AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0280007385.01

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0280007385.01.T01 MTR_2g023850 98.378 185 3 0 1 185 1 185 2.15e-132 368
MsG0280007385.01.T01 MTR_1g075540 56.425 179 78 0 1 179 1 179 3.91e-75 224
MsG0280007385.01.T01 MTR_1g075540 55.030 169 76 0 1 169 1 169 7.14e-69 207
MsG0280007385.01.T01 MTR_6g038540 29.530 149 101 3 12 158 56 202 5.02e-16 73.9
MsG0280007385.01.T01 MTR_1g008350 24.599 187 116 4 12 174 8 193 4.45e-12 62.4
MsG0280007385.01.T01 MTR_7g088590 26.316 152 108 4 9 159 94 242 7.49e-11 59.7
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0280007385.01.T01 AT4G04470 67.935 184 57 1 1 182 1 184 1.92e-92 268
MsG0280007385.01.T01 AT4G04470 67.935 184 57 1 1 182 1 184 1.92e-92 268
MsG0280007385.01.T01 AT4G14305 58.101 179 75 0 1 179 1 179 4.61e-79 233
MsG0280007385.01.T01 AT4G14305 58.278 151 63 0 29 179 17 167 3.12e-66 201
MsG0280007385.01.T01 AT5G43140 29.167 168 115 3 12 177 82 247 1.22e-20 86.3
MsG0280007385.01.T01 AT5G19750 27.684 177 124 4 9 184 115 288 4.19e-18 80.1
MsG0280007385.01.T01 AT2G14860 22.941 170 123 4 12 177 77 242 6.70e-11 59.7

Find 38 sgRNAs with CRISPR-Local

Find 212 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATCTTCTCCTTTGAACAATT+TGG 0.180466 2:+14804981 MsG0280007385.01.T01:CDS
GCCGGTTATCTTGGACCGTT+TGG 0.285317 2:+14804467 MsG0280007385.01.T01:CDS
CTTCTTGGAGCCGGTTATCT+TGG 0.286225 2:+14804458 MsG0280007385.01.T01:CDS
GCACTACTTTCATATAATAC+TGG 0.340075 2:+14804490 MsG0280007385.01.T01:CDS
CTGCAGTTCTGGCCTGTTGT+TGG 0.341557 2:+14806157 MsG0280007385.01.T01:intron
ATAGTGTCTCAGAAGCTTAC+TGG 0.346392 2:+14803130 MsG0280007385.01.T01:CDS
TGCAGTTCTGGCCTGTTGTT+GGG 0.356972 2:+14806158 MsG0280007385.01.T01:intron
ATTACTGCTGGTGTGTTGTC+AGG 0.361890 2:+14803097 MsG0280007385.01.T01:CDS
CCGGTTATCTTGGACCGTTT+GGG 0.404780 2:+14804468 MsG0280007385.01.T01:CDS
TAATTTATCCACCCAACAAC+AGG 0.412614 2:-14806169 None:intergenic
CAAAAGACTTCTTCTTAAAG+TGG 0.417508 2:+14803171 MsG0280007385.01.T01:CDS
CCCAAACGGTCCAAGATAAC+CGG 0.436846 2:-14804468 None:intergenic
ACAGCTTAGTAGCATTTGTC+TGG 0.437917 2:+14806227 MsG0280007385.01.T01:CDS
ATGGGTTCTGTTGCAAAGAA+TGG 0.448957 2:+14802800 MsG0280007385.01.T01:CDS
TGTGAAAGCTAGAGTGAAGA+AGG 0.449767 2:+14805981 MsG0280007385.01.T01:CDS
AGTGGACTGCAGGCCAACCT+TGG 0.479628 2:+14805953 MsG0280007385.01.T01:intron
CATGATGCTTTCTGCACTGA+TGG 0.489068 2:-14806009 None:intergenic
TGACATTGACTAAATCTTGA+GGG 0.499512 2:+14806491 MsG0280007385.01.T01:CDS
TGGATGCAGCTTCTTGGAGC+CGG 0.501506 2:+14804449 MsG0280007385.01.T01:intron
GTGGACTGCAGGCCAACCTT+GGG 0.519315 2:+14805954 MsG0280007385.01.T01:intron
CTTTCACATTCACCCAAGGT+TGG 0.536243 2:-14805966 None:intergenic
GTAAAACAGGTCATTACTGC+TGG 0.546193 2:+14803085 MsG0280007385.01.T01:intron
ATATGAAAGTAGTGCCCAAA+CGG 0.548043 2:-14804482 None:intergenic
TACTATGGATTAGTTATCGA+AGG 0.551886 2:+14805015 MsG0280007385.01.T01:CDS
