Chr2:9649732-9649751 None:intergenic 25.0%
!!! TTGCCATAAGATTTTTCAAA+AGG + Chr2:9651427-9651446 None:intergenic 25.0%
AAAAAAGTAGAGTCAACTGT+TGG + Chr2:9651529-9651548 None:intergenic 30.0%
ACATTGAAAAGGAAAAACAG+GGG + Chr2:9649791-9649810 None:intergenic 30.0%
AGAAAGCAATGTACAATTCA+AGG - Chr2:9651381-9651400 MsG0280007031.01.T01:intron 30.0%
AGAAATTTGACACATTTGCT+AGG + Chr2:9652255-9652274 None:intergenic 30.0%
CAACATTGAAAAGGAAAAAC+AGG + Chr2:9649793-9649812 None:intergenic 30.0%
CCATAAACTGAAAATCTCAT+CGG + Chr2:9649839-9649858 None:intergenic 30.0%
CCCCACTTCAAAAATTTAAA+TGG + Chr2:9651114-9651133 None:intergenic 30.0%
CCTCAAAAAATTCTGAATGT+TGG - Chr2:9651459-9651478 MsG0280007031.01.T01:intron 30.0%
GGTTATCAAACATTCTAACT+TGG - Chr2:9651146-9651165 MsG0280007031.01.T01:intron 30.0%
GTGAAAATCGACAAAATCTA+AGG - Chr2:9649731-9649750 MsG0280007031.01.T01:intron 30.0%
TACATAAAGGGAAATACCTA+GGG + Chr2:9652551-9652570 None:intergenic 30.0%
TAGAATTAATTTCAACCGGT+TGG - Chr2:9650091-9650110 MsG0280007031.01.T01:intron 30.0%
TCATGTTGTGAAAATTAGAC+CGG + Chr2:9650031-9650050 None:intergenic 30.0%
TGAGACTAATTTATTTCGTC+GGG - Chr2:9652634-9652653 MsG0280007031.01.T01:intron 30.0%
TTACATAAAGGGAAATACCT+AGG + Chr2:9652552-9652571 None:intergenic 30.0%
! ACTTGTTAGAGATAACATCA+GGG + Chr2:9649696-9649715 None:intergenic 30.0%
! AGTAAGAGAATTGGTTCAAA+TGG - Chr2:9649631-9649650 MsG0280007031.01.T01:intron 30.0%
! AGTTTTGCCACGATAAAAAT+TGG - Chr2:9650066-9650085 MsG0280007031.01.T01:intron 30.0%
! ATGAAAAAAGAAGTGTGATC+AGG + Chr2:9650602-9650621 None:intergenic 30.0%
! ATTTGGAAAATGAAGCACTA+AGG - Chr2:9649546-9649565 MsG0280007031.01.T01:intron 30.0%
! GGTTTAAAAGTGTAAAGCAT+AGG - Chr2:9651218-9651237 MsG0280007031.01.T01:intron 30.0%
! TAGTGCTTCATTTTCCAAAT+TGG + Chr2:9649546-9649565 None:intergenic 30.0%
!! ATGATATTTGGCCTTTCTTT+TGG - Chr2:9651485-9651504 MsG0280007031.01.T01:intron 30.0%
!! CGGTTTTATCAACATTGAAA+AGG + Chr2:9649802-9649821 None:intergenic 30.0%
!! TGAGGGTGCAAATTAAATTT+TGG + Chr2:9652326-9652345 None:intergenic 30.0%
!! TGATATTTGGCCTTTCTTTT+GGG - Chr2:9651486-9651505 MsG0280007031.01.T01:intron 30.0%
!! TGGCCTTTTGAAAAATCTTA+TGG - Chr2:9651421-9651440 MsG0280007031.01.T01:intron 30.0%
!!! CCAACATTCAGAATTTTTTG+AGG + Chr2:9651462-9651481 None:intergenic 30.0%
