Alfalfa Gene Editing Database
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MsG0280007327.01.T01 | RHN72370.1 | 90.909 | 154 | 14 | 0 | 9 | 162 | 16 | 169 | 3.55E-101 | 298 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MsG0280007327.01.T01 | Q10L32 | 80.147 | 136 | 25 | 1 | 24 | 157 | 1 | 136 | 6.49E-81 | 238 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MsG0280007327.01.T01 | A0A396J3C5 | 90.909 | 154 | 14 | 0 | 9 | 162 | 16 | 169 | 1.70e-101 | 298 |
Gene ID | Type | Classification |
---|
Gene ID | Type | Classification |
---|
Co-expression Network
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
MsG0180000114.01 | MsG0280007327.01 | 0.823837 | 1.117291e-53 | 9.729755e-51 |
MsG0280007110.01 | MsG0280007327.01 | 0.800532 | 1.378702e-48 | 6.434931e-46 |
PPI
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MsG0280007327.01.T01 | MTR_2g020930 | 96.403 | 139 | 5 | 0 | 24 | 162 | 1 | 139 | 5.83e-100 | 284 |
MsG0280007327.01.T01 | MTR_2g020950 | 92.086 | 139 | 10 | 1 | 24 | 162 | 1 | 138 | 3.64e-92 | 264 |
MsG0280007327.01.T01 | MTR_4g092800 | 77.206 | 136 | 31 | 0 | 23 | 158 | 54 | 189 | 1.33e-78 | 231 |
MsG0280007327.01.T01 | MTR_2g020900 | 74.809 | 131 | 32 | 1 | 32 | 162 | 20 | 149 | 4.41e-70 | 208 |
MsG0280007327.01.T01 | MTR_8g461030 | 43.200 | 125 | 66 | 2 | 34 | 155 | 80 | 202 | 2.75e-30 | 109 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MsG0280007327.01.T01 | AT4G04830 | 76.978 | 139 | 32 | 0 | 24 | 162 | 1 | 139 | 1.04e-80 | 235 |
MsG0280007327.01.T01 | AT4G21860 | 78.986 | 138 | 28 | 1 | 23 | 159 | 64 | 201 | 7.69e-80 | 235 |
MsG0280007327.01.T01 | AT4G21860 | 78.986 | 138 | 28 | 1 | 23 | 159 | 64 | 201 | 7.69e-80 | 235 |
MsG0280007327.01.T01 | AT4G21860 | 78.986 | 138 | 28 | 1 | 23 | 159 | 64 | 201 | 7.69e-80 | 235 |
MsG0280007327.01.T01 | AT4G04810 | 73.723 | 137 | 36 | 0 | 24 | 160 | 1 | 137 | 2.41e-76 | 224 |
MsG0280007327.01.T01 | AT4G04800 | 69.718 | 142 | 42 | 1 | 18 | 159 | 35 | 175 | 1.21e-72 | 216 |
MsG0280007327.01.T01 | AT4G04830 | 70.504 | 139 | 31 | 1 | 24 | 162 | 1 | 129 | 2.08e-70 | 209 |
MsG0280007327.01.T01 | AT4G21850 | 67.176 | 131 | 43 | 0 | 23 | 153 | 7 | 137 | 3.73e-68 | 203 |
MsG0280007327.01.T01 | AT4G21840 | 63.380 | 142 | 46 | 1 | 24 | 159 | 1 | 142 | 2.11e-67 | 201 |
MsG0280007327.01.T01 | AT4G21830 | 70.161 | 124 | 37 | 0 | 30 | 153 | 11 | 134 | 1.74e-66 | 199 |
