AlfalfaGEDB | MsG0280007110.01

M. sativa cultivar ZhongmuNo.1 / MsG0280007110.01

KEGG: K07305
GO: GO:0033743 GO:0055114
PFAM: PF01641

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0280007110.01.T01	RHN72370.1	90.909	154	14	0	9	162	16	169	3.55E-101	298

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0280007110.01.T01	Q10L32	80.147	136	25	1	24	157	1	136	6.49E-81	238

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0280007110.01.T01	A0A396J3C5	90.909	154	14	0	9	162	16	169	1.70e-101	298

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
MsG0280007110.01	MsG0280007327.01	0.800532	1.378702e-48	6.434931e-46

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0280007110.01.T01	MTR_2g020930	96.403	139	5	0	24	162	1	139	5.83e-100	284
MsG0280007110.01.T01	MTR_2g020950	92.086	139	10	1	24	162	1	138	3.64e-92	264
MsG0280007110.01.T01	MTR_4g092800	77.206	136	31	0	23	158	54	189	1.33e-78	231
MsG0280007110.01.T01	MTR_2g020900	74.809	131	32	1	32	162	20	149	4.41e-70	208
MsG0280007110.01.T01	MTR_8g461030	43.200	125	66	2	34	155	80	202	2.75e-30	109

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0280007110.01.T01	AT4G04830	76.978	139	32	0	24	162	1	139	1.04e-80	235
MsG0280007110.01.T01	AT4G21860	78.986	138	28	1	23	159	64	201	7.69e-80	235
MsG0280007110.01.T01	AT4G21860	78.986	138	28	1	23	159	64	201	7.69e-80	235
MsG0280007110.01.T01	AT4G21860	78.986	138	28	1	23	159	64	201	7.69e-80	235
MsG0280007110.01.T01	AT4G04810	73.723	137	36	0	24	160	1	137	2.41e-76	224
MsG0280007110.01.T01	AT4G04800	69.718	142	42	1	18	159	35	175	1.21e-72	216
MsG0280007110.01.T01	AT4G04830	70.504	139	31	1	24	162	1	129	2.08e-70	209
MsG0280007110.01.T01	AT4G21850	67.176	131	43	0	23	153	7	137	3.73e-68	203
MsG0280007110.01.T01	AT4G21840	63.380	142	46	1	24	159	1	142	2.11e-67	201
MsG0280007110.01.T01	AT4G21830	70.161	124	37	0	30	153	11	134	1.74e-66	199

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Find 51 sgRNAs with CRISPR-Local

Find 63 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAACTGCTCAGGTGAAAGAA+TGG	0.546804	2:+10780395	None:intergenic
AATTTGATTCAGGTTGTGGC+TGG	0.480441	2:-10779997	MsG0280007110.01.T01:CDS
ACACAATGACGTTCATCAGT+TGG	0.524963	2:+10779759	None:intergenic
ACAGAGCGATTGATAGCTCC+AGG	0.473234	2:+10779953	None:intergenic
ACCAAATTTGATTCAGGTTG+TGG	0.370623	2:-10780001	MsG0280007110.01.T01:CDS
ACTCAGTTCCTTTCTGGCGA+AGG	0.533241	2:+10780367	None:intergenic
AGCCTGATCCAGATGGTAGG+AGG	0.605106	2:-10779851	MsG0280007110.01.T01:CDS
AGCTTGTAGTCAGTCTTGTT+TGG	0.356294	2:-10779633	MsG0280007110.01.T01:three_prime_UTR
ATAACAAGTTCTTTGAAGAA+GGG	0.522344	2:-10780069	MsG0280007110.01.T01:CDS
ATAACTTGTGCAGCATGTGG+TGG	0.656642	2:-10779822	MsG0280007110.01.T01:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
ATAATTACTCAGTTCCTTTC+TGG	+	Chr2:10779749-10779768	None:intergenic	30.0%
ATTTACAATTGTACTGGATG+TGG	-	Chr2:10780061-10780080	MsG0280007110.01.T01:CDS	30.0%
TAATCCAATTTCATTGCCTA+AGG	+	Chr2:10779989-10780008	None:intergenic	30.0%
TCTTCTACCAAATTTGATTC+AGG	-	Chr2:10780100-10780119	MsG0280007110.01.T01:intron	30.0%
AGAACCTTAGGCAATGAAAT+TGG	-	Chr2:10779982-10780001	MsG0280007110.01.T01:CDS	35.0%
ATCATCAATCGAGAAATCTG+AGG	-	Chr2:10779677-10779696	MsG0280007110.01.T01:three_prime_UTR	35.0%
CACTTAGGTCATGTATTCAA+AGG	-	Chr2:10780309-10780328	MsG0280007110.01.T01:intron	35.0%
GAAGGGATTTACAATTGTAC+TGG	-	Chr2:10780055-10780074	MsG0280007110.01.T01:CDS	35.0%
GATTACATGTGCAGATTGAA+GGG	-	Chr2:10780004-10780023	MsG0280007110.01.T01:CDS	35.0%
GTCATGTATTCAAAGGTGAA+GGG	-	Chr2:10780316-10780335	MsG0280007110.01.T01:intron	35.0%