!!! GCTACTTTTTGCTATTATGT+AGG - Chr2:9650268-9650287 MsG0280007031.01.T01:intron 30.0%
!!! TGGTGAAGTTTTGAAACTTA+GGG + Chr2:9652449-9652468 None:intergenic 30.0%
!!! TTCTTAATTGCGGTGTTTTT+TGG - Chr2:9652724-9652743 MsG0280007031.01.T01:CDS 30.0%
!!! TTGGTCCATTTTTTACAACT+TGG - Chr2:9650110-9650129 MsG0280007031.01.T01:intron 30.0%
AATACGAGTCAAATGTGTGT+TGG - Chr2:9652666-9652685 MsG0280007031.01.T01:intron 35.0%
ACTATAAGAGTCTTTGCTTC+CGG + Chr2:9649458-9649477 None:intergenic 35.0%
AGACTAATTTATTTCGTCGG+GGG - Chr2:9652636-9652655 MsG0280007031.01.T01:intron 35.0%
AGCAAAGACTCTTATAGTGA+AGG - Chr2:9649460-9649479 MsG0280007031.01.T01:intron 35.0%
AGGTTGTCGATGATATACTT+TGG - Chr2:9651265-9651284 MsG0280007031.01.T01:intron 35.0%
CAGTCTTTGAATTGATCGAA+TGG + Chr2:9650959-9650978 None:intergenic 35.0%
CATTCGATCAATTCAAAGAC+TGG - Chr2:9650957-9650976 MsG0280007031.01.T01:CDS 35.0%
CCATCAACAACTTTGTTGAA+TGG - Chr2:9649407-9649426 MsG0280007031.01.T01:CDS 35.0%
CCATTCAACAAAGTTGTTGA+TGG + Chr2:9649410-9649429 None:intergenic 35.0%
CTCTTACTTCCATAACCAAA+AGG + Chr2:9649619-9649638 None:intergenic 35.0%
GAATGTTGGCACATGATATT+TGG - Chr2:9651473-9651492 MsG0280007031.01.T01:intron 35.0%
GAGACTAATTTATTTCGTCG+GGG - Chr2:9652635-9652654 MsG0280007031.01.T01:intron 35.0%
GGAACCACAAATAAACTTAG+GGG - Chr2:9651774-9651793 MsG0280007031.01.T01:intron 35.0%
GGAATTTGGATTCTTCAAAG+TGG - Chr2:9649490-9649509 MsG0280007031.01.T01:intron 35.0%
GGGAACCACAAATAAACTTA+GGG - Chr2:9651773-9651792 MsG0280007031.01.T01:CDS 35.0%
GGTTATGGAAGTAAGAGAAT+TGG - Chr2:9649622-9649641 MsG0280007031.01.T01:intron 35.0%
GTTGTAAAAAATGGACCAAC+CGG + Chr2:9650109-9650128 None:intergenic 35.0%
TAAATTCCAATGGAACACCA+TGG + Chr2:9649520-9649539 None:intergenic 35.0%
TCTTATAGTGAAGGCTTGTA+AGG - Chr2:9649469-9649488 MsG0280007031.01.T01:intron 35.0%
TGTTGGAATTAATGGCTGAT+GGG - Chr2:9650340-9650359 MsG0280007031.01.T01:intron 35.0%
TTGAGATCTAATAGCACATC+AGG - Chr2:9650533-9650552 MsG0280007031.01.T01:intron 35.0%
TTGTCGATGATATACTTTGG+AGG - Chr2:9651268-9651287 MsG0280007031.01.T01:intron 35.0%
! AAAAAAGAAGTGTGATCAGG+TGG + Chr2:9650599-9650618 None:intergenic 35.0%
! AACTTGCTTAACACATTCCT+TGG + Chr2:9650378-9650397 None:intergenic 35.0%
! AAGTGTAAAGCATAGGGTTT+TGG - Chr2:9651225-9651244 MsG0280007031.01.T01:intron 35.0%