MsG0280007327.01.T01 | AT4G21830 | 70.161 | 124 | 37 | 0 | 30 | 153 | 14 | 137 | 5.27e-66 | 198 |
MsG0280007327.01.T01 | AT4G04840 | 63.768 | 138 | 50 | 0 | 16 | 153 | 9 | 146 | 8.75e-65 | 195 |
MsG0280007327.01.T01 | AT4G04810 | 74.118 | 85 | 22 | 0 | 24 | 108 | 1 | 85 | 8.59e-45 | 143 |
MsG0280007327.01.T01 | AT4G21860 | 72.222 | 90 | 25 | 0 | 25 | 114 | 67 | 156 | 3.25e-44 | 144 |
MsG0280007327.01.T01 | AT4G21850 | 61.628 | 86 | 33 | 0 | 23 | 108 | 7 | 92 | 1.96e-39 | 130 |
MsG0280007327.01.T01 | AT1G53670 | 47.154 | 123 | 60 | 3 | 34 | 153 | 74 | 194 | 2.37e-33 | 117 |
MsG0280007327.01.T01 | AT1G53670 | 41.463 | 123 | 60 | 4 | 34 | 153 | 74 | 187 | 7.28e-26 | 97.8 |
Find 53 sgRNAs with CRISPR-Local
Find 65 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
ATTAAATTTGTGAACGTTTC+AGG | 0.128184 | 2:+13672142 | None:intergenic |
ATAATTACTCAGTTCCTTTC+TGG | 0.153041 | 2:+13671957 | None:intergenic |
CCTTATAACAATAACTGTTT+TGG | 0.222670 | 2:+13671209 | None:intergenic |
CCAAAACAGTTATTGTTATA+AGG | 0.223362 | 2:-13671209 | MsG0280007327.01.T01:three_prime_UTR |
GCTTTCTTTGAGGGTTTCCC+TGG | 0.246507 | 2:-13671567 | MsG0280007327.01.T01:CDS |
TATGGAAGAAGTAGCATTTC+CGG | 0.273975 | 2:+13671306 | None:intergenic |
TCTTCTACCAAATTTGATTC+AGG | 0.294875 | 2:-13671603 | MsG0280007327.01.T01:CDS |
TTCTAGCTTGTAGTCTTGTT+TGG | 0.318244 | 2:-13671237 | MsG0280007327.01.T01:three_prime_UTR |
ATTACTTTATAATGAATTAG+AGG | 0.330162 | 2:-13671277 | MsG0280007327.01.T01:three_prime_UTR |
GCCACAACCTGAATCAAATT+TGG | 0.333002 | 2:+13671596 | None:intergenic |
GGCTGGCCTGCTTTCTTTGA+GGG | 0.344700 | 2:-13671576 | MsG0280007327.01.T01:CDS |
ACCAAATTTGATTCAGGTTG+TGG | 0.370623 | 2:-13671597 | MsG0280007327.01.T01:CDS |
TGGCTGGCCTGCTTTCTTTG+AGG | 0.381890 | 2:-13671577 | MsG0280007327.01.T01:CDS |
TTATAAAGTAATGTTTCATA+TGG | 0.390191 | 2:+13671288 | None:intergenic |
CTTTCTTTGAGGGTTTCCCT+GGG | 0.391349 | 2:-13671566 | MsG0280007327.01.T01:CDS |
GTTTCTGTCAAGTTTATTCC+CGG | 0.396456 | 2:-13671325 | MsG0280007327.01.T01:CDS |
TATAACAAGTTCTTTGAAGA+AGG | 0.421708 | 2:-13671666 | MsG0280007327.01.T01:CDS |
CAAGCAAGTGTGCGTGCAAA+AGG | 0.427139 | 2:+13672083 | None:intergenic |
GAAGGGATTTACAATTGTAC+TGG | 0.445202 | 2:-13671648 | MsG0280007327.01.T01:CDS |
ATGGAAGAAGTAGCATTTCC+GGG | 0.448524 | 2:+13671307 | None:intergenic |
ATCTCAGTCCTCCTACCATC+TGG | 0.449986 | 2:+13671439 | None:intergenic |
GGATTACATGTGCAGATTGA+AGG | 0.451748 | 2:-13671700 | MsG0280007327.01.T01:intron |
