AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0280007108.01

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0280007108.01.T01 MTR_2g020860 97.602 417 10 0 56 472 72 488 0.0 843
MsG0280007108.01.T01 MTR_2g020860 97.602 417 10 0 56 472 54 470 0.0 841
MsG0280007108.01.T01 MTR_2g020860 97.260 292 8 0 56 347 72 363 0.0 587
MsG0280007108.01.T01 MTR_2g020860 97.260 292 8 0 56 347 54 345 0.0 587
MsG0280007108.01.T01 MTR_1g089630 56.452 434 145 9 54 474 47 449 7.75e-160 461
MsG0280007108.01.T01 MTR_1g089630 52.597 308 103 8 54 349 59 335 2.32e-93 288
MsG0280007108.01.T01 MTR_1g089630 52.649 302 106 7 54 346 59 332 5.87e-93 286
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0280007108.01.T01 AT3G21530 57.210 423 160 4 54 475 50 452 1.18e-165 476
MsG0280007108.01.T01 AT3G21530 57.210 423 160 4 54 475 50 452 1.18e-165 476
MsG0280007108.01.T01 AT3G21530 57.210 423 160 4 54 475 50 452 1.18e-165 476
MsG0280007108.01.T01 AT2G48030 56.675 397 133 6 65 458 54 414 6.12e-145 422
MsG0280007108.01.T01 AT3G21530 55.782 294 109 4 54 346 50 323 1.96e-103 312
MsG0280007108.01.T01 AT2G48030 51.579 285 102 3 65 349 54 302 1.98e-82 258

Find 102 sgRNAs with CRISPR-Local

Find 191 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AACAAGGGTGGATTATATTT+TGG 0.107607 2:-10716225 MsG0280007108.01.T01:CDS
TCTGATTTGGCTGCTGCTTT+AGG 0.143980 2:-10717439 MsG0280007108.01.T01:CDS
TGAACTTTCCATTTCTTAAT+AGG 0.197270 2:+10717352 None:intergenic
CAGTAGTAGCAGAAGCATTT+TGG 0.199938 2:-10717542 MsG0280007108.01.T01:CDS
TTGAATGTAGCAATCCTTAT+TGG 0.200113 2:+10717940 None:intergenic
CTGATTTGGCTGCTGCTTTA+GGG 0.213124 2:-10717438 MsG0280007108.01.T01:CDS
GCCAATGAAATTTCATTATC+AGG 0.232648 2:+10717706 None:intergenic
AAGATAGCATTTCCATATTC+AGG 0.234602 2:+10717385 None:intergenic
TTGCAGATGATGATGATTTC+AGG 0.238130 2:-10717324 MsG0280007108.01.T01:intron
ATCACTTCTGTCATTGGCCT+TGG 0.277584 2:+10716525 None:intergenic
GAGAGTTGGGCTCCTGAATA+TGG 0.297515 2:-10717397 MsG0280007108.01.T01:CDS
TTGGCAAATAGTAAAATTCT+TGG 0.303641 2:-10717688 MsG0280007108.01.T01:CDS
GAAATGCTATCTTATCTAAA+TGG 0.305196 2:-10717375 MsG0280007108.01.T01:CDS
ACCTGCTTCAAATTTGATCT+TGG 0.312481 2:+10717742 None:intergenic
CTTGGTTCAATAGAAGATAT+TGG 0.327660 2:-10717670 MsG0280007108.01.T01:CDS
TAGATCATTTAGATGAGAAT+TGG 0.328484 2:-10716813 MsG0280007108.01.T01:CDS
CTTGTTCTACAGCAGGTGTT+TGG 0.333863 2:-10716025 MsG0280007108.01.T01:CDS
TATGAGGCCTCTTTCTGATT+TGG 0.346188 2:-10717452 MsG0280007108.01.T01:CDS
AAGATATATACTTTGGCCTT+TGG 0.352998 2:+10716428 None:intergenic
TTGGAAGTGTTTCTTCTAGA+AGG 0.353571 2:-10717651 MsG0280007108.01.T01:CDS
GTGATTCAAGAAAGCCAATA+AGG 0.364954 2:-10717954 MsG0280007108.01.T01:CDS
TGTGATAGAATGGGTGCTTT+AGG 0.366131 2:-10719536 MsG0280007108.01.T01:CDS
TTGTTCTACAGCAGGTGTTT+GGG 0.372494 2:-10716024 MsG0280007108.01.T01:CDS
TGGTCCGATGCCTGATTCAT+TGG 0.383380 2:+10719644 None:intergenic
GTGCAGGGGACATGCAAGTA+TGG 0.387119 2:-10716248 MsG0280007108.01.T01:CDS
CCCAGTGTCTTAACATCAAT+TGG 0.387714 2:+10719624 None:intergenic
TCACCATACAAATTTGTTCC+AGG 0.391855 2:-10716191 MsG0280007108.01.T01:CDS
CCTTTGGCAATGATGACAAT+AGG 0.395626 2:+10716444 None:intergenic
AAGTTCATCACTTCTGTCAT+TGG 0.400780 2:+10716519 None:intergenic
ACCTGATAATGAAATTTCAT+TGG 0.400813 2:-10717707 MsG0280007108.01.T01:CDS
TGATAGTATTATGAGAAACT+TGG 0.402241 2:-10716552 MsG0280007108.01.T01:intron