CATCAGTGCAGAAAGCATCA+TGG 0.557769 2:+14806010 MsG0280007385.01.T01:CDS
TTACTGCTGGTGTGTTGTCA+GGG 0.558027 2:+14803098 MsG0280007385.01.T01:CDS
ATGAAAACCAAATTGTTCAA+AGG 0.571020 2:-14804988 None:intergenic
CTAGCTTTCACATTCACCCA+AGG 0.576629 2:-14805970 None:intergenic
ATGACATTGACTAAATCTTG+AGG 0.588326 2:+14806490 MsG0280007385.01.T01:CDS
GTGAAAGCTAGAGTGAAGAA+GGG 0.594799 2:+14805982 MsG0280007385.01.T01:CDS
AGTTCTGGCCTGTTGTTGGG+TGG 0.605028 2:+14806161 MsG0280007385.01.T01:intron
AGACAAATGCTACTAAGCTG+TGG 0.616134 2:-14806225 None:intergenic
ATGTCATAGATCGTGCTCGA+AGG 0.638913 2:-14806474 None:intergenic
AAAACAACACGGAAATGAAG+AGG 0.640824 2:-14806202 None:intergenic
CTAAGCTGTGGAAAACAACA+CGG 0.662691 2:-14806213 None:intergenic
AAACATACCTTGGTTCTCAG+AGG 0.666847 2:-14802857 None:intergenic
AGAACATCCTCTGAGAACCA+AGG 0.683842 2:+14802850 MsG0280007385.01.T01:CDS
AGTGCAGAAAGCATCATGGA+CGG 0.692696 2:+14806014 MsG0280007385.01.T01:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAAACAAAAACAAATAATA+AGG - Chr2:14802918-14802937 None:intergenic 10.0%
!! AAAACAAAAACAAATAATAA+GGG - Chr2:14802917-14802936 None:intergenic 10.0%
!! TATTTATATATAACAACAAA+AGG - Chr2:14804396-14804415 None:intergenic 10.0%
!! TGAAAAAAAAAAAAAAAAAC+TGG + Chr2:14803836-14803855 MsG0280007385.01.T01:intron 10.0%
!!! TTTTTTTTTTTTTTTCAACA+TGG - Chr2:14803833-14803852 None:intergenic 10.0%
!! AAAAAAAAAAAAAAAACTGG+TGG + Chr2:14803839-14803858 MsG0280007385.01.T01:intron 15.0%
!! AAATAAATTACTAGTTGAAT+AGG - Chr2:14805190-14805209 None:intergenic 15.0%
!! ATTCAAATTGAAAAACAAAA+TGG - Chr2:14803209-14803228 None:intergenic 15.0%
!! TAAAAAATGAATTATAGTGT+TGG + Chr2:14803372-14803391 MsG0280007385.01.T01:intron 15.0%
!! TACAATAATTGTAAAAGAAA+TGG - Chr2:14804284-14804303 None:intergenic 15.0%
!! TTATGTATATAATGTAAAAG+TGG + Chr2:14805935-14805954 MsG0280007385.01.T01:intron 15.0%
!!! AAAAAATCTTTTGATGATTT+TGG + Chr2:14803977-14803996 MsG0280007385.01.T01:intron 15.0%
!!! ATCAGTTTTAAAATGTAATT+TGG + Chr2:14805653-14805672 MsG0280007385.01.T01:intron 15.0%
!!! CTTTGAAAGAAAAAAAAAAA+CGG + Chr2:14805515-14805534 MsG0280007385.01.T01:intron 15.0%
!!! TAATATTTGTTAATGAAGTT+CGG + Chr2:14803457-14803476 MsG0280007385.01.T01:intron 15.0%
!!! TGATTAAAATCAAATGTTTT+TGG - Chr2:14805756-14805775 None:intergenic 15.0%
!!! TGTTCTTTAAAATGTTAAAT+TGG + Chr2:14804151-14804170 MsG0280007385.01.T01:intron 15.0%
!!! TTTTAAAATGTAATTTGGAA+TGG + Chr2:14805658-14805677 MsG0280007385.01.T01:intron 15.0%
!! AAATGAAGAATGTGAAAATT+AGG - Chr2:14803061-14803080 None:intergenic 20.0%
!! AATTGAATTTGTAGTGTTAA+AGG + Chr2:14803261-14803280 MsG0280007385.01.T01:intron 20.0%
!! ATGGAAATACTTAAAAATTC+AGG + Chr2:14804701-14804720 MsG0280007385.01.T01:intron 20.0%
!! ATTGAATTTGTAGTGTTAAA+GGG + Chr2:14803262-14803281 MsG0280007385.01.T01:intron 20.0%
!! ATTTCCATTTATGTGTAAAA+TGG + Chr2:14805897-14805916 MsG0280007385.01.T01:intron 20.0%