! ATTGGTTCAAATGGTGATGT+TGG - Chr2:9649640-9649659 MsG0280007031.01.T01:intron 35.0%
! CATCAGGGTTAGTATTAAGA+AGG + Chr2:9649681-9649700 None:intergenic 35.0%
! CCGATGAGATTTTCAGTTTA+TGG - Chr2:9649836-9649855 MsG0280007031.01.T01:intron 35.0%
! CTGTCTAGTGTTGGAATTAA+TGG - Chr2:9650332-9650351 MsG0280007031.01.T01:intron 35.0%
! GACTATTTCTCAGTTTGGTT+CGG - Chr2:9652810-9652829 MsG0280007031.01.T01:CDS 35.0%
! TCAAGACAGAAATGACTTGT+GGG + Chr2:9650517-9650536 None:intergenic 35.0%
! TGAATGGAAGGAATTTGCTT+GGG - Chr2:9650474-9650493 MsG0280007031.01.T01:intron 35.0%
! TTCAAATGGTGATGTTGGTT+GGG - Chr2:9649645-9649664 MsG0280007031.01.T01:intron 35.0%
! TTGAATGGAAGGAATTTGCT+TGG - Chr2:9650473-9650492 MsG0280007031.01.T01:intron 35.0%
!! ATATGTTGGTGATACTCTTC+AGG - Chr2:9650676-9650695 MsG0280007031.01.T01:intron 35.0%
!! GACTTGTTAGAGATAACATC+AGG + Chr2:9649697-9649716 None:intergenic 35.0%
!! GTTGATGACGTGTAATTGTT+TGG + Chr2:9652606-9652625 None:intergenic 35.0%
!! TTGATGCAGGTATTGACTAA+TGG - Chr2:9651193-9651212 MsG0280007031.01.T01:intron 35.0%
!!! CTGGTGAAGTTTTGAAACTT+AGG + Chr2:9652450-9652469 None:intergenic 35.0%
!!! GGTGAAGTTTTGAAACTTAG+GGG + Chr2:9652448-9652467 None:intergenic 35.0%
!!! TAATGGATTCACTTTTGTCG+TGG + Chr2:9650157-9650176 None:intergenic 35.0%
!!! TTGTCGATTTTCACGGTAAA+AGG + Chr2:9649725-9649744 None:intergenic 35.0%
AGCAATGTACAATTCAAGGC+TGG - Chr2:9651385-9651404 MsG0280007031.01.T01:intron 40.0%
CTATAAGAGTCTTTGCTTCC+GGG + Chr2:9649457-9649476 None:intergenic 40.0%
CTCAAGACAGAAATGACTTG+TGG + Chr2:9650518-9650537 None:intergenic 40.0%
CTTAGGGGACCAAATTGAAA+AGG - Chr2:9651789-9651808 MsG0280007031.01.T01:intron 40.0%
CTTCCATAACCAAAAGGATC+AGG + Chr2:9649613-9649632 None:intergenic 40.0%
GAAAATGTGCTGTCTAGTGT+TGG - Chr2:9650323-9650342 MsG0280007031.01.T01:intron 40.0%
GAAATAGTCCTCTGTGTTGA+CGG + Chr2:9652799-9652818 None:intergenic 40.0%
GACATATACGAGTCATGTTC+TGG - Chr2:9650821-9650840 MsG0280007031.01.T01:intron 40.0%
GGGGAACCACAAATAAACTT+AGG - Chr2:9651772-9651791 MsG0280007031.01.T01:CDS 40.0%
GTATATGTCGAGAAAGGTCT+TGG + Chr2:9650810-9650829 None:intergenic 40.0%
GTGAAGGCTTGTAAGGAATT+TGG - Chr2:9649476-9649495 MsG0280007031.01.T01:intron 40.0%
GTGTGTGTTGAAATTGATGC+AGG - Chr2:9651180-9651199 MsG0280007031.01.T01:intron 40.0%