CTAAATGGCCTATTAAGAAA+TGG 0.411752 2:-10717360 MsG0280007108.01.T01:CDS
ACAATTGATGTGCCATGGGC+AGG 0.435875 2:-10716862 MsG0280007108.01.T01:CDS
TACTCAGTAATTTCTTCTAA+AGG 0.437341 2:-10716164 MsG0280007108.01.T01:CDS
ATTGTTGAATATAGATGTGC+AGG 0.438891 2:-10716264 MsG0280007108.01.T01:intron
AATTCATATTCATATTCATA+AGG 0.453615 2:+10717590 None:intergenic
CAATGACCCTCCTCACATCT+TGG 0.456799 2:-10716758 MsG0280007108.01.T01:CDS
ATGTTTGTGATACATTTGTA+TGG 0.459207 2:-10719488 MsG0280007108.01.T01:intron
GTACTACGTACCAATGAATC+AGG 0.466657 2:-10719654 None:intergenic
CAAGATGTGAGGAGGGTCAT+TGG 0.467899 2:+10716759 None:intergenic
GCCAAGATCAAATTTGAAGC+AGG 0.468467 2:-10717743 MsG0280007108.01.T01:CDS
TTCTATGGAACAAGAAGATT+AGG 0.470772 2:+10715987 None:intergenic
ATAAGGAAAGGAAAACAAAC+AGG 0.479170 2:+10717607 None:intergenic
TGGAGTTCCGTGTGATAGAA+TGG 0.481573 2:-10719546 MsG0280007108.01.T01:CDS
ATTTGATCTTGGCATAATGT+TGG 0.485016 2:+10717753 None:intergenic
CGTAACTATATCATGACCTA+TGG 0.490511 2:-10719566 MsG0280007108.01.T01:CDS
GACCCTCCTCACATCTTGGC+AGG 0.496301 2:-10716754 MsG0280007108.01.T01:CDS
CCAATTGATGTTAAGACACT+GGG 0.498417 2:-10719624 MsG0280007108.01.T01:CDS
CAATTGATGTGCCATGGGCA+GGG 0.503875 2:-10716861 MsG0280007108.01.T01:CDS
GAACAAGAAGATTAGGAGGT+GGG 0.504128 2:+10715994 None:intergenic
AATTGATGTGCCATGGGCAG+GGG 0.509093 2:-10716860 MsG0280007108.01.T01:CDS
AAACAAACAGGAGATCTTGC+TGG 0.513619 2:+10717619 None:intergenic
AACAATGCAAGAAGCTGAAG+AGG 0.518016 2:-10716070 MsG0280007108.01.T01:CDS
CAGAGGAAGAGAAGTGTATG+AGG 0.522220 2:-10717468 MsG0280007108.01.T01:CDS
TTATATCTACCTTCACTATG+TGG 0.528452 2:+10716129 None:intergenic
CACCATACAAATTTGTTCCA+GGG 0.538159 2:-10716190 MsG0280007108.01.T01:CDS
GATGATGCAAAGGATTATGC+AGG 0.538311 2:-10716477 MsG0280007108.01.T01:CDS
AAATTTATTTCCCCTGCCCA+TGG 0.543644 2:+10716850 None:intergenic
GACCCTGGAACAAATTTGTA+TGG 0.543879 2:+10716188 None:intergenic
TCATCATGTTCTGAAATAGC+TGG 0.547224 2:+10717895 None:intergenic
ACCAATTGATGTTAAGACAC+TGG 0.550201 2:-10719625 MsG0280007108.01.T01:CDS
GCAGCAGCCAAATCAGAAAG+AGG 0.554483 2:+10717445 None:intergenic
CAGATTATTCATCACAGAGA+TGG 0.555610 2:-10716708 MsG0280007108.01.T01:CDS
ACACCACCTTGTTCTACAGC+AGG 0.562220 2:-10716032 MsG0280007108.01.T01:CDS
AACAAGAAGATTAGGAGGTG+GGG 0.567416 2:+10715995 None:intergenic
CAAACACCTGCTGTAGAACA+AGG 0.567770 2:+10716026 None:intergenic
GAAATTACTGAGTATGACCC+TGG 0.571356 2:+10716173 None:intergenic
GGAGTTCCGTGTGATAGAAT+GGG 0.580848 2:-10719545 MsG0280007108.01.T01:CDS
TCTATCACACGGAACTCCAT+AGG 0.582908 2:+10719550 None:intergenic
GATTACATTATTCTGAGTTG+AGG 0.586820 2:+10716094 None:intergenic
ATATTCATATTCATAAGGAA+AGG 0.589971 2:+10717595 None:intergenic
AAAAGACTATGATGATGCAA+AGG 0.592589 2:-10716487 MsG0280007108.01.T01:CDS
AGGCAACAATTGATGTGCCA+TGG 0.595680 2:-10716867 MsG0280007108.01.T01:CDS
TATGGAACAAGAAGATTAGG+AGG 0.596270 2:+10715990 None:intergenic
GGAACAAGAAGATTAGGAGG+TGG 0.597738 2:+10715993 None:intergenic
CCTCCTCACATCTTGGCAGG+AGG 0.601608 2:-10716751 MsG0280007108.01.T01:CDS
TTGTTGAATATAGATGTGCA+GGG 0.605213 2:-10716263 MsG0280007108.01.T01:intron
GGCAACAATTGATGTGCCAT+GGG 0.609365 2:-10716866 MsG0280007108.01.T01:CDS
ATGCAAGAAGCTGAAGAGGA+AGG 0.609790 2:-10716066 MsG0280007108.01.T01:CDS
ATGAGAAACTTGGAAAGCCA+AGG 0.611858 2:-10716542 MsG0280007108.01.T01:CDS