GTCCTCCTACCATCTGGATC+AGG | 0.457223 | 2:+13671445 | None:intergenic |
TCGAGAAATCTGAGGAAGAA+TGG | 0.462125 | 2:-13672018 | MsG0280007327.01.T01:CDS |
ATTCAAAGGTGAAGGGTTCA+AGG | 0.467580 | 2:-13671380 | MsG0280007327.01.T01:CDS |
ATGTGCAGATTGAAGGGTAC+TGG | 0.475174 | 2:-13671693 | MsG0280007327.01.T01:intron |
TAGCTTGTAGTCTTGTTTGG+TGG | 0.478609 | 2:-13671234 | MsG0280007327.01.T01:three_prime_UTR |
AATTTGATTCAGGTTGTGGC+TGG | 0.480441 | 2:-13671593 | MsG0280007327.01.T01:CDS |
TTGGTAGAAGACTTGTAAAG+TGG | 0.482126 | 2:+13671615 | None:intergenic |
ATTTACAATTGTACTGGATG+TGG | 0.487952 | 2:-13671642 | MsG0280007327.01.T01:CDS |
GGTCATGTATTCAAAGGTGA+AGG | 0.496687 | 2:-13671388 | MsG0280007327.01.T01:CDS |
CGAAGGATGTGAAACTGCTC+AGG | 0.522030 | 2:+13671980 | None:intergenic |
ATAACAAGTTCTTTGAAGAA+GGG | 0.522344 | 2:-13671665 | MsG0280007327.01.T01:CDS |
ACACAATGACGTTCATCAGT+TGG | 0.524963 | 2:+13671355 | None:intergenic |
TGTAAATCAAAATAAGTCAA+TGG | 0.526690 | 2:-13672059 | MsG0280007327.01.T01:CDS |
GATTACATGTGCAGATTGAA+GGG | 0.530242 | 2:-13671699 | MsG0280007327.01.T01:intron |
ACAGAGCGATTGATAGCCCC+AGG | 0.531190 | 2:+13671549 | None:intergenic |
ACTCAGTTCCTTTCTGGCGA+AGG | 0.533241 | 2:+13671963 | None:intergenic |
TTTCACATCCTTCGCCAGAA+AGG | 0.538872 | 2:-13671971 | MsG0280007327.01.T01:CDS |
AAACTGCTCAGGTGAAAGAA+TGG | 0.546804 | 2:+13671991 | None:intergenic |
GGGAAACCCTCAAAGAAAGC+AGG | 0.549621 | 2:+13671570 | None:intergenic |
GCAGCATGTGGTGGGCACTT+AGG | 0.567542 | 2:-13671409 | MsG0280007327.01.T01:CDS |
CACTTAGGTCATGTATTCAA+AGG | 0.577855 | 2:-13671394 | MsG0280007327.01.T01:CDS |
GTCATGTATTCAAAGGTGAA+GGG | 0.604484 | 2:-13671387 | MsG0280007327.01.T01:CDS |
AGCCTGATCCAGATGGTAGG+AGG | 0.605106 | 2:-13671447 | MsG0280007327.01.T01:CDS |
TAACTTGTGCAGCATGTGGT+GGG | 0.643462 | 2:-13671417 | MsG0280007327.01.T01:CDS |
TCAGTCTAAACTGTGCTCAG+TGG | 0.650903 | 2:+13671181 | None:intergenic |
ATAACTTGTGCAGCATGTGG+TGG | 0.656642 | 2:-13671418 | MsG0280007327.01.T01:CDS |
TTCAGCCTGATCCAGATGGT+AGG | 0.658719 | 2:-13671450 | MsG0280007327.01.T01:intron |
ATCATCAATCGAGAAATCTG+AGG | 0.659784 | 2:-13672026 | MsG0280007327.01.T01:CDS |
TTTCTTTGAGGGTTTCCCTG+GGG | 0.668641 | 2:-13671565 | MsG0280007327.01.T01:CDS |
GAGATAACTTGTGCAGCATG+TGG | 0.695279 | 2:-13671421 | MsG0280007327.01.T01:CDS |