GTGTTGGAATTAATGGCTGA+TGG - Chr2:9650339-9650358 MsG0280007031.01.T01:intron 40.0%
GTTTGTACAAAGAGTTCACG+TGG - Chr2:9651348-9651367 MsG0280007031.01.T01:intron 40.0%
TGACTCGTATATGTCGAGAA+AGG + Chr2:9650816-9650835 None:intergenic 40.0%
TGGTCCCCTAAGTTTATTTG+TGG + Chr2:9651781-9651800 None:intergenic 40.0%
TTCCATCAGTGAGACAGATT+TGG + Chr2:9650562-9650581 None:intergenic 40.0%
TTCTTCAAAGTGGTGAACCA+TGG - Chr2:9649500-9649519 MsG0280007031.01.T01:intron 40.0%
! AACAAGCAGCATTGAATGGA+AGG - Chr2:9650462-9650481 MsG0280007031.01.T01:intron 40.0%
! AAGGAATTTGCTTGGGTTTG+GGG - Chr2:9650481-9650500 MsG0280007031.01.T01:intron 40.0%
! ACTATCTTTTCACTCAAGGG+TGG + Chr2:9651295-9651314 None:intergenic 40.0%
! AGGCACTATCTTTTCACTCA+AGG + Chr2:9651299-9651318 None:intergenic 40.0%
! CAGAGGACTATTTCTCAGTT+TGG - Chr2:9652805-9652824 MsG0280007031.01.T01:CDS 40.0%
! GAAGGAATTTGCTTGGGTTT+GGG - Chr2:9650480-9650499 MsG0280007031.01.T01:intron 40.0%
! GATCAAGTTGCAAATCGTAG+AGG - Chr2:9650989-9651008 MsG0280007031.01.T01:CDS 40.0%
! GGCACTATCTTTTCACTCAA+GGG + Chr2:9651298-9651317 None:intergenic 40.0%
! GTTCAAATGGTGATGTTGGT+TGG - Chr2:9649644-9649663 MsG0280007031.01.T01:intron 40.0%
!! AATTAATGGCTGATGGGTTG+GGG - Chr2:9650346-9650365 MsG0280007031.01.T01:intron 40.0%
!! CAATGTTGGTGATACTCTTC+AGG - Chr2:9650622-9650641 MsG0280007031.01.T01:intron 40.0%
!! GAATTAATGGCTGATGGGTT+GGG - Chr2:9650345-9650364 MsG0280007031.01.T01:intron 40.0%
!! TGCAGGTATTGACTAATGGT+AGG - Chr2:9651197-9651216 MsG0280007031.01.T01:intron 40.0%
!!! GGTGTTTTTTGGTCCAGATT+TGG - Chr2:9652735-9652754 MsG0280007031.01.T01:CDS 40.0%
AACGCGTACACCCAAAAGAA+AGG + Chr2:9651499-9651518 None:intergenic 45.0%
AAGATCGGCAAGACAATGCA+AGG + Chr2:9652009-9652028 None:intergenic 45.0%
ACGAGTCAAATGTGTGTTGG+TGG - Chr2:9652669-9652688 MsG0280007031.01.T01:intron 45.0%
ACGGTCAATAGTCCTATAGC+GGG + Chr2:9649972-9649991 None:intergenic 45.0%
CACGGTCAATAGTCCTATAG+CGG + Chr2:9649973-9649992 None:intergenic 45.0%
CCATAACCAAAAGGATCAGG+AGG + Chr2:9649610-9649629 None:intergenic 45.0%
CTCCAAATCTGTCTCACTGA+TGG - Chr2:9650557-9650576 MsG0280007031.01.T01:intron 45.0%
CTGTCTCACTGATGGAACTT+GGG - Chr2:9650565-9650584 MsG0280007031.01.T01:intron 45.0%