CCTCCTGCCAAGATGTGAGG+AGG 0.616298 2:+10716751 None:intergenic
ACTGCAAGATGTGAAGGCAG+AGG 0.616515 2:-10717485 MsG0280007108.01.T01:CDS
TAGAGAGATTGATGCTGATG+TGG 0.620168 2:-10717512 MsG0280007108.01.T01:CDS
AGACCTCCTGCCAAGATGTG+AGG 0.622131 2:+10716748 None:intergenic
TGTGAGGAGGGTCATTGGAA+CGG 0.624412 2:+10716764 None:intergenic
GGACATGCAAGTATGGAACA+AGG 0.628871 2:-10716241 MsG0280007108.01.T01:CDS
GAATATGAATTACTGTGAAG+AGG 0.633216 2:-10717578 MsG0280007108.01.T01:CDS
CCTATTGTCATCATTGCCAA+AGG 0.634053 2:-10716444 MsG0280007108.01.T01:CDS
TTCTGATCACCACATAGTGA+AGG 0.635252 2:-10716138 MsG0280007108.01.T01:CDS
CTCCTGCCAAGATGTGAGGA+GGG 0.636235 2:+10716752 None:intergenic
GACATGCAAGTATGGAACAA+GGG 0.657340 2:-10716240 MsG0280007108.01.T01:CDS
GGTGGCACTGCAAGATGTGA+AGG 0.658235 2:-10717491 MsG0280007108.01.T01:CDS
TGTATCACAAACATAGACTG+TGG 0.664658 2:+10719497 None:intergenic
ATGCAAGTATGGAACAAGGG+TGG 0.673589 2:-10716237 MsG0280007108.01.T01:CDS
CGTACCAATGAATCAGGCAT+CGG 0.676333 2:-10719648 None:intergenic
AGAGATTGATGCTGATGTGG+TGG 0.692117 2:-10717509 MsG0280007108.01.T01:CDS
TGTTGAATATAGATGTGCAG+GGG 0.692840 2:-10716262 MsG0280007108.01.T01:intron
AAAGCACCCATTCTATCACA+CGG 0.693705 2:+10719539 None:intergenic
TGATTCATAGAAGAATGCAA+TGG 0.746060 2:+10717790 None:intergenic
CAATTGATGTTAAGACACTG+GGG 0.779647 2:-10719623 MsG0280007108.01.T01:CDS
ACACCTGCTGTAGAACAAGG+TGG 0.780129 2:+10716029 None:intergenic
TAGGTCATGATATAGTTACG+CGG 0.780998 2:+10719569 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TATTATTATTATAAAAAAAA+TGG - Chr2:10717159-10717178 MsG0280007108.01.T01:intron 0.0%
!! AACTAATATATATAATCTTT+AGG + Chr2:10719295-10719314 None:intergenic 10.0%
!! ATATAAACTTATAAAAAAAG+TGG + Chr2:10716591-10716610 None:intergenic 10.0%
!! AATTCATATTCATATTCATA+AGG + Chr2:10718043-10718062 None:intergenic 15.0%
!!! AATTAATGGTTTTCTTAATA+GGG + Chr2:10718427-10718446 None:intergenic 15.0%
!!! TAATTAATGGTTTTCTTAAT+AGG + Chr2:10718428-10718447 None:intergenic 15.0%
!! AAATTGTACTCATAATTTAG+TGG - Chr2:10717650-10717669 MsG0280007108.01.T01:CDS 20.0%
!! ACCATTAATTATACTAGTAA+TGG - Chr2:10718437-10718456 MsG0280007108.01.T01:intron 20.0%
!! ACCATTACTAGTATAATTAA+TGG + Chr2:10718441-10718460 None:intergenic 20.0%
!! ATATGACTACAAATTAATCA+CGG - Chr2:10717068-10717087 MsG0280007108.01.T01:intron 20.0%
!! ATATTCATATTCATAAGGAA+AGG + Chr2:10718038-10718057 None:intergenic 20.0%
!! TAGGTTATTTAAAGATGATT+TGG - Chr2:10718549-10718568 MsG0280007108.01.T01:intron 20.0%
!!! ACTCTATTAGTTTTCTAAAA+TGG - Chr2:10716505-10716524 MsG0280007108.01.T01:CDS 20.0%
!!! GAATCTTTATTACTCTTTTT+GGG - Chr2:10716848-10716867 MsG0280007108.01.T01:CDS 20.0%
!!! GATTGTTTTAATATACTCTT+TGG + Chr2:10717819-10717838 None:intergenic 20.0%
!!! TCAAATTTTAGCTTATAGAA+TGG + Chr2:10716982-10717001 None:intergenic 20.0%
!!! TCGTTTTAAAAAAGTTTGAA+TGG - Chr2:10716826-10716845 MsG0280007108.01.T01:CDS 20.0%
! AAATGCTTATGTTTAGTGTA+TGG - Chr2:10716481-10716500 MsG0280007108.01.T01:CDS 25.0%
! AATTATACTAGTAATGGTGA+AGG - Chr2:10718443-10718462 MsG0280007108.01.T01:intron 25.0%
! ACGTTATATGAGTGATTTAA+AGG - Chr2:10716218-10716237 MsG0280007108.01.T01:CDS 25.0%
! ATCTTCTGAACAATCAAATA+AGG + Chr2:10718349-10718368 None:intergenic 25.0%
! ATGTTTGTGATACATTTGTA+TGG - Chr2:10716142-10716161 MsG0280007108.01.T01:CDS 25.0%
! ATTTGCAACTTTAACATCAA+AGG + Chr2:10716295-10716314 None:intergenic 25.0%