CAGAGCGATTGATAGCCCCA+GGG | 0.720864 | 2:+13671550 | None:intergenic |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | TATAAATCAATTATAATCAT+CGG | + | Chr2:13671461-13671480 | None:intergenic | 10.0% |
!! | ATTACTTTATAATGAATTAG+AGG | - | Chr2:13672030-13672049 | MsG0280007327.01.T01:CDS | 15.0% |
!! | TTATAAAGTAATGTTTCATA+TGG | + | Chr2:13672022-13672041 | None:intergenic | 15.0% |
!! | ATTAAGTTCCATTATTATCA+TGG | + | Chr2:13671829-13671848 | None:intergenic | 20.0% |
!! | TGTAAATCAAAATAAGTCAA+TGG | - | Chr2:13671248-13671267 | MsG0280007327.01.T01:three_prime_UTR | 20.0% |
! | ATACATGATAATAGAACCTT+AGG | - | Chr2:13671574-13671593 | MsG0280007327.01.T01:CDS | 25.0% |
! | ATTAAATTTGTGAACGTTTC+AGG | + | Chr2:13671168-13671187 | None:intergenic | 25.0% |
! | CCAAAACAGTTATTGTTATA+AGG | - | Chr2:13672098-13672117 | MsG0280007327.01.T01:CDS | 25.0% |
! | CTATGAGTAAAATCAGATTA+TGG | - | Chr2:13671407-13671426 | MsG0280007327.01.T01:CDS | 25.0% |
! | CTTCTTAACCATGATAATAA+TGG | - | Chr2:13671818-13671837 | MsG0280007327.01.T01:intron | 25.0% |
!! | ATAACAAGTTCTTTGAAGAA+GGG | - | Chr2:13671642-13671661 | MsG0280007327.01.T01:CDS | 25.0% |
!! | CCTTATAACAATAACTGTTT+TGG | + | Chr2:13672101-13672120 | None:intergenic | 25.0% |
!! | TATAACAAGTTCTTTGAAGA+AGG | - | Chr2:13671641-13671660 | MsG0280007327.01.T01:CDS | 25.0% |
ATAATTACTCAGTTCCTTTC+TGG | + | Chr2:13671353-13671372 | None:intergenic | 30.0% | |
ATTTACAATTGTACTGGATG+TGG | - | Chr2:13671665-13671684 | MsG0280007327.01.T01:CDS | 30.0% | |
TAATCCAATTTCATTGCCTA+AGG | + | Chr2:13671593-13671612 | None:intergenic | 30.0% | |
TCTTCTACCAAATTTGATTC+AGG | - | Chr2:13671704-13671723 | MsG0280007327.01.T01:intron | 30.0% | |
AGAACCTTAGGCAATGAAAT+TGG | - | Chr2:13671586-13671605 | MsG0280007327.01.T01:CDS | 35.0% | |
ATCATCAATCGAGAAATCTG+AGG | - | Chr2:13671281-13671300 | MsG0280007327.01.T01:three_prime_UTR | 35.0% | |
CACTTAGGTCATGTATTCAA+AGG | - | Chr2:13671913-13671932 | MsG0280007327.01.T01:intron | 35.0% | |
GAAGGGATTTACAATTGTAC+TGG | - | Chr2:13671659-13671678 | MsG0280007327.01.T01:CDS | 35.0% | |
GATTACATGTGCAGATTGAA+GGG | - | Chr2:13671608-13671627 | MsG0280007327.01.T01:CDS | 35.0% | |
GTCATGTATTCAAAGGTGAA+GGG | - | Chr2:13671920-13671939 | MsG0280007327.01.T01:intron | 35.0% | |
GTTTCTGTCAAGTTTATTCC+CGG | - | Chr2:13671982-13672001 | MsG0280007327.01.T01:CDS | 35.0% | |
TATCATGCCATGAACTATTG+TGG | - | Chr2:13671526-13671545 | MsG0280007327.01.T01:intron | 35.0% | |
TATGGAAGAAGTAGCATTTC+CGG | + | Chr2:13672004-13672023 | None:intergenic | 35.0% | |