GCTATTATGTAGGTCTGCTG+TGG - Chr2:9650278-9650297 MsG0280007031.01.T01:intron 45.0%
GTACAAAGAGTTCACGTGGT+TGG - Chr2:9651352-9651371 MsG0280007031.01.T01:intron 45.0%
GTTGTGAAAATTAGACCGGC+CGG + Chr2:9650027-9650046 None:intergenic 45.0%
TCTGTCTCACTGATGGAACT+TGG - Chr2:9650564-9650583 MsG0280007031.01.T01:intron 45.0%
TGGCTGACACAACAAAGTCA+AGG - Chr2:9651245-9651264 MsG0280007031.01.T01:intron 45.0%
TTGTACGGTTGAACAAACCG+CGG - Chr2:9649941-9649960 MsG0280007031.01.T01:intron 45.0%
! AGGCTGGCTGATTATAGACT+TGG - Chr2:9651401-9651420 MsG0280007031.01.T01:intron 45.0%
! CGAGTCAAATGTGTGTTGGT+GGG - Chr2:9652670-9652689 MsG0280007031.01.T01:intron 45.0%
! GGAAGGAATTTGCTTGGGTT+TGG - Chr2:9650479-9650498 MsG0280007031.01.T01:intron 45.0%
! GGAATTAATGGCTGATGGGT+TGG - Chr2:9650344-9650363 MsG0280007031.01.T01:intron 45.0%
! GTGCAACAAGCAGCATTGAA+TGG - Chr2:9650458-9650477 MsG0280007031.01.T01:intron 45.0%
! TGAAGTGGGGGTCTGTTTTA+AGG - Chr2:9651124-9651143 MsG0280007031.01.T01:intron 45.0%
!! CCTCCTGATCCTTTTGGTTA+TGG - Chr2:9649607-9649626 MsG0280007031.01.T01:intron 45.0%
!! GAAGTGGGGGTCTGTTTTAA+GGG - Chr2:9651125-9651144 MsG0280007031.01.T01:intron 45.0%
!! TCTTTTGGGTGTACGCGTTT+GGG - Chr2:9651500-9651519 MsG0280007031.01.T01:intron 45.0%
!! TTCTTTTGGGTGTACGCGTT+TGG - Chr2:9651499-9651518 MsG0280007031.01.T01:intron 45.0%
ACCGTGTTTGAACCAACAGC+CGG - Chr2:9649987-9650006 MsG0280007031.01.T01:intron 50.0%
CAACATTGCCGTCAACACAG+AGG - Chr2:9652788-9652807 MsG0280007031.01.T01:CDS 50.0%
CAGTCAGAGAAAGACAGAGC+TGG - Chr2:9649583-9649602 MsG0280007031.01.T01:intron 50.0%
CTTCTGGTCAGGCAAAAGTG+CGG - Chr2:9652833-9652852 MsG0280007031.01.T01:CDS 50.0%
GCTCTGTCTTTCTCTGACTG+TGG + Chr2:9649583-9649602 None:intergenic 50.0%
GGTGAACCATGGTGTTCCAT+TGG - Chr2:9649511-9649530 MsG0280007031.01.T01:intron 50.0%
TCTGAACCAGCTGCCAAATC+TGG + Chr2:9652751-9652770 None:intergenic 50.0%
TTTGGTCCAGATTTGGCAGC+TGG - Chr2:9652742-9652761 MsG0280007031.01.T01:CDS 50.0%
! AATGCTGCTTGTTGCACCTC+AGG + Chr2:9650455-9650474 None:intergenic 50.0%
! ATGCTGCTTGTTGCACCTCA+GGG + Chr2:9650454-9650473 None:intergenic 50.0%
! ATTTGGCAGCTGGTTCAGAC+TGG - Chr2:9652752-9652771 MsG0280007031.01.T01:CDS 50.0%
! CAAATGTGTGTTGGTGGGTG+TGG - Chr2:9652675-9652694 MsG0280007031.01.T01:intron 50.0%
!! CATCGGTTCGATCACTGTTC+CGG + Chr2:9649822-9649841 None:intergenic 50.0%