! CGTTATATGAGTGATTTAAA+GGG - Chr2:10716219-10716238 MsG0280007108.01.T01:CDS 25.0%
! CTGGACTTAATTATATTCAA+TGG - Chr2:10716343-10716362 MsG0280007108.01.T01:intron 25.0%
! GAAATGCTATCTTATCTAAA+TGG - Chr2:10718255-10718274 MsG0280007108.01.T01:intron 25.0%
! GAGTAGTAAGATATATACTT+TGG + Chr2:10719212-10719231 None:intergenic 25.0%
! TACTCAGTAATTTCTTCTAA+AGG - Chr2:10719466-10719485 MsG0280007108.01.T01:intron 25.0%
! TAGATCATTTAGATGAGAAT+TGG - Chr2:10718817-10718836 MsG0280007108.01.T01:intron 25.0%
! TATGACTACAAATTAATCAC+GGG - Chr2:10717069-10717088 MsG0280007108.01.T01:intron 25.0%
! TCTTCTGAACAATCAAATAA+GGG + Chr2:10718348-10718367 None:intergenic 25.0%
! TGAACTTTCCATTTCTTAAT+AGG + Chr2:10718281-10718300 None:intergenic 25.0%
! TGATAGTATTATGAGAAACT+TGG - Chr2:10719078-10719097 MsG0280007108.01.T01:intron 25.0%
! TGCATGAGAAATTTATGATT+TGG + Chr2:10717409-10717428 None:intergenic 25.0%
! TTGGCAAATAGTAAAATTCT+TGG - Chr2:10717942-10717961 MsG0280007108.01.T01:CDS 25.0%
!! ACCTGATAATGAAATTTCAT+TGG - Chr2:10717923-10717942 MsG0280007108.01.T01:CDS 25.0%
!! GGAATCTTTATTACTCTTTT+TGG - Chr2:10716847-10716866 MsG0280007108.01.T01:CDS 25.0%
!! GTCTGTTTAAGGTAAAAATA+TGG - Chr2:10718387-10718406 MsG0280007108.01.T01:intron 25.0%
!!! CAAGAATACTATTTCTACTA+TGG - Chr2:10717541-10717560 MsG0280007108.01.T01:CDS 25.0%
!!! TGAGTTGTTTTTTGATGATT+TGG + Chr2:10717631-10717650 None:intergenic 25.0%
!!! TTATTTTGCTTGTCTGTTTA+AGG - Chr2:10718376-10718395 MsG0280007108.01.T01:intron 25.0%
AAGATAGCATTTCCATATTC+AGG + Chr2:10718248-10718267 None:intergenic 30.0%
AGTTAGTGTTTGTTTGCATA+TGG - Chr2:10716437-10716456 MsG0280007108.01.T01:intron 30.0%
ATAAGGAAAGGAAAACAAAC+AGG + Chr2:10718026-10718045 None:intergenic 30.0%
ATTGCAAATGTTTGTGATGT+AGG - Chr2:10718730-10718749 MsG0280007108.01.T01:intron 30.0%
ATTGTTGAATATAGATGTGC+AGG - Chr2:10719366-10719385 MsG0280007108.01.T01:intron 30.0%
ATTTGATCTTGGCATAATGT+TGG + Chr2:10717880-10717899 None:intergenic 30.0%
CTAAATGGCCTATTAAGAAA+TGG - Chr2:10718270-10718289 MsG0280007108.01.T01:intron 30.0%
CTTGGTTCAATAGAAGATAT+TGG - Chr2:10717960-10717979 MsG0280007108.01.T01:CDS 30.0%
CTTTGTAACAATCATTGCAT+AGG + Chr2:10717044-10717063 None:intergenic 30.0%
GAAAAGCTAGTTAATGTGAT+AGG - Chr2:10718700-10718719 MsG0280007108.01.T01:intron 30.0%
GAATATGAATTACTGTGAAG+AGG - Chr2:10718052-10718071 MsG0280007108.01.T01:intron 30.0%
GATTACATTATTCTGAGTTG+AGG + Chr2:10719539-10719558 None:intergenic 30.0%
GCCAATGAAATTTCATTATC+AGG + Chr2:10717927-10717946 None:intergenic 30.0%
GTGTGATTAGAAGAAAACTT+AGG - Chr2:10717508-10717527 MsG0280007108.01.T01:CDS 30.0%
TGATTCATAGAAGAATGCAA+TGG + Chr2:10717843-10717862 None:intergenic 30.0%
TTATATCTACCTTCACTATG+TGG + Chr2:10719504-10719523 None:intergenic 30.0%
TTCAATGTACTCTTCAACTT+TGG - Chr2:10716245-10716264 MsG0280007108.01.T01:CDS 30.0%
TTGAATGTAGCAATCCTTAT+TGG + Chr2:10717693-10717712 None:intergenic 30.0%
TTGTTGAATATAGATGTGCA+GGG - Chr2:10719367-10719386 MsG0280007108.01.T01:intron 30.0%
! AAAAGACTATGATGATGCAA+AGG - Chr2:10719143-10719162 MsG0280007108.01.T01:intron 30.0%
! AAAGTTGAAGAGTACATTGA+AGG + Chr2:10716246-10716265 None:intergenic 30.0%
! AAGATATATACTTTGGCCTT+TGG + Chr2:10719205-10719224 None:intergenic 30.0%
! ATTTAAAGATGATTTGGCGA+AGG - Chr2:10718555-10718574 MsG0280007108.01.T01:intron 30.0%
! GGTCTAAAGTTGTTATCAAA+AGG - Chr2:10717574-10717593 MsG0280007108.01.T01:CDS 30.0%