!! TATTGACAAAAATTTCTGAA+AGG + Chr2:14804210-14804229 MsG0280007385.01.T01:intron 20.0%
!! TGGAAATACTTAAAAATTCA+GGG + Chr2:14804702-14804721 MsG0280007385.01.T01:intron 20.0%
!! TGGGTTTGATAAAAAATATT+AGG + Chr2:14804111-14804130 MsG0280007385.01.T01:intron 20.0%
!!! AAGTAGATTTTTGTTATACA+AGG - Chr2:14802950-14802969 None:intergenic 20.0%
!!! AATTTTCACATTCTTCATTT+TGG + Chr2:14803061-14803080 MsG0280007385.01.T01:intron 20.0%
!!! AGTAGATTTTTGTTATACAA+GGG - Chr2:14802949-14802968 None:intergenic 20.0%
!!! ATATATGCTGTTTTATTTCA+GGG + Chr2:14806438-14806457 MsG0280007385.01.T01:intron 20.0%
!!! ATTGACAAAAATTTCTGAAA+GGG + Chr2:14804211-14804230 MsG0280007385.01.T01:intron 20.0%
!!! ATTTTACACATAAATGGAAA+TGG - Chr2:14805898-14805917 None:intergenic 20.0%
!!! ATTTTCACATTCTTCATTTT+GGG + Chr2:14803062-14803081 MsG0280007385.01.T01:intron 20.0%
!!! CTTTCTTTGATTATTTTTTC+AGG + Chr2:14804939-14804958 MsG0280007385.01.T01:intron 20.0%
!!! TATATATGCTGTTTTATTTC+AGG + Chr2:14806437-14806456 MsG0280007385.01.T01:intron 20.0%
!!! TTGTCAATATACTTTTCTTT+TGG - Chr2:14804199-14804218 None:intergenic 20.0%
!!! TTTTACACATAAATGGAAAT+GGG - Chr2:14805897-14805916 None:intergenic 20.0%
! AAAGAAAGATTCAAAAACTG+TGG + Chr2:14804529-14804548 MsG0280007385.01.T01:CDS 25.0%
! AAATGGAAATGGGATAAAAA+TGG - Chr2:14805887-14805906 None:intergenic 25.0%
! AATATTGGAGATTCAATAGA+AGG - Chr2:14804052-14804071 None:intergenic 25.0%
! AATGGAAATGGGATAAAAAT+GGG - Chr2:14805886-14805905 None:intergenic 25.0%
! AGAAAGACAAGAGAAAAAAA+GGG - Chr2:14806257-14806276 None:intergenic 25.0%
! ATATTTGTCAGTGAAAGATT+AGG + Chr2:14803516-14803535 MsG0280007385.01.T01:intron 25.0%
! ATGAAAACCAAATTGTTCAA+AGG - Chr2:14804991-14805010 None:intergenic 25.0%
! CAATTTGTATTTAGATACTG+CGG + Chr2:14803551-14803570 MsG0280007385.01.T01:intron 25.0%
! TAATTGTTGCTATAGACTAA+CGG + Chr2:14806327-14806346 MsG0280007385.01.T01:intron 25.0%
! TAGTACTAGATTATTGAGAA+TGG + Chr2:14804085-14804104 MsG0280007385.01.T01:intron 25.0%
! TATACACACTTAAGAAGTTA+AGG - Chr2:14806289-14806308 None:intergenic 25.0%
! TATATACATAACTACCAACA+TGG - Chr2:14805926-14805945 None:intergenic 25.0%
! TATTTGTCAGTGAAAGATTA+GGG + Chr2:14803517-14803536 MsG0280007385.01.T01:intron 25.0%
! TCAAATACATATGGAAAGTA+TGG + Chr2:14805099-14805118 MsG0280007385.01.T01:intron 25.0%
!! ATACTGGAAAAGATTTTCAA+AGG + Chr2:14804506-14804525 MsG0280007385.01.T01:CDS 25.0%
!! TTGTGTACAACTTTTTACAT+TGG - Chr2:14805823-14805842 None:intergenic 25.0%
!! TTTTCACATTCTTCATTTTG+GGG + Chr2:14803063-14803082 MsG0280007385.01.T01:intron 25.0%
!!! AGCTCAGTTTTATTTTAGTT+CGG + Chr2:14805287-14805306 MsG0280007385.01.T01:intron 25.0%
!!! ATTTTGAAAATACCAAACAC+AGG + Chr2:14805483-14805502 MsG0280007385.01.T01:intron 25.0%
!!! GTAGATTTTTGTTATACAAG+GGG - Chr2:14802948-14802967 None:intergenic 25.0%
!!! TATATGCTGTTTTATTTCAG+GGG + Chr2:14806439-14806458 MsG0280007385.01.T01:intron 25.0%
!!! TTGGTTTTCATGATATACTA+TGG + Chr2:14805000-14805019 MsG0280007385.01.T01:CDS 25.0%