TTCATTGCCACAATAGTTCA+TGG | + | Chr2:13671536-13671555 | None:intergenic | 35.0% | |
TTGGTAGAAGACTTGTAAAG+TGG | + | Chr2:13671695-13671714 | None:intergenic | 35.0% | |
!! | ACCAAATTTGATTCAGGTTG+TGG | - | Chr2:13671710-13671729 | MsG0280007327.01.T01:intron | 35.0% |
!! | TTCTAGCTTGTAGTCTTGTT+TGG | - | Chr2:13672070-13672089 | MsG0280007327.01.T01:CDS | 35.0% |
AAACTGCTCAGGTGAAAGAA+TGG | + | Chr2:13671319-13671338 | None:intergenic | 40.0% | |
ACACAATGACGTTCATCAGT+TGG | + | Chr2:13671955-13671974 | None:intergenic | 40.0% | |
ATCTGGATCAGGCTGAAAAT+GGG | + | Chr2:13671854-13671873 | None:intergenic | 40.0% | |
ATGGAAGAAGTAGCATTTCC+GGG | + | Chr2:13672003-13672022 | None:intergenic | 40.0% | |
ATTCAAAGGTGAAGGGTTCA+AGG | - | Chr2:13671927-13671946 | MsG0280007327.01.T01:intron | 40.0% | |
GCCACAACCTGAATCAAATT+TGG | + | Chr2:13671714-13671733 | None:intergenic | 40.0% | |
GGATTACATGTGCAGATTGA+AGG | - | Chr2:13671607-13671626 | MsG0280007327.01.T01:CDS | 40.0% | |
GGTCATGTATTCAAAGGTGA+AGG | - | Chr2:13671919-13671938 | MsG0280007327.01.T01:intron | 40.0% | |
TCGAGAAATCTGAGGAAGAA+TGG | - | Chr2:13671289-13671308 | MsG0280007327.01.T01:exon | 40.0% | |
!! | AATTTGATTCAGGTTGTGGC+TGG | - | Chr2:13671714-13671733 | MsG0280007327.01.T01:intron | 40.0% |
!! | TAGCTTGTAGTCTTGTTTGG+TGG | - | Chr2:13672073-13672092 | MsG0280007327.01.T01:CDS | 40.0% |
CATCTGGATCAGGCTGAAAA+TGG | + | Chr2:13671855-13671874 | None:intergenic | 45.0% | |
TCAGTCTAAACTGTGCTCAG+TGG | + | Chr2:13672129-13672148 | None:intergenic | 45.0% | |
TTTCACATCCTTCGCCAGAA+AGG | - | Chr2:13671336-13671355 | MsG0280007327.01.T01:CDS | 45.0% | |
! | ATAACTTGTGCAGCATGTGG+TGG | - | Chr2:13671889-13671908 | MsG0280007327.01.T01:intron | 45.0% |
! | ATGTGCAGATTGAAGGGTAC+TGG | - | Chr2:13671614-13671633 | MsG0280007327.01.T01:CDS | 45.0% |
! | CATTTTCAGCCTGATCCAGA+TGG | - | Chr2:13671853-13671872 | MsG0280007327.01.T01:intron | 45.0% |
! | CTTTCTTTGAGGGTTTCCCT+GGG | - | Chr2:13671741-13671760 | MsG0280007327.01.T01:intron | 45.0% |
! | GAGATAACTTGTGCAGCATG+TGG | - | Chr2:13671886-13671905 | MsG0280007327.01.T01:intron | 45.0% |
! | TAACTTGTGCAGCATGTGGT+GGG | - | Chr2:13671890-13671909 | MsG0280007327.01.T01:intron | 45.0% |
! | TTTCTTTGAGGGTTTCCCTG+GGG | - | Chr2:13671742-13671761 | MsG0280007327.01.T01:intron | 45.0% |
ATCTCAGTCCTCCTACCATC+TGG | + | Chr2:13671871-13671890 | None:intergenic | 50.0% | |