! TTGATAACAACTTTAGACCT+TGG + Chr2:10717573-10717592 None:intergenic 30.0%
!! AATATGTTTTTGCTGAGAGT+TGG - Chr2:10718219-10718238 MsG0280007108.01.T01:intron 30.0%
!! ATATGTTTTTGCTGAGAGTT+GGG - Chr2:10718220-10718239 MsG0280007108.01.T01:intron 30.0%
!! CTTCATTTTTCACTGCTATA+TGG - Chr2:10719007-10719026 MsG0280007108.01.T01:intron 30.0%
!! TATTTTACAACCGACTTTGA+GGG - Chr2:10718648-10718667 MsG0280007108.01.T01:intron 30.0%
!! TTTAGCACCATAATTTGTTG+TGG + Chr2:10717386-10717405 None:intergenic 30.0%
!!! AACAAGGGTGGATTATATTT+TGG - Chr2:10719405-10719424 MsG0280007108.01.T01:intron 30.0%
!!! ACAAGGGTGGATTATATTTT+GGG - Chr2:10719406-10719425 MsG0280007108.01.T01:intron 30.0%
!!! AGTTTCTGTTTTTGTCGTTA+AGG - Chr2:10716173-10716192 MsG0280007108.01.T01:CDS 30.0%
!!! CAAATTTTCTAAGATGTGAG+AGG + Chr2:10719033-10719052 None:intergenic 30.0%
AAATTTGTACATGCACTGTG+TGG + Chr2:10716771-10716790 None:intergenic 35.0%
AAGTTCATCACTTCTGTCAT+TGG + Chr2:10719114-10719133 None:intergenic 35.0%
AATGTACTCTTCAACTTTGG+AGG - Chr2:10716248-10716267 MsG0280007108.01.T01:CDS 35.0%
ACAATAGAAGCTCAACAACA+TGG - Chr2:10717241-10717260 MsG0280007108.01.T01:intron 35.0%
ACCAATTGATGTTAAGACAC+TGG - Chr2:10716005-10716024 MsG0280007108.01.T01:CDS 35.0%
ACCTGCTTCAAATTTGATCT+TGG + Chr2:10717891-10717910 None:intergenic 35.0%
AGATGTGCCACAACAAATTA+TGG - Chr2:10717376-10717395 MsG0280007108.01.T01:CDS 35.0%
AGATTCTAACTACTCCACTA+TGG + Chr2:10717301-10717320 None:intergenic 35.0%
CAATTGATGTTAAGACACTG+GGG - Chr2:10716007-10716026 MsG0280007108.01.T01:CDS 35.0%
CAGATTATTCATCACAGAGA+TGG - Chr2:10718922-10718941 MsG0280007108.01.T01:intron 35.0%
CAGCAAACAACTACTATTAC+TGG - Chr2:10716324-10716343 MsG0280007108.01.T01:intron 35.0%
CAGTAATAGTAGTTGTTTGC+TGG + Chr2:10716326-10716345 None:intergenic 35.0%
CCAATTGATGTTAAGACACT+GGG - Chr2:10716006-10716025 MsG0280007108.01.T01:CDS 35.0%
CGTAACTATATCATGACCTA+TGG - Chr2:10716064-10716083 MsG0280007108.01.T01:CDS 35.0%
CTACACAGTTAAATTGAGAC+CGG + Chr2:10718532-10718551 None:intergenic 35.0%
GATTCTAACTACTCCACTAT+GGG + Chr2:10717300-10717319 None:intergenic 35.0%
GGCCTGTTTAGATTTAGAAA+AGG - Chr2:10716269-10716288 MsG0280007108.01.T01:intron 35.0%
GTGAAGAGTTACATGTAAAG+TGG - Chr2:10716409-10716428 MsG0280007108.01.T01:intron 35.0%
GTGATTCAAGAAAGCCAATA+AGG - Chr2:10717676-10717695 MsG0280007108.01.T01:CDS 35.0%
TAGGTCATGATATAGTTACG+CGG + Chr2:10716064-10716083 None:intergenic 35.0%
TATGGAACAAGAAGATTAGG+AGG + Chr2:10719643-10719662 None:intergenic 35.0%
TGTATCACAAACATAGACTG+TGG + Chr2:10716136-10716155 None:intergenic 35.0%
TGTTGAATATAGATGTGCAG+GGG - Chr2:10719368-10719387 MsG0280007108.01.T01:intron 35.0%
! CACCATACAAATTTGTTCCA+GGG - Chr2:10719440-10719459 MsG0280007108.01.T01:intron 35.0%
! GACAAGCGAAGTATTTATTG+TGG + Chr2:10717464-10717483 None:intergenic 35.0%
! GGCCTTTTCTAAATCTAAAC+AGG + Chr2:10716274-10716293 None:intergenic 35.0%
! TCACCATACAAATTTGTTCC+AGG - Chr2:10719439-10719458 MsG0280007108.01.T01:intron 35.0%
! TGCATATGGTGTTAGAAGTA+AGG - Chr2:10716451-10716470 MsG0280007108.01.T01:CDS 35.0%
! TTAAGGCTTGGTATGATGTT+GGG - Chr2:10716190-10716209 MsG0280007108.01.T01:CDS 35.0%
! TTGCAGATGATGATGATTTC+AGG - Chr2:10718306-10718325 MsG0280007108.01.T01:intron 35.0%
!! ATTTTACAACCGACTTTGAG+GGG - Chr2:10718649-10718668 MsG0280007108.01.T01:intron 35.0%