!!! TTTTTGTATGAGTTTGAAGT+TGG - Chr2:14803936-14803955 None:intergenic 25.0%
AAAAAAAAAAACTGGTGGAG+AGG + Chr2:14803844-14803863 MsG0280007385.01.T01:intron 30.0%
AAAAAAAAAACTGGTGGAGA+GGG + Chr2:14803845-14803864 MsG0280007385.01.T01:intron 30.0%
AATCTCATTTGCAATACGAT+CGG + Chr2:14805859-14805878 MsG0280007385.01.T01:intron 30.0%
ACCAATAATTCAATACCTGA+AGG - Chr2:14802978-14802997 None:intergenic 30.0%
AGAAAGGAAGATAAATGTGA+TGG - Chr2:14804327-14804346 None:intergenic 30.0%
AGATATCCTAAAATGATGTG+TGG + Chr2:14805235-14805254 MsG0280007385.01.T01:intron 30.0%
AGTCATGTGTAAAATGTGTT+TGG - Chr2:14804797-14804816 None:intergenic 30.0%
AGTTGAATAGGAATGTCATT+GGG - Chr2:14805178-14805197 None:intergenic 30.0%
AGTTTATCTCATCACTAAGT+TGG + Chr2:14804014-14804033 MsG0280007385.01.T01:intron 30.0%
AGTTTGAGCTAAGTGATTAA+AGG + Chr2:14803301-14803320 MsG0280007385.01.T01:intron 30.0%
ATCTTCTCCTTTGAACAATT+TGG + Chr2:14804981-14805000 MsG0280007385.01.T01:CDS 30.0%
ATTTGTAGTGTTAAAGGGTT+TGG + Chr2:14803267-14803286 MsG0280007385.01.T01:intron 30.0%
CAAAAGACTTCTTCTTAAAG+TGG + Chr2:14803171-14803190 MsG0280007385.01.T01:CDS 30.0%
CAACAATTAACATGAATGTC+AGG - Chr2:14804622-14804641 None:intergenic 30.0%
CTTAAAAGCCATACAAAAGA+TGG + Chr2:14805783-14805802 MsG0280007385.01.T01:intron 30.0%
CTTTCCATATGTATTTGACT+TGG - Chr2:14805097-14805116 None:intergenic 30.0%
GAGAAAGACAAGAGAAAAAA+AGG - Chr2:14806258-14806277 None:intergenic 30.0%
GCACTACTTTCATATAATAC+TGG + Chr2:14804490-14804509 MsG0280007385.01.T01:CDS 30.0%
TACACCAAGTCAAATACATA+TGG + Chr2:14805090-14805109 MsG0280007385.01.T01:intron 30.0%
TAGTTGAATAGGAATGTCAT+TGG - Chr2:14805179-14805198 None:intergenic 30.0%
TATCTCTTCCACATGAATAT+TGG - Chr2:14804067-14804086 None:intergenic 30.0%
TATTATGAGAGCTCCATAAT+GGG + Chr2:14805328-14805347 MsG0280007385.01.T01:intron 30.0%
TCAACTCGACTTAAATTAGT+GGG + Chr2:14805351-14805370 MsG0280007385.01.T01:intron 30.0%
TCTTAAGTGTGTATAGTTTG+AGG + Chr2:14806294-14806313 MsG0280007385.01.T01:intron 30.0%
TTGAATCTCCAATATTCATG+TGG + Chr2:14804056-14804075 MsG0280007385.01.T01:intron 30.0%
TTTGTAGTGTTAAAGGGTTT+GGG + Chr2:14803268-14803287 MsG0280007385.01.T01:intron 30.0%
! AGATTATTGAGAATGGACTT+GGG + Chr2:14804092-14804111 MsG0280007385.01.T01:intron 30.0%
! ATCACAATCCATCTTTTGTA+TGG - Chr2:14805794-14805813 None:intergenic 30.0%
! GCATCCATTTTACACATAAA+TGG - Chr2:14805904-14805923 None:intergenic 30.0%
! TAGATTATTGAGAATGGACT+TGG + Chr2:14804091-14804110 MsG0280007385.01.T01:intron 30.0%
! TTATGTCCACACATCATTTT+AGG - Chr2:14805244-14805263 None:intergenic 30.0%
!! AAATCTACTTTTAGTCCTTC+AGG + Chr2:14802960-14802979 MsG0280007385.01.T01:intron 30.0%
!! AATTGGTTCTATTTCTCATC+TGG + Chr2:14804168-14804187 MsG0280007385.01.T01:intron 30.0%
!! TACTATGGATTAGTTATCGA+AGG + Chr2:14805015-14805034 MsG0280007385.01.T01:CDS 30.0%
!! TCAGGTATTGAATTATTGGT+GGG + Chr2:14802978-14802997 MsG0280007385.01.T01:intron 30.0%