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Chromosome	Type	Strat	End	Strand	Name
Chr2	gene	10779560	10780569	10779560	ID=MsG0280007110.01;Name=MsG0280007110.01
Chr2	mRNA	10779560	10780569	10779560	ID=MsG0280007110.01.T01;Parent=MsG0280007110.01;Name=MsG0280007110.01.T01;_AED=0.40;_eAED=0.40;_QI=34\|1\|1\|1\|1\|1\|3\|147\|162
Chr2	exon	10779560	10779871	10779560	ID=MsG0280007110.01.T01:exon:2561;Parent=MsG0280007110.01.T01
Chr2	exon	10779955	10780111	10779955	ID=MsG0280007110.01.T01:exon:2560;Parent=MsG0280007110.01.T01
Chr2	exon	10780369	10780569	10780369	ID=MsG0280007110.01.T01:exon:2559;Parent=MsG0280007110.01.T01
Chr2	five_prime_UTR	10780536	10780569	10780536	ID=MsG0280007110.01.T01:five_prime_utr;Parent=MsG0280007110.01.T01
Chr2	CDS	10780369	10780535	10780369	ID=MsG0280007110.01.T01:cds;Parent=MsG0280007110.01.T01
Chr2	CDS	10779955	10780111	10779955	ID=MsG0280007110.01.T01:cds;Parent=MsG0280007110.01.T01
Chr2	CDS	10779707	10779871	10779707	ID=MsG0280007110.01.T01:cds;Parent=MsG0280007110.01.T01
Chr2	three_prime_UTR	10779560	10779706	10779560	ID=MsG0280007110.01.T01:three_prime_utr;Parent=MsG0280007110.01.T01

Gene Sequence

>MsG0280007110.01.T01

ATGATTCAATTTGATCACTATAAATTCCTTTTGCACGCACACTTGCTTGATGTAAATCAAAATAAGTCAATGGCATCAACAGCATCATCAATCGAGAAATCTGAGGAAGAATGGAGAGCCATTCTTTCACCTGAGCAGTTTCACATCCTTCGCCAGAAAGGAACTGAATTGAAGGGTACTGGAGAGTATAACAAGTTCTTTGAAGAAGGGATTTACAATTGTACTGGATGTGGAACTCCACTTTACAAGTCTTCTACCAAATTTGATTCAGGTTGTGGCTGGCCTGCTTTCTTTGAGGGTTTCCCTGGAGCTATCAATCGCTCTCCTGATCCAGATGGTAGGAGGACTGAGATAACTTGTGCAGCATGTGGTGGGCACTTAGGTCATGTATTCAAAGGTGAAGGGTTCAAGGTTCCAACTGATGAACGTCATTGTGTCAACAGTGTTTCTGTCAAGTTTATTCCCGGAAATGCTACTTCTTCCATATGA

Protein sequence

>MsG0280007110.01.T01

MIQFDHYKFLLHAHLLDVNQNKSMASTASSIEKSEEEWRAILSPEQFHILRQKGTELKGTGEYNKFFEEGIYNCTGCGTPLYKSSTKFDSGCGWPAFFEGFPGAINRSPDPDGRRTEITCAACGGHLGHVFKGEGFKVPTDERHCVNSVSVKFIPGNATSSI*