!! CTATTTTACAACCGACTTTG+AGG - Chr2:10718647-10718666 MsG0280007108.01.T01:intron 35.0%
!! CTTTTGTTGTCAACTCTCAT+TGG - Chr2:10717183-10717202 MsG0280007108.01.T01:intron 35.0%
!! GTGATGTAGGAATGTTTTGA+AGG - Chr2:10718743-10718762 MsG0280007108.01.T01:intron 35.0%
!! TCATCATGTTCTGAAATAGC+TGG + Chr2:10717738-10717757 None:intergenic 35.0%
!! TTGGAAGTGTTTCTTCTAGA+AGG - Chr2:10717979-10717998 MsG0280007108.01.T01:intron 35.0%
AAACAAACAGGAGATCTTGC+TGG + Chr2:10718014-10718033 None:intergenic 40.0%
AAATTTATTTCCCCTGCCCA+TGG + Chr2:10718783-10718802 None:intergenic 40.0%
AACAAGAAGATTAGGAGGTG+GGG + Chr2:10719638-10719657 None:intergenic 40.0%
AACAATGCAAGAAGCTGAAG+AGG - Chr2:10719560-10719579 MsG0280007108.01.T01:CDS 40.0%
AACTCAAATCCCCTCAAAGT+CGG + Chr2:10718661-10718680 None:intergenic 40.0%
AAGAAGTCAATAGCGTAGGT+AGG + Chr2:10716683-10716702 None:intergenic 40.0%
ACATGGAATTCGAACTCCTT+TGG + Chr2:10718474-10718493 None:intergenic 40.0%
ACTCTATCTATCTCCCATAG+TGG - Chr2:10717284-10717303 MsG0280007108.01.T01:intron 40.0%
AGCAAAGAAGTCAATAGCGT+AGG + Chr2:10716687-10716706 None:intergenic 40.0%
AGCTTCTATTGTGACACAAG+AGG + Chr2:10717233-10717252 None:intergenic 40.0%
ATAGCGTAGGTAGGAAAATG+AGG + Chr2:10716674-10716693 None:intergenic 40.0%
ATGAGAAACTTGGAAAGCCA+AGG - Chr2:10719088-10719107 MsG0280007108.01.T01:intron 40.0%
CAAGCATAGTTGTGAAGCAA+AGG + Chr2:10716732-10716751 None:intergenic 40.0%
CCCAGTGTCTTAACATCAAT+TGG + Chr2:10716009-10716028 None:intergenic 40.0%
CCTATTGTCATCATTGCCAA+AGG - Chr2:10719186-10719205 MsG0280007108.01.T01:intron 40.0%
CCTTTGGCAATGATGACAAT+AGG + Chr2:10719189-10719208 None:intergenic 40.0%
CGGTCTCAATTTAACTGTGT+AGG - Chr2:10718530-10718549 MsG0280007108.01.T01:intron 40.0%
GAAATTACTGAGTATGACCC+TGG + Chr2:10719460-10719479 None:intergenic 40.0%
GAACAAGAAGATTAGGAGGT+GGG + Chr2:10719639-10719658 None:intergenic 40.0%
GACATGCAAGTATGGAACAA+GGG - Chr2:10719390-10719409 MsG0280007108.01.T01:intron 40.0%
GACCCTGGAACAAATTTGTA+TGG + Chr2:10719445-10719464 None:intergenic 40.0%
GATGATGCAAAGGATTATGC+AGG - Chr2:10719153-10719172 MsG0280007108.01.T01:intron 40.0%
TAGAGAGATTGATGCTGATG+TGG - Chr2:10718118-10718137 MsG0280007108.01.T01:intron 40.0%
TATGAGGCCTCTTTCTGATT+TGG - Chr2:10718178-10718197 MsG0280007108.01.T01:intron 40.0%
TGACTTCTTTGCTCTCTGAA+AGG - Chr2:10716694-10716713 MsG0280007108.01.T01:CDS 40.0%
TGTGATAGAATGGGTGCTTT+AGG - Chr2:10716094-10716113 MsG0280007108.01.T01:CDS 40.0%
TTCTGATCACCACATAGTGA+AGG - Chr2:10719492-10719511 MsG0280007108.01.T01:CDS 40.0%
TTGTTCTACAGCAGGTGTTT+GGG - Chr2:10719606-10719625 MsG0280007108.01.T01:CDS 40.0%
TTGTTGTCAACTCTCATTGG+TGG - Chr2:10717186-10717205 MsG0280007108.01.T01:intron 40.0%
! AAAGCACCCATTCTATCACA+CGG + Chr2:10716094-10716113 None:intergenic 40.0%
! AATGGTGAAGGTGTAACCAA+AGG - Chr2:10718455-10718474 MsG0280007108.01.T01:intron 40.0%
! AGTTCTTGATCTTGGTAGTC+CGG - Chr2:10718510-10718529 MsG0280007108.01.T01:intron 40.0%
! GACTTCTTTGCTCTCTGAAA+GGG - Chr2:10716695-10716714 MsG0280007108.01.T01:CDS 40.0%
! GCCAAGATCAAATTTGAAGC+AGG - Chr2:10717887-10717906 MsG0280007108.01.T01:CDS 40.0%
! GTTAAGGCTTGGTATGATGT+TGG - Chr2:10716189-10716208 MsG0280007108.01.T01:CDS 40.0%
! TAAGGCTTGGTATGATGTTG+GGG - Chr2:10716191-10716210 MsG0280007108.01.T01:CDS 40.0%
!!! CAGTAGTAGCAGAAGCATTT+TGG - Chr2:10718088-10718107 MsG0280007108.01.T01:intron 40.0%