!! TCCTTCAGGTATTGAATTAT+TGG + Chr2:14802974-14802993 MsG0280007385.01.T01:intron 30.0%
!! TTCAGGTATTGAATTATTGG+TGG + Chr2:14802977-14802996 MsG0280007385.01.T01:intron 30.0%
!! TTTTCAACATGGATTGAATC+AGG - Chr2:14803822-14803841 None:intergenic 30.0%
!!! ATATGCTGTTTTATTTCAGG+GGG + Chr2:14806440-14806459 MsG0280007385.01.T01:intron 30.0%
AAAACAACACGGAAATGAAG+AGG - Chr2:14806205-14806224 None:intergenic 35.0%
AAACGGTATGCATGATACAA+TGG + Chr2:14805532-14805551 MsG0280007385.01.T01:intron 35.0%
AAAGAAGAGGAAACATACCT+TGG - Chr2:14802870-14802889 None:intergenic 35.0%
AACTTGTGTAGAGATCCAAA+AGG + Chr2:14803910-14803929 MsG0280007385.01.T01:intron 35.0%
AATAGGAATGTCATTGGGTT+GGG - Chr2:14805173-14805192 None:intergenic 35.0%
ACAAGGTAAGAATGTGTACA+TGG + Chr2:14803776-14803795 MsG0280007385.01.T01:intron 35.0%
AGAACTGCAGTTCAATTCAA+TGG - Chr2:14806147-14806166 None:intergenic 35.0%
ATATGAAAGTAGTGCCCAAA+CGG - Chr2:14804485-14804504 None:intergenic 35.0%
ATTCAAAAACTGTGGTCAAG+AGG + Chr2:14804537-14804556 MsG0280007385.01.T01:CDS 35.0%
ATTGAATTGAACTGCAGTTC+TGG + Chr2:14806146-14806165 MsG0280007385.01.T01:intron 35.0%
CCAATTTCAACTTACCCAAA+GGG + Chr2:14803644-14803663 MsG0280007385.01.T01:intron 35.0%
GAAAGAGATTGAGAAAGAAG+AGG - Chr2:14802883-14802902 None:intergenic 35.0%
GTATTATGAGAGCTCCATAA+TGG + Chr2:14805327-14805346 MsG0280007385.01.T01:intron 35.0%
GTCAACTCGACTTAAATTAG+TGG + Chr2:14805350-14805369 MsG0280007385.01.T01:intron 35.0%
TAATTTATCCACCCAACAAC+AGG - Chr2:14806172-14806191 None:intergenic 35.0%
TCTACAATGTTGCTGCTAAT+CGG + Chr2:14804240-14804259 MsG0280007385.01.T01:intron 35.0%
TCTATCCATGACCTAAATTC+AGG + Chr2:14804596-14804615 MsG0280007385.01.T01:intron 35.0%
TCTTACCTTGTAGACGAATT+TGG - Chr2:14803767-14803786 None:intergenic 35.0%
TGCAAATGACTGTGAAAGAA+AGG - Chr2:14804343-14804362 None:intergenic 35.0%
TGTACATGGATATTCTCAAG+TGG + Chr2:14803790-14803809 MsG0280007385.01.T01:intron 35.0%
TTCAAAAACTGTGGTCAAGA+GGG + Chr2:14804538-14804557 MsG0280007385.01.T01:CDS 35.0%
TTCATTTAGTTGACAGAGCA+TGG + Chr2:14805064-14805083 MsG0280007385.01.T01:intron 35.0%
TTGCAGCTTCAAGAAAATTG+CGG - Chr2:14805427-14805446 None:intergenic 35.0%
! AGAACAGCTTTTGATCATAG+AGG - Chr2:14804137-14804156 None:intergenic 35.0%
! CCTTTGGGTAAGTTGAAATT+GGG - Chr2:14803646-14803665 None:intergenic 35.0%
! GACTTAAATTAGTGGGTGTT+TGG + Chr2:14805358-14805377 MsG0280007385.01.T01:intron 35.0%
! TTTTATTGGATGCAGCTTCT+TGG + Chr2:14804443-14804462 MsG0280007385.01.T01:intron 35.0%
!! ATAATGTAAAAGTGGACTGC+AGG + Chr2:14805943-14805962 MsG0280007385.01.T01:intron 35.0%
!! ATTTAGCGTGTTTGTTGTGT+TGG - Chr2:14806373-14806392 None:intergenic 35.0%
!! TTTCAGATTGATAGCGTGTT+TGG - Chr2:14803721-14803740 None:intergenic 35.0%
!!! TCTTCATTTTGGGGTAAAAC+AGG + Chr2:14803072-14803091 MsG0280007385.01.T01:intron 35.0%
AATACCAAACACAGGCTTAG+TGG + Chr2:14805491-14805510 MsG0280007385.01.T01:intron 40.0%
ACAGCTTAGTAGCATTTGTC+TGG + Chr2:14806227-14806246 MsG0280007385.01.T01:CDS 40.0%