!! TCCGGCTGTTGGTTCAAACA+CGG + Chr2:9649991-9650010 None:intergenic 50.0%
!! TCTCAGTTTGGTTCGGCTTC+TGG - Chr2:9652817-9652836 MsG0280007031.01.T01:CDS 50.0%
GTTTGAACCAACAGCCGGAC+TGG - Chr2:9649992-9650011 MsG0280007031.01.T01:intron 55.0%
TCTTTGCTTCCGGGTCTGCA+AGG + Chr2:9649448-9649467 None:intergenic 55.0%
! GCAGCTGGTTCAGACTGGTT+TGG - Chr2:9652757-9652776 MsG0280007031.01.T01:CDS 55.0%
! GCTGGTCCTCCTGATCCTTT+TGG - Chr2:9649601-9649620 MsG0280007031.01.T01:intron 55.0%
!! ATGGGTTGGGGATTGAGCCA+AGG - Chr2:9650358-9650377 MsG0280007031.01.T01:intron 55.0%
!! GTTTGGTTCGGCTTCTGGTC+AGG - Chr2:9652822-9652841 MsG0280007031.01.T01:CDS 55.0%
TGTCGTCGACCTTGCAGACC+CGG - Chr2:9649436-9649455 MsG0280007031.01.T01:CDS 60.0%
! GCTTGTTGCACCTCAGGGCA+CGG + Chr2:9650449-9650468 None:intergenic 60.0%
! TGTTGGTGGGTGTGGAGTGC+AGG - Chr2:9652683-9652702 MsG0280007031.01.T01:intron 60.0%
!! TCCTATAGCGGGTTGAGCCG+CGG + Chr2:9649961-9649980 None:intergenic 60.0%
ACCGCGGCTCAACCCGCTAT+AGG - Chr2:9649957-9649976 MsG0280007031.01.T01:intron 65.0%
CAACCAGCCAGTCCGGCTGT+TGG + Chr2:9650002-9650021 None:intergenic 65.0%
CCATTACCCACCGTGCCCTG+AGG - Chr2:9650436-9650455 MsG0280007031.01.T01:intron 65.0%
CCTCAGGGCACGGTGGGTAA+TGG + Chr2:9650439-9650458 None:intergenic 65.0%
GGGTCTGCAAGGTCGACGAC+AGG + Chr2:9649437-9649456 None:intergenic 65.0%
GTTGCACCTCAGGGCACGGT+GGG + Chr2:9650445-9650464 None:intergenic 65.0%
TGTTGCACCTCAGGGCACGG+TGG + Chr2:9650446-9650465 None:intergenic 65.0%
! GACTGGCTGGTTGAACCGGC+CGG - Chr2:9650009-9650028 MsG0280007031.01.T01:intron 65.0%
! GCCGGTTCAACCAGCCAGTC+CGG + Chr2:9650009-9650028 None:intergenic 65.0%
! TGGTGGGTGTGGAGTGCAGG+AGG - Chr2:9652686-9652705 MsG0280007031.01.T01:intron 65.0%
!! GAACCAACAGCCGGACTGGC+TGG - Chr2:9649996-9650015 MsG0280007031.01.T01:intron 65.0%
!! GCCGGACTGGCTGGTTGAAC+CGG - Chr2:9650005-9650024 MsG0280007031.01.T01:intron 65.0%
Chromosome Type Strat End Strand Name
Chr2 gene 9649350 9652873 9649350 ID=MsG0280007031.01;Name=MsG0280007031.01
Chr2 mRNA 9649350 9652873 9649350 ID=MsG0280007031.01.T01;Parent=MsG0280007031.01;Name=MsG0280007031.01.T01;_AED=0.25;_eAED=0.25;_QI=0|0|0|0.83|1|1|6|0|288
Chr2 exon 9652712 9652873 9652712 ID=MsG0280007031.01.T01:exon:8417;Parent=MsG0280007031.01.T01