!!! CTGTTTTTGTCGTTAAGGCT+TGG - Chr2:10716178-10716197 MsG0280007108.01.T01:CDS 40.0%
AGAGATTGATGCTGATGTGG+TGG - Chr2:10718121-10718140 MsG0280007108.01.T01:intron 45.0%
AGGCAACAATTGATGTGCCA+TGG - Chr2:10718763-10718782 MsG0280007108.01.T01:intron 45.0%
ATGCAAGAAGCTGAAGAGGA+AGG - Chr2:10719564-10719583 MsG0280007108.01.T01:CDS 45.0%
ATGCAAGTATGGAACAAGGG+TGG - Chr2:10719393-10719412 MsG0280007108.01.T01:intron 45.0%
CAAACACCTGCTGTAGAACA+AGG + Chr2:10719607-10719626 None:intergenic 45.0%
CTATGCTTGCATGAGCATGA+CGG - Chr2:10716743-10716762 MsG0280007108.01.T01:CDS 45.0%
CTTGTTCTACAGCAGGTGTT+TGG - Chr2:10719605-10719624 MsG0280007108.01.T01:CDS 45.0%
GGAACAAGAAGATTAGGAGG+TGG + Chr2:10719640-10719659 None:intergenic 45.0%
GGACATGCAAGTATGGAACA+AGG - Chr2:10719389-10719408 MsG0280007108.01.T01:intron 45.0%
GGAGTTCCGTGTGATAGAAT+GGG - Chr2:10716085-10716104 MsG0280007108.01.T01:CDS 45.0%
GGCAACAATTGATGTGCCAT+GGG - Chr2:10718764-10718783 MsG0280007108.01.T01:intron 45.0%
TCTATCACACGGAACTCCAT+AGG + Chr2:10716083-10716102 None:intergenic 45.0%
TGCGTCACGTGATTACTACA+TGG + Chr2:10718491-10718510 None:intergenic 45.0%
TGGAGTTCCGTGTGATAGAA+TGG - Chr2:10716084-10716103 MsG0280007108.01.T01:CDS 45.0%
! ATCACTTCTGTCATTGGCCT+TGG + Chr2:10719108-10719127 None:intergenic 45.0%
! CAACTCTCATTGGTGGTAGT+TGG - Chr2:10717193-10717212 MsG0280007108.01.T01:intron 45.0%
! CAGAGGAAGAGAAGTGTATG+AGG - Chr2:10718162-10718181 MsG0280007108.01.T01:intron 45.0%
! GTTTTGTGCTTCGAGCTAGA+AGG - Chr2:10718678-10718697 MsG0280007108.01.T01:intron 45.0%
!! CTGATTTGGCTGCTGCTTTA+GGG - Chr2:10718192-10718211 MsG0280007108.01.T01:intron 45.0%
!! TCTGATTTGGCTGCTGCTTT+AGG - Chr2:10718191-10718210 MsG0280007108.01.T01:intron 45.0%
!! TTCTACTATGGAAGCGTCCA+AGG - Chr2:10717553-10717572 MsG0280007108.01.T01:CDS 45.0%
!!! ATTAATTAATTAATTGATTT+CGG + Chr2:10718614-10718633 None:intergenic 5.0%
AATTGATGTGCCATGGGCAG+GGG - Chr2:10718770-10718789 MsG0280007108.01.T01:intron 50.0%
ACAATTGATGTGCCATGGGC+AGG - Chr2:10718768-10718787 MsG0280007108.01.T01:intron 50.0%
ACACCACCTTGTTCTACAGC+AGG - Chr2:10719598-10719617 MsG0280007108.01.T01:CDS 50.0%
ACACCTGCTGTAGAACAAGG+TGG + Chr2:10719604-10719623 None:intergenic 50.0%
ACTGCAAGATGTGAAGGCAG+AGG - Chr2:10718145-10718164 MsG0280007108.01.T01:intron 50.0%
CAAGATGTGAGGAGGGTCAT+TGG + Chr2:10718874-10718893 None:intergenic 50.0%
CAATGACCCTCCTCACATCT+TGG - Chr2:10718872-10718891 MsG0280007108.01.T01:intron 50.0%
CAATTGATGTGCCATGGGCA+GGG - Chr2:10718769-10718788 MsG0280007108.01.T01:intron 50.0%
CGTGACGCAGTTCTTGATCT+TGG - Chr2:10718502-10718521 MsG0280007108.01.T01:intron 50.0%
GAGAGTTGGGCTCCTGAATA+TGG - Chr2:10718233-10718252 MsG0280007108.01.T01:intron 50.0%
GCAGCAGCCAAATCAGAAAG+AGG + Chr2:10718188-10718207 None:intergenic 50.0%
GCTTGGTATGATGTTGGGGA+AGG - Chr2:10716195-10716214 MsG0280007108.01.T01:CDS 50.0%
TGTGAGGAGGGTCATTGGAA+CGG + Chr2:10718869-10718888 None:intergenic 50.0%
AGACCTCCTGCCAAGATGTG+AGG + Chr2:10718885-10718904 None:intergenic 55.0%
CTCCTGCCAAGATGTGAGGA+GGG + Chr2:10718881-10718900 None:intergenic 55.0%
GGTGGCACTGCAAGATGTGA+AGG - Chr2:10718139-10718158 MsG0280007108.01.T01:intron 55.0%
GTGCAGGGGACATGCAAGTA+TGG - Chr2:10719382-10719401 MsG0280007108.01.T01:intron 55.0%
CCTCCTCACATCTTGGCAGG+AGG - Chr2:10718879-10718898 MsG0280007108.01.T01:intron 60.0%
CCTCCTGCCAAGATGTGAGG+AGG + Chr2:10718882-10718901 None:intergenic 60.0%