ACTCCTAATGCACACAACAA+AGG + Chr2:14804874-14804893 MsG0280007385.01.T01:intron 40.0%
AGACAAATGCTACTAAGCTG+TGG - Chr2:14806228-14806247 None:intergenic 40.0%
ATAGTGTCTCAGAAGCTTAC+TGG + Chr2:14803130-14803149 MsG0280007385.01.T01:CDS 40.0%
ATGGGTTCTGTTGCAAAGAA+TGG + Chr2:14802800-14802819 MsG0280007385.01.T01:CDS 40.0%
CAAGAAAATTGCGGTGGAAA+GGG - Chr2:14805418-14805437 None:intergenic 40.0%
CAGTTAACTCATGCAGTGTA+TGG + Chr2:14804682-14804701 MsG0280007385.01.T01:intron 40.0%
CATGACCAAATTCGTCTACA+AGG + Chr2:14803759-14803778 MsG0280007385.01.T01:intron 40.0%
CATGGATATTCTCAAGTGGA+AGG + Chr2:14803794-14803813 MsG0280007385.01.T01:intron 40.0%
CCCAATTTCAACTTACCCAA+AGG + Chr2:14803643-14803662 MsG0280007385.01.T01:intron 40.0%
CTAAGCTGTGGAAAACAACA+CGG - Chr2:14806216-14806235 None:intergenic 40.0%
CTGAAATGTCTGTGCTACAT+AGG + Chr2:14803735-14803754 MsG0280007385.01.T01:intron 40.0%
GAATAGGAATGTCATTGGGT+TGG - Chr2:14805174-14805193 None:intergenic 40.0%
GGTGAATTTGTACAAGTCCT+CGG + Chr2:14803866-14803885 MsG0280007385.01.T01:intron 40.0%
GTAAAACAGGTCATTACTGC+TGG + Chr2:14803085-14803104 MsG0280007385.01.T01:intron 40.0%
GTGAAAGCTAGAGTGAAGAA+GGG + Chr2:14805982-14806001 MsG0280007385.01.T01:CDS 40.0%
GTGTAAAATGGATGCCATGT+TGG + Chr2:14805909-14805928 MsG0280007385.01.T01:intron 40.0%
TCAAGAAAATTGCGGTGGAA+AGG - Chr2:14805419-14805438 None:intergenic 40.0%
TCTACACAAGTTCCTTCCTT+CGG - Chr2:14803902-14803921 None:intergenic 40.0%
TGAATGTCAGGCCTGAATTT+AGG - Chr2:14804610-14804629 None:intergenic 40.0%
TGTGAAAGCTAGAGTGAAGA+AGG + Chr2:14805981-14806000 MsG0280007385.01.T01:CDS 40.0%
TTCAACTTACCCAAAGGGTT+TGG + Chr2:14803649-14803668 MsG0280007385.01.T01:intron 40.0%
! AAACATACCTTGGTTCTCAG+AGG - Chr2:14802860-14802879 None:intergenic 40.0%
! ATAGTGTTGGAACAGCAACT+CGG + Chr2:14803385-14803404 MsG0280007385.01.T01:intron 40.0%
! CCCTTTGGGTAAGTTGAAAT+TGG - Chr2:14803647-14803666 None:intergenic 40.0%
! TCTCCTTTGTTGTGTGCATT+AGG - Chr2:14804880-14804899 None:intergenic 40.0%
!! TAAGTCGAGTTGACCCATTA+TGG - Chr2:14805344-14805363 None:intergenic 40.0%
!!! TGAGTTTGAAGTTGGCCTTT+TGG - Chr2:14803928-14803947 None:intergenic 40.0%
AAGACCACTAAGCCTGTGTT+TGG - Chr2:14805498-14805517 None:intergenic 45.0%
AATATCAGCTGCCCTACAGT+CGG - Chr2:14803501-14803520 None:intergenic 45.0%
ACCACTAGTCCAAACCCTTT+GGG - Chr2:14803661-14803680 None:intergenic 45.0%
ATGTCATAGATCGTGCTCGA+AGG - Chr2:14806477-14806496 None:intergenic 45.0%
ATTACTGCTGGTGTGTTGTC+AGG + Chr2:14803097-14803116 MsG0280007385.01.T01:CDS 45.0%
CAGCTTCAAGAAAATTGCGG+TGG - Chr2:14805424-14805443 None:intergenic 45.0%
CATGATGCTTTCTGCACTGA+TGG - Chr2:14806012-14806031 None:intergenic 45.0%
CTTTCACATTCACCCAAGGT+TGG - Chr2:14805969-14805988 None:intergenic 45.0%
GATACAATGGACCTGACTCT+CGG + Chr2:14805545-14805564 MsG0280007385.01.T01:intron 45.0%
GCATCTGACACAAACACATG+TGG - Chr2:14803699-14803718 None:intergenic 45.0%
GCTATAGACTAACGGCTGTT+TGG + Chr2:14806335-14806354 MsG0280007385.01.T01:intron 45.0%
TCACCTGTCCGATGATGATT+GGG + Chr2:14805606-14805625 MsG0280007385.01.T01:intron 45.0%
TCAGGCCTGAATTTAGGTCA+TGG - Chr2:14804604-14804623 None:intergenic 45.0%
TTACTGCTGGTGTGTTGTCA+GGG + Chr2:14803098-14803117 MsG0280007385.01.T01:CDS 45.0%
TTCACCTGTCCGATGATGAT+TGG + Chr2:14805605-14805624 MsG0280007385.01.T01:intron 45.0%
TTCGGTCTCTTGTCACATGT+TGG + Chr2:14805305-14805324 MsG0280007385.01.T01:intron 45.0%
! AGAACATCCTCTGAGAACCA+AGG + Chr2:14802850-14802869 MsG0280007385.01.T01:CDS 45.0%
! CTAGCTTTCACATTCACCCA+AGG - Chr2:14805973-14805992 None:intergenic 45.0%
! TGGGTGTTTGGTAACCAAGT+GGG + Chr2:14805370-14805389 MsG0280007385.01.T01:intron 45.0%
!! AGTGCAGAAAGCATCATGGA+CGG + Chr2:14806014-14806033 MsG0280007385.01.T01:CDS 45.0%
!! CATCAGTGCAGAAAGCATCA+TGG + Chr2:14806010-14806029 MsG0280007385.01.T01:CDS 45.0%
!! CGTGTTTGTTGTGTTGGTGT+TGG - Chr2:14806367-14806386 None:intergenic 45.0%
!!! AATCATATAATTTTTTTTAT+TGG + Chr2:14804429-14804448 MsG0280007385.01.T01:intron 5.0%
CCCAAACGGTCCAAGATAAC+CGG - Chr2:14804471-14804490 None:intergenic 50.0%
CCGGTTATCTTGGACCGTTT+GGG + Chr2:14804468-14804487 MsG0280007385.01.T01:CDS 50.0%
CTGAGCCACCCAATCATCAT+CGG - Chr2:14805617-14805636 None:intergenic 50.0%
CTTCTTGGAGCCGGTTATCT+TGG + Chr2:14804458-14804477 MsG0280007385.01.T01:CDS 50.0%
GAAAGGGTTGAAACGTGAGG+TGG - Chr2:14805402-14805421 None:intergenic 50.0%
GACCACTAGTCCAAACCCTT+TGG - Chr2:14803662-14803681 None:intergenic 50.0%
GTGGAAAGGGTTGAAACGTG+AGG - Chr2:14805405-14805424 None:intergenic 50.0%
! ACCCAAAGGGTTTGGACTAG+TGG + Chr2:14803657-14803676 MsG0280007385.01.T01:intron 50.0%
! GTGGGTGTTTGGTAACCAAG+TGG + Chr2:14805369-14805388 MsG0280007385.01.T01:intron 50.0%
! GTTAGCTTCAGCTGAACGTG+TGG + Chr2:14805449-14805468 MsG0280007385.01.T01:intron 50.0%
! TGCAGTTCTGGCCTGTTGTT+GGG + Chr2:14806158-14806177 MsG0280007385.01.T01:intron 50.0%
!! TGTTGTGTTGGTGTTGGCAG+AGG - Chr2:14806361-14806380 None:intergenic 50.0%
ACAATGGACCTGACTCTCGG+CGG + Chr2:14805548-14805567 MsG0280007385.01.T01:intron 55.0%
AGGGTTGAAACGTGAGGTGG+CGG - Chr2:14805399-14805418 None:intergenic 55.0%
CCACCCAATCATCATCGGAC+AGG - Chr2:14805612-14805631 None:intergenic 55.0%
CCTGTCCGATGATGATTGGG+TGG + Chr2:14805609-14805628 MsG0280007385.01.T01:intron 55.0%
CGCCTACATCTCCGACTGTA+GGG + Chr2:14803487-14803506 MsG0280007385.01.T01:intron 55.0%
GCCGGTTATCTTGGACCGTT+TGG + Chr2:14804467-14804486 MsG0280007385.01.T01:CDS 55.0%
GGTGCAATGTCTCCGAAGGA+AGG + Chr2:14803887-14803906 MsG0280007385.01.T01:intron 55.0%
TCTCTTTACCGCCGAGAGTC+AGG - Chr2:14805559-14805578 None:intergenic 55.0%
TGCCCTACAGTCGGAGATGT+AGG - Chr2:14803492-14803511 None:intergenic 55.0%
TGGATGCAGCTTCTTGGAGC+CGG + Chr2:14804449-14804468 MsG0280007385.01.T01:intron 55.0%
! AGTTCTGGCCTGTTGTTGGG+TGG + Chr2:14806161-14806180 MsG0280007385.01.T01:intron 55.0%
! CTGCAGTTCTGGCCTGTTGT+TGG + Chr2:14806157-14806176 MsG0280007385.01.T01:intron 55.0%