Chr2 exon 9652471 9652637 9652471 ID=MsG0280007031.01.T01:exon:8416;Parent=MsG0280007031.01.T01
Chr2 exon 9651885 9651933 9651885 ID=MsG0280007031.01.T01:exon:8415;Parent=MsG0280007031.01.T01
Chr2 exon 9651526 9651792 9651526 ID=MsG0280007031.01.T01:exon:8414;Parent=MsG0280007031.01.T01
Chr2 exon 9650922 9651021 9650922 ID=MsG0280007031.01.T01:exon:8413;Parent=MsG0280007031.01.T01
Chr2 exon 9649350 9649471 9649350 ID=MsG0280007031.01.T01:exon:8412;Parent=MsG0280007031.01.T01
Chr2 CDS 9652712 9652873 9652712 ID=MsG0280007031.01.T01:cds;Parent=MsG0280007031.01.T01
Chr2 CDS 9652471 9652637 9652471 ID=MsG0280007031.01.T01:cds;Parent=MsG0280007031.01.T01
Chr2 CDS 9651885 9651933 9651885 ID=MsG0280007031.01.T01:cds;Parent=MsG0280007031.01.T01
Chr2 CDS 9651526 9651792 9651526 ID=MsG0280007031.01.T01:cds;Parent=MsG0280007031.01.T01
Chr2 CDS 9650922 9651021 9650922 ID=MsG0280007031.01.T01:cds;Parent=MsG0280007031.01.T01
Chr2 CDS 9649350 9649471 9649350 ID=MsG0280007031.01.T01:cds;Parent=MsG0280007031.01.T01
Gene Sequence

>MsG0280007031.01.T01

ATGGTTGTTTTGTCTAAGCCAACATTAAATAATTTCTTACTTGTCAAGTCATGCAAACCATCAACAACTTTGTTGAATGGTATTCCTGTCGTCGACCTTGCAGACCCGGAAGCAAAGACTCTTATAGTGAAGGCTTGTAAGGAATTTGGATTCTTCAAAGTGTCAGAGAAAGACAGAGCTGGTCCTCCTGATCCTTTTGGTTATGGAAGTAAGAGAATTGGTTCAAATGGTGATGTTGGTTGGGTTGAATATATCCTTCTTAATACTAACCCTGATGTTATCTCTAACAAGTCTCTTTCCTTTTACCGTGAAAATCGACAAAATCTAAGGTCTGCTGTGGAAGATTATATTGCTGCAATGAAGAAAATGTGCTGTCTAAATAACCATTACCCACCGTGCCCTGAGGTGCAACAAGCAGCATTGAATGGAAGGAATTTGCTTGGGTTTGGGGAGCATACAGACCCACAAGTCATTTCTGTCTTGAGATCTAATAGCACATCAGGACTCCAAATCTGTCTCACTGATGGAACTTGGGTTTCAGTTCCACCTGATCACACTTCTTTTTTCATCAATGTTGGTGATACTCTTCAGGTTCGTAGTTTTCGATATCGATTAGATATGTTATATGTTGGTGATACTCTTCAGGTATTGACTAATGGTAGGTTTAAAAGTGTAAAGCATAGGGTTTTGGCTGACACAACAAAGTCAAGGTTGTCGATGATATACTTTGGAGGACCACCCTTGAATTTGGCAGCTGGTTCAGACTGGTTTGGTGTTTTCACAACATTGCCGTCAACACAGAGGACTATTTCTCAGTTTGGTTCGGCTTCTGGTCAGGCAAAAGTGCGGTGCTCTTTCATGTTATGA

Protein sequence

>MsG0280007031.01.T01

MVVLSKPTLNNFLLVKSCKPSTTLLNGIPVVDLADPEAKTLIVKACKEFGFFKVSEKDRAGPPDPFGYGSKRIGSNGDVGWVEYILLNTNPDVISNKSLSFYRENRQNLRSAVEDYIAAMKKMCCLNNHYPPCPEVQQAALNGRNLLGFGEHTDPQVISVLRSNSTSGLQICLTDGTWVSVPPDHTSFFINVGDTLQVRSFRYRLDMLYVGDTLQVLTNGRFKSVKHRVLADTTKSRLSMIYFGGPPLNLAAGSDWFGVFTTLPSTQRTISQFGSASGQAKVRCSFML*