GACCCTCCTCACATCTTGGC+AGG - Chr2:10718876-10718895 MsG0280007108.01.T01:intron 60.0%
Chromosome Type Strat End Strand Name
Chr2 gene 10715989 10719663 10715989 ID=MsG0280007108.01;Name=MsG0280007108.01
Chr2 mRNA 10715989 10719663 10715989 ID=MsG0280007108.01.T01;Parent=MsG0280007108.01;Name=MsG0280007108.01.T01;_AED=0.51;_eAED=0.51;_QI=0|0|0|0.8|1|1|5|0|484
Chr2 exon 10719489 10719663 10719489 ID=MsG0280007108.01.T01:exon:3458;Parent=MsG0280007108.01.T01
Chr2 exon 10717325 10717982 10717325 ID=MsG0280007108.01.T01:exon:3457;Parent=MsG0280007108.01.T01
Chr2 exon 10716693 10716900 10716693 ID=MsG0280007108.01.T01:exon:3456;Parent=MsG0280007108.01.T01
Chr2 exon 10716439 10716568 10716439 ID=MsG0280007108.01.T01:exon:3455;Parent=MsG0280007108.01.T01
Chr2 exon 10715989 10716272 10715989 ID=MsG0280007108.01.T01:exon:3454;Parent=MsG0280007108.01.T01
Chr2 CDS 10719489 10719663 10719489 ID=MsG0280007108.01.T01:cds;Parent=MsG0280007108.01.T01
Chr2 CDS 10717325 10717982 10717325 ID=MsG0280007108.01.T01:cds;Parent=MsG0280007108.01.T01
Chr2 CDS 10716693 10716900 10716693 ID=MsG0280007108.01.T01:cds;Parent=MsG0280007108.01.T01
Chr2 CDS 10716439 10716568 10716439 ID=MsG0280007108.01.T01:cds;Parent=MsG0280007108.01.T01
Chr2 CDS 10715989 10716272 10715989 ID=MsG0280007108.01.T01:cds;Parent=MsG0280007108.01.T01
Gene Sequence

>MsG0280007108.01.T01

ATGAATCAGGCATCGGACCAATTGATGTTAAGACACTGGGGTAAAGCTTTAGACGTGATTTCAGATCAGCAACCGCGTAACTATATCATGACCTATGGAGTTCCGTGTGATAGAATGGGTGCTTTAGGCATGCTCATTACAGATCCACAGTCTATGTTTGTGATACATTTGTATGTGGAGTGTGATTCAAGAAAGCCAATAAGGATTGCTACATTCAATGTTGCTATGTTTTCATTAGCACCAGCTATTTCAGAACATGATGATTATGTTATGTATCATCAAAAGAAGAAAAATTCTAGTTCTTCAACAAGTGCTGAATTTCCAAAGAGTATATTAAAACAATCACCATTGCATTCTTCTATGAATCATTCAAACTCAGATACCAACATTATGCCAAGATCAAATTTGAAGCAGGTTTCAATTAATCTACCTGATAATGAAATTTCATTGGCAAATAGTAAAATTCTTGGTTCAATAGAAGATATTGGAAGTGTTTCTTCTAGAAGGAATCAAGTACCAGCAAGATCTCCTGTTTGTTTTCCTTTCCTTATGAATATGAATATGAATTACTGTGAAGAGGTGAATGAGAAATTCAGTAGTAGCAGAAGCATTTTGGAAGTTCTTAGAGAGATTGATGCTGATGTGGTGGCACTGCAAGATGTGAAGGCAGAGGAAGAGAAGTGTATGAGGCCTCTTTCTGATTTGGCTGCTGCTTTAGGGATGAAATATGTTTTTGCTGAGAGTTGGGCTCCTGAATATGGAAATGCTATCTTATCTAAATGGCCTATTAAGAAATGGAAAGTTCAGAAGATTGCAGATGATGATGATTTCAGGAATGTTTTGAAGGCAACAATTGATGTGCCATGGGCAGGGGAAATAAATTTGCACTCAACTCAACTAGATCATTTAGATGAGAATTGGAGAATGAAGCAAGTAAATGCAATAATCCGTTCCAATGACCCTCCTCACATCTTGGCAGGAGGTCTCAATTCTCTATATAGAGCAGATTATTCATCACAGAGATGGACAGACATTGTCAATTATTATGAGAAACTTGGAAAGCCAAGGCCAATGACAGAAGTGATGAACTTCATGAAATCAAAAGACTATGATGATGCAAAGGATTATGCAGGAGAATGTGAACCTATTGTCATCATTGCCAAAGGCCAAAATGTGCAGGGGACATGCAAGTATGGAACAAGGGTGGATTATATTTTGGGTTCATCAAAATCACCATACAAATTTGTTCCAGGGTCATACTCAGTAATTTCTTCTAAAGGAACTTCTGATCACCACATAGTGAAGGTAGATATAATGAAAGTAAATACCTCAACTCAGAATAATGTAATCAAACAATGCAAGAAGCTGAAGAGGAAGGTTGTGAGAAGAACACCACCTTGTTCTACAGCAGGTGTTTGGGAATTAACCCCACCTCCTAATCTTCTTGTTCCATAG
Protein sequence

>MsG0280007108.01.T01

MNQASDQLMLRHWGKALDVISDQQPRNYIMTYGVPCDRMGALGMLITDPQSMFVIHLYVECDSRKPIRIATFNVAMFSLAPAISEHDDYVMYHQKKKNSSSSTSAEFPKSILKQSPLHSSMNHSNSDTNIMPRSNLKQVSINLPDNEISLANSKILGSIEDIGSVSSRRNQVPARSPVCFPFLMNMNMNYCEEVNEKFSSSRSILEVLREIDADVVALQDVKAEEEKCMRPLSDLAAALGMKYVFAESWAPEYGNAILSKWPIKKWKVQKIADDDDFRNVLKATIDVPWAGEINLHSTQLDHLDENWRMKQVNAIIRSNDPPHILAGGLNSLYRADYSSQRWTDIVNYYEKLGKPRPMTEVMNFMKSKDYDDAKDYAGECEPIVIIAKGQNVQGTCKYGTRVDYILGSSKSPYKFVPGSYSVISSKGTSDHHIVKVDIMKVNTSTQNNVIKQCKKLKRKVVRRTPPCSTAGVWELTPPPNLLVP*