CCTTCGGAGACATTGCACCG+AGG - Chr2:14803886-14803905 None:intergenic 60.0%
GCGCCTACATCTCCGACTGT+AGG + Chr2:14803486-14803505 MsG0280007385.01.T01:intron 60.0%
! CCTCGGTGCAATGTCTCCGA+AGG + Chr2:14803883-14803902 MsG0280007385.01.T01:intron 60.0%
! GTGGACTGCAGGCCAACCTT+GGG + Chr2:14805954-14805973 MsG0280007385.01.T01:intron 60.0%
! TGAGGTGGCGGTAACCCACT+TGG - Chr2:14805387-14805406 None:intergenic 60.0%
!! AGTGGACTGCAGGCCAACCT+TGG + Chr2:14805953-14805972 MsG0280007385.01.T01:intron 60.0%
Chromosome Type Strat End Strand Name
Chr2 gene 14802800 14806510 14802800 ID=MsG0280007385.01;Name=MsG0280007385.01
Chr2 mRNA 14802800 14806510 14802800 ID=MsG0280007385.01.T01;Parent=MsG0280007385.01;Name=MsG0280007385.01.T01;_AED=0.50;_eAED=0.50;_QI=0|0|0|1|0.83|0.85|7|0|185
Chr2 exon 14802800 14802871 14802800 ID=MsG0280007385.01.T01:exon:4106;Parent=MsG0280007385.01.T01
Chr2 exon 14803094 14803192 14803094 ID=MsG0280007385.01.T01:exon:4107;Parent=MsG0280007385.01.T01
Chr2 exon 14804458 14804559 14804458 ID=MsG0280007385.01.T01:exon:4108;Parent=MsG0280007385.01.T01
Chr2 exon 14804961 14805036 14804961 ID=MsG0280007385.01.T01:exon:4109;Parent=MsG0280007385.01.T01
Chr2 exon 14805965 14806035 14805965 ID=MsG0280007385.01.T01:exon:4110;Parent=MsG0280007385.01.T01
Chr2 exon 14806163 14806248 14806163 ID=MsG0280007385.01.T01:exon:4111;Parent=MsG0280007385.01.T01
Chr2 exon 14806459 14806510 14806459 ID=MsG0280007385.01.T01:exon:4112;Parent=MsG0280007385.01.T01
Chr2 CDS 14802800 14802871 14802800 ID=MsG0280007385.01.T01:cds;Parent=MsG0280007385.01.T01
Chr2 CDS 14803094 14803192 14803094 ID=MsG0280007385.01.T01:cds;Parent=MsG0280007385.01.T01
Chr2 CDS 14804458 14804559 14804458 ID=MsG0280007385.01.T01:cds;Parent=MsG0280007385.01.T01
Chr2 CDS 14804961 14805036 14804961 ID=MsG0280007385.01.T01:cds;Parent=MsG0280007385.01.T01
Chr2 CDS 14805965 14806035 14805965 ID=MsG0280007385.01.T01:cds;Parent=MsG0280007385.01.T01
Chr2 CDS 14806163 14806248 14806163 ID=MsG0280007385.01.T01:cds;Parent=MsG0280007385.01.T01
Chr2 CDS 14806459 14806510 14806459 ID=MsG0280007385.01.T01:cds;Parent=MsG0280007385.01.T01
Gene Sequence

>MsG0280007385.01.T01

ATGGGTTCTGTTGCAAAGAATGGACTCAACAGTTACGTCAAACAGCTTCAAGAACATCCTCTGAGAACCAAGGTCATTACTGCTGGTGTGTTGTCAGGGATAAGTGACATAGTGTCTCAGAAGCTTACTGGAATACAGAAACTTCAAGTCAAAAGACTTCTTCTTAAAGTGCTTCTTGGAGCCGGTTATCTTGGACCGTTTGGGCACTACTTTCATATAATACTGGAAAAGATTTTCAAAGGAAAGAAAGATTCAAAAACTGTGGTCAAGAGGGTTCTGATTGAACAGTTGACATCTTCTCCTTTGAACAATTTGGTTTTCATGATATACTATGGATTAGTTATCGAAGGCCAACCTTGGGTGAATGTGAAAGCTAGAGTGAAGAAGGGTTATCCATCAGTGCAGAAAGCATCATGGACGTTCTGGCCTGTTGTTGGGTGGATAAATTACAAATTCATGCCTCTTCATTTCCGTGTTGTTTTCCACAGCTTAGTAGCATTTGTCTGGGGGATATTTTTGAACCTTCGAGCACGATCTATGACATTGACTAAATCTTGA
Protein sequence

>MsG0280007385.01.T01

MGSVAKNGLNSYVKQLQEHPLRTKVITAGVLSGISDIVSQKLTGIQKLQVKRLLLKVLLGAGYLGPFGHYFHIILEKIFKGKKDSKTVVKRVLIEQLTSSPLNNLVFMIYYGLVIEGQPWVNVKARVKKGYPSVQKASWTFWPVVGWINYKFMPLHFRVVFHSLVAFVWGIFLNLRARSMTLTKS*