CAAGCAAGTGTGCGTGCAAA+AGG | + | Chr2:13671227-13671246 | None:intergenic | 50.0% | |
CGAAGGATGTGAAACTGCTC+AGG | + | Chr2:13671330-13671349 | None:intergenic | 50.0% | |
GGGAAACCCTCAAAGAAAGC+AGG | + | Chr2:13671740-13671759 | None:intergenic | 50.0% | |
TTCAGCCTGATCCAGATGGT+AGG | - | Chr2:13671857-13671876 | MsG0280007327.01.T01:intron | 50.0% | |
! | ACTCAGTTCCTTTCTGGCGA+AGG | + | Chr2:13671347-13671366 | None:intergenic | 50.0% |
! | GCTTTCTTTGAGGGTTTCCC+TGG | - | Chr2:13671740-13671759 | MsG0280007327.01.T01:intron | 50.0% |
AGCCTGATCCAGATGGTAGG+AGG | - | Chr2:13671860-13671879 | MsG0280007327.01.T01:intron | 55.0% | |
GTCCTCCTACCATCTGGATC+AGG | + | Chr2:13671865-13671884 | None:intergenic | 55.0% | |
! | ACAGAGCGATTGATAGCCCC+AGG | + | Chr2:13671761-13671780 | None:intergenic | 55.0% |
! | CAGAGCGATTGATAGCCCCA+GGG | + | Chr2:13671760-13671779 | None:intergenic | 55.0% |
!! | GGCTGGCCTGCTTTCTTTGA+GGG | - | Chr2:13671731-13671750 | MsG0280007327.01.T01:intron | 55.0% |
!! | TGGCTGGCCTGCTTTCTTTG+AGG | - | Chr2:13671730-13671749 | MsG0280007327.01.T01:intron | 55.0% |
!! | GCAGCATGTGGTGGGCACTT+AGG | - | Chr2:13671898-13671917 | MsG0280007327.01.T01:intron | 60.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
Chr2 | gene | 13671164 | 13672165 | 13671164 | ID=MsG0280007327.01;Name=MsG0280007327.01 |
Chr2 | mRNA | 13671164 | 13672165 | 13671164 | ID=MsG0280007327.01.T01;Parent=MsG0280007327.01;Name=MsG0280007327.01.T01;_AED=0.27;_eAED=0.27;_QI=34|1|1|1|1|1|3|139|162 |
Chr2 | exon | 13671164 | 13671467 | 13671164 | ID=MsG0280007327.01.T01:exon:5779;Parent=MsG0280007327.01.T01 |
Chr2 | exon | 13671551 | 13671707 | 13671551 | ID=MsG0280007327.01.T01:exon:5778;Parent=MsG0280007327.01.T01 |
Chr2 | exon | 13671965 | 13672165 | 13671965 | ID=MsG0280007327.01.T01:exon:5777;Parent=MsG0280007327.01.T01 |
Chr2 | five_prime_UTR | 13672132 | 13672165 | 13672132 | ID=MsG0280007327.01.T01:five_prime_utr;Parent=MsG0280007327.01.T01 |
Chr2 | CDS | 13671965 | 13672131 | 13671965 | ID=MsG0280007327.01.T01:cds;Parent=MsG0280007327.01.T01 |
Chr2 | CDS | 13671551 | 13671707 | 13671551 | ID=MsG0280007327.01.T01:cds;Parent=MsG0280007327.01.T01 |
Chr2 | CDS | 13671303 | 13671467 | 13671303 | ID=MsG0280007327.01.T01:cds;Parent=MsG0280007327.01.T01 |
Chr2 | three_prime_UTR | 13671164 | 13671302 | 13671164 | ID=MsG0280007327.01.T01:three_prime_utr;Parent=MsG0280007327.01.T01 |
Gene Sequence |
Protein